Citrus Sinensis ID: 019107

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSANLNIQM
cccccccccHHHHHHHHHHcccEEEEccHHHHHHHcccccccccccHHHcccccHHHHHHHHHHHHccccEEEcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccc
cccccccHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEEEEccccccccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccccccccEEEcc
mvsgsngttsFMTDFLqkcggysvvdggFATELerhgadlndplwsakclvssphlvrkVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRcmkdswdftgsgrissrpVLVAASVGsygayladgseysgdygdavsLETLKEFHRRRVLILANSgadliafeTIPNKLEAKAYAELLEeegitipawfsfnskdginvvsgdsILECASIADSCEQVVAVGinctsprfIHGLILSVRkvtskpviiypnsgeTYNAELKKWVestgvrdedfVSYIGKWRdagaslfggccrttpnTIKAISRVLsnkslpsanlniqm
mvsgsngttSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPViiypnsgetynAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAIsrvlsnkslpsanlniqm
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNkleakayaelleeeGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSANLNIQM
**********FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRV***************
***************LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFT***RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS*************
********TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSANLNIQM
*****NGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKD*********ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSANL****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSANLNIQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q8LAX0347 Homocysteine S-methyltran yes no 0.956 0.953 0.753 1e-152
Q9M1W4333 Homocysteine S-methyltran no no 0.930 0.966 0.712 1e-139
P56707338 Selenocysteine methyltran N/A no 0.959 0.982 0.684 1e-136
Q4VNK0346 Selenocysteine Se-methylt N/A no 0.947 0.947 0.688 1e-134
Q9FUM9339 Homocysteine S-methyltran N/A no 0.947 0.967 0.672 1e-130
Q9FUM8338 Homocysteine S-methyltran N/A no 0.939 0.961 0.662 1e-128
Q9FUM7342 Homocysteine S-methyltran N/A no 0.895 0.906 0.647 1e-123
A4ZGQ8326 Homocysteine S-methyltran N/A no 0.939 0.996 0.536 1e-103
Q9SDL7326 Homocysteine S-methyltran no no 0.924 0.981 0.541 1e-102
Q9FUN0323 Homocysteine S-methyltran N/A no 0.907 0.972 0.516 1e-100
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function desciption
 Score =  538 bits (1386), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/333 (75%), Positives = 295/333 (88%), Gaps = 2/333 (0%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9   TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct: 69  GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEA+AYA+LLEEE I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct: 189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query: 248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307
           INCT+PR+IH LI+S+R++T KP+++YPNSGE Y+   KKW++S G  +EDFVSY+ KWR
Sbjct: 249 INCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWR 308

Query: 308 DAGASLFGGCCRTTPNTIKAISRVLSNKSLPSA 340
           DAGASLFGGCCRTTPNTI+AI++VLS++  PSA
Sbjct: 309 DAGASLFGGCCRTTPNTIRAIAKVLSDE--PSA 339
Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1 Back     alignment and function description
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
255552095348 5-methyltetrahydrofolate:homocysteine me 0.956 0.951 0.848 1e-168
224107975338 homocysteine s-methyltransferase [Populu 0.947 0.970 0.841 1e-165
224102091339 homocysteine s-methyltransferase [Populu 0.945 0.964 0.854 1e-154
449522026338 PREDICTED: homocysteine S-methyltransfer 0.950 0.973 0.768 1e-152
449455288338 PREDICTED: homocysteine S-methyltransfer 0.950 0.973 0.765 1e-152
452090884368 homocysteine S-methyltransferase, partia 0.950 0.894 0.769 1e-151
297835280347 homocysteine S-methyltransferase 3 [Arab 0.965 0.962 0.751 1e-151
224085515341 homocysteine s-methyltransferase [Populu 0.950 0.964 0.750 1e-151
255638530341 unknown [Glycine max] 0.947 0.961 0.780 1e-151
255567526343 5-methyltetrahydrofolate:homocysteine me 0.962 0.970 0.749 1e-150
>gi|255552095|ref|XP_002517092.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi|223543727|gb|EEF45255.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/331 (84%), Positives = 306/331 (92%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T SFM+DFLQKCGGY+V+DGGFATELERHGADLNDPLWSAKCL+SSPHLVR+VHLDY+DA
Sbjct: 9   TRSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRRVHLDYIDA 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANII+TASYQATIQGFEAKG STEEAE LLRRSVEIACEAREIYYD C K SWD    G
Sbjct: 69  GANIILTASYQATIQGFEAKGLSTEEAEQLLRRSVEIACEAREIYYDNCTKGSWDLMEDG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           ++S  PVLVAAS+GSYGAYLADGSEYSGDYGDAVS++TLK+FHRRR+ ILA SGADLIAF
Sbjct: 129 KMSRHPVLVAASIGSYGAYLADGSEYSGDYGDAVSIQTLKDFHRRRLQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEAKAYAELLEEEGI IPAWFSFNSKDGINVVSGDSILECASIADS +QVVAVG
Sbjct: 189 ETIPNKLEAKAYAELLEEEGINIPAWFSFNSKDGINVVSGDSILECASIADSSKQVVAVG 248

Query: 248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307
           INCT PRFIHGLILS+R+ TSKP++IYPNSGETY+A LK+WV+S G  DEDFVSYIGKWR
Sbjct: 249 INCTPPRFIHGLILSMREATSKPIVIYPNSGETYDAALKQWVKSCGASDEDFVSYIGKWR 308

Query: 308 DAGASLFGGCCRTTPNTIKAISRVLSNKSLP 338
           +AGASLFGGCCRTTPNTI+AI R +SNKS P
Sbjct: 309 EAGASLFGGCCRTTPNTIRAICRNISNKSSP 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107975|ref|XP_002314674.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222863714|gb|EEF00845.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102091|ref|XP_002312542.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222852362|gb|EEE89909.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449522026|ref|XP_004168029.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455288|ref|XP_004145385.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] gi|449472065|ref|XP_004153485.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|452090884|gb|AGF95112.1| homocysteine S-methyltransferase, partial [Prunus persica] Back     alignment and taxonomy information
>gi|297835280|ref|XP_002885522.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297331362|gb|EFH61781.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224085515|ref|XP_002307602.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222857051|gb|EEE94598.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255638530|gb|ACU19573.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255567526|ref|XP_002524742.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi|223535926|gb|EEF37585.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2094419347 HMT3 "homocysteine S-methyltra 0.956 0.953 0.717 2.4e-131
TAIR|locus:2077234333 HMT2 "homocysteine methyltrans 0.933 0.969 0.682 5.8e-121
UNIPROTKB|Q4VNK0346 SMT "Selenocysteine Se-methylt 0.973 0.973 0.656 7.4e-121
UNIPROTKB|A4ZGQ8326 HMT1 "Homocysteine S-methyltra 0.939 0.996 0.503 7.5e-89
TAIR|locus:2092120326 HMT-1 [Arabidopsis thaliana (t 0.924 0.981 0.507 1.4e-87
UNIPROTKB|Q47690310 mmuM [Escherichia coli K-12 (t 0.835 0.932 0.432 7.5e-57
ZFIN|ZDB-GENE-030131-9545311 zgc:172121 "zgc:172121" [Danio 0.843 0.938 0.364 1.2e-44
FB|FBgn0032727331 CG10623 [Drosophila melanogast 0.861 0.900 0.320 6.6e-42
FB|FBgn0032726331 CG10621 [Drosophila melanogast 0.861 0.900 0.313 1.6e-40
SGD|S000003985324 MHT1 "S-methylmethionine-homoc 0.846 0.904 0.287 3.2e-26
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 239/333 (71%), Positives = 281/333 (84%)

Query:     8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
             T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct:     9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query:    68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
             GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct:    69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query:   128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
             + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct:   129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query:   188 ETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
             ETIPN               I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct:   189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query:   248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWR 307
             INCT+PR+IH LI+S+R++T KP+++YPNSGE Y+   KKW++S G  +EDFVSY+ KWR
Sbjct:   249 INCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWR 308

Query:   308 DAGASLFGGCCRTTPNTIKAISRVLSNKSLPSA 340
             DAGASLFGGCCRTTPNTI+AI++VLS++  PSA
Sbjct:   309 DAGASLFGGCCRTTPNTIRAIAKVLSDE--PSA 339
GO:0005737 "cytoplasm" evidence=ISM
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000003985 MHT1 "S-methylmethionine-homocysteine methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4ZGQ8HMT1_BRAOT2, ., 1, ., 1, ., 1, 00.53610.93930.9969N/Ano
Q9M1W4HMT2_ARATH2, ., 1, ., 1, ., 1, 00.71290.93060.9669nono
Q9FUN0HMT1_MAIZE2, ., 1, ., 1, ., 1, 00.51670.90750.9721N/Ano
O31463HMT_BACSU2, ., 1, ., 1, ., 1, 00.47710.84390.9269yesno
P56707SMTA_ASTBI2, ., 1, ., 1, ., n, 30.68460.95950.9822N/Ano
Q8LAX0HMT3_ARATH2, ., 1, ., 1, ., 1, 00.75370.95660.9538yesno
Q4VNK0SMTA_BRAOT2, ., 1, ., 1, ., n, 30.68860.94790.9479N/Ano
Q9FUM8HMT3_MAIZE2, ., 1, ., 1, ., 1, 00.66260.93930.9615N/Ano
Q9FUM9HMT2_MAIZE2, ., 1, ., 1, ., 1, 00.67260.94790.9675N/Ano
Q9FUM7HMT4_MAIZE2, ., 1, ., 1, ., 1, 00.64720.89590.9064N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.983
4th Layer2.1.1.100.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HMT2
homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00880022
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (485 aa)
     •• 0.928
estExt_Genewise1_v1.C_LG_I3343
adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (EC-3.3.1.1) (485 aa)
     •• 0.928
AdoMet5
s-adenosylmethionine synthetase 5 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (392 aa)
     •• 0.927
METK3
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (396 aa)
     •• 0.927
AdoMet3
s-adenosylmethionine synthetase 3 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (395 aa)
     •• 0.927
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
     •• 0.927
METK2
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.926
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.926
AMT7
aminotransferase family protein (EC-2.6.1.5) (407 aa)
     •  0.899
fgenesh4_pg.C_LG_III001784
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 0.0
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 1e-149
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 2e-99
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 3e-94
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 1e-33
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 2e-33
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 5e-18
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 5e-14
PRK09490 1229 PRK09490, metH, B12-dependent methionine synthase; 5e-13
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information 
 Score =  644 bits (1663), Expect = 0.0
 Identities = 249/336 (74%), Positives = 292/336 (86%), Gaps = 1/336 (0%)

Query: 1   MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
                   +S + D L++ GG +V+DGGFATELERHGADLNDPLWSAKCL++SPHL+RKV
Sbjct: 1   GGYVLPQMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKV 60

Query: 61  HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
           HLDYL+AGA+IIITASYQATIQGFE++G S EE+E LLR+SVEIACEAR+I++D+C K S
Sbjct: 61  HLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGS 120

Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
               G   +S RP+LVAAS+GSYGAYLADGSEYSGDYG +V+LE LK+FHRRR+ +LA +
Sbjct: 121 TSRPG-RELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEA 179

Query: 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240
           G DLIAFETIPNKLEA+AY ELLEEE I IPAW SFNSKDG+NVVSGDS+LECASIADSC
Sbjct: 180 GPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC 239

Query: 241 EQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFV 300
           ++VVAVGINCT PRFIHGLILS+RKVTSKP+++YPNSGETY+ E K+WVESTGV DEDFV
Sbjct: 240 KKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFV 299

Query: 301 SYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 336
           SY+ KWRDAGASL GGCCRTTPNTI+AIS+ LS + 
Sbjct: 300 SYVNKWRDAGASLIGGCCRTTPNTIRAISKALSERL 335

Length = 335
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
PLN02489335 homocysteine S-methyltransferase 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
KOG1579317 consensus Homocysteine S-methyltransferase [Amino 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PRK07534336 methionine synthase I; Validated 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 96.99
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 95.68
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 95.67
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 95.45
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 94.96
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 94.93
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 94.92
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 94.82
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 94.67
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 94.63
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 94.54
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 94.5
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 94.41
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 94.35
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 94.31
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 94.19
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 94.15
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 94.07
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 93.98
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 93.78
PLN02424332 ketopantoate hydroxymethyltransferase 93.78
PRK10415 321 tRNA-dihydrouridine synthase B; Provisional 93.61
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 93.55
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 93.54
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 93.42
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 93.26
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 93.12
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 92.91
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 92.87
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 92.87
TIGR03217 333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 92.78
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 92.73
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 92.67
COG0113330 HemB Delta-aminolevulinic acid dehydratase [Coenzy 92.44
PRK09485304 mmuM homocysteine methyltransferase; Provisional 92.38
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 92.25
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 92.17
PRK07534336 methionine synthase I; Validated 92.12
cd00384314 ALAD_PBGS Porphobilinogen synthase (PBGS), which i 92.04
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 91.96
cd00952309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 91.87
PRK09283323 delta-aminolevulinic acid dehydratase; Validated 91.86
TIGR02313294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 91.81
PRK14042 596 pyruvate carboxylase subunit B; Provisional 91.74
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 91.67
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 91.28
cd04823320 ALAD_PBGS_aspartate_rich Porphobilinogen synthase 91.28
PRK04147293 N-acetylneuraminate lyase; Provisional 91.06
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 90.93
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 90.9
cd04824320 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas 90.89
PF02548261 Pantoate_transf: Ketopantoate hydroxymethyltransfe 90.85
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 90.84
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 90.73
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 90.48
TIGR00742 318 yjbN tRNA dihydrouridine synthase A. Members of th 90.29
PRK10550 312 tRNA-dihydrouridine synthase C; Provisional 89.72
PRK06852304 aldolase; Validated 89.64
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 89.56
cd02911233 arch_FMN Archeal FMN-binding domain. This family o 89.29
TIGR00612 346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 89.28
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 89.23
PRK15063428 isocitrate lyase; Provisional 88.97
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 88.89
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 88.88
PRK13523337 NADPH dehydrogenase NamA; Provisional 88.8
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 88.65
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 88.6
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 88.55
PLN02489335 homocysteine S-methyltransferase 88.46
PRK12581 468 oxaloacetate decarboxylase; Provisional 88.44
PRK14040 593 oxaloacetate decarboxylase; Provisional 87.95
PRK08195 337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 87.85
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 87.76
PRK02412253 aroD 3-dehydroquinate dehydratase; Provisional 87.69
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 87.56
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 87.47
PRK00366 360 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s 87.41
PLN02417280 dihydrodipicolinate synthase 87.29
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 87.13
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 87.1
PRK03170292 dihydrodipicolinate synthase; Provisional 87.07
cd00953279 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas 86.94
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 86.85
COG0821 361 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat 86.51
PRK13397250 3-deoxy-7-phosphoheptulonate synthase; Provisional 86.45
PRK15452 443 putative protease; Provisional 86.43
cd02932 336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 86.25
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 86.2
TIGR02151333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 86.13
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 86.07
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 86.03
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 85.98
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 85.75
PRK12677384 xylose isomerase; Provisional 85.73
PRK12581 468 oxaloacetate decarboxylase; Provisional 85.67
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 85.11
PRK12858340 tagatose 1,6-diphosphate aldolase; Reviewed 85.05
PRK08673335 3-deoxy-7-phosphoheptulonate synthase; Reviewed 84.89
PRK02506310 dihydroorotate dehydrogenase 1A; Reviewed 84.82
PLN02746347 hydroxymethylglutaryl-CoA lyase 84.65
cd04747361 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN 84.61
TIGR02127261 pyrF_sub2 orotidine 5'-phosphate decarboxylase, su 84.49
PRK12331 448 oxaloacetate decarboxylase; Provisional 84.29
PRK13587234 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 84.17
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 84.11
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 83.93
cd04739325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 83.88
PF01487224 DHquinase_I: Type I 3-dehydroquinase; InterPro: IP 83.67
COG0826347 Collagenase and related proteases [Posttranslation 83.53
PRK15063428 isocitrate lyase; Provisional 83.15
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 83.05
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 82.91
KOG2335 358 consensus tRNA-dihydrouridine synthase [Translatio 82.76
PRK09250348 fructose-bisphosphate aldolase; Provisional 82.59
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 82.55
PF00682237 HMGL-like: HMGL-like of this family is not conserv 82.55
TIGR00736231 nifR3_rel_arch TIM-barrel protein, putative. Membe 82.39
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 81.98
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 81.97
PRK12331 448 oxaloacetate decarboxylase; Provisional 81.75
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 81.68
PRK05581220 ribulose-phosphate 3-epimerase; Validated 81.44
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 81.03
PRK12330 499 oxaloacetate decarboxylase; Provisional 80.85
PRK00748233 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 80.84
PRK09282 592 pyruvate carboxylase subunit B; Validated 80.34
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=7.6e-82  Score=608.90  Aligned_cols=326  Identities=76%  Similarity=1.270  Sum_probs=290.2

Q ss_pred             chHHHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCC
Q 019107            9 TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKG   88 (346)
Q Consensus         9 ~~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g   88 (346)
                      +..|+++|++.++++||||||||+|+++|+++++|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.++|
T Consensus         9 ~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g   88 (335)
T PLN02489          9 SSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRG   88 (335)
T ss_pred             hHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcC
Confidence            45688898854569999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHH
Q 019107           89 FSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE  168 (346)
Q Consensus        89 ~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~  168 (346)
                      ++.+++++++++||+|||+|++++..+.....+ .+.+....+++++|||||||+|+++.+|+||+|+|++.++++++++
T Consensus        89 ~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~  167 (335)
T PLN02489         89 LSREESETLLRKSVEIACEARDIFWDKCQKGST-SRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKD  167 (335)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHH
Confidence            987889999999999999999876332100000 0000111235799999999999999999999999997789999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEE
Q 019107          169 FHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGI  248 (346)
Q Consensus       169 ~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGv  248 (346)
                      +|++|++.|.++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|++|+++.+++..+++..++++||+
T Consensus       168 ~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGi  247 (335)
T PLN02489        168 FHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGI  247 (335)
T ss_pred             HHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEe
Confidence            99999999999999999999999999999999999987656999999999999999999999999998865457899999


Q ss_pred             CCCChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHH
Q 019107          249 NCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAI  328 (346)
Q Consensus       249 NC~~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al  328 (346)
                      ||++|+.+..++++++.....|+++|||+|..|+...+.|......+|++|++++++|++.|++||||||||||+||++|
T Consensus       248 NC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al  327 (335)
T PLN02489        248 NCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAI  327 (335)
T ss_pred             cCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHH
Confidence            99999999999999998888999999999999988777887655567899999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 019107          329 SRVLSNK  335 (346)
Q Consensus       329 ~~~~~~~  335 (346)
                      ++.++.+
T Consensus       328 ~~~l~~~  334 (335)
T PLN02489        328 SKALSER  334 (335)
T ss_pred             HHHHhcC
Confidence            9998753

>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PLN02424 ketopantoate hydroxymethyltransferase Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism] Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PRK09283 delta-aminolevulinic acid dehydratase; Validated Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll Back     alignment and domain information
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>TIGR00742 yjbN tRNA dihydrouridine synthase A Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd02911 arch_FMN Archeal FMN-binding domain Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>PRK13523 NADPH dehydrogenase NamA; Provisional Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed Back     alignment and domain information
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed Back     alignment and domain information
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 Back     alignment and domain information
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2 Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09250 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
1q7m_A 566 Cobalamin-Dependent Methionine Synthase (Meth) From 1e-15
1q85_A 566 Cobalamin-Dependent Methionine Synthase (1-566) Fro 6e-15
1umy_A407 Bhmt From Rat Liver Length = 407 8e-08
1lt7_A406 Oxidized Homo Sapiens Betaine-Homocysteine S-Methyl 1e-05
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From Thermotoga Maritima (Oxidized, Monoclinic) Length = 566 Back     alignment and structure 
Iteration: 1

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 44/316 (13%)
Query: 24  VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
           ++DG + TE  ++G D        +  + +P +V KVH  Y+++G+++I+T ++ AT   
Sbjct: 17  LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72
Query: 84  FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
               G   ++ + ++R +V IA                      R ++   LV   +G  
Sbjct: 73  LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109
Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXX 203
           G       E     G  +  E   E  R  V I+   G D I FET  +           
Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAA 161
Query: 204 XXXG--ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-SPRFIHGLI 260
                 + + A  +F+ K     ++G      A   D  + + A+GINC+  P  I  + 
Sbjct: 162 REVSRDVFLIAHMTFDEKG--RSLTGTDPANFAITFDELD-IDALGINCSLGPEEILPIF 218
Query: 261 LSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRT 320
             + + T K +++ PN+G+    E  K V    ++  DF  +I  + + G ++FGGCC T
Sbjct: 219 QELSQYTDKFLVVEPNAGKPI-VENGKTVYP--LKPHDFAVHIDSYYELGVNIFGGCCGT 275
Query: 321 TPNTIKAISRVLSNKS 336
           TP  +K   +VL N+ 
Sbjct: 276 TPEHVKLFRKVLGNRK 291
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima (Cd2+ Complex, Se-Met) Length = 566 Back     alignment and structure
>pdb|1UMY|A Chain A, Bhmt From Rat Liver Length = 407 Back     alignment and structure
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-Methyltransferase In Complex With Four Sm(Iii) Ions Length = 406 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 1e-50
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 5e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  172 bits (438), Expect = 1e-50
 Identities = 66/350 (18%), Positives = 122/350 (34%), Gaps = 56/350 (16%)

Query: 7   GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
           G        L++     +V  DGGF   LE+ G     P W+ +  V  P  VR++H ++
Sbjct: 5   GGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREF 63

Query: 65  LDAGANIIITASYQATIQGFEAKGFSTEE---AEALLRRSVEIACEAREIYYDRCMKDSW 121
           L AG+N++ T ++ A+    E +G    E    + +   + +IA +  +           
Sbjct: 64  LRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVAD----------- 112

Query: 122 DFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG 181
                        LVA  V    +YL+             S   +K+   +++ +     
Sbjct: 113 ---------EGDALVAGGVSQTPSYLSA-----------KSETEVKKVFLQQLEVFMKKN 152

Query: 182 ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241
            D +  E   +  EA    E L   G  + A  +         + G    E A       
Sbjct: 153 VDFLIAEYFEHVEEAVWAVETLIASGKPVAATMAI---GPEGDLHGVPPGEAAVRLVKA- 208

Query: 242 QVVAVGINC-TSPRFIHGLILSVRKVT-----SKPVIIYPNSGETYNAELKKWVESTGVR 295
               +G+NC   P      +  +++          ++  P +  T +A  + +++     
Sbjct: 209 GASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFP 268

Query: 296 D---------EDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 336
                      D   Y  +  + G    GGCC   P  I+AI+  L+ + 
Sbjct: 269 FGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPER 318
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 95.61
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 95.56
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 95.35
3fkr_A 309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 95.32
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 95.16
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 95.12
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 95.08
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 95.04
3dz1_A 313 Dihydrodipicolinate synthase; lysine biosynthesis, 94.98
1z41_A338 YQJM, probable NADH-dependent flavin oxidoreductas 94.94
3qfe_A 318 Putative dihydrodipicolinate synthase family PROT; 94.89
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 94.78
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 94.76
2v9d_A 343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 94.66
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 94.48
3eb2_A300 Putative dihydrodipicolinate synthetase; lysine bi 94.47
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 94.44
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 94.44
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 94.41
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 94.34
3daq_A292 DHDPS, dihydrodipicolinate synthase; lysine biosyn 94.29
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 94.2
2e6f_A314 Dihydroorotate dehydrogenase; chagas disease, pyri 94.09
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 94.06
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 94.02
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 93.98
3e96_A 316 Dihydrodipicolinate synthase; structural genomics, 93.95
2r8w_A332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 93.94
3d0c_A314 Dihydrodipicolinate synthase; lysine biosynthesis, 93.85
2rfg_A297 Dihydrodipicolinate synthase; beta barrel, amino-a 93.75
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 93.68
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 93.55
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 93.51
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 93.45
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 93.44
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 93.34
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 93.27
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 93.22
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 93.13
3noy_A 366 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 93.08
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 93.06
3h5d_A 311 DHDPS, dihydrodipicolinate synthase; lysine biosyn 93.01
3eol_A433 Isocitrate lyase; seattle structural center for in 92.89
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 92.56
3gr7_A340 NADPH dehydrogenase; flavin, FMN, beta-alpha-barre 92.32
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 92.24
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 91.93
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 91.84
1w3i_A293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 91.54
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 91.12
2hmc_A 344 AGR_L_411P, dihydrodipicolinate synthase; alpha-be 91.05
1m3u_A264 3-methyl-2-oxobutanoate hydroxymethyltransferase; 91.01
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 90.79
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 90.76
4h3d_A258 3-dehydroquinate dehydratase; structural genomics, 90.56
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 90.22
1w1z_A328 Delta-aminolevulinic acid dehydratase; synthase, t 89.82
3oix_A345 Putative dihydroorotate dehydrogenase; dihydrooro 89.79
4dpp_A360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 89.74
1h7n_A342 5-aminolaevulinic acid dehydratase; lyase, aldolas 89.72
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 89.65
1l6s_A323 Porphobilinogen synthase; dehydratase, lyase; HET: 89.13
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 88.88
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 88.85
3vav_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 88.72
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 88.27
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 88.2
4ef8_A354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 88.16
1ps9_A 671 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel 88.12
3rmj_A370 2-isopropylmalate synthase; LEUA, truncation, neis 87.85
3ble_A337 Citramalate synthase from leptospira interrogans; 87.78
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 87.57
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 87.3
3o1n_A276 3-dehydroquinate dehydratase; structural genomics, 87.23
1zco_A262 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin 86.93
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 86.9
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 86.54
1rqb_A 539 Transcarboxylase 5S subunit; TIM-barrel, carbamyla 86.31
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 86.04
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 85.98
1vzw_A244 Phosphoribosyl isomerase A; histidine biosynthesis 85.96
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 85.83
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 85.82
1vyr_A364 Pentaerythritol tetranitrate reductase; oxidoreduc 85.79
1pv8_A330 Delta-aminolevulinic acid dehydratase; porphobilin 85.11
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 85.09
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 85.04
1sfl_A238 3-dehydroquinate dehydratase; 3-dehydroquinase, en 84.88
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 84.73
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 83.94
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 83.77
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 83.56
4g9p_A 406 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 83.48
3obk_A356 Delta-aminolevulinic acid dehydratase; ssgcid, str 83.32
4h3d_A258 3-dehydroquinate dehydratase; structural genomics, 83.2
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 82.9
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 82.86
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 82.76
1icp_A376 OPR1, 12-oxophytodienoate reductase 1; beta-alpha- 82.68
3r89_A290 Orotidine 5'-phosphate decarboxylase; PSI-biology, 82.63
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 82.51
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 82.26
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 81.67
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 81.55
3eol_A433 Isocitrate lyase; seattle structural center for in 81.35
2hsa_B402 12-oxophytodienoate reductase 3; alpha beta 8 barr 81.28
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 81.27
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 80.81
2yr1_A257 3-dehydroquinate dehydratase; amino acid biosynthe 80.57
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 80.23
3zwt_A367 Dihydroorotate dehydrogenase (quinone), mitochond; 80.13
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=1.1e-70  Score=540.82  Aligned_cols=289  Identities=22%  Similarity=0.333  Sum_probs=247.8

Q ss_pred             hHHHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCC
Q 019107           10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF   89 (346)
Q Consensus        10 ~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~   89 (346)
                      +.|.++|++ ++++||||||||+|+++|++.. ++|++++++++||+|+++|++|++||||||+||||++|+.+|.++|+
T Consensus        11 ~~l~~~L~~-~~ilIlDGgmGT~L~~~G~~~~-~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~G~   88 (406)
T 1lt8_A           11 KGILERLNA-GEIVIGDGGFVFALEKRGYVKA-GPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGN   88 (406)
T ss_dssp             CCHHHHHHT-TCCEECCCCHHHHHHHHTSSCT-TTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC------
T ss_pred             HHHHHHHhc-CCEEEEeCccchHHHHCCCCCC-cccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhcCC
Confidence            458899983 3599999999999999998763 58999999999999999999999999999999999999999999997


Q ss_pred             CH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHH
Q 019107           90 ST---EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL  166 (346)
Q Consensus        90 ~~---~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~  166 (346)
                      +.   +++++||++||+|||+|++.                    .+++|||||||+|.++.           .++++++
T Consensus        89 ~~~~~~~~~eln~~Av~LAreAa~~--------------------~~~~VAGsIGP~g~~l~-----------~~s~eel  137 (406)
T 1lt8_A           89 YVLEKISGQEVNEAAADIARQVADE--------------------GDALVAGGVSQTPSYLS-----------AKSETEV  137 (406)
T ss_dssp             -------CHHHHHHHHHHHHHHHTT--------------------TTCEEEEEECCCHHHHT-----------TCHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhc--------------------CCCEEEEEcCCcccccC-----------CCCHHHH
Confidence            42   45789999999999999852                    25799999999997552           2689999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEE
Q 019107          167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV  246 (346)
Q Consensus       167 ~~~~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~av  246 (346)
                      +++|++|+++|.++|||+|++|||+++.|++++++++++.+  +|||+||++.++++ ++|+++.+++..+.+ .++++|
T Consensus       138 ~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~--lPv~iS~T~~~~G~-l~G~~~~~~~~~l~~-~~~~av  213 (406)
T 1lt8_A          138 KKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG--KPVAATMAIGPEGD-LHGVPPGEAAVRLVK-AGASII  213 (406)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT--SCEEEEECCBTTBC-TTCCCHHHHHHHHHT-TTCSEE
T ss_pred             HHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC--CcEEEEEEECCCCC-cCCCcHHHHHHHhhc-CCCCEE
Confidence            99999999999999999999999999999999999999865  99999999988888 899999999998876 479999


Q ss_pred             EECCC-ChhhHHHHHHHHhhhc-----CCcEEEeeCCCCcccccccccccc----CCCChH-----HHHHHHHHHHHcCC
Q 019107          247 GINCT-SPRFIHGLILSVRKVT-----SKPVIIYPNSGETYNAELKKWVES----TGVRDE-----DFVSYIGKWRDAGA  311 (346)
Q Consensus       247 GvNC~-~p~~~~~~l~~l~~~~-----~~pl~vypN~g~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~G~  311 (346)
                      ||||+ +|+.+.++++.+++..     +.|+++|||+|..|+.....|...    ...+|+     +|++++++|++.|+
T Consensus       214 GvNC~~gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga  293 (406)
T 1lt8_A          214 GVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGV  293 (406)
T ss_dssp             EEESSSCHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTE
T ss_pred             EecCCCCHHHHHHHHHHHHHhhhhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            99997 8999999999998764     789999999998777544566531    123444     59999999999999


Q ss_pred             eEEeecCCCchHHHHHHHHHHcCC
Q 019107          312 SLFGGCCRTTPNTIKAISRVLSNK  335 (346)
Q Consensus       312 ~ivGGCCGt~P~hI~al~~~~~~~  335 (346)
                      +||||||||||+||++|++.++..
T Consensus       294 ~iIGGCCGTtPeHI~aia~~l~~~  317 (406)
T 1lt8_A          294 RYIGGCCGFEPYHIRAIAEELAPE  317 (406)
T ss_dssp             EEECCCTTCCHHHHHHHHHHTHHH
T ss_pred             eEEEEecCCCHHHHHHHHHHHhcc
Confidence            999999999999999999998744
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* Back     alignment and structure
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... Back     alignment and structure
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* Back     alignment and structure
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49} Back     alignment and structure
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* Back     alignment and structure
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 346
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 7e-45
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 3e-43
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  153 bits (387), Expect = 7e-45
 Identities = 63/312 (20%), Positives = 110/312 (35%), Gaps = 38/312 (12%)

Query: 24  VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
           ++DG + TE  ++G D        +  + +P +V KVH  Y+++G+++I+T ++ AT   
Sbjct: 17  LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72

Query: 84  FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
               G   +    +          A E      +  + +       +             
Sbjct: 73  LRKHGLEDKLDPIVRNAVRIARRAAGEKLVFGDIGPTGELPYPLGSTLF----------- 121

Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
                               E   E  R  V I+   G D I FET  + LE KA     
Sbjct: 122 --------------------EEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAA 161

Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV 263
            E    +         +    ++G      A   D  +           P  I  +   +
Sbjct: 162 REVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQEL 221

Query: 264 RKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPN 323
            + T K +++ PN+G+      K           DF  +I  + + G ++FGGCC TTP 
Sbjct: 222 SQYTDKFLVVEPNAGKPIVENGKTVYPLK---PHDFAVHIDSYYELGVNIFGGCCGTTPE 278

Query: 324 TIKAISRVLSNK 335
            +K   +VL N+
Sbjct: 279 HVKLFRKVLGNR 290
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d1lt7a_ 361 Betaine-homocysteine S-methyltransferase {Human (H 95.57
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 95.34
d1o66a_260 Ketopantoate hydroxymethyltransferase PanB {Neisse 95.25
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 94.72
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 94.25
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 94.2
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 93.74
d1l6sa_323 5-aminolaevulinate dehydratase, ALAD (porphobilino 92.23
d1oy0a_262 Ketopantoate hydroxymethyltransferase PanB {Mycoba 91.31
d2c1ha1319 5-aminolaevulinate dehydratase, ALAD (porphobilino 91.11
d1w3ia_293 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus 89.47
d1f74a_293 N-acetylneuraminate lyase {Haemophilus influenzae 89.12
d1gzga_329 5-aminolaevulinate dehydratase, ALAD (porphobilino 87.93
d1pv8a_320 5-aminolaevulinate dehydratase, ALAD (porphobilino 87.68
d2fdsa1324 Protozoan orotidine monophosphate decarboxylase {P 87.26
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 87.05
d1gqna_252 Type I 3-dehydroquinate dehydratase {Salmonella ty 85.47
d1gqna_252 Type I 3-dehydroquinate dehydratase {Salmonella ty 83.7
d1ujpa_271 Trp synthase alpha-subunit {Thermus thermophilus [ 83.45
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 83.11
d1igwa_416 Isocitrate lyase {Escherichia coli [TaxId: 562]} 81.82
d1vhna_ 305 Putative flavin oxidoreducatase TM0096 {Thermotoga 80.43
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 80.3
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.7e-68  Score=505.74  Aligned_cols=291  Identities=26%  Similarity=0.423  Sum_probs=258.5

Q ss_pred             hHHHHHhhccCCeEEEecchHHHHHHcCCCCCCCccchhccCCChHHHHHHHHHHHHhhcceeeccccccCHHhHHhCCC
Q 019107           10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF   89 (346)
Q Consensus        10 ~~~~~~l~~~~~~lilDGg~gt~L~~~G~~~~~~lwsa~~ll~~Pe~V~~iH~~yl~AGA~iI~TnTy~as~~~l~~~g~   89 (346)
                      ..|+++|+  ++++||||||||+|+++|++    +|++.+++++||+|+++|++|++||||||+|||||+++.+|.++|+
T Consensus         5 ~~~~~~l~--~~i~ilDGg~GteL~~~G~~----~~~~~~~~~~Pe~V~~iH~~yi~AGAdiI~TnTy~a~~~~l~~~g~   78 (300)
T d3bofa2           5 REVSKLLS--ERVLLLDGAYGTEFMKYGYD----DLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHGL   78 (300)
T ss_dssp             HHHHHHHH--HCCEECCCCSHHHHGGGTCC----SCGGGHHHHCHHHHHHHHHHHHTTTCSEEECSCTTCSHHHHGGGTC
T ss_pred             HHHHHHHc--CCeEEEECHHHHHHHHCCCC----CCChHHhhcCHHHHHHHHHHHHHhCCCEEeeCceeceeChhhcCCc
Confidence            45889998  57999999999999999973    6888889999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcEEEEecCCccCCcCCCCCCCCCCCCCCCHHHHHHH
Q 019107           90 STEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF  169 (346)
Q Consensus        90 ~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~eY~g~~~~~~~~~e~~~~  169 (346)
                      + +++.++|++|+++|++|+.                      ...|+||+||+|.+..       ++. ..+.+++.++
T Consensus        79 ~-~~~~~~~~~Av~la~~a~~----------------------~~~~~g~i~~~g~~~~-------~~~-~~~~~~~~~~  127 (300)
T d3bofa2          79 E-DKLDPIVRNAVRIARRAAG----------------------EKLVFGDIGPTGELPY-------PLG-STLFEEFYEN  127 (300)
T ss_dssp             G-GGHHHHHHHHHHHHHHHHT----------------------TSEEEEEECCCSCCBT-------TTS-SBCHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHHHhh----------------------hccccceEeccccccC-------ccc-cccHHHHHHH
Confidence            7 5799999999999999973                      3579999999997542       222 2689999999


Q ss_pred             HHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCcccCCCCHHHHHHHhhcCCCceEEEEC
Q 019107          170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN  249 (346)
Q Consensus       170 ~~~~i~~l~~~gvD~i~~ET~~~~~E~~a~~~a~~~~~~~~pv~is~~~~~~~~l~~G~~~~~av~~~~~~~~~~avGvN  249 (346)
                      |++|++.|.++|||+|+|||||++.|++++++++++.+...|++++|++++++++.+|+++.+++..+.. .+++++|+|
T Consensus       128 ~~~~~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~~in  206 (300)
T d3bofa2         128 FRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDE-LDIDALGIN  206 (300)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHHHHT-SSCSEEEEE
T ss_pred             HHHHHHHHHhcCcceeeeeeeecHHHHHHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhhhcc-cccchHhhc
Confidence            9999999999999999999999999999999999998755667777777888999999999999988866 579999999


Q ss_pred             CC-ChhhHHHHHHHHhhhcCCcEEEeeCCCCccccccccccccCCCChHHHHHHHHHHHHcCCeEEeecCCCchHHHHHH
Q 019107          250 CT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAI  328 (346)
Q Consensus       250 C~-~p~~~~~~l~~l~~~~~~pl~vypN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ivGGCCGt~P~hI~al  328 (346)
                      |+ .|..+..+++.+....+.|+++|||+|..+....+.|.+   .+|++|++++++|++.|++||||||||+|+||++|
T Consensus       207 c~~~~~~~~~~~~~~~~~~~~~~~vypN~g~~~~~~~~~~~~---~~p~~f~~~~~~w~~~Ga~iIGGCCgt~P~hI~~l  283 (300)
T d3bofa2         207 CSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYP---LKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLF  283 (300)
T ss_dssp             SSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECC---CCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHH
T ss_pred             ccccccchhhhhhhhhccccccccccCCCCCCEeCCCcccCC---CCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHH
Confidence            98 689999999999988999999999999876554444433   57999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCcc
Q 019107          329 SRVLSNKSLPSAN  341 (346)
Q Consensus       329 ~~~~~~~~~~~~~  341 (346)
                      ++.++...|.+++
T Consensus       284 ~~~l~~~~p~~~~  296 (300)
T d3bofa2         284 RKVLGNRKPLQRK  296 (300)
T ss_dssp             HHHHCSCCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            9999988886654
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} Back     information, alignment and structure
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure