Citrus Sinensis ID: 019120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MERQKAQLQERMAVVKDMLRNTEIAVRSFMmlrprflhpnagsassatapsqasgataapsstgqpasssvvpvfdfyrglpkkpsaFLQQTVARFEKYLGEFRQWIEELEQLIlldpdrnssshgsslLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAdqrrrgdgsdpfleADRRETARQEAAAKrvhptlhlpvnsqpsaqvggsltntatgalvapqtsavisassggglslfstpssapassmssslfatpatsaspsslfgsgvspqmsssslfaASTLslfgstvpsfgsttsagaslfstpfasgapsgsgasfgaaskstrpktrtarr
Flexible Loop (DISEMBL)
merqkaqlQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATaapsstgqpasSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAkrvhptlhlpvnsqPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGapsgsgasfgaaskstrpktrtarr
Low Complexity Region (SEG)
MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNagsassatapsqasgataapsstgqPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWieeleqlillDPDRNssshgssllqslPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQtsavisassggglslfstpssapassmssslfatpatsaspsslfGsgvspqmsssslfaastlslfgsTVPSFGSTTSAGASLFSTpfasgapsgsgasfgaasKSTRPKTRTARR
Disordered region (IsUnstruct)
*************VVKDMLRNTEIAVRSFMMLRPRF**********************************VVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD*************QSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA***********************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********ERMAVVKDMLRNTEIAVRSFMMLRPRF********************************SSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQ********************LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF***********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********ERMAVVKDMLRNTEIAVRSFMMLRPRFLHPN*****************************SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD**********LQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEA**************VHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSL***************************************SSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFA***************************
Disordered Region (DISPRO)
**RQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH*******************************SVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAA*KRVHPTLHLPVNSQPSAQVGGSLTN*******************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERQxxxxxxxxxxxxxxxxxxxxxVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q8R332	587	Nucleoporin p58/p45 OS=Mu	yes	no	0.306	0.180	0.350	1e-07
P70581	585	Nucleoporin p58/p45 OS=Ra	yes	no	0.306	0.181	0.342	1e-07
Q9BVL2	599	Nucleoporin p58/p45 OS=Ho	yes	no	0.306	0.176	0.315	9e-07
P84752	361	Peroxidase A (Fragments)	N/A	no	0.112	0.108	0.585	3e-06

>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +     + S+SH +   Q L   +  ++  F
Sbjct: 330 PADYFRILVQQFEVQLQQYRQQIEELENHL---ATQASNSHITP--QDLSMAMQKIYQTF 384

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F EA RR  A++   A RV
Sbjct: 385 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF-EA-RRTEAKKWQNAPRV 436

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.
Mus musculus (taxid: 10090)

>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 328 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 382

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL+ ++   GD  D F EA RR  A++   A RV
Sbjct: 383 VALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVF-EA-RRTEAKKWQNAPRV 434

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 85  PSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFF 144
           P+ + +  V +FE  L ++RQ IEELE  +    +   +SH +   Q L   +  ++  F
Sbjct: 342 PADYFRILVQQFEVQLQQYRQQIEELENHLATQAN---NSHITP--QDLSMAMQKIYQTF 396

Query: 145 VHVAAKAESIHQYVETMKTAYLADQRR-RGDGSDPFLEADRRETARQEAAAKRV 197
           V +AA+ +SIH+ V+ +K  YL  ++   GD  D F    RR  A++     RV
Sbjct: 397 VALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF--ETRRAEAKKWQNTPRV 448

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Homo sapiens (taxid: 9606)

>sp|P84752|PERA_ALOVR Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 2/41 (4%)

Query: 124 SHGSSLL--QSLPQVISNVHIFFVHVAAKAESIHQYVETMK 162
           +HG +L+      +V+SNVH FFVHVAAK ESIHQY+E+M+
Sbjct: 66  THGLTLICISWALRVMSNVHDFFVHVAAKVESIHQYIESMR 106

Aloe vera (taxid: 34199)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
449520531	502	PREDICTED: uncharacterized LOC101220360	0.985	0.679	0.669	1e-120
449448358	504	PREDICTED: uncharacterized protein LOC10	0.985	0.676	0.669	1e-120
449448356	507	PREDICTED: uncharacterized protein LOC10	0.916	0.625	0.660	1e-109
356496828	470	PREDICTED: uncharacterized protein LOC10	0.973	0.717	0.704	1e-107
357483099	489	Peroxidase A [Medicago truncatula] gi|35	0.965	0.683	0.655	1e-105
356537726	485	PREDICTED: uncharacterized protein LOC10	0.976	0.696	0.690	1e-103
297798186	503	hydroxyproline-rich glycoprotein family	0.968	0.666	0.598	1e-101
30690871	513	hydroxyproline-rich glycoprotein family	0.968	0.653	0.601	1e-101
4006864	595	nucleoporin-like protein [Arabidopsis th	0.927	0.539	0.6	4e-95
224096852	486	predicted protein [Populus trichocarpa]	0.904	0.644	0.695	3e-94

>gi|449520531|ref|XP_004167287.1| PREDICTED: uncharacterized LOC101220360 [Cucumis sativus]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/354 (66%), Positives = 279/354 (78%), Gaps = 13/354 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 152 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 211

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 212 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 271

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 272 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 331

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 332 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQAAGLLANSGNHGASTVQQSSTVATPASSG 391

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 392 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 447

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
              FGST PSFG + SAG+SLFSTPFASGA +GSGASFGA SKS++PK+RTARR
Sbjct: 448 STPFGSTAPSFGQSASAGSSLFSTPFASGAATGSGASFGATSKSSKPKSRTARR 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448358|ref|XP_004141933.1| PREDICTED: uncharacterized protein LOC101220360 isoform 2 [Cucumis sativus]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/354 (66%), Positives = 279/354 (78%), Gaps = 13/354 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 154 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 213

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 214 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 273

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 274 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 333

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 334 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQATGLLANSGNHGASTVQQSSTVATPASSG 393

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 394 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 449

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
              FGST PSFG + SAG+SLFSTPFASGA +GSGASFGA SKS++PK+RTARR
Sbjct: 450 STPFGSTAPSFGQSASAGSSLFSTPFASGAATGSGASFGATSKSSKPKSRTARR 503

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448356|ref|XP_004141932.1| PREDICTED: uncharacterized protein LOC101220360 isoform 1 [Cucumis sativus]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/330 (66%), Positives = 257/330 (77%), Gaps = 13/330 (3%)

Query: 2   ERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPS 61
           E QK  LQE MA  K+ML NTE+A+RSFMM+RPRFLH +AG AS+ TAPSQ  GAT    
Sbjct: 154 EHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLG 213

Query: 62  STGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRN 121
           S+GQP S+S+ PVFDFY GLP+KPS FLQQTV+RFEKYL E RQWIE+LEQL++LD +R+
Sbjct: 214 SSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRS 273

Query: 122 SSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLE 181
           +S+  SSL QSLP+++SNVH FFVHVA+K ESIHQY+E+MK+AYLADQRRRGDG++PFLE
Sbjct: 274 ASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLE 333

Query: 182 ADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVIS-ASSG 239
           ADRRETARQEAAAKR HPTLHLP NSQPS Q  G L N+   GA    Q+S V + ASSG
Sbjct: 334 ADRRETARQEAAAKRAHPTLHLPTNSQPSTQATGLLANSGNHGASTVQQSSTVATPASSG 393

Query: 240 GGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSL---- 295
           GGLSLFSTP SAP S+ +SSLF TP  S   SSLFGS  S   + S+LF +S+  L    
Sbjct: 394 GGLSLFSTP-SAP-STTTSSLFMTPTASVQTSSLFGS--SSVAAPSTLFGSSSAPLFSSA 449

Query: 296 ---FGSTVPSFGSTTSAGASLFSTPFASGA 322
              FGST PSFG + SAG+SLFSTPFASG+
Sbjct: 450 STPFGSTAPSFGQSASAGSSLFSTPFASGS 479

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496828|ref|XP_003517267.1| PREDICTED: uncharacterized protein LOC100776992 [Glycine max]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 246/349 (70%), Positives = 283/349 (81%), Gaps = 12/349 (3%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  LQE M+ VKDMLRNTE+AVRSFMMLRPRFLHP+ G+ SSATAPSQ  GAT AP
Sbjct: 131 MERQKTLLQELMSTVKDMLRNTEVAVRSFMMLRPRFLHPSGGT-SSATAPSQTPGATIAP 189

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           SS+ QP ++S+VPVFDFY GLPKKPS FLQQTV RFEKYLGE  QWIEELEQL+LLD +R
Sbjct: 190 SSSSQPTTASIVPVFDFYSGLPKKPSPFLQQTVLRFEKYLGECHQWIEELEQLLLLDSER 249

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+S++GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MK+AYLADQRRRG+ +DPFL
Sbjct: 250 NASANGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRRRGEVNDPFL 309

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQ-TSAVISASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T  AL APQ ++A  S SS
Sbjct: 310 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQAALTAPQTSAATSSLSS 369

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSASP-SSLFGSGVSPQMSSSSLFAASTLSLFG 297
           G G SLFSTPSSAP+SSM SSLF TP  +  P +SLFGS   P        +AST SLFG
Sbjct: 370 GSGFSLFSTPSSAPSSSMLSSLFTTPTPAPGPQTSLFGSTSVPG-------SASTPSLFG 422

Query: 298 STVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
           +T P F STT A  SLFS+PF SGA +GSGASFG  +K+ R K+RTARR
Sbjct: 423 NTTPLF-STTPATNSLFSSPFVSGAATGSGASFGPGTKNQRVKSRTARR 470

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483099|ref|XP_003611836.1| Peroxidase A [Medicago truncatula] gi|355513171|gb|AES94794.1| Peroxidase A [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/360 (65%), Positives = 277/360 (76%), Gaps = 26/360 (7%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  LQE  + VKDMLRNTE+AVRSFM+LRPRF +P+ G ASSATAPSQ  GAT  P
Sbjct: 142 MERQKTLLQELTSAVKDMLRNTEVAVRSFMILRPRFHYPSGG-ASSATAPSQTPGATT-P 199

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           S   QP ++S+VPVFDFY GLPKKPS FLQQT+ RFEKY+GE  QWI+ELEQL+LL+ ++
Sbjct: 200 SLNSQPPATSMVPVFDFYSGLPKKPSPFLQQTILRFEKYIGECHQWIQELEQLLLLESEK 259

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+SS+GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MKTAYLADQRRRG+ +DPFL
Sbjct: 260 NASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYMESMKTAYLADQRRRGEVNDPFL 319

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQTSAVI-SASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T GALV+ QT+A   S S 
Sbjct: 320 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQGALVSQQTAATTPSLSI 379

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSA------SPS------SLFGSGVSPQMSSSS 286
           G G SLF+TPSSAP  S + SLF TP T A      +PS      SLFGS      SSS 
Sbjct: 380 GSGSSLFNTPSSAP--STTPSLFGTPTTPAQGASWPAPSSSTPQGSLFGSA-----SSSL 432

Query: 287 LFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
             A ST SLFG++ P F S T AG S+F +P+ SGA +GSGASFGA  K+ R K+RTARR
Sbjct: 433 PGATSTPSLFGNSTPLFNS-TPAGTSVFPSPYVSGAATGSGASFGA--KNPRSKSRTARR 489

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537726|ref|XP_003537376.1| PREDICTED: uncharacterized protein LOC100805204 [Glycine max]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/349 (69%), Positives = 280/349 (80%), Gaps = 11/349 (3%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAP 60
           MERQK  L E M+ VKDMLRNTE+AVRSFMMLRPRFLHP+ G+ SSATAPSQ  GAT AP
Sbjct: 145 MERQKTLLHELMSTVKDMLRNTEVAVRSFMMLRPRFLHPSGGT-SSATAPSQTPGATIAP 203

Query: 61  SSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDR 120
           SS+ QP ++S+VPVFDFY GLP+KPS FLQQTV RFEKYLGE  QWIEELEQL+LL+ +R
Sbjct: 204 SSSSQPTTASIVPVFDFYSGLPRKPSPFLQQTVLRFEKYLGECHQWIEELEQLLLLESER 263

Query: 121 NSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFL 180
           N+SS+GSSLLQSLP+V++NVH FFVHVAAK ESIHQY+E+MK+AYLADQR RG+ +DPFL
Sbjct: 264 NASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRHRGEVNDPFL 323

Query: 181 EADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNTAT-GALVAPQ-TSAVISASS 238
           EADRRETARQEAA+KRVHPTLHLP NSQPS QV G  +++ T  AL APQ  ++  S SS
Sbjct: 324 EADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQAALPAPQTAASTSSLSS 383

Query: 239 GGGLSLFSTPSSAPASSMSSSLFATPATSASP-SSLFGSGVSPQMSSSSLFAASTLSLFG 297
           G GLSLFSTPSSAP+SSM SSLFATP  +  P +SLFGS      ++      ST SLFG
Sbjct: 384 GSGLSLFSTPSSAPSSSMLSSLFATPTPAPGPQTSLFGS------TTPVPGPVSTPSLFG 437

Query: 298 STVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
           +T P F STT A  SLFS+PF SG  +GSGASFG  +K+ R K+RTARR
Sbjct: 438 NTTPLF-STTPATNSLFSSPFVSGTATGSGASFGPGTKNQRVKSRTARR 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798186|ref|XP_002866977.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297312813|gb|EFH43236.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/354 (59%), Positives = 255/354 (72%), Gaps = 19/354 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 161 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 220

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 221 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVGRFEKYLNECRQWVEELEQLLALD 280

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ +    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 281 SDKYN--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 338

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT GA   PQTS  
Sbjct: 339 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVTGLIASSATPGASNPPQTSVP 398

Query: 234 ISA-SSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSS+FATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 399 TSNPSSGAGFSFLNTPASGP----SSSIFATPSSTAPTSSLFGP--SPTATQTPLFGSSP 452

Query: 293 LSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
            S FGS    FG TT + A    +PF  GA  GSGASFG+ +KS+RPK+RT RR
Sbjct: 453 ASTFGSAQSLFGQTTPSLA--MPSPFG-GATPGSGASFGSMTKSSRPKSRTTRR 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690871|ref|NP_195430.2| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|20260346|gb|AAM13071.1| unknown protein [Arabidopsis thaliana] gi|31711924|gb|AAP68318.1| At4g37130 [Arabidopsis thaliana] gi|332661357|gb|AEE86757.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/354 (60%), Positives = 252/354 (71%), Gaps = 19/354 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ S    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 291 SDKYS--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT G    PQTS  
Sbjct: 349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQTSVP 408

Query: 234 ISA-SSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSSLFATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 409 TSNPSSGAGFSFLNTPASGP----SSSLFATPSSTAPTSSLFGP--SPTPTQTPLFGSSP 462

Query: 293 LSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAASKSTRPKTRTARR 346
            S FGST   FG TT    SL       GA  GSGASFG+ +KS+RPK+RT RR
Sbjct: 463 ASTFGSTQSLFGQTT---PSLTMPSQFGGATPGSGASFGSMTKSSRPKSRTTRR 513

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006864|emb|CAB16782.1| nucleoporin-like protein [Arabidopsis thaliana] gi|7270662|emb|CAB80379.1| nucleoporin-like protein [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 240/340 (70%), Gaps = 19/340 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH--PNAGSASSATAPSQASGATA 58
           M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H     G  S  + PSQ  G   
Sbjct: 171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query: 59  APSSTGQP-ASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLD 117
           AP+S+GQ  A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW+EELEQL+ LD
Sbjct: 231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query: 118 PDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
            D+ S    +SLL+SLP+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct: 291 SDKYS--RHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query: 178 PFLEADRRETARQEAAAKRVHPTLHLP---VNSQPSAQVGGSLTNTAT-GALVAPQTSAV 233
           PFLEADRRETA+QEAAAKRVHPTLHLP    ++QPS QV G + ++AT G    PQTS  
Sbjct: 349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQTSVP 408

Query: 234 ISA-SSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAAST 292
            S  SSG G S  +TP+S P    SSSLFATP+++A  SSLFG   SP  + + LF +S 
Sbjct: 409 TSNPSSGAGFSFLNTPASGP----SSSLFATPSSTAPTSSLFGP--SPTPTQTPLFGSSP 462

Query: 293 LSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGA 332
            S FGST   FG TT    SL       GA  GSGASFG+
Sbjct: 463 ASTFGSTQSLFGQTT---PSLTMPSQFGGATPGSGASFGS 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096852|ref|XP_002310761.1| predicted protein [Populus trichocarpa] gi|222853664|gb|EEE91211.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 231/332 (69%), Positives = 255/332 (76%), Gaps = 19/332 (5%)

Query: 1   MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGS-ASSATAPSQASGATAA 59
           MERQKA LQE M  VKDMLRNTE+AVRSFMML PRFLH NAG  AS+ATAPSQ  G T  
Sbjct: 157 MERQKALLQELMTNVKDMLRNTEMAVRSFMMLHPRFLHSNAGGGASNATAPSQPPGTTGI 216

Query: 60  PSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPD 119
           P ST QPASSS+VPVFDFY GLPKKPS FLQQTVARFEKYLGE  QWIEELEQL+LLD +
Sbjct: 217 PGSTSQPASSSIVPVFDFYSGLPKKPSPFLQQTVARFEKYLGECSQWIEELEQLLLLDSE 276

Query: 120 RNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPF 179
           RNSS  GSSLLQSLP+V+SNVH FFVHVAAK ESIHQY+E+MKTAYL DQRRRGDG+DPF
Sbjct: 277 RNSSHPGSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLVDQRRRGDGNDPF 336

Query: 180 LEADRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSL-TNTATGALVAPQ---TSAVIS 235
           LEADRRE AR+EAAAKR HPTLHLP NSQPS Q  G   ++  + A  APQ    +A   
Sbjct: 337 LEADRRERARKEAAAKRAHPTLHLPANSQPSTQGAGLFASSATSSASTAPQASTATAPAP 396

Query: 236 ASSGGGLSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQM------------S 283
           ASSG   SLF+T  S P+SSMSSSLFATP TSA  S+LFGS  +P +            S
Sbjct: 397 ASSGNAFSLFNT-PSVPSSSMSSSLFATPTTSAPVSTLFGSAATPSLFGSATQAFGASSS 455

Query: 284 SSSLFAASTLSLFGSTVPSFGSTTSAGASLFS 315
           + +L +AST SLFGST P+FG T SAG SLFS
Sbjct: 456 APALGSASTPSLFGSTTPAFG-TISAGGSLFS 486

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2115055	513	AT4G37130 [Arabidopsis thalian	0.656	0.442	0.546	1.8e-60

TAIR|locus:2115055 AT4G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 129/236 (54%), Positives = 149/236 (63%)

Query:     1 MERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLH---PNXXXXXXXXXXXXXXXXX 57
             M+RQKA L E M V KDMLRN EIAVRSFMML+PRF H                      
Sbjct:   171 MDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNP 230

Query:    58 XXXXXXXXPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWXXXXXXXXXXD 117
                      A ++ V V DFYRG+PKKP+AFL QTV RFEKYL E RQW          D
Sbjct:   231 APASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALD 290

Query:   118 PDRNXXXXXXXXXXXXPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSD 177
              D+             P+V+SNVH FFVHVAAK ESIHQY+E+M+T+YLADQRRRG+  D
Sbjct:   291 SDK--YSRHASLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHD 348

Query:   178 PFLEADRRETARQEAAAKRVHPTLHLPVNS---QPSAQVGGSLTNTAT-GALVAPQ 229
             PFLEADRRETA+QEAAAKRVHPTLHLP ++   QPS QV G + ++AT G    PQ
Sbjct:   349 PFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQVAGLIASSATPGGSNPPQ 404

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00004031001 SubName- Full=Chromosome undetermined scaffold_585, whole genome shotgun sequence; (558 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
PRK08392	215	PRK08392, PRK08392, hypothetical protein; Provisio	4e-04

>gnl|CDD|169423 PRK08392, PRK08392, hypothetical protein; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 92  TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHG----SSLLQSLPQVISNVHIFFVHV 147
           T ++F  Y+ E RQW EE E ++L   + N + +G        + L  VI++VH +F   
Sbjct: 41  TPSKFNAYINEIRQWGEESEIVVLAGIEANITPNGVDITDDFAKKLDYVIASVHEWF--- 97

Query: 148 AAKAESIHQYVETMKTAYLAD 168
                  H+Y+E +K A + +
Sbjct: 98  --GRPEHHEYIELVKLALMDE 116

Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	96.2
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	96.09
KOG0774	334	consensus Transcription factor PBX and related HOX	95.62
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	95.53
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	95.13
PF06013	86	WXG100: Proteins of 100 residues with WXG; InterPr	94.15
PF10392	132	COG5: Golgi transport complex subunit 5; InterPro:	93.3
PF14644	208	DUF4456: Domain of unknown function (DUF4456)	92.19
PF00435	105	Spectrin: Spectrin repeat; InterPro: IPR002017 Spe	91.23
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	88.59
PF14644	208	DUF4456: Domain of unknown function (DUF4456)	88.28
PF13256	125	DUF4047: Domain of unknown function (DUF4047)	85.81
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	85.73
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	85.58
PRK04406	75	hypothetical protein; Provisional	85.08
smart00150	101	SPEC Spectrin repeats.	84.25
PRK13879	253	conjugal transfer protein TrbJ; Provisional	83.52
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	83.44
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	83.04
PF12210	96	Hrs_helical: Hepatocyte growth factor-regulated ty	80.81
PRK04325	74	hypothetical protein; Provisional	80.2

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.014  Score=60.90  Aligned_cols=8  Identities=38%  Similarity=0.887  Sum_probs=3.4

Q ss_pred             CCCCCCCC
Q 019120          268 ASPSSLFG  275 (346)
Q Consensus       268 ~~~~~lfg  275 (346)
                      +-+++|||
T Consensus        47 taTt~~fG   54 (508)
T KOG3091|consen   47 TATTGLFG   54 (508)
T ss_pred             Cccccccc
Confidence            33444444

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=96.09  E-value=0.036  Score=46.93  Aligned_cols=70  Identities=36%  Similarity=0.499  Sum_probs=34.6

Q ss_pred             CCcccCCC---CCCCCCCCCCCCCCCCCCCCcccCcccccccCCCCCCCCCcCCCCccccccCCCCCCCCCCCCcccCCC
Q 019120          258 SSLFATPA---TSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAPSGSGASFGAAS  334 (346)
Q Consensus       258 ~~lf~~~~---t~~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p~f~s~~~~g~slf~~pf~~g~~~~~~~~~~~~~  334 (346)
                      .+|||...   ++....+|||..-..      -....+.+|||...+.  .....+.+||...=.--....+|+.||...
T Consensus        23 ~~lFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~LFG~~~~~--~~~~~~~~lFG~~~~~~~~~~~~~lFG~~~   94 (113)
T PF13634_consen   23 GSLFGSSTPQTTSTSSGSLFGSTSTQ------TQATTTGGLFGSSNNT--QQQPSSGSLFGSTTATQQATPSGGLFGQSQ   94 (113)
T ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCC------CCCCCCCcccCCCCCC--CCCCCCCcccCCCCCCCCcCCCCcccCCCC
Confidence            37777654   345666777752111      0123445677765533  222235566643332223455666676554


Q ss_pred             C
Q 019120          335 K  335 (346)
Q Consensus       335 ~  335 (346)
                      .
T Consensus        95 ~   95 (113)
T PF13634_consen   95 P   95 (113)
T ss_pred             C
Confidence            3

>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]

Probab=95.62  E-value=0.21  Score=49.18  Aligned_cols=74  Identities=14%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 019120           93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAE-SIHQYVETMKTAYLADQRR  171 (346)
Q Consensus        93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva-~LHe~Ve~lKe~YL~~~Rr  171 (346)
                      -+++|++=+.|+.|.+-++.+|+-++.  -.+   ..++++...+..+|.-|.++--+|. ..-++|=.+|..||..||+
T Consensus       117 ~~ElekyeqaCneftthV~nlL~eQsr--~RP---i~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~r~ldarRK  191 (334)
T KOG0774|consen  117 HNELEKYEQACNEFTTHVMNLLREQSR--TRP---IMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRSRFLDARRK  191 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc--cCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666667788888889999986653  223   4599999999999999999976664 3456699999999999984

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=95.53  E-value=0.056  Score=45.72  Aligned_cols=66  Identities=33%  Similarity=0.478  Sum_probs=31.6

Q ss_pred             CcccccCCCCCCcccCCCcccCCCC---CCCCCCCCCCCCCCCCCCCcccCcccccccCCCCCCCCCcCCCCccccc
Q 019120          242 LSLFSTPSSAPASSMSSSLFATPAT---SASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFS  315 (346)
Q Consensus       242 ~s~f~tpssaps~~~~~~lf~~~~t---~~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p~f~s~~~~g~slf~  315 (346)
                      -+||.............+|||...+   ....++|||.....      --..++.+|||.....-  ....+.+||.
T Consensus        23 ~~lFG~~~~~~~~~~~~~LFG~~~~~~~~~~~~~LFG~~~~~------~~~~~~~~lFG~~~~~~--~~~~~~~lFG   91 (113)
T PF13634_consen   23 GSLFGSSTPQTTSTSSGSLFGSTSTQTQATTTGGLFGSSNNT------QQQPSSGSLFGSTTATQ--QATPSGGLFG   91 (113)
T ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCcccCCCCCC------CCCCCCCcccCCCCCCC--CcCCCCcccC
Confidence            4566555431222223588886544   36677888853211      11233445666544211  1223556663

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.13  E-value=0.077  Score=55.56  Aligned_cols=26  Identities=38%  Similarity=0.506  Sum_probs=12.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcccCcccccccCCCCC
Q 019120          268 ASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVP  301 (346)
Q Consensus       268 ~~~~~lfgs~~s~~~~tp~~g~~~~~~~fg~~~p  301 (346)
                      +...++||+       +|.+|++.+ ++||.+.-
T Consensus        33 a~~g~~fgs-------~p~~~taTt-~~fG~~~~   58 (508)
T KOG3091|consen   33 ASGGGAFGS-------QPTTGTATT-GLFGANQA   58 (508)
T ss_pred             ccccccccc-------CCCCCCccc-cccccccC
Confidence            444455554       454544444 35555443

>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis

Probab=94.15  E-value=0.79  Score=34.08  Aligned_cols=78  Identities=12%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL  166 (346)
Q Consensus        87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL  166 (346)
                      +=+.+++..|+.....++..+++|+..+......= .+   ..-......+..++..|-.+...|..+.+.|...++.|.
T Consensus         7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W-~G---~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~   82 (86)
T PF06013_consen    7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASW-QG---EAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYE   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGB-TS---STSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-Cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888888888888888443211 11   235677889999999999999999999999999999987


Q ss_pred             HH
Q 019120          167 AD  168 (346)
Q Consensus       167 ~~  168 (346)
                      ..
T Consensus        83 ~~   84 (86)
T PF06013_consen   83 QA   84 (86)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking

Probab=93.30  E-value=0.73  Score=39.69  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             ccHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhh
Q 019120           85 PSAFLQQTVA----------RFEKYLGEFRQWIEELEQLIL  115 (346)
Q Consensus        85 Ps~YF~qlV~----------~FE~rL~~YRqqIEELE~~L~  115 (346)
                      |..|-..++.          +++..|......|+||+++|+
T Consensus        10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~   50 (132)
T PF10392_consen   10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIR   50 (132)
T ss_pred             HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4568888888          899999999999999999988

Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].

>PF14644 DUF4456: Domain of unknown function (DUF4456)

Probab=92.19  E-value=1.5  Score=40.67  Aligned_cols=96  Identities=22%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQS-LPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL  166 (346)
Q Consensus        88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~-L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL  166 (346)
                      |..+.-+-.++-+++||.|++.+|..|.....        ..... +.....++...--.+.++.+...+..+++|+.+.
T Consensus        41 ~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~--------lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~  112 (208)
T PF14644_consen   41 YQEQADEYHNSCLQELRNQVERLEELLPKVPE--------LVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHE  112 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455566677788888888772221        11111 1233444444444566666677777778888888


Q ss_pred             HHHH-hcCCCCCccchhh---HHHHHHHHH
Q 019120          167 ADQR-RRGDGSDPFLEAD---RRETARQEA  192 (346)
Q Consensus       167 ~~~R-r~GD~~DPFaEad---r~Eaa~q~~  192 (346)
                      +.-| .+|++.+-= |.+   .+|.+|+..
T Consensus       113 ~~LrP~LghP~~~~-eL~~L~~~E~~R~~~  141 (208)
T PF14644_consen  113 QQLRPNLGHPDNRQ-ELESLCEREEKRQKE  141 (208)
T ss_pred             HhCCCcCCCCCCHH-HHHHHHHHHHHHHHH
Confidence            8777 688665432 333   344444443

>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure

Probab=91.23  E-value=5.1  Score=30.19  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           92 TVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (346)
Q Consensus        92 lV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~  168 (346)
                      ...+|+..+..+..||.+.|..|.....   .    ..+.+|...+.    -+-.+-..+...+++|+.+.+.--.+
T Consensus         2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~---~----~~~~~~~~~~~----~~~~~~~ei~~~~~~l~~l~~~~~~L   67 (105)
T PF00435_consen    2 QLQQFQQEADELLDWLQETEAKLSSSEP---G----SDLEELEEQLK----KHKELQEEIESRQERLESLNEQAQQL   67 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCTH---S----SSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCC---C----CCHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999952221   0    22444444444    33333345566666666666655555

These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=88.59  E-value=4  Score=41.62  Aligned_cols=79  Identities=10%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL  166 (346)
Q Consensus        87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL  166 (346)
                      +.+.+.++++++++..++.++++|++.|.........   ...+......++.+.+.+..+-.+++.|.++++++++...
T Consensus       330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~  406 (451)
T PF03961_consen  330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQ---GKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE  406 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999998733321000   1235677888888888899999999999999888887766


Q ss_pred             HH
Q 019120          167 AD  168 (346)
Q Consensus       167 ~~  168 (346)
                      +.
T Consensus       407 ~~  408 (451)
T PF03961_consen  407 RS  408 (451)
T ss_pred             hh
Confidence            55

The proteins are in the region of 500-600 amino acid residues in length.

>PF14644 DUF4456: Domain of unknown function (DUF4456)

Probab=88.28  E-value=3.6  Score=38.07  Aligned_cols=49  Identities=12%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHH-hcCCCCCccchhhHHHHHHHHHHhhcCCccccCCCC
Q 019120          158 VETMKTAYLADQR-RRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVN  206 (346)
Q Consensus       158 Ve~lKe~YL~~~R-r~GD~~DPFaEadr~Eaa~q~~aa~Rv~Pt~~lPA~  206 (346)
                      ++.+++.|...-. .+.+..+.|..--+.-...+.+|...++|++.-|..
T Consensus        75 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~  124 (208)
T PF14644_consen   75 FESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDN  124 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCC
Confidence            3344444444222 455555556444455567778888889999998865

>PF13256 DUF4047: Domain of unknown function (DUF4047)

Probab=85.81  E-value=9.1  Score=33.92  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEE----LEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTA  164 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEE----LE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~  164 (346)
                      |=++|+.++++..+.+++|+.    |+..+..           .+.+.|...+....+.+..+++..+.||.--.++++.
T Consensus        25 FPkTI~~L~e~A~qh~~~Il~eye~mk~~~~~-----------~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~   93 (125)
T PF13256_consen   25 FPKTIDTLKEQAEQHKEQILHEYEGMKKKVKV-----------TSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDY   93 (125)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999864    4444431           2378999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 019120          165 YLADQRR  171 (346)
Q Consensus       165 YL~~~Rr  171 (346)
                      |+.....
T Consensus        94 ynq~qe~  100 (125)
T PF13256_consen   94 YNQIQEE  100 (125)
T ss_pred             HHHHHHH
Confidence            9998873

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=85.73  E-value=8.3  Score=30.76  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           88 FLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT  163 (346)
Q Consensus        88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe  163 (346)
                      |+..++.++.+-|.+.++.|+++|+.+.            ....++...+++.++.--.+-.+++.+..-++.+++
T Consensus        16 ~l~~~l~~l~~~l~~~~~ti~~l~~~~~------------~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~   79 (90)
T PF06103_consen   16 FLIKVLKKLKKTLDEVNKTIDTLQEQVD------------PITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVAD   79 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            6677788888888888888888888876            123566777888887777777777776666555554

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.58  E-value=2.4  Score=41.48  Aligned_cols=60  Identities=20%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           99 YLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLA  167 (346)
Q Consensus        99 rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~  167 (346)
                      .+++..++|++||+-+.-.+         -.+++|...++.|++..=.+.+.|+..|+.|+...+.-.+
T Consensus       174 ~ieeR~q~I~~lE~dI~dvN---------~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k  233 (269)
T KOG0811|consen  174 LIEEREQAIEQLEADIIDVN---------EIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK  233 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44558889999999988443         2489999999999999999999999999999988775433

>PRK04406 hypothetical protein; Provisional

Probab=85.08  E-value=2.9  Score=33.53  Aligned_cols=49  Identities=12%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120          103 FRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVET  160 (346)
Q Consensus       103 YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~  160 (346)
                      ..+.|++||-.|.-..         .+..+|-.+|-.|++-.-.|-.+|..|.++++.
T Consensus         9 le~Ri~~LE~~lAfQE---------~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          9 LEERINDLECQLAFQE---------QTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566666655221         234566666767766666666666666665544

>smart00150 SPEC Spectrin repeats

Probab=84.25  E-value=15  Score=27.53  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           95 RFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQR  170 (346)
Q Consensus        95 ~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~~R  170 (346)
                      +|++.+.....||++.|..|.....      + ..+..+...++    .+-.+-..+...++.|+.+....-.+..
T Consensus         2 ~f~~~~~~l~~Wl~~~e~~l~~~~~------~-~d~~~~~~~~~----~~~~~~~e~~~~~~~v~~~~~~~~~L~~   66 (101)
T smart00150        2 QFLRDADELEAWLSEKEALLASEDL------G-KDLESVEALLK----KHEALEAELEAHEERVEALNELGEQLIE   66 (101)
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCCC------C-CCHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5889999999999999987763221      1 12333333333    3333334556666666666665444444

>PRK13879 conjugal transfer protein TrbJ; Provisional

Probab=83.52  E-value=9.6  Score=37.06  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             ccchhhccCCCCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120           72 VPVFDFYRGLPKKPSAFL------QQTVARFEKYLGEFRQWIEELEQLILLD  117 (346)
Q Consensus        72 ~pv~Dfys~~p~~Ps~YF------~qlV~~FE~rL~~YRqqIEELE~~L~s~  117 (346)
                      .||+|        |..|.      .+.|.++.++++.|+.+|.++|+.++..
T Consensus        28 ipV~D--------~an~aqni~~a~~~v~q~~~Qi~Qlq~Qiqqy~nql~Nl   71 (253)
T PRK13879         28 IPVID--------GTNLSQNIMTAIESVAQTLKQIEQYQTQLQQYENMLQNT   71 (253)
T ss_pred             CCeee--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48988        45664      4578888999999999999999999833

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=83.44  E-value=10  Score=35.64  Aligned_cols=90  Identities=11%  Similarity=0.067  Sum_probs=58.4

Q ss_pred             chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Q 019120           74 VFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAES  153 (346)
Q Consensus        74 v~Dfys~~p~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~  153 (346)
                      -+|.|..+..--..-+-.-+..|+++++..++.+-.+|.-|+..+.       ..+...|+..++.+..-.--.--||..
T Consensus        69 ~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s-------~Lt~eemQe~i~~L~kev~~~~erl~~  141 (201)
T KOG4603|consen   69 DQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS-------ALTTEEMQEEIQELKKEVAGYRERLKN  141 (201)
T ss_pred             cHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688887655556667777899999999999999999999884432       134455555555544443333334444


Q ss_pred             HHH-----------HHHHHHHHHHHHHH
Q 019120          154 IHQ-----------YVETMKTAYLADQR  170 (346)
Q Consensus       154 LHe-----------~Ve~lKe~YL~~~R  170 (346)
                      |.+           +|.++.+.|.+.||
T Consensus       142 ~k~g~~~vtpedk~~v~~~y~~~~~~wr  169 (201)
T KOG4603|consen  142 IKAGTNHVTPEDKEQVYREYQKYCKEWR  169 (201)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            432           35555666777776

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=83.04  E-value=32  Score=31.82  Aligned_cols=28  Identities=29%  Similarity=0.337  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILL  116 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s  116 (346)
                      ..++|.++..++.+||+++.|||++|..
T Consensus        14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~   41 (182)
T PF15035_consen   14 QAQLVQRLQAKVLQYRKRCAELEQQLSA   41 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999953

>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS)

Probab=80.81  E-value=9.2  Score=32.55  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCc-cccccHHHHHHHHHHHHHHH
Q 019120           98 KYLGEFRQWIEELEQLILLDPDRNSSSHGS-SLLQSLPQVISNVHIFFVHV  147 (346)
Q Consensus        98 ~rL~~YRqqIEELE~~L~s~s~~~~S~~gs-~tpQ~L~~~L~~~hq~FvaL  147 (346)
                      +=+..++.+||-..+-|++.+.+..| +.. .+.|.|=..|.++|--.+..
T Consensus         2 ef~~~l~~~v~if~nRmksns~RGrs-IanDsaVqsLF~~lt~mH~~LL~~   51 (96)
T PF12210_consen    2 EFCNTLRSSVEIFVNRMKSNSSRGRS-IANDSAVQSLFQTLTAMHPQLLKY   51 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---GGG-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcCCC-CcccHHHHHHHHHHHHHHHHHHHH
Confidence            44567788888888888877665443 221 36677777777777666544

It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.

>PRK04325 hypothetical protein; Provisional

Probab=80.20  E-value=13  Score=29.55  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120          107 IEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETM  161 (346)
Q Consensus       107 IEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~l  161 (346)
                      |++||-.|.=..         .+.++|-.+|-.|+.-.-.|..+|..|+++++++
T Consensus        11 i~~LE~klAfQE---------~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325         11 ITELEIQLAFQE---------DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677776665221         3456677777777777777777777777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	2e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-05

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A Length = 93

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 80  GLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISN 139
           G    P+ + +  V +FE  L ++RQ IEELE  +    + +  +      Q L   +  
Sbjct: 1   GSHMAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHIT-----PQDLSMAMQK 55

Query: 140 VHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGS 176
           ++  FV +AA+ +SIH+ V+ +K  YL+ ++     +
Sbjct: 56  IYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA 92

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.0 bits (111), Expect = 7e-06
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 209  PSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSS------APASSMSSSLFA 262
            P  Q G           +    S      S G  S FS+  S      +P+ S SS  ++
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566

Query: 263  TPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGA 322
            T + +  PSS   S  SP  S +S   + T   +  T PS+ S TS   S  S  ++  +
Sbjct: 1567 T-SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SATSPSYSPTSPSYSPTS 1624

Query: 323  PSGSGAS 329
            PS S  S
Sbjct: 1625 PSYSPTS 1631

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 204  PVNSQPSAQVGGSLTNTATGALVAPQTSAVISASSGGGLSLFSTPSSAPASSMSSSLFAT 263
            P     S       ++  +       + +   +S G   S    PSS P+ S +S  ++ 
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSPGY-GLTSPSYSPSSPGYSTSPAYMPSS-PSYSPTSPSYSP 1587

Query: 264  PATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVPSFGSTTSAGASLFSTPFASGAP 323
             + S SP+S   S  SP  S++S   + T   +  T PS+  T        S  ++  +P
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT--------SPSYSPTSP 1639

Query: 324  SGSGAS 329
            S S  S
Sbjct: 1640 SYSPTS 1645

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 9/166 (5%)

Query: 183  DRRETARQEAAAKRVHPTLHLPVNSQPSAQVGGSLTNT-ATGALVAPQTSAVISASSGGG 241
            +++ T  ++     V P  +          V   L  +    +      +   +A  G  
Sbjct: 1456 EQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD 1515

Query: 242  LSLFSTPSSAPASSMSSSLFATPATSASPSSLFGSGVSPQMSSSSLFAASTLSLFGSTVP 301
                ++P  A   + +S  F   +   SP+S   S  SP  S +S   + T   +  T P
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSP 1575

Query: 302  SFG------STTSAGASLFSTPFASGAPSGSGAS--FGAASKSTRP 339
            S+       S TS   S  S  ++  +PS S  S  +   S S  P
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	99.95
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	87.84
3fav_B	94	ESAT-6, 6 kDa early secretory antigenic target; co	86.45
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.59
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	85.31
4ioe_A	93	Secreted protein ESXB; structural genomics, PSI-bi	83.26
3uun_A	119	Dystrophin; triple helical, cell structure and sta	82.86
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	82.36
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	82.26
3fav_A	101	ESAT-6-like protein ESXB; complex, operon structur	82.12
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	82.11
3f1i_H	98	Hepatocyte growth factor-regulated tyrosine kinas	81.95
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	81.69

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A

Probab=99.95  E-value=1.5e-28  Score=200.47  Aligned_cols=88  Identities=32%  Similarity=0.479  Sum_probs=79.2

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK  162 (346)
Q Consensus        83 ~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK  162 (346)
                      ..|++||+++|++||+||++||+||||||+||.+.+.  .+   .++||+|+.+|+++|++||+||+||+.||++|+.+|
T Consensus         4 ~~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~--~~---~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~K   78 (93)
T 3t98_B            4 MAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQAN--NS---HITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLK   78 (93)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HT---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999997653  12   267999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hcCCC
Q 019120          163 TAYLADQR-RRGDG  175 (346)
Q Consensus       163 e~YL~~~R-r~GD~  175 (346)
                      ++||++|| ++||.
T Consensus        79 e~Yl~~rr~~~~d~   92 (93)
T 3t98_B           79 EQYLSYRKMFLGDA   92 (93)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999 78884

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=87.84  E-value=3  Score=31.33  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=58.8

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           83 KKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMK  162 (346)
Q Consensus        83 ~~Ps~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lK  162 (346)
                      +.-.+=+..++.+|...-..++..+.+|+..|..... .=.  | .+-+.....++..+..+..+...|+.|.+.|....
T Consensus         8 ~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~-~W~--G-~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a   83 (99)
T 3zbh_A            8 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG-IWE--G-ASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSA   83 (99)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667888888888888888888888888874321 001  1 23455667777788888888888888888888888


Q ss_pred             HHHHHHH
Q 019120          163 TAYLADQ  169 (346)
Q Consensus       163 e~YL~~~  169 (346)
                      +.|-+.-
T Consensus        84 ~~~~~~d   90 (99)
T 3zbh_A           84 TILEDTD   90 (99)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8886643

>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B

Probab=86.45  E-value=4.3  Score=30.59  Aligned_cols=77  Identities=6%  Similarity=0.037  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~  168 (346)
                      +...+.++......++..+++|+..|......=.+    ..-..-...+...++.+..|-.-|+.|.+.|+...+.|-..
T Consensus        10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G----~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~~   85 (94)
T 3fav_B           10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGG----SGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAST   85 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788999999999999999999998844321111    23456778888888888888888888888888888888764


Q ss_pred             H
Q 019120          169 Q  169 (346)
Q Consensus       169 ~  169 (346)
                      -
T Consensus        86 d   86 (94)
T 3fav_B           86 E   86 (94)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.59  E-value=19  Score=37.39  Aligned_cols=25  Identities=4%  Similarity=-0.004  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHh
Q 019120            5 KAQLQERMAVVKDMLRNTEIAVRSF   29 (346)
Q Consensus         5 k~~~~~l~~~V~~~lrntE~Avrs~   29 (346)
                      +.+|++|+..|.++-+|--.+-..|
T Consensus        63 tkrINELKnqLEdlsKnsKdseqy~   87 (562)
T 3ghg_A           63 TNRINKLKNSLFEYQKNNKDSHSLT   87 (562)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhchhHHHHH
Confidence            3467777777777777666665444

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=85.31  E-value=7.3  Score=29.82  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120           93 VARFEKYLGEFRQWIEELEQLILLD  117 (346)
Q Consensus        93 V~~FE~rL~~YRqqIEELE~~L~s~  117 (346)
                      +.+|+..|..+..||.+.|..|...
T Consensus         4 L~~f~~~l~el~~WL~e~e~~l~~~   28 (118)
T 3uul_A            4 LDSYQIALEEVLTWLLSAEDTFQEQ   28 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999999999999998854

>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}

Probab=82.86  E-value=8.4  Score=29.33  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcC
Q 019120           93 VARFEKYLGEFRQWIEELEQLILLD  117 (346)
Q Consensus        93 V~~FE~rL~~YRqqIEELE~~L~s~  117 (346)
                      +.+|+..+..+..||.+.|..|...
T Consensus         4 L~~F~~~l~el~~WL~~~e~~l~~~   28 (119)
T 3uun_A            4 LDRYQTALEEVLSWLLSAEDTLQAQ   28 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999998854

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=82.36  E-value=7.4  Score=28.99  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           87 AFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYL  166 (346)
Q Consensus        87 ~YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL  166 (346)
                      +=+..++.+|......++..+++|+..+...... =.  | .+-+.-...+...+..+-.|..-|+.|-+.|....+.|-
T Consensus         9 ~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~-W~--G-~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~   84 (97)
T 2vs0_A            9 EEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN-WE--G-QAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQ   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SC--S-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467788888888888888888888888743210 01  1 123455666677777777777777777777777777776


Q ss_pred             HH
Q 019120          167 AD  168 (346)
Q Consensus       167 ~~  168 (346)
                      +.
T Consensus        85 ~~   86 (97)
T 2vs0_A           85 EQ   86 (97)
T ss_dssp             C-
T ss_pred             HH
Confidence            53

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=82.26  E-value=7.6  Score=35.54  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLIL  115 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~  115 (346)
                      +.+++.+|..+...+..||.++++.|+
T Consensus       126 Le~La~kf~rka~~~e~~L~~~~~~L~  152 (235)
T 2odv_A          126 LQRIVTKLQMEAGLAEEQLNQADALLQ  152 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999995

>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A

Probab=82.12  E-value=9  Score=29.38  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~  168 (346)
                      +...+.+|+..-.++...+++|+..+......= .  | ..-+.-...+...++.+..|..-|+.|.+.|....+.|-+.
T Consensus        12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W-~--G-~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~   87 (101)
T 3fav_A           12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQW-R--G-AAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRA   87 (101)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-C--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-c--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999987443211 1  1 23455667778888888888888888888888888887664

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}

Probab=82.11  E-value=9.9  Score=38.93  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019120           86 SAFLQQTVARFEKYLGEFRQWIEELEQLILL  116 (346)
Q Consensus        86 s~YF~qlV~~FE~rL~~YRqqIEELE~~L~s  116 (346)
                      ..|.+-+.+-+++.|..|++.|-+||+.+..
T Consensus        83 g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~  113 (677)
T 3rip_A           83 GIYLRAFCTGLDSVLQPYRQALLDLEQEFLG  113 (677)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4699999999999999999999999999874

>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}

Probab=81.95  E-value=4.5  Score=33.33  Aligned_cols=50  Identities=20%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc-cccccHHHHHHHHHHHHHHH
Q 019120           97 EKYLGEFRQWIEELEQLILLDPDRNSSSHGS-SLLQSLPQVISNVHIFFVHV  147 (346)
Q Consensus        97 E~rL~~YRqqIEELE~~L~s~s~~~~S~~gs-~tpQ~L~~~L~~~hq~FvaL  147 (346)
                      |+=+..++.+||-..+-|++.+.+..+ +.. .+.|.|=..|..+|-..+..
T Consensus         3 ~ef~~~l~~sv~if~NRmksn~~RGrs-i~nDssVQsLF~~lt~MH~~Ll~~   53 (98)
T 3f1i_H            3 EQFLKALQNAVTTFVNRMKSNHMRGRS-ITNDSAVLSLFQSINGMHPQLLEL   53 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCC-CcccHHHHHHHHHHHHHHHHHHHH
Confidence            455667788888888888866644333 221 36777777777777655543

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.69  E-value=8.6  Score=32.00  Aligned_cols=65  Identities=8%  Similarity=0.101  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT  163 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe  163 (346)
                      |.++.+.....|..+-..|-.||+.|...+-          ++|-...-+++|+.....-..+..+.+.|+++.+
T Consensus        12 f~~l~~~is~~I~~In~~vs~l~r~v~~LGT----------~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~   76 (130)
T 2dnx_A           12 FSSIIQTCSGNIQRISQATAQIKNLMSQLGT----------KQDSSKLQENLQQLQHSTNQLAKETNELLKELGS   76 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999996552          3344444555555554444445555555544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1quua2	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	89.55
d1u5pa1	110	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	89.02
d1quua1	124	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	88.87
d1s35a1	106	Spectrin beta chain {Human (Homo sapiens) [TaxId:	84.51
d1wa8a1	99	ESAT-6 like protein EsxB {Mycobacterium tuberculos	83.07
d1u5pa2	101	Spectrin alpha chain {Chicken (Gallus gallus) [Tax	80.68

>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=2.1  Score=31.91  Aligned_cols=94  Identities=14%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~  168 (346)
                      ..++..+|.+.+..+..||++.|.+|....-  +     ..+..| ..+.+-|+.|.   ..|..-..+|+.+....-.+
T Consensus         3 ~~q~~~~F~~~a~~l~~Wl~~~e~~l~~~~~--g-----~dl~~v-~~ll~kh~~fe---~el~~~~~~v~~l~~~~~~L   71 (124)
T d1quua2           3 IDQLHLEFAKRAAPFNNWMEGAMEDLQDMFI--V-----HSIEEI-QSLITAHEQFK---ATLPEADGERQSIMAIQNEV   71 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTCCCC--C-----CSTTTH-HHHHHHHHHHH---THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C-----CCHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999999999999884332  1     235554 44455566664   23555566666666665554


Q ss_pred             HH---hcCC---CCCccchhhHHHHHHHHHH
Q 019120          169 QR---RRGD---GSDPFLEADRRETARQEAA  193 (346)
Q Consensus       169 ~R---r~GD---~~DPFaEadr~Eaa~q~~a  193 (346)
                      .+   ...|   .++|..+....+..++|..
T Consensus        72 ~~~~~~~~~~~~~~~~~i~~~~~~L~~~W~~  102 (124)
T d1quua2          72 EKVIQSYNIRISSSNPYSTVTMDELRTKWDK  102 (124)
T ss_dssp             HHHHHHSCTTSCCSCTTCSSCHHHHHHHHHH
T ss_pred             HHhcchhhccccccchHHHHHHHHHHHHHHH
Confidence            44   2222   2334444334444555554

>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.02  E-value=1.7  Score=31.45  Aligned_cols=65  Identities=15%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           93 VARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLAD  168 (346)
Q Consensus        93 V~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe~YL~~  168 (346)
                      ..+|+..+..+..||++.|..|....-  +     ..+..+... ..-|+.|.   ..++..++.|+.+.+.--.+
T Consensus         4 ~q~F~~~~~el~~Wl~e~e~~l~~~~~--g-----~d~~~~~~~-~~~h~~~~---~ei~~~~~~i~~l~~~~~~L   68 (110)
T d1u5pa1           4 QQNFNTGIKDFDFWLSEVEALLASEDY--G-----KDLASVNNL-LKKHQLLE---ADISAHEDRLKDLNSQADSL   68 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCC--C-----SSHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCC--C-----CCHHHHHHH-HHHHHHHH---HHHHHhhHHHHHHHHHHHHH
Confidence            578999999999999999998874321  1     123333333 33344444   46677777777666654443

>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.68  Score=34.55  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019120           88 FLQQTVARFEKYLGEFRQWIEELEQLILLDP  118 (346)
Q Consensus        88 YF~qlV~~FE~rL~~YRqqIEELE~~L~s~s  118 (346)
                      -+..++.+|+..+..+..||.+.|..|....
T Consensus        11 ~l~~~~q~F~~~~~~l~~Wl~~~e~~l~~~~   41 (124)
T d1quua1          11 RLEHLAEKFRQKASTHETWAYGKEQILLQKD   41 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3455678999999999999999999987443

>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=4.6  Score=28.68  Aligned_cols=23  Identities=17%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Q 019120           95 RFEKYLGEFRQWIEELEQLILLD  117 (346)
Q Consensus        95 ~FE~rL~~YRqqIEELE~~L~s~  117 (346)
                      +|...+..+..||+++|..|...
T Consensus         3 ~F~~~~~~l~~Wl~~~e~~l~~~   25 (106)
T d1s35a1           3 AFLQDLDDFQAWLSITQKAVASE   25 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC
Confidence            68889999999999999998743

>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: EsxAB dimer-like
family: ESAT-6 like
domain: ESAT-6 like protein EsxB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.07  E-value=1.4  Score=32.18  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019120           89 LQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKT  163 (346)
Q Consensus        89 F~qlV~~FE~rL~~YRqqIEELE~~L~s~s~~~~S~~gs~tpQ~L~~~L~~~hq~FvaLAArva~LHe~Ve~lKe  163 (346)
                      +.+.+.+|++.-..++..+.+|+..|......=. +   .+-..-...+...+..+..|...|+.|.+.|....+
T Consensus        10 l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~-G---~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L~~aa~   80 (99)
T d1wa8a1          10 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWR-G---AAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGV   80 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888889999999888873322111 1   123344555555555555555555555555544443

>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: Spectrin alpha chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.68  E-value=4.3  Score=28.61  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 019120           95 RFEKYLGEFRQWIEELEQLILL  116 (346)
Q Consensus        95 ~FE~rL~~YRqqIEELE~~L~s  116 (346)
                      +|...+..+-.||.+.|..|..
T Consensus         2 ~F~~~~~el~~Wl~e~~~~l~s   23 (101)
T d1u5pa2           2 QFFRDMDDEESWIKEKKLLVSS   23 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhC
Confidence            6888889999999999999864