Citrus Sinensis ID: 019132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MQQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccHHHHEEEEEcHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccHccccccHHHHEEEEEHcHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHccc
Coil and Loop (DISEMBL)
MQQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDsqladgvdmsEVQDEFSAVITKALVTLVLGLEtkfdnemagmtrvpwgslesvgdqseyvngINMILTssipvlgsllspiYFQFFLDKLAsslgprfyanifkckhisETGAQQMLLDTQAVKTILldipslgrqtsnaaSYTKFVSREMSKAEALLKVILSPVDSVADTYRallpegtpmEFQRILELKGLKKADQQTILDdfnkhgpgttqptiapsvvpaappappssvipnsasagfitSREDVLTRAAALGRGAATTGFKRFLALTEAAkdrkdgpfrklfnt
Flexible Loop (DISEMBL)
MQQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLdipslgrqtsnAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTeaakdrkdgpfrklfnt
Low Complexity Region (SEG)
MQQSFLQDYqevvqgllqqllISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIapsvvpaappappssvipnsasaGFITSREDVltraaalgrgaattgFKRFLALTEAAKDRKDGPFRKLFNT
Disordered region (IsUnstruct)
*****LQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLK************************************************IT*REDVLTRAAALGRGAATTGFKRFLALT*****************
Disordered Region (DISOPRED)
*QQSFLQDYQEVV************DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDI************YTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF*****************************************************************************FRKLFN*
Disordered Region (DISEMBL)
MQQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNT
Disordered Region (DISPRO)
*QQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP***************************************************TTGFKRFLALTEAAKDRKDGPFRKLFNT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQSFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q8CCB4	832	Vacuolar protein sorting-	yes	no	0.744	0.308	0.359	1e-44
Q5ZLD7	831	Vacuolar protein sorting-	yes	no	0.692	0.287	0.365	3e-43
P34561	798	Vacuolar protein sorting-	yes	no	0.689	0.298	0.318	8e-34
Q5VIR6	699	Vacuolar protein sorting-	no	no	0.417	0.206	0.342	9e-21
Q5R5J4	699	Vacuolar protein sorting-	yes	no	0.417	0.206	0.342	9e-21
P87129	756	Vacuolar protein sorting-	yes	no	0.686	0.313	0.297	6e-20

>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 158/264 (59%), Gaps = 7/264 (2%)

Query: 29  VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
           +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query: 89  TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
              D  +  M+++PW ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct: 611 AACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
           A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYTK V 
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730

Query: 205 REMSKAEALLKVILSPVDSV---ADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
           + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+++Q ++L+  
Sbjct: 731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSEQSSMLELL 790

Query: 262 NKHGPGTTQPTIAPSVVPAAPPAP 285
            +  P     T   S +    P P
Sbjct: 791 RQRLPAPPSGTEGSSTLSLIAPTP 814

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.
Mus musculus (taxid: 10090)

>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 154/246 (62%), Gaps = 7/246 (2%)

Query: 29  VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
           +IC I+++AEYC  T+  L E + + +D+ L + ++++   D FS VI+ ++  LV  L+
Sbjct: 550 LICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLD 609

Query: 89  TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
              D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct: 610 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 669

Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
           A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q      ASYT+ V 
Sbjct: 670 ANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVV 729

Query: 205 REMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
           + M++AE +LKV+++P +      D Y  LL + +   FQ+IL++KGLK+++Q ++L+ F
Sbjct: 730 KGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELF 789

Query: 262 NKHGPG 267
            +  P 
Sbjct: 790 RQRLPA 795

May be involved in retrograde transport of early and late endosomes to the late Golgi.

Gallus gallus (taxid: 9031)

>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 146/251 (58%), Gaps = 13/251 (5%)

Query: 29  VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
           ++C I+ +A++C +TS  L E +S+ I      GVD+S+  + F ++  ++L  LV  +E
Sbjct: 491 LVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVE 545

Query: 89  TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSP--IYFQFFLDKL 146
           +  D  +  +++V W +++ VGD+S ++  +   L  ++P++  +LS    YF  F  KL
Sbjct: 546 STCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKL 605

Query: 147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 204
           A+ L  +F  ++F+C+ IS  GA+Q+LL+T ++KT LL +PS+    ++    +Y   V+
Sbjct: 606 ATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVN 665

Query: 205 REMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             ++KAE +LKV+   L  VD   + Y  LLP     E Q++LE+KG+K+ +   +L+ +
Sbjct: 666 AALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 725

Query: 262 N-KHGPGTTQP 271
             K G   + P
Sbjct: 726 RLKIGASGSDP 736

May be involved in retrograde transport of early and late endosomes to the late Golgi.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens GN=VPS53 PE=1 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)

Query: 29  VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
           +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct: 551 LICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query: 89  TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
              D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKF 670

Query: 147 ASSLGPRFYANIFKCKHISETGAQQM 172
           A+S  P+F  ++FKCK IS  GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696

May be involved in retrograde transport of early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Homo sapiens (taxid: 9606)

>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii GN=VPS53 PE=2 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)

Query: 29  VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
           +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query: 89  TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
              D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query: 147 ASSLGPRFYANIFKCKHISETGAQQM 172
           A+S  P+F  ++FKCK IS  GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Pongo abelii (taxid: 9601)

>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps53 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 12/249 (4%)

Query: 30  ICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLET 89
           I   +N+AEY ++T+ +L +   +I + +  D +  SEV +    VI+ +  TL+     
Sbjct: 460 IAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLE----VISSSRGTLLKFATG 515

Query: 90  KFDN----EMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS-PIYFQFFLD 144
           KF+N    ++  ++++   ++E+VGDQS YV G    +T+      S++   ++ + F D
Sbjct: 516 KFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCD 575

Query: 145 KLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVS 204
           +   S   +F   I+  K ISE GA+Q+LLD  + K  LL +P L +  S   SY   ++
Sbjct: 576 RSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLT 635

Query: 205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             M   E +LK +L+P    A    +Y  L+ + +   F  +LELKG+ K+D  + L  F
Sbjct: 636 IFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQF 695

Query: 262 NKHGPGTTQ 270
           +     T Q
Sbjct: 696 SDFVKKTPQ 704

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
225443241	826	PREDICTED: vacuolar protein sorting-asso	0.956	0.399	0.844	1e-155
449463607	823	PREDICTED: vacuolar protein sorting-asso	0.956	0.400	0.851	1e-154
255583561	816	Vacuolar protein sorting protein, putati	0.942	0.398	0.848	1e-153
356532934	837	PREDICTED: vacuolar protein sorting-asso	0.950	0.391	0.851	1e-151
356532932	820	PREDICTED: vacuolar protein sorting-asso	0.950	0.4	0.851	1e-151
356555817	837	PREDICTED: vacuolar protein sorting-asso	0.950	0.391	0.848	1e-149
356555815	820	PREDICTED: vacuolar protein sorting-asso	0.950	0.4	0.848	1e-149
357448261	851	Vacuolar protein sorting-associated prot	0.947	0.384	0.818	1e-147
334183201	847	heat intolerant 1 protein [Arabidopsis t	0.956	0.389	0.801	1e-146
9454561	854	Hypothetical protein [Arabidopsis thalia	0.956	0.386	0.801	1e-146

>gi|225443241|ref|XP_002271570.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Vitis vinifera] gi|298204761|emb|CBI25259.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/334 (84%), Positives = 301/334 (90%), Gaps = 4/334 (1%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S+RDERVICYIVN+AEYCHKTSG+LAE+VSKIIDSQL+D VDMSEVQDEFSA
Sbjct: 492 GMDGQIKTSDRDERVICYIVNTAEYCHKTSGELAENVSKIIDSQLSDAVDMSEVQDEFSA 551

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITKAL+TLV GLETKFD EMA MTRVPWG+LESVGDQSEYVN IN+ILTSSIP LGSLL
Sbjct: 552 VITKALITLVHGLETKFDAEMAAMTRVPWGTLESVGDQSEYVNAINLILTSSIPALGSLL 611

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SPIYFQFFLDKLASSLGPRFY NIFKCK ISETGAQQMLLDTQAVKTILL+IPSLGRQTS
Sbjct: 612 SPIYFQFFLDKLASSLGPRFYLNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGRQTS 671

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMSKAEALLKVILSPVDSVA+TYRALLPEGTP+EFQRILELKGLKKADQ
Sbjct: 672 GAASYSKFVSREMSKAEALLKVILSPVDSVANTYRALLPEGTPLEFQRILELKGLKKADQ 731

Query: 255 QTILDDFNKHGPGTTQPTIAPSVV----PAAPPAPPSSVIPNSASAGFITSREDVLTRAA 310
           Q+ILDDFNK G G TQP+I  + V    P AP AP +  + N AS G I SREDVLTRAA
Sbjct: 732 QSILDDFNKRGSGITQPSITATPVVQATPTAPVAPAALTVANPASVGVIASREDVLTRAA 791

Query: 311 ALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           ALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 792 ALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463607|ref|XP_004149523.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus] gi|449505810|ref|XP_004162574.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Cucumis sativus]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/331 (85%), Positives = 300/331 (90%), Gaps = 1/331 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S++DE+VICYIVNSAEYCHKTSG+LAESV KIIDSQL DGVDMSEVQDEFSA
Sbjct: 492 GMDGQIKTSDKDEKVICYIVNSAEYCHKTSGELAESVQKIIDSQLVDGVDMSEVQDEFSA 551

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITKALVTLV GLETKFD+EMA MTRVPWG+LESVGDQSEYVNGINMILT+SIPVLG LL
Sbjct: 552 VITKALVTLVHGLETKFDSEMAAMTRVPWGTLESVGDQSEYVNGINMILTTSIPVLGRLL 611

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP+YFQFFLDKLASSLGPRFYANIFKCK ISETGAQQMLLDTQAVKTILLDIPSLGRQTS
Sbjct: 612 SPLYFQFFLDKLASSLGPRFYANIFKCKQISETGAQQMLLDTQAVKTILLDIPSLGRQTS 671

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKG KKADQ
Sbjct: 672 GAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGFKKADQ 731

Query: 255 QTILDDFNKHGPGTTQ-PTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALG 313
           Q+ILDDFNKHGPG TQ    +PS  P     PP+  I + ++ G + SREDVLTRAAALG
Sbjct: 732 QSILDDFNKHGPGITQPSVSSPSAPPVVSSTPPAPTITSPSTVGLMASREDVLTRAAALG 791

Query: 314 RGAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           RGAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 792 RGAATTGFKRFLALTEAAKDRKDGPFRKLFN 822

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583561|ref|XP_002532537.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223527749|gb|EEF29853.1| Vacuolar protein sorting protein, putative [Ricinus communis]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/330 (84%), Positives = 299/330 (90%), Gaps = 5/330 (1%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+ +S+RDERVICYIVNSAEYC KTSG+LAESVSKIID  LA GVDMS V++EFS 
Sbjct: 491 GMDVQIKMSDRDERVICYIVNSAEYCRKTSGELAESVSKIIDPHLAAGVDMSAVEEEFSG 550

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           +IT+AL+TLV GLETKFD EMA MTRVPWG+LESVGDQSEYVN INMILTSS PVLGSLL
Sbjct: 551 LITEALMTLVHGLETKFDAEMAAMTRVPWGTLESVGDQSEYVNSINMILTSSTPVLGSLL 610

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP++FQ+FLDKLASSLGPRFY NIFKCK ISETGAQQMLLDTQAVKTILL+IPSLGRQTS
Sbjct: 611 SPVHFQYFLDKLASSLGPRFYTNIFKCKQISETGAQQMLLDTQAVKTILLEIPSLGRQTS 670

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
           +AASY+KFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ
Sbjct: 671 SAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 730

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGR 314
           Q+ILDDFNKHGP  TQP+IA SV P AP A     I N AS GFI SREDVLTRAAALGR
Sbjct: 731 QSILDDFNKHGPAITQPSIASSVGPTAPAA----AITN-ASLGFIASREDVLTRAAALGR 785

Query: 315 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 786 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 815

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532934|ref|XP_003535024.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/330 (85%), Positives = 300/330 (90%), Gaps = 2/330 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S+RDERVICYIVNSAEYCHKT+G+LAESVSKIID Q +DGVDMSEVQDEFSA
Sbjct: 509 GMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDPQYSDGVDMSEVQDEFSA 568

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITK+LVTLV GLETKFD EMA MTRVPWG+LESVGDQSEYVN IN+ILT SIP LGSLL
Sbjct: 569 VITKSLVTLVHGLETKFDMEMAAMTRVPWGTLESVGDQSEYVNAINLILTISIPALGSLL 628

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP+YFQFFLDKLASSLGPRFY+NIFKCK ISETGAQQMLLDTQAVKTILL++PSLGRQTS
Sbjct: 629 SPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTS 688

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ
Sbjct: 689 GAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 748

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGR 314
           Q+ILDDFNKHGPG  Q  IAPS+VPAA P  P     + ++ G I SREDVLTRAAALGR
Sbjct: 749 QSILDDFNKHGPGIKQTQIAPSIVPAAAPVAPVVP--SPSAIGLIASREDVLTRAAALGR 806

Query: 315 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 807 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 836

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532932|ref|XP_003535023.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/330 (85%), Positives = 300/330 (90%), Gaps = 2/330 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S+RDERVICYIVNSAEYCHKT+G+LAESVSKIID Q +DGVDMSEVQDEFSA
Sbjct: 492 GMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDPQYSDGVDMSEVQDEFSA 551

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITK+LVTLV GLETKFD EMA MTRVPWG+LESVGDQSEYVN IN+ILT SIP LGSLL
Sbjct: 552 VITKSLVTLVHGLETKFDMEMAAMTRVPWGTLESVGDQSEYVNAINLILTISIPALGSLL 611

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP+YFQFFLDKLASSLGPRFY+NIFKCK ISETGAQQMLLDTQAVKTILL++PSLGRQTS
Sbjct: 612 SPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTS 671

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ
Sbjct: 672 GAASYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 731

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGR 314
           Q+ILDDFNKHGPG  Q  IAPS+VPAA P  P     + ++ G I SREDVLTRAAALGR
Sbjct: 732 QSILDDFNKHGPGIKQTQIAPSIVPAAAPVAPVVP--SPSAIGLIASREDVLTRAAALGR 789

Query: 315 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 790 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 819

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555817|ref|XP_003546226.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 2 [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/330 (84%), Positives = 298/330 (90%), Gaps = 2/330 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S+RDERVICYIVNSAEYCHKT+G+LAESVSKIID Q +D VDMSEVQDEFSA
Sbjct: 509 GMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDPQYSDRVDMSEVQDEFSA 568

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITK+LVTLV GLETKFD EMA MTRVPWGSLESVGDQSEYVN IN+ILT+SIP LGSLL
Sbjct: 569 VITKSLVTLVHGLETKFDMEMAAMTRVPWGSLESVGDQSEYVNAINLILTTSIPALGSLL 628

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP+YFQFFLDKLASSLGPRFY+NIFKCK ISETGAQQMLLDTQAVKTILL++PSLGRQTS
Sbjct: 629 SPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTS 688

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ
Sbjct: 689 GAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 748

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGR 314
           Q+ILDDFNKHGP   Q  IAPS+VPAAPP  P     + ++ G I SREDVLTRAAALGR
Sbjct: 749 QSILDDFNKHGPEIKQTQIAPSIVPAAPPVAPVVP--SPSAIGLIASREDVLTRAAALGR 806

Query: 315 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GAATTGFKRFLALTEAAKDRK GPFR LFN
Sbjct: 807 GAATTGFKRFLALTEAAKDRKAGPFRNLFN 836

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555815|ref|XP_003546225.1| PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/330 (84%), Positives = 298/330 (90%), Gaps = 2/330 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+  S+RDERVICYIVNSAEYCHKT+G+LAESVSKIID Q +D VDMSEVQDEFSA
Sbjct: 492 GMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDPQYSDRVDMSEVQDEFSA 551

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITK+LVTLV GLETKFD EMA MTRVPWGSLESVGDQSEYVN IN+ILT+SIP LGSLL
Sbjct: 552 VITKSLVTLVHGLETKFDMEMAAMTRVPWGSLESVGDQSEYVNAINLILTTSIPALGSLL 611

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           SP+YFQFFLDKLASSLGPRFY+NIFKCK ISETGAQQMLLDTQAVKTILL++PSLGRQTS
Sbjct: 612 SPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKTILLEVPSLGRQTS 671

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ
Sbjct: 672 GAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 731

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGR 314
           Q+ILDDFNKHGP   Q  IAPS+VPAAPP  P     + ++ G I SREDVLTRAAALGR
Sbjct: 732 QSILDDFNKHGPEIKQTQIAPSIVPAAPPVAPVVP--SPSAIGLIASREDVLTRAAALGR 789

Query: 315 GAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GAATTGFKRFLALTEAAKDRK GPFR LFN
Sbjct: 790 GAATTGFKRFLALTEAAKDRKAGPFRNLFN 819

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448261|ref|XP_003594406.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355483454|gb|AES64657.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/336 (81%), Positives = 297/336 (88%), Gaps = 9/336 (2%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQ----- 69
           G+  Q+  S+RDERVICYIVNSAEYCHKT+G+LAESVSKIID Q ADGVDMSEVQ     
Sbjct: 518 GMDGQIKTSDRDERVICYIVNSAEYCHKTAGELAESVSKIIDHQFADGVDMSEVQRYAIM 577

Query: 70  -DEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIP 128
            DEFSAVIT++LVTLV GLETKFD EMA MTRVPWG+LESVGDQSEYVN IN+ILT+SIP
Sbjct: 578 QDEFSAVITRSLVTLVHGLETKFDIEMAAMTRVPWGTLESVGDQSEYVNAINLILTTSIP 637

Query: 129 VLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPS 188
            LGSLLSP+YFQFFLDKLASSLGPRFY+NIFKCK ISETGAQQMLLDTQAVK++LL+IPS
Sbjct: 638 TLGSLLSPVYFQFFLDKLASSLGPRFYSNIFKCKQISETGAQQMLLDTQAVKSMLLEIPS 697

Query: 189 LGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKG 248
           LGRQTS+A SY+KFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKG
Sbjct: 698 LGRQTSSATSYSKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKG 757

Query: 249 LKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTR 308
           LKKADQQ+ILDDFNKHGPG  Q  I P++ PA P AP         + G + SREDVLTR
Sbjct: 758 LKKADQQSILDDFNKHGPGIKQTQITPAIAPAPPVAPVVPS---PTAVGLVASREDVLTR 814

Query: 309 AAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           AAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN
Sbjct: 815 AAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 850

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183201|ref|NP_001185188.1| heat intolerant 1 protein [Arabidopsis thaliana] gi|332194437|gb|AEE32558.1| heat intolerant 1 protein [Arabidopsis thaliana]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/332 (80%), Positives = 296/332 (89%), Gaps = 2/332 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+ +SERDERVICYIVNSAEYCHKTSG+LAE+VS+IID   ADGVDMSEVQDEFSA
Sbjct: 515 GMDGQIKVSERDERVICYIVNSAEYCHKTSGELAENVSEIIDPHYADGVDMSEVQDEFSA 574

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITKALVTLVLGLETKFD EMA MTRVPW +LESVGDQS YVNGIN +L+ SIPVLG LL
Sbjct: 575 VITKALVTLVLGLETKFDTEMAVMTRVPWSTLESVGDQSGYVNGINTVLSGSIPVLGKLL 634

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           +P+YFQFFLDKLASSLGPRFYANIF+CK +SETGAQQMLLDTQAVK+ILL+IPSL RQTS
Sbjct: 635 TPVYFQFFLDKLASSLGPRFYANIFRCKQLSETGAQQMLLDTQAVKSILLEIPSLARQTS 694

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMS+AEALLKVILSP+DSVADTYRAL PEGTPMEFQRILELKGLKKADQ
Sbjct: 695 TAASYSKFVSREMSRAEALLKVILSPIDSVADTYRALFPEGTPMEFQRILELKGLKKADQ 754

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSV-IPNSAS-AGFITSREDVLTRAAAL 312
           Q+ILDDFNKHGPG TQ ++A ++    P  P   + I N A+ AGFI + EDVLTRAAAL
Sbjct: 755 QSILDDFNKHGPGFTQQSVAAAMPQPMPTPPAPPLAITNPATAAGFIANSEDVLTRAAAL 814

Query: 313 GRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GRGAA+TGFK+F+ALTEAAKDRKDGP R+LFN
Sbjct: 815 GRGAASTGFKKFIALTEAAKDRKDGPLRRLFN 846

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9454561|gb|AAF87884.1|AC012561_17 Hypothetical protein [Arabidopsis thaliana]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/332 (80%), Positives = 296/332 (89%), Gaps = 2/332 (0%)

Query: 15  GLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSA 74
           G+  Q+ +SERDERVICYIVNSAEYCHKTSG+LAE+VS+IID   ADGVDMSEVQDEFSA
Sbjct: 522 GMDGQIKVSERDERVICYIVNSAEYCHKTSGELAENVSEIIDPHYADGVDMSEVQDEFSA 581

Query: 75  VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL 134
           VITKALVTLVLGLETKFD EMA MTRVPW +LESVGDQS YVNGIN +L+ SIPVLG LL
Sbjct: 582 VITKALVTLVLGLETKFDTEMAVMTRVPWSTLESVGDQSGYVNGINTVLSGSIPVLGKLL 641

Query: 135 SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTS 194
           +P+YFQFFLDKLASSLGPRFYANIF+CK +SETGAQQMLLDTQAVK+ILL+IPSL RQTS
Sbjct: 642 TPVYFQFFLDKLASSLGPRFYANIFRCKQLSETGAQQMLLDTQAVKSILLEIPSLARQTS 701

Query: 195 NAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ 254
            AASY+KFVSREMS+AEALLKVILSP+DSVADTYRAL PEGTPMEFQRILELKGLKKADQ
Sbjct: 702 TAASYSKFVSREMSRAEALLKVILSPIDSVADTYRALFPEGTPMEFQRILELKGLKKADQ 761

Query: 255 QTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSV-IPNSAS-AGFITSREDVLTRAAAL 312
           Q+ILDDFNKHGPG TQ ++A ++    P  P   + I N A+ AGFI + EDVLTRAAAL
Sbjct: 762 QSILDDFNKHGPGFTQQSVAAAMPQPMPTPPAPPLAITNPATAAGFIANSEDVLTRAAAL 821

Query: 313 GRGAATTGFKRFLALTEAAKDRKDGPFRKLFN 344
           GRGAA+TGFK+F+ALTEAAKDRKDGP R+LFN
Sbjct: 822 GRGAASTGFKKFIALTEAAKDRKDGPLRRLFN 853

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
DICTYBASE|DDB_G0285901	838	DDB_G0285901 "Vps53-like domai	0.678	0.279	0.411	2.2e-47
ZFIN|ZDB-GENE-041114-199	832	vps53 "vacuolar protein sortin	0.701	0.290	0.398	8.7e-44
MGI|MGI:1915549	832	Vps53 "vacuolar protein sortin	0.707	0.293	0.366	2.8e-42
UNIPROTKB|Q5ZLD7	831	VPS53 "Vacuolar protein sortin	0.689	0.286	0.367	3.4e-41
UNIPROTKB|E2R1D2	832	VPS53 "Uncharacterized protein	0.701	0.290	0.366	4.5e-41
UNIPROTKB|F1RHI3	832	VPS53 "Uncharacterized protein	0.701	0.290	0.374	1.2e-40
UNIPROTKB|E1BJW7	832	VPS53 "Uncharacterized protein	0.689	0.286	0.371	1.6e-40
WB|WBGene00011502	798	vps-53 [Caenorhabditis elegans	0.689	0.298	0.318	4.9e-32
UNIPROTKB|P34561	798	vps-53 "Vacuolar protein sorti	0.689	0.298	0.318	4.9e-32
TAIR|locus:2036396	569	AT1G50970 "AT1G50970" [Arabido	0.495	0.300	0.446	2.9e-29

DICTYBASE|DDB_G0285901 DDB_G0285901 "Vps53-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 502 (181.8 bits), Expect = 2.2e-47, P = 2.2e-47
 Identities = 97/236 (41%), Positives = 155/236 (65%)

Query:    25 RDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLV 84
             ++++ IC I+N+AE+C KTSG + +   KIID +  + +D+ ++Q++FS++I K +  LV
Sbjct:   582 QEDKTICLIINTAEFCRKTSGQMTDGFKKIIDEKYKESIDLKDIQNDFSSIIAKGVKALV 641

Query:    85 LGLETKFDNEMAGMTRVPWGS-LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFL 143
              G+E K D  +  MTR+ WG   + VGD S YVN +  I++ S  +  + LSP +F++F 
Sbjct:   642 SGIEAKLDPHLQSMTRMEWGERYQYVGDNSPYVNEVVQIISDSSQLEVAWLSPEHFRYFC 701

Query:   144 DKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFV 203
             D  ASS G R   +I+KC+ ISE G+Q +LLD   +KT+LLD+P+  +   + + YTK +
Sbjct:   702 DLFASSFGLRIPQSIYKCRGISEIGSQGILLDITTIKTVLLDLPNKVKDGRSNSRYTKLL 761

Query:   204 SREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQ-QTIL 258
             ++E +KAE LLKVI    D + +T++ L P+ T  +FQ+I++LKG K  D+ QT L
Sbjct:   762 NKEFAKAENLLKVIGCSQDHLVETFKDLFPDSTNADFQKIMDLKGFKVGDKIQTEL 817

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-041114-199 vps53 "vacuolar protein sorting 53 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 8.7e-44, P = 8.7e-44
 Identities = 100/251 (39%), Positives = 159/251 (63%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D  L + +++S   D FS VI+ ++  LV  L+
Sbjct:   550 LICSILSTAEYCLATTLQLEEKLKEKVDKSLMERINLSGEMDTFSTVISNSIQLLVQDLD 609

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++PW S+E VGDQS YV  + M +  ++P++   L+    YF  F  K 
Sbjct:   610 AACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRKYFTQFCIKF 669

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
              +S  P+F  ++F+CK IS  GA+Q+LLDT ++KT+LLD+PS+G Q    A  SYTK V 
Sbjct:   670 TNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKAPASYTKIVV 729

Query:   205 REMSKAEALLKVILSPVD-SVA--DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P + SV   D Y  LL +  P  FQ+IL++KGLK+++Q T+L+ F
Sbjct:   730 KGMTRAEMILKVVMAPHEPSVVFVDNYIKLLADSNPETFQKILDMKGLKRSEQSTMLELF 789

Query:   262 NKHGPGTTQPT 272
              +  P  T P+
Sbjct:   790 RQRLP--TPPS 798

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915549 Vps53 "vacuolar protein sorting 53 (yeast)" [Mus musculus (taxid:10090)]

 Score = 441 (160.3 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 92/251 (36%), Positives = 154/251 (61%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct:   551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++PW ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct:   611 AACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
             A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q    A  SYTK V 
Sbjct:   671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730

Query:   205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+++Q ++L+  
Sbjct:   731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSEQSSMLELL 790

Query:   262 NKHGPGTTQPT 272
              +  P     T
Sbjct:   791 RQRLPAPPSGT 801

GO:0000938 "GARP complex" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q5ZLD7 VPS53 "Vacuolar protein sorting-associated protein 53 homolog" [Gallus gallus (taxid:9031)]

 Score = 433 (157.5 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
 Identities = 90/245 (36%), Positives = 154/245 (62%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D+ L + ++++   D FS VI+ ++  LV  L+
Sbjct:   550 LICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLD 609

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct:   610 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 669

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
             A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q    A  SYT+ V 
Sbjct:   670 ANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVV 729

Query:   205 REMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P +      D Y  LL + +   FQ+IL++KGLK+++Q ++L+ F
Sbjct:   730 KGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELF 789

Query:   262 NKHGP 266
              +  P
Sbjct:   790 RQRLP 794

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

UNIPROTKB|E2R1D2 VPS53 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 432 (157.1 bits), Expect = 4.5e-41, Sum P(2) = 4.5e-41
 Identities = 92/251 (36%), Positives = 155/251 (61%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct:   551 LICGILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct:   611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
             A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q    A  SYTK V 
Sbjct:   671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730

Query:   205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+++Q ++L+  
Sbjct:   731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKRSEQSSMLELL 790

Query:   262 NKHGPGTTQPT 272
              +  P  T P+
Sbjct:   791 RQRLP--TPPS 799

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|F1RHI3 VPS53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 440 (159.9 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 94/251 (37%), Positives = 155/251 (61%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D  L + +++S   D FS VI+ ++  LV  L+
Sbjct:   551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLSGEMDTFSTVISSSIQLLVQDLD 610

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct:   611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
             A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q    A  SYTK V 
Sbjct:   671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730

Query:   205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+++Q + L+ F
Sbjct:   731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKRSEQSSTLELF 790

Query:   262 NKHGPGTTQPT 272
              +  P  T P+
Sbjct:   791 RQRLP--TPPS 799

GO:0000938 "GARP complex" evidence=IEA

UNIPROTKB|E1BJW7 VPS53 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 439 (159.6 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 91/245 (37%), Positives = 153/245 (62%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             +IC I+++AEYC  T+  L E + + +D  L + ++++   D FS VI+ ++  LV  L+
Sbjct:   551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLD 610

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
                D  +  M+++ W ++E VGDQS YV  + + +  ++P++   L+    YF  F  K 
Sbjct:   611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--SYTKFVS 204
             A+S  P+F  ++FKCK IS  GA+Q+LLDT ++K +LLD+PS+G Q    A  SYTK V 
Sbjct:   671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730

Query:   205 REMSKAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
             + M++AE +LKV+++P + +    D Y  LL +     FQ+IL++KGLK+++Q ++L+ F
Sbjct:   731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKRSEQSSMLELF 790

Query:   262 NKHGP 266
              +  P
Sbjct:   791 RQRLP 795

GO:0000938 "GARP complex" evidence=IEA

WB|WBGene00011502 vps-53 [Caenorhabditis elegans (taxid:6239)]

 Score = 360 (131.8 bits), Expect = 4.9e-32, P = 4.9e-32
 Identities = 80/251 (31%), Positives = 145/251 (57%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             ++C I+ +A++C +TS  L E +S+ I      GVD+S+  + F ++  ++L  LV  +E
Sbjct:   491 LVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVE 545

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
             +  D  +  +++V W +++ VGD+S ++  +   L  ++P++  +LS    YF  F  KL
Sbjct:   546 STCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKL 605

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR--QTSNAASYTKFVS 204
             A+ L  +F  ++F+C+ IS  GA+Q+LL+T ++KT LL +PS+     +    +Y   V+
Sbjct:   606 ATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVN 665

Query:   205 REMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
               ++KAE +LKV+   L  VD   + Y  LLP     E Q++LE+KG+K+ +   +L+ +
Sbjct:   666 AALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 725

Query:   262 N-KHGPGTTQP 271
               K G   + P
Sbjct:   726 RLKIGASGSDP 736

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0000938 "GARP complex" evidence=IPI

UNIPROTKB|P34561 vps-53 "Vacuolar protein sorting-associated protein 53 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 360 (131.8 bits), Expect = 4.9e-32, P = 4.9e-32
 Identities = 80/251 (31%), Positives = 145/251 (57%)

Query:    29 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 88
             ++C I+ +A++C +TS  L E +S+ I      GVD+S+  + F ++  ++L  LV  +E
Sbjct:   491 LVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSLQVLVQDVE 545

Query:    89 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 146
             +  D  +  +++V W +++ VGD+S ++  +   L  ++P++  +LS    YF  F  KL
Sbjct:   546 STCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKL 605

Query:   147 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR--QTSNAASYTKFVS 204
             A+ L  +F  ++F+C+ IS  GA+Q+LL+T ++KT LL +PS+     +    +Y   V+
Sbjct:   606 ATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVN 665

Query:   205 REMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 261
               ++KAE +LKV+   L  VD   + Y  LLP     E Q++LE+KG+K+ +   +L+ +
Sbjct:   666 AALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 725

Query:   262 N-KHGPGTTQP 271
               K G   + P
Sbjct:   726 RLKIGASGSDP 736

GO:0005515 "protein binding" evidence=IPI

GO:0000938 "GARP complex" evidence=IDA

GO:0060378 "regulation of brood size" evidence=IMP

TAIR|locus:2036396 AT1G50970 "AT1G50970" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 84/188 (44%), Positives = 100/188 (53%)

Query:   165 SETGAQQMLLDTQAVKTILLDIPSLGRQTSNAA--------SYTKFVSREMSKAEALLKV 216
             SE     MLLD   +K ILL +PSL RQ   +A        SY K V+ +M +AEA+LKV
Sbjct:   390 SENSVYLMLLDAHDMKMILLKVPSLARQPEASALLVKTATASYVKLVNHQMKRAEAVLKV 449

Query:   217 ILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIXXX 276
             I SP+ +V DTYRAL PE TPMEFQRIL LKGL KA+QQ+ILDDFN H    TQ ++   
Sbjct:   450 IASPIVTVIDTYRALFPEETPMEFQRILVLKGLTKAEQQSILDDFNNHSSRITQLSVAAK 509

Query:   277 XXXXXXXXXXXXXXXXXXXXGFITSREDVXXXXXXXXXXXXXXXFKRFLALTEAAKDRKD 336
                                  F  + E+V               F +  ALT AAKDR  
Sbjct:   510 TPEAHALPLALTNVAPAVR--FKANSEEVLTRAASAATTS----FMKLYALTGAAKDR-- 561

Query:   337 GPFRKLFN 344
              PFRKLFN
Sbjct:   562 -PFRKLFN 568

GO:0005215 "transporter activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025233001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (826 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035213001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (985 aa)					•		•		0.586
	GSVIVG00030154001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (709 aa)					•		•		0.522

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
pfam04437	483	pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family	0.001

>gnl|CDD|218088 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 24/199 (12%)

Query: 4   SFLQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV 63
           S  ++Y      L + L      ER  C  +N+A Y      D ++ V  + ++ L D  
Sbjct: 222 SRYEEYLLSTSTLDESLTDDAELERT-CRKLNAANYLESKLKDWSDDVFFLQEASLGDIA 280

Query: 64  DMSEVQDE--FSAVI-----------TKALVTLVLGLETKFDNEMAGMTRVPWGSLESVG 110
           + +       F   I              +  LV G +    N     T   W SL S  
Sbjct: 281 NRTSSSYGALFDETINSLERLRLDSEGSIVHRLVKGFKAALRNYFKIST---WSSLSSTS 337

Query: 111 DQ------SEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHI 164
                   +E V  +   L   I  L  LL    F     +L  SL     ++I      
Sbjct: 338 ALESLSPSAELVEALR-YLRRRISKLERLLPLAIFLRIWRQLLLSLDTYIISSILMLNKF 396

Query: 165 SETGAQQMLLDTQAVKTIL 183
           SE GA Q   D + +  + 
Sbjct: 397 SEGGAAQFHFDMRNLFEVF 415

This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control, as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport. Length = 483

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
KOG2180	793	consensus Late Golgi protein sorting complex, subu	100.0
PF06046	566	Sec6: Exocyst complex component Sec6; InterPro: IP	99.83
KOG2180	793	consensus Late Golgi protein sorting complex, subu	99.34
PF04437	494	RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00	99.15
KOG2286	667	consensus Exocyst complex subunit SEC6 [Intracellu	99.09
PF04091	311	Sec15: Exocyst complex subunit Sec15-like ; InterP	99.01
COG5173	742	SEC6 Exocyst complex subunit SEC6 [Intracellular t	98.68
PF10474	234	DUF2451: Protein of unknown function C-terminus (D	98.07
KOG0412	773	consensus Golgi transport complex COD1 protein [In	97.32
PF07393	710	Sec10: Exocyst complex component Sec10; InterPro:	96.38
KOG2176	800	consensus Exocyst complex, subunit SEC15 [Intracel	95.99
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	95.59
KOG3691	982	consensus Exocyst complex subunit Sec8 [Intracellu	94.65
KOG2218	737	consensus ER to golgi transport protein/RAD50-inte	91.43
PF14923	450	CCDC142: Coiled-coil protein 142	91.16
KOG2307	705	consensus Low density lipoprotein receptor [Intrac	85.82
PF12022	125	DUF3510: Domain of unknown function (DUF3510); Int	83.8

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-50  Score=415.06  Aligned_cols=264  Identities=34%  Similarity=0.563  Sum_probs=245.8

Q ss_pred             hhHHHHHHHHHhcc---------ccc-------------ccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhcc
Q 019132            3 QSFLQDYQEVVQGL---------LQQ-------------LLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLA   60 (345)
Q Consensus         3 ~~~l~~y~~~i~~~---------~~~-------------~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~k   60 (345)
                      +|||++|+.+|+..         ++.             -+.+.+++..+|++++||+||.+|+.|||++++|+++..|.
T Consensus       448 ~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~  527 (793)
T KOG2180|consen  448 SKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYI  527 (793)
T ss_pred             HHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            69999999999611         111             13455789999999999999999999999999999999999


Q ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhc--cHHH
Q 019132           61 DGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL--SPIY  138 (345)
Q Consensus        61 ekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L--~~~Y  138 (345)
                      .+|||+.+.+.|+.+++.|++.+|+++++.|+|.+..|.++.|.+++.|||||+|++++..++.+.+|.|++++  ++.|
T Consensus       528 ~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~  607 (793)
T KOG2180|consen  528 KGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKY  607 (793)
T ss_pred             hhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987  6799


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhc
Q 019132          139 FQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL  218 (345)
Q Consensus       139 ~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~  218 (345)
                      |.+||++++..|+++|++.+|||+|++.+||||||+|++++|++|+++|+......+-..|++||++.|+++|++|||||
T Consensus       608 f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm  687 (793)
T KOG2180|consen  608 FAQFCVRLAASFIPKFLNVLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLM  687 (793)
T ss_pred             HHHhhHHHHhhcchHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999877544344499999999999999999999


Q ss_pred             CC---chhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 019132          219 SP---VDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP  266 (345)
Q Consensus       219 sP---~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~  266 (345)
                      +|   +++|+++|..|+||.+.++|++||+|||++|.|+...+..|+-...
T Consensus       688 ~p~~~~~~f~e~yikL~~~~~~a~~~~vLelKgv~r~d~~~~l~~~~~~~~  738 (793)
T KOG2180|consen  688 TPLDPADDFYEQYIKLLPDPDSAEWQKVLELKGVKRDDALWKLLWFAYNLE  738 (793)
T ss_pred             CCCCchHHHHHHHHHhcCCCcHHHHHHHHHhcCCcHHHHHHHHHHHHHhcc
Confidence            98   4799999999999999999999999999999999999999986544

>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex

Probab=99.83  E-value=9.8e-20  Score=188.62  Aligned_cols=223  Identities=17%  Similarity=0.292  Sum_probs=192.7

Q ss_pred             ccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCC
Q 019132           24 ERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRV  101 (345)
Q Consensus        24 ~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~  101 (345)
                      .--+.++|.++|.+..|.+.+++++.++.+.+++.|.+++  +++...++|.++.+.|.+.|+..+..+++|.|+.++..
T Consensus       312 ~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~  391 (566)
T PF06046_consen  312 PGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTK  391 (566)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSG
T ss_pred             cchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcC
Confidence            4567899999999999999999999999999998888774  89999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHh----c--cCCChhhHhhHHhh
Q 019132          102 PWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFK----C--KHISETGAQQMLLD  175 (345)
Q Consensus       102 nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k----~--kpis~~gaeQLLLD  175 (345)
                      .|...       ..|.+|+.++.++++.++.+|++.||..|++.+...++..|+.++++    |  +.....+|+||..|
T Consensus       392 ~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D  464 (566)
T PF06046_consen  392 KWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRD  464 (566)
T ss_dssp             GGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHH
T ss_pred             cCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH
Confidence            99964       69999999999999999999999999999999999999999999976    3  23566799999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHh-cCCchhHHHHHHhh---CCCCCHHHHHHHHhhcC-CC
Q 019132          176 TQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI-LSPVDSVADTYRAL---LPEGTPMEFQRILELKG-LK  250 (345)
Q Consensus       176 ~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL-~sP~e~~ve~Y~~L---~~d~S~~~FqkIL~LKG-l~  250 (345)
                      .+.|+++|.++.+           ...+...+..++.++.++ ..+++++...|..|   .||.+...+..||.+|| ++
T Consensus       465 ~~~l~~~F~~~~~-----------~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~  533 (566)
T PF06046_consen  465 AEQLKSFFSKLGS-----------KSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLS  533 (566)
T ss_dssp             HHHHHHHHHHHTH-----------HHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--
T ss_pred             HHHHHHHHHHhcc-----------cccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCC
Confidence            9999999999883           789999999999999999 77777775555555   57888899999999997 99


Q ss_pred             HHHHHHHHHHHHhc
Q 019132          251 KADQQTILDDFNKH  264 (345)
Q Consensus       251 k~eq~~lle~f~~~  264 (345)
                      |++.+.+++..+..
T Consensus       534 r~~~~~il~~~~~~  547 (566)
T PF06046_consen  534 RSEVKEILEILREI  547 (566)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999854

Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.

>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=9.5e-13  Score=137.09  Aligned_cols=233  Identities=24%  Similarity=0.172  Sum_probs=187.4

Q ss_pred             HHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHH
Q 019132           38 EYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVN  117 (345)
Q Consensus        38 DYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~  117 (345)
                      .+|.....+|-+..    |+-+...+.|+.-.+.|...|-.+.                    .+|...+++|       
T Consensus       424 kkcltq~~~Ls~n~----dpl~~~~~~f~k~LreYa~kil~~~--------------------lP~~t~~s~g-------  472 (793)
T KOG2180|consen  424 KKCLTQCSELSENN----DPLIALLAVFSKWLREYAQKILLGN--------------------LPDTTSSSDG-------  472 (793)
T ss_pred             HHHHHHHHHhccCC----chHHHHHHHHHHHHHHHHHHHhhcc--------------------CCcccccccC-------
Confidence            49999999998776    6667777888888888887666553                    8899877776       


Q ss_pred             HHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCC----
Q 019132          118 GINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT----  193 (345)
Q Consensus       118 ~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~----  193 (345)
                                       ...|+..+.                 |.--..-++.++|+|+..++++....|....+.    
T Consensus       473 -----------------~~v~~l~~~-----------------e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl  518 (793)
T KOG2180|consen  473 -----------------AAVYLLLRI-----------------EGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKL  518 (793)
T ss_pred             -----------------chhhhHHHh-----------------hhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             122222221                 333444566689999999999998888764332    


Q ss_pred             --CCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCCC
Q 019132          194 --SNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQP  271 (345)
Q Consensus       194 --~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~~~~~~  271 (345)
                        ...++|.+.|+-.+.+.+...++..+|.....+.|..+.|+.++-.++++..++|+.  ||++++..+..|..+....
T Consensus       519 ~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vg--DQss~v~s~~~h~~q~~~~  596 (793)
T KOG2180|consen  519 KEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVG--DQSSYVSSLNFHLSQFVPL  596 (793)
T ss_pred             HHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCcc--ccchhhHHHHHHHHhhhHH
Confidence              446789999999999999999999999988889999999999999999999999998  9999999999997766444


Q ss_pred             CccCCCCCCCCCCCCCcccCCCCCcccccchHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhcC--CCccccccCC
Q 019132          272 TIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRK--DGPFRKLFNT  345 (345)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  345 (345)
                      .+...+..+.    +.+.-....+.++++++++++.|+..    .+.+|+..+++.||++|+|.  .||+|++||+
T Consensus       597 i~~~~~~~r~----~f~~fc~r~a~~f~~kf~~~l~R~k~----~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~  664 (793)
T KOG2180|consen  597 IRDALALDRK----YFAQFCVRLAASFIPKFLNVLFRAKP----ISVVGAEQLLLDTESLKDALLTLPPLRSLFND  664 (793)
T ss_pred             HHHHhccccc----hHHHhhHHHHhhcchHHHHHHHHhhh----HhhhHHHHHHHHHHHHHHHhhcCCchhhhccc
Confidence            4433333322    44455666789999999999999998    89999999999999999996  9999999995

>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases

Probab=99.15  E-value=1.6e-10  Score=118.81  Aligned_cols=221  Identities=21%  Similarity=0.312  Sum_probs=158.9

Q ss_pred             ccCCccchhhhhhhcccHHHHHHhHHHHHHHHH-----------------Hhhhhhc-cCCcccchhhhHHHHHHHHHHH
Q 019132           20 LLISERDERVICYIVNSAEYCHKTSGDLAESVS-----------------KIIDSQL-ADGVDMSEVQDEFSAVITKALV   81 (345)
Q Consensus        20 ~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~-----------------e~id~~~-kekIdf~~e~D~F~~visk~I~   81 (345)
                      ...+...+..+|.++|+|+||...+.+.+|.+-                 +..+..- .+.--|+++-..|..+..+...
T Consensus       237 ~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~  316 (494)
T PF04437_consen  237 SLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLE  316 (494)
T ss_dssp             CEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHH
T ss_pred             hccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            444567789999999999999999998887432                 2222110 1234699999999999999999


Q ss_pred             HHHHHHhhhchHHhhcccC-CCCCCCccC-----CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 019132           82 TLVLGLETKFDNEMAGMTR-VPWGSLESV-----GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFY  155 (345)
Q Consensus        82 ~LV~~le~~le~a~~~m~~-~nW~~~e~V-----gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~  155 (345)
                      .+++.+...++..++...+ ..|...+..     ...|+-.......|+..+..+...|++..|+.+...+++.+..-++
T Consensus       317 ~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~  396 (494)
T PF04437_consen  317 SIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLW  396 (494)
T ss_dssp             HHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 999877665     4778888899999999999999999999999999999999999999


Q ss_pred             HHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchh-------HHHHH
Q 019132          156 ANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDS-------VADTY  228 (345)
Q Consensus       156 ~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~-------~ve~Y  228 (345)
                      +.|+.....+.-||.||..|+..|...|..             |.....+.|.++.-.+++|.-|.+.       +-..|
T Consensus       397 ~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~-------------~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~  463 (494)
T PF04437_consen  397 ESILMSNKFSRAGAAQLQFDMRALFSVFSQ-------------YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSY  463 (494)
T ss_dssp             HTTTTTS-B-HHHHHHHHHHHHHHHTTS---------------TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHH
T ss_pred             HHhhhcCeeChhHHHHHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhh
Confidence            999999999999999999999998877744             4455567788888889999877532       12222


Q ss_pred             HhhCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q 019132          229 RALLPEGTPMEFQRILELKGLKKADQQTILD  259 (345)
Q Consensus       229 ~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle  259 (345)
                      ..      ..++.++|+--|+..=...+..+
T Consensus       464 ~~------~~~~~~~l~~lgI~~Ls~~ea~~  488 (494)
T PF04437_consen  464 IK------NENARKLLEELGISHLSPSEARD  488 (494)
T ss_dssp             HH------HT--SHHHHHTT-SSS-HHHHHH
T ss_pred             cc------chHHHHHHHHCCCCcCCHHHHHH
Confidence            22      34666666665665433333333

RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.

>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.2e-08  Score=107.93  Aligned_cols=213  Identities=14%  Similarity=0.200  Sum_probs=173.0

Q ss_pred             hhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCC
Q 019132           27 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSL  106 (345)
Q Consensus        27 ~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~  106 (345)
                      ..|...++|.+.-|..-+.++-.+.     +.      +..-.|+|..+.+.+...|+..+..||+|++..++...|...
T Consensus       440 ~~y~iA~~N~~~~~a~~~~~~~~~~-----d~------~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g  508 (667)
T KOG2286|consen  440 REYLIANINNNLKMAMLMVNLKSKY-----DT------LKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAG  508 (667)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHhcc-----ch------hHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhch
Confidence            4667778999999998888877666     11      445689999999999999999999999999999999999864


Q ss_pred             ccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhC
Q 019132          107 ESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDI  186 (345)
Q Consensus       107 e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~L  186 (345)
                             .-+..|+.++.++++++.++..+. |..|.+.+...++-.|+.+|.+=|-.-.-++|+|..|...+..+|.++
T Consensus       509 -------~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~  580 (667)
T KOG2286|consen  509 -------SVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKY  580 (667)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHh
Confidence                   368889999999999999999887 999999999999999999997654433368999999999999999877


Q ss_pred             CCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcC-CchhHH---HHHHhhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019132          187 PSLGRQTSNAASYTKFVSREMSKAEALLKVILS-PVDSVA---DTYRALLPEGTPMEFQRILELK-GLKKADQQTILDDF  261 (345)
Q Consensus       187 P~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~s-P~e~~v---e~Y~~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f  261 (345)
                      -+             -|+.-..-+..+-+++.. |+|.+.   .+|...-||.+.+...+||..| |+++++...+++..
T Consensus       581 ~~-------------~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~  647 (667)
T KOG2286|consen  581 GS-------------DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDIL  647 (667)
T ss_pred             Cc-------------chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            65             223334445566666655 777654   4555556899999999999999 89999999999988


Q ss_pred             HhcCCCCCCCC
Q 019132          262 NKHGPGTTQPT  272 (345)
Q Consensus       262 ~~~~~~~~~~~  272 (345)
                      +. +.+...|+
T Consensus       648 ~~-~~~~~~~~  657 (667)
T KOG2286|consen  648 KE-SMGSQEPD  657 (667)
T ss_pred             HH-HHhhhCcC
Confidence            73 34444443

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane

Probab=99.01  E-value=3.9e-09  Score=103.07  Aligned_cols=210  Identities=17%  Similarity=0.225  Sum_probs=139.0

Q ss_pred             HHHHHHHHHhc------ccccccCCccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhc--cCCcccchhhhHHHHHH
Q 019132            5 FLQDYQEVVQG------LLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQL--ADGVDMSEVQDEFSAVI   76 (345)
Q Consensus         5 ~l~~y~~~i~~------~~~~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~--kekIdf~~e~D~F~~vi   76 (345)
                      .|+.|.+.++.      ....+..+ -.+..++=|+...+|+......||+-+......+-  ...+.+. ..+.|.+..
T Consensus        65 ~v~ks~d~lL~~~l~~~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~~l~-a~~~f~~~r  142 (311)
T PF04091_consen   65 IVRKSLDRLLTRVLNGSLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHIRLK-ATKMFKDAR  142 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhHhhh-hHHHHHHHH
Confidence            45556655542      22233334 56777888888899999999999999988874322  1223343 459999999


Q ss_pred             HHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019132           77 TKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYA  156 (345)
Q Consensus        77 sk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~  156 (345)
                      +.|-+.|...+..+++--+ ++...||...+..++.|.||.++...|+..+..+...|++.+....|-...+.+..+|++
T Consensus       143 ~~Ae~~I~~lv~~KIDe~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~  221 (311)
T PF04091_consen  143 KAAEKRIFELVNSKIDEFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLD  221 (311)
T ss_dssp             THHHHHHHHHHHHHHHHHH-TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 999999999999999999999999999999988888999999999999999999999999


Q ss_pred             Hh--HhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhH
Q 019132          157 NI--FKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSV  224 (345)
Q Consensus       157 ~I--~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~  224 (345)
                      .|  -.+|.|++.|.+|+.+|+..+..+.-++|..+.+.       ..+...|..+..++-++++.. +.|
T Consensus       222 ~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~-------~~L~~~F~eLrQlvdLl~s~~~~~y  285 (311)
T PF04091_consen  222 LLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNI-------PSLRETFAELRQLVDLLLSDDWEEY  285 (311)
T ss_dssp             HHT---------TTHHHHHHHHHHHHHHHTT-SSSS--S-------STTGGGGHHHHHHHHHHH-------
T ss_pred             HhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCccccc-------ccHHHHHHHHHHHHHHHhcCCHHHH
Confidence            99  77799999999999999999999999998765442       344566788889999999874 544

The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.

>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]

Probab=98.68  E-value=3.3e-06  Score=87.06  Aligned_cols=210  Identities=12%  Similarity=0.118  Sum_probs=157.9

Q ss_pred             hhhhhhcc----cHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 019132           28 RVICYIVN----SAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW  103 (345)
Q Consensus        28 k~~C~IIN----TADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW  103 (345)
                      .|+..+-|    -|+|.-.+...-.+.+..-......+.  |...-|+|.+|..-+...|+..+..+|.|++.+++..+|
T Consensus       490 eyliav~Nd~lK~A~y~~~~~sntfeLitseye~d~~~~--lgkTvDgfi~I~~~s~~~l~~~i~~d~~pa~~~iF~~~W  567 (742)
T COG5173         490 EYLIAVGNDGLKIAQYITSLPSNTFELITSEYENDEVKE--LGKTVDGFIDILKASNTFLAEFIIYDCQPAIDKIFTDEW  567 (742)
T ss_pred             HHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHHHHHHH--hcccchhHHHHHhhhhHHHHHHHHHhhhhhHHHhcCccc
Confidence            44444544    477777777666666666555544433  777889999999999999999999999999999999999


Q ss_pred             CCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccC-CChh-hHhhHHhhHHHHHH
Q 019132          104 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKH-ISET-GAQQMLLDTQAVKT  181 (345)
Q Consensus       104 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kp-is~~-gaeQLLLD~~sLK~  181 (345)
                      +..       +-+..|+.++++++.++.+++++..|-+|.+.+..+++.+|+.+|.+=+. +.+- +.|||.-|..-+..
T Consensus       568 y~g-------S~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~~k~a~~~~~na~~~lksD~~~~y~  640 (742)
T COG5173         568 YGG-------SVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKRASIAEENASRTLKSDHTKLYE  640 (742)
T ss_pred             ccc-------chHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            953       46889999999999999999999999999999999999999999965533 3333 68999999999999


Q ss_pred             HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhc-CCchh---HHHHHHhhCCCCCHHHHHHHHhhc-CCCHHHHHH
Q 019132          182 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL-SPVDS---VADTYRALLPEGTPMEFQRILELK-GLKKADQQT  256 (345)
Q Consensus       182 ~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~-sP~e~---~ve~Y~~L~~d~S~~~FqkIL~LK-Gl~k~eq~~  256 (345)
                      .|..+-.           ..+|...+.-++.++=.+. .|.|.   .+..|....+|.-.+-...||.-+ ++.++=.++
T Consensus       641 ~f~~y~d-----------~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Ilk~R~Dl~~sIiqk  709 (742)
T COG5173         641 MFSGYGD-----------PEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTILKKRQDLTESIIQK  709 (742)
T ss_pred             HHHhhCC-----------HHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHHHhhhhhHHHHHHH
Confidence            9977765           4566666665433333323 34554   344455555676567778888776 787773333


Q ss_pred             H
Q 019132          257 I  257 (345)
Q Consensus       257 l  257 (345)
                      .
T Consensus       710 ~  710 (742)
T COG5173         710 K  710 (742)
T ss_pred             H
Confidence            3

>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known

Probab=98.07  E-value=0.00035  Score=65.97  Aligned_cols=173  Identities=16%  Similarity=0.210  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhh-----hccHHHHHHHHHHHHHH
Q 019132           75 VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGS-----LLSPIYFQFFLDKLASS  149 (345)
Q Consensus        75 visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~-----~L~~~Y~~~fcDKlv~~  149 (345)
                      +..-+....+..+ -+++.....|.++.|.--|-....|+||..+...+......+..     .+++.-..-+.+.++..
T Consensus        54 Lr~~iy~~~a~~~-l~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~  132 (234)
T PF10474_consen   54 LREPIYKCVASRL-LDLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFF  132 (234)
T ss_pred             HHHHHHHHHHHHH-cCHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3333444444433 36678889999999987777778999999999999887666633     33566667777888888


Q ss_pred             HHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHH
Q 019132          150 LGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR  229 (345)
Q Consensus       150 fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~  229 (345)
                      +...+++..=+.|+-|..|--+|.||.+.+...|-.+-...   +.|         +.+-.|..+|..=-|.+.+.+==.
T Consensus       133 ~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~---~~p---------~~~~Ve~YIKAyYl~e~e~~~W~~  200 (234)
T PF10474_consen  133 AFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIR---PIP---------NREYVENYIKAYYLPEEELEEWIR  200 (234)
T ss_pred             HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCC---CCc---------cHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888899999999999999999999998775422   222         234455777777777654333223


Q ss_pred             hhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 019132          230 ALLPEGTPMEFQRILELK-GLKKADQQTILDDF  261 (345)
Q Consensus       230 ~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f  261 (345)
                      .. ++.|...+..++..- +.+|.+.+.+++..
T Consensus       201 ~h-~eYs~~ql~~Lv~~~~~~~kk~r~~ll~~i  232 (234)
T PF10474_consen  201 TH-TEYSKKQLVGLVNCAAASKKKTRQRLLNAI  232 (234)
T ss_pred             hC-cccCHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            33 678888888888776 55788888887754

The N-terminal domain of some members is PF10475 from PFAM (DUF2450).

>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.012  Score=62.89  Aligned_cols=212  Identities=12%  Similarity=0.191  Sum_probs=159.5

Q ss_pred             CccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc----------ccchhhhHHHHHHHHHHHHHHHH-Hhhhc
Q 019132           23 SERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV----------DMSEVQDEFSAVITKALVTLVLG-LETKF   91 (345)
Q Consensus        23 ~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI----------df~~e~D~F~~visk~I~~LV~~-le~~l   91 (345)
                      ++......-.-+|++|-|.+-+..|-+.+.+.+.+-|...+          ++.+..+.|-++.+.|++.|... +-..+
T Consensus       537 ~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi  616 (773)
T KOG0412|consen  537 ADLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRI  616 (773)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            33444556678999988888777776666655554443322          56677789999999999999996 45899


Q ss_pred             hHHhhcccCCCCCC-CccC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChh
Q 019132           92 DNEMAGMTRVPWGS-LESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISET  167 (345)
Q Consensus        92 e~a~~~m~~~nW~~-~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~  167 (345)
                      +|.+..+.+++..- .+..   +.+-+||.+....+.+.+--+++.|.+..+..|..-+++.++...=..|+||+ .+..
T Consensus       617 ~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~-FNrl  695 (773)
T KOG0412|consen  617 RPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ-FNRL  695 (773)
T ss_pred             hhhhhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH-HHhh
Confidence            99998888887752 2222   23457999999999999999999998888888888777777777666677776 8999


Q ss_pred             hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhCCC-----CCHHHHHH
Q 019132          168 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPE-----GTPMEFQR  242 (345)
Q Consensus       168 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~~d-----~S~~~Fqk  242 (345)
                      ||=||=-|+.+|=..|...-            .-.|...|.||-.|+-+|.-..+.....|+.--..     -|+++-.+
T Consensus       696 G~lqLDre~r~lis~lt~~t------------~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~  763 (773)
T KOG0412|consen  696 GGLQLDRELRALISYLTGVT------------QWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRK  763 (773)
T ss_pred             cchHhhHHHHHHHHHhhccc------------chhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHH
Confidence            99999999999998883222            35688899999999999988877777777543211     35666688


Q ss_pred             HHhhc
Q 019132          243 ILELK  247 (345)
Q Consensus       243 IL~LK  247 (345)
                      +|.||
T Consensus       764 vl~lr  768 (773)
T KOG0412|consen  764 VLALR  768 (773)
T ss_pred             HHHhh
Confidence            88887

>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins []

Probab=96.38  E-value=0.55  Score=50.90  Aligned_cols=208  Identities=12%  Similarity=0.123  Sum_probs=144.3

Q ss_pred             CccchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcc----cchhhhHHH----HHHHHHHHHHHHHHhhhchHH
Q 019132           23 SERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVD----MSEVQDEFS----AVITKALVTLVLGLETKFDNE   94 (345)
Q Consensus        23 ~~e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekId----f~~e~D~F~----~visk~I~~LV~~le~~le~a   94 (345)
                      +..++. -.-+||.|+-...+++.--+.   .+-|-.....+    ....+..|.    +-++.+++..+..+...++..
T Consensus       479 ~~~~l~-fl~~i~~~~~i~~l~~~~~~~---~l~pl~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~i  554 (710)
T PF07393_consen  479 EVPPLV-FLELINQADTILQLLQIFYKE---ELLPLIQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFI  554 (710)
T ss_pred             CCCCcc-HHHHHHHHHHHHHHHHHHHHH---HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335666 555889988877777644332   22222222222    223333333    334455555555666666777


Q ss_pred             hhcccCCCCCCCcc-C---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHh
Q 019132           95 MAGMTRVPWGSLES-V---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQ  170 (345)
Q Consensus        95 ~~~m~~~nW~~~e~-V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gae  170 (345)
                      +..-.+.+...-+. .   ...++-...++..|......+...+....+..|+-.+...|...++.++.|.+ ++..||=
T Consensus       555 L~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk~~-vs~~Gg~  633 (710)
T PF07393_consen  555 LSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKKFT-VSSTGGL  633 (710)
T ss_pred             HhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhCc-cCchhHH
Confidence            77555666664222 2   25888999999999999999999999888999999999999999999987654 8999999


Q ss_pred             hHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHHhhC-CCCCHHHHHHHHhhc
Q 019132          171 QMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALL-PEGTPMEFQRILELK  247 (345)
Q Consensus       171 QLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~~L~-~d~S~~~FqkIL~LK  247 (345)
                      +|.-|+.....++.++-            .+.|...|+.|-.+..++..++|.+.+-..... +.-+..+....+.++
T Consensus       634 ~l~~Dl~~Y~~~~~~~~------------~~~v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~R  699 (710)
T PF07393_consen  634 QLIKDLNEYQDFIRSWG------------IPSVDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQRR  699 (710)
T ss_pred             HHHHHHHHHHHHHHHcC------------CchHHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHHh
Confidence            99999999999998873            367999999999999999999876655543332 223444444444443

; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm

>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.28  Score=53.39  Aligned_cols=186  Identities=15%  Similarity=0.174  Sum_probs=129.1

Q ss_pred             hcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchh--hhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCC
Q 019132           33 IVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEV--QDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVG  110 (345)
Q Consensus        33 IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e--~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~Vg  110 (345)
                      |+-+-+|...-..++.+-++....-+..+   .+.-  .=.|..--+.+-..|...+..+++..+.-. +.+|...|..+
T Consensus       551 I~~n~~~fe~a~~~f~~~a~~~~~~~~~~---~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l~-~~dW~t~e~pq  626 (800)
T KOG2176|consen  551 IAANLDYFEIAADFFLEFACHLNGIPNRD---AERPSSSTKLLASRKLAETELIELIKLKIDDFLELI-EYDWTTTEVPQ  626 (800)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHccCCcccc---ccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHHh-hccccccccCC
Confidence            44445566666666666665554322111   1111  233444445555566666777777666554 99999999999


Q ss_pred             CcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhhCCC
Q 019132          111 DQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLDIPS  188 (345)
Q Consensus       111 D~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~LP~  188 (345)
                      |.|.|+..+..-|...+.....+|+-.-....|-...+.+..++++.+..+  |.|++.+++|+.+|+..+..+--+=|.
T Consensus       627 ~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~  706 (800)
T KOG2176|consen  627 GPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPV  706 (800)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCC
Confidence            999999999999999999999999988888889899999999999999887  779999999999999999988877333


Q ss_pred             CCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC-chhHHHHHH
Q 019132          189 LGRQTSNAASYTKFVSREMSKAEALLKVILSP-VDSVADTYR  229 (345)
Q Consensus       189 ~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP-~e~~ve~Y~  229 (345)
                      .+.+       .......|=.+..++-+|++. .|.|.+.|.
T Consensus       707 ~~~~-------~~~~~~~fielrQlinLL~~~~~e~y~~~~~  741 (800)
T KOG2176|consen  707 PPNQ-------EGVLAKAFIELRQLINLLLLSDWETYLNDYG  741 (800)
T ss_pred             CCcc-------cchhHHHHHHHHHHHHHHHhcCHHHhhCchh
Confidence            2221       112233344445777777755 455554443

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=95.59  E-value=1.1  Score=49.29  Aligned_cols=152  Identities=17%  Similarity=0.236  Sum_probs=112.6

Q ss_pred             CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC-CCCCC--CccCC-----C----cCccHHHHHHHHhhhHHH
Q 019132           62 GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR-VPWGS--LESVG-----D----QSEYVNGINMILTSSIPV  129 (345)
Q Consensus        62 kIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~-~nW~~--~e~Vg-----D----~S~YV~~i~~~L~~~~~~  129 (345)
                      ..-|......+..+...|.....+.+...+...+..+.+ ..|..  ....+     +    ++.||++|-+.|-.--..
T Consensus       560 ~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~  639 (766)
T PF10191_consen  560 FSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQ  639 (766)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHh
Confidence            346888899999988888888888899999999999987 47886  21111     2    367888888877643333


Q ss_pred             Hhhhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHH
Q 019132          130 LGSLLS----------------------------PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKT  181 (345)
Q Consensus       130 i~~~L~----------------------------~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~  181 (345)
                      +.+++.                            +..-..++++++......|.+.|.++..+++.|+.||..|+.=|.+
T Consensus       640 LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~n  719 (766)
T PF10191_consen  640 LEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSN  719 (766)
T ss_pred             hhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence            322221                            1456688999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCchhHHHHHH
Q 019132          182 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR  229 (345)
Q Consensus       182 ~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~e~~ve~Y~  229 (345)
                      .|..|=...     |           ..+..+..+|.+|+|.|.+.-.
T Consensus       720 Vl~aLg~~~-----~-----------~~L~~~~~ll~~~~~~~~~~~~  751 (766)
T PF10191_consen  720 VLSALGLSP-----P-----------PNLQQLVTLLKAPPDQYAQVAK  751 (766)
T ss_pred             HHHHhCCCC-----C-----------HHHHHHHHHHcCCHHHHHHHHh
Confidence            998875311     1           1345667777888865554443

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.65  E-value=1.4  Score=48.59  Aligned_cols=186  Identities=16%  Similarity=0.240  Sum_probs=134.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHH
Q 019132           65 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQ  140 (345)
Q Consensus        65 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~  140 (345)
                      +++.-|.|-.+..+|+-.|=-.+-.-|=..+....+    .-|+..+ .|+.-+-|..+.+.|...-.-+...|++.=++
T Consensus       775 ~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~  853 (982)
T KOG3691|consen  775 YEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLKACLNEWKRR  853 (982)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            445678899999999877666666666666554433    3466544 67888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC
Q 019132          141 FFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP  220 (345)
Q Consensus       141 ~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP  220 (345)
                      +..+=+...+-..+++.-..++.+++.|..||+-.+..|.+.|..+-..           +  .-.|++.-++--++..-
T Consensus       854 yIFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~-----------r--evdld~ar~fy~ll~nt  920 (982)
T KOG3691|consen  854 YIFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITES-----------R--EVDLDKARRFYELLQNT  920 (982)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc-----------c--ccccHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999888762           2  44566666777777655


Q ss_pred             chhHHHHHHhhCCCCCHHHHHHHHhh-----cCCC-HHHHHHHHHHHHhc
Q 019132          221 VDSVADTYRALLPEGTPMEFQRILEL-----KGLK-KADQQTILDDFNKH  264 (345)
Q Consensus       221 ~e~~ve~Y~~L~~d~S~~~FqkIL~L-----KGl~-k~eq~~lle~f~~~  264 (345)
                      ++.+.+....-=..-|.++...+|.+     ||+- +.-+..+++.+.+.
T Consensus       921 ~deile~v~d~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~  970 (982)
T KOG3691|consen  921 ADEILEHVIDARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNI  970 (982)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHH
Confidence            54444433322222445555555544     5543 34455555555443

>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]

Probab=91.43  E-value=8.8  Score=41.94  Aligned_cols=155  Identities=18%  Similarity=0.278  Sum_probs=105.5

Q ss_pred             hhhcccHHHHHHhHHHHHHH---------HHHhhhhhc---cCCcc--cchhhhHHHHHHHHHHHHHHHHHhhhchHHhh
Q 019132           31 CYIVNSAEYCHKTSGDLAES---------VSKIIDSQL---ADGVD--MSEVQDEFSAVITKALVTLVLGLETKFDNEMA   96 (345)
Q Consensus        31 C~IINTADYC~~Ti~qLeek---------l~e~id~~~---kekId--f~~e~D~F~~visk~I~~LV~~le~~le~a~~   96 (345)
                      |-++|.--|....+....+-         +-+ .+...   ....+  |.++.+....+.+.-+.-++..+-..+++..+
T Consensus       501 i~~~n~VNyvervl~ews~nv~fl~l~~a~~d-~~v~~l~e~~~~ns~F~~~~~~leel~~~~~~~~iv~~l~~~~~~~r  579 (737)
T KOG2218|consen  501 IAILNSVNYVERVLKEWSSNVVFLDLADAVED-EDVYMLHEATSGNSVFEEVSNFLEELMSTWMLKLIVHLLQNLKDLLR  579 (737)
T ss_pred             HHhhhhHHHHHHHHHHHhcchhHHHHHHHhhc-ccccccccccccchhHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Confidence            55666666877776644332         222 11110   11123  66666666666666677777777777899999


Q ss_pred             cccCCCCCCCccCCCc-----CccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHH-HHHHhHhccCCChhhHh
Q 019132           97 GMTRVPWGSLESVGDQ-----SEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPR-FYANIFKCKHISETGAQ  170 (345)
Q Consensus        97 ~m~~~nW~~~e~VgD~-----S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~-f~~~I~k~kpis~~gae  170 (345)
                      +..+.+|.+.+.-...     |+=+......|+.....+...+++.-|..+..-++..+..- |...|++....+.-|++
T Consensus       580 ~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~fs~~~~~l~~~idv~~~~e~il~~~~f~~~~~~  659 (737)
T KOG2218|consen  580 NYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDFSAIWRNLQENIDVYVFEEIILKNHKFESSGLF  659 (737)
T ss_pred             hhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhhhhHHHHHHHHHhhhhcCchHHH
Confidence            9999999877652211     45566666777778888888888777777776665555444 44555676889999999


Q ss_pred             hHHhhHHHHHHHHhhC
Q 019132          171 QMLLDTQAVKTILLDI  186 (345)
Q Consensus       171 QLLLD~~sLK~~Ll~L  186 (345)
                      |+..|+..|...|..+
T Consensus       660 ~f~~Da~~L~~~fs~y  675 (737)
T KOG2218|consen  660 QFVHDAKRLLEVFSEY  675 (737)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999999665

>PF14923 CCDC142: Coiled-coil protein 142

Probab=91.16  E-value=11  Score=39.15  Aligned_cols=115  Identities=18%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             CCCCCCccC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhcc-CCChhhHhhHHhhH
Q 019132          101 VPWGSLESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCK-HISETGAQQMLLDT  176 (345)
Q Consensus       101 ~nW~~~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~k-pis~~gaeQLLLD~  176 (345)
                      .-|...-..   ...|.||....+.+-.-+-.--..+++.+=---..-.+..|+-.-++.|++=| +.|..||.||+-|.
T Consensus       260 ~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF  339 (450)
T PF14923_consen  260 RYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDF  339 (450)
T ss_pred             chhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHH
Confidence            568643222   36799999988877433333233556666666666678888888899998763 48999999999999


Q ss_pred             HHHHHHHhh-CCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcC
Q 019132          177 QAVKTILLD-IPSLGRQTSNAASYTKFVSREMSKAEALLKVILS  219 (345)
Q Consensus       177 ~sLK~~Ll~-LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~s  219 (345)
                      ..++..+.+ --.+.++.    +=+=.-..-|.++|..+++|+-
T Consensus       340 ~~Vr~wl~~e~~~Ls~e~----rq~Ll~l~v~r~~dgv~~lLlq  379 (450)
T PF14923_consen  340 GYVRDWLESECSGLSPEL----RQTLLSLEVFRRCDGVGLLLLQ  379 (450)
T ss_pred             HHHHHHHHhhhccCCHHH----HHHHhccHHHHHHHHHHHHHhc
Confidence            999999977 44432211    1111224567899999999874

>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.82  E-value=25  Score=37.68  Aligned_cols=154  Identities=14%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             ccHHHHHHhHHHHHHHHHHhhhhhccC-----CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCC
Q 019132           35 NSAEYCHKTSGDLAESVSKIIDSQLAD-----GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGS  105 (345)
Q Consensus        35 NTADYC~~Ti~qLeekl~e~id~~~ke-----kIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~  105 (345)
                      .+.+-..+-.+.|-+-|..++...-+.     .+.++.-.+.+..+.-.--+.||..+...|..-++...-    ..|.+
T Consensus       485 dd~~llqevl~elle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~Tn  564 (705)
T KOG2307|consen  485 DDGNLLQEVLPELLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTN  564 (705)
T ss_pred             ccchHHHHHhHHHHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhcc
Confidence            455555666666666666665322100     012222333333333333344555555555555555444    46887


Q ss_pred             CccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHH--------------HHHHHhHhccCCChh----
Q 019132          106 LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGP--------------RFYANIFKCKHISET----  167 (345)
Q Consensus       106 ~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~--------------~f~~~I~k~kpis~~----  167 (345)
                      -+-..-.|+||.++.+-+.....-...-|.......++.+++..+..              +=-.++-|+|.....    
T Consensus       565 KevPtthSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~  644 (705)
T KOG2307|consen  565 KEVPTTHSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS  644 (705)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence            77788999999998877765433332223222333333333333333              333455555433221    


Q ss_pred             -------------hHhhHHhhHHHHHHHHhhCCC
Q 019132          168 -------------GAQQMLLDTQAVKTILLDIPS  188 (345)
Q Consensus       168 -------------gaeQLLLD~~sLK~~Ll~LP~  188 (345)
                                   ..+||.+|++..-..+-+|--
T Consensus       645 s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~f  678 (705)
T KOG2307|consen  645 SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVF  678 (705)
T ss_pred             CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcc
Confidence                         568899999888877766644

>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []

Probab=83.80  E-value=5.3  Score=34.12  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             CCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHH
Q 019132          103 WGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTI  182 (345)
Q Consensus       103 W~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~  182 (345)
                      |.+-+.....|.||..|..=|.++.......+.+.-...++.++++.+..+|++.+           ..+|-.+.-....
T Consensus        24 ~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~-----------~evL~sv~KtEeS   92 (125)
T PF12022_consen   24 MTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA-----------SEVLTSVRKTEES   92 (125)
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            54445677899999999999999999998888888899999999999999988764           3444444445555


Q ss_pred             HhhCCC
Q 019132          183 LLDIPS  188 (345)
Q Consensus       183 Ll~LP~  188 (345)
                      |..|..
T Consensus        93 L~rlkk   98 (125)
T PF12022_consen   93 LKRLKK   98 (125)
T ss_pred             HHHHHH
Confidence            555443

This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
3ns4_A	271	Vacuolar protein sorting-associated protein 53; GA	7e-27
3fhn_A	706	Protein transport protein TIP20; TIP20P, vesicle t	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2a2f_X	325	Exocyst complex component SEC15; all helical struc	6e-04

>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae} Length = 271

 Score =  106 bits (264), Expect = 7e-27
 Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 29/178 (16%)

Query: 128 PVLGSLLSPIYFQFFLDKLASSLGPRFYANIFK-CKHISETG----------------AQ 170
            +L      +Y   FLDK+   +   F +N  +  + +                     +
Sbjct: 13  FILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGE 72

Query: 171 QMLLDTQAVKTILLDIP------SLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSV 224
           Q+LLD + +K I   +P      S  R+ ++     +     + +    +K++++P+DS 
Sbjct: 73  QLLLDLELLKEIFHTLPESVSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSA 132

Query: 225 AD---TYRALLPEGT-PMEFQRILELKGLK--KADQQTILDDFNKHGPGTTQPTIAPS 276
            D   TY  L         +  +L LKG+    A  + +   +N     T + +   S
Sbjct: 133 DDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLETDDTDEGSRPDS 190

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae} Length = 706

 Score = 53.0 bits (126), Expect = 7e-08
 Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 31/277 (11%)

Query: 2   QQSFLQDYQEVVQGLLQQLLISERDERV--ICYIVNSAEYCHKTSGDLAESVSKIIDSQL 59
             +    Y + +  +        +++ +      +    + ++    L+ +   I  + +
Sbjct: 432 FMNLTSSYLDYILTVDSLNETRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDI 491

Query: 60  ADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR---------VPWGSLESVG 110
            +  +  +    F  V       +   ++    + +  + +           W +LE   
Sbjct: 492 VNSTESKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSV 551

Query: 111 DQSEYVN------GINMI--LTSSIPVLGSL-LSPIYFQFFLDKLASSLGPRFYANIFKC 161
           D++   +       +N I  L   I  L S+ +         ++L + +   F  +I K 
Sbjct: 552 DENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKL 611

Query: 162 KHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV 221
              ++ G  Q L D +++ + +L +PS           T +    + +   +LK+   P 
Sbjct: 612 NKFNQNGLNQFLHDFKSLSS-ILSLPS---------HATNYKCMSLHELVKILKLKYDPN 661

Query: 222 DSVADTYRALLPEGTPMEFQRILELKGLKKADQQTIL 258
           +         +  G     +    +K LK    Q  L
Sbjct: 662 NQQF-LNPEYIKTGNFTSLKEAYSIKYLKDTKIQDAL 697

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 63/363 (17%), Positives = 128/363 (35%), Gaps = 86/363 (23%)

Query: 34  VNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDN 93
               +Y +K   D+   +S   D+ + +  D  +VQD   ++++K  +  ++       +
Sbjct: 11  TGEHQYQYK---DI---LSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMS----KD 59

Query: 94  EMAGMTRVPWGSLESVGDQ--SEYVNGINMI----LTSSI---PVLGSLLSPIYFQFFLD 144
            ++G  R+ W +L S  ++   ++V  +  I    L S I       S+++ +Y +   D
Sbjct: 60  AVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRD 117

Query: 145 KLASSLGPRF--YANIFKCKHISETGAQQMLLDTQAVKTILLD-IPSLGRQ--TSNAASY 199
           +L +     F  Y N+ + +   +   +Q LL+ +  K +L+D +   G+     +    
Sbjct: 118 RLYND-NQVFAKY-NVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 200 TKFVSR-----------EMSKAEALLKVI--LSPVDSVADTYRALLPEGTPM-------E 239
            K   +             +  E +L+++  L        T R+       +       E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 240 FQRILELKGLKKADQQTILDD---------FNKHGPG-----TTQPTIAPSVVPAAPPAP 285
            +R+L+ K  +      +L +         FN          TT+      V      A 
Sbjct: 234 LRRLLKSKPYENC--LLVLLNVQNAKAWNAFN---LSCKILLTTRFK---QVTDFLSAAT 285

Query: 286 PSSVIPNSASAGFITSRE--DVLTRAAALGRGA------ATTGFKRFLALTEAAKDRKDG 337
            + +  +  S    T  E   +L     L            T   R L++  A   R DG
Sbjct: 286 TTHISLDHHSMTL-TPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSII-AESIR-DG 340

Query: 338 PFR 340
              
Sbjct: 341 LAT 343

>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Length = 325

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 10/188 (5%)

Query: 11  EVVQGLLQQLL-ISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQ 69
               G L  +          +  I+   +Y  K    L E V  + +++ +     S + 
Sbjct: 119 RSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSAM- 177

Query: 70  DEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPV 129
             F      A   + L + +K D     ++   W  +E  G  S ++  +   L S+   
Sbjct: 178 --FHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVEPPGIASAFITDMISYLKSTFDS 234

Query: 130 LGSLLSPIYFQFFLDKLASSLGPRFYANIFK--CKHISETGAQQMLLDTQAVKTIL--LD 185
               L  I            +  + Y+ ++    K IS     Q+ LD    +       
Sbjct: 235 FAFKLPHIAQAACRRTF-EHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEP 293

Query: 186 IPSLGRQT 193
           +P L    
Sbjct: 294 VPGLKEGE 301

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
3ns4_A	271	Vacuolar protein sorting-associated protein 53; GA	100.0
2fji_1	399	Exocyst complex component SEC6; exocytosis, tandem	99.9
3fhn_A	706	Protein transport protein TIP20; TIP20P, vesicle t	98.51
3hr0_A	263	COG4; conserved oligomeric golgi complex, intracel	98.37
2a2f_X	325	Exocyst complex component SEC15; all helical struc	98.13
3swh_A	341	MUNC13-1, protein UNC-13 homolog A; alpha helical,	97.37
3n1e_A	141	Vacuolar protein sorting-associated protein 54; sp	96.95

>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-36  Score=278.45  Aligned_cols=139  Identities=19%  Similarity=0.305  Sum_probs=124.5

Q ss_pred             HHhhhc-cHHHHHHHHHHHHHHHHHHHHHHh-HhccCC---------------Chh-hHhhHHhhHHHHHHHHhhCCCCC
Q 019132          129 VLGSLL-SPIYFQFFLDKLASSLGPRFYANI-FKCKHI---------------SET-GAQQMLLDTQAVKTILLDIPSLG  190 (345)
Q Consensus       129 ~i~~~L-~~~Y~~~fcDKlv~~fi~~f~~~I-~k~kpi---------------s~~-gaeQLLLD~~sLK~~Ll~LP~~~  190 (345)
                      .|...+ ++.|+||||||+|++|+++|+++| ++|||+               +++ ||||||||+|+||++|++||+.+
T Consensus        13 ~Il~~~nR~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~   92 (271)
T 3ns4_A           13 FILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESV   92 (271)
T ss_dssp             CCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHccccc
Confidence            344444 789999999999999999999999 789999               889 99999999999999999999886


Q ss_pred             CC---CCCc---hhhHHHHHHhHHHHHHHhHHhcCCc---hhHHHHHHhhCCC-CCHHHHHHHHhhcCCC--HHHHHHHH
Q 019132          191 RQ---TSNA---ASYTKFVSREMSKAEALLKVILSPV---DSVADTYRALLPE-GTPMEFQRILELKGLK--KADQQTIL  258 (345)
Q Consensus       191 ~~---~~~~---~sY~K~V~~~~~klE~lLKvL~sP~---e~~ve~Y~~L~~d-~S~~~FqkIL~LKGl~--k~eq~~ll  258 (345)
                      ++   ..+|   ++|+|+|+++|++||++|||||+|.   |+||++|..|+|| +|..+|+|||+|||++  ++++.+|.
T Consensus        93 ~~~~~~~~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~wdl~~wk~~~  172 (271)
T 3ns4_A           93 SNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMW  172 (271)
T ss_dssp             CSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCCSCHHHHHHHH
T ss_pred             ccccccCCCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccHHHHHHHH
Confidence            52   2455   6899999999999999999999984   7899999999999 9999999999999996  89999999


Q ss_pred             HHHHhcCCC
Q 019132          259 DDFNKHGPG  267 (345)
Q Consensus       259 e~f~~~~~~  267 (345)
                      +.|+....+
T Consensus       173 ~~f~l~~~~  181 (271)
T 3ns4_A          173 SAYNLETDD  181 (271)
T ss_dssp             HHHHHHC--
T ss_pred             HHHhhcccc
Confidence            999976444

>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-22  Score=199.98  Aligned_cols=222  Identities=10%  Similarity=0.140  Sum_probs=205.2

Q ss_pred             chhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 019132           26 DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW  103 (345)
Q Consensus        26 ~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekI--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW  103 (345)
                      -+.++|.++|++..|.+.+.+|+.++.+.+++.|.+++  +|+...|+|.++.+.|++.|+..+..+++|.|..++...|
T Consensus       135 ~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W  214 (399)
T 2fji_1          135 LVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTW  214 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGG
T ss_pred             HHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence            37899999999999999999999999999999998877  8999999999999999999999999999999999999999


Q ss_pred             CCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCC---hhhHhhHHhhHHHHH
Q 019132          104 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHIS---ETGAQQMLLDTQAVK  180 (345)
Q Consensus       104 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis---~~gaeQLLLD~~sLK  180 (345)
                      ...       ++|.+|+.++.++++.++.+|++.|+..|++.+.+.++.+|+.+|.++.+++   ..+++||..|.+.|+
T Consensus       215 ~~~-------~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~  287 (399)
T 2fji_1          215 YMG-------SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFY  287 (399)
T ss_dssp             TTC-------CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred             cCC-------cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence            752       2999999999999999999999999999999999999999999999755577   899999999999999


Q ss_pred             HHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhHHHHHHhh---CCCCCHHHHHHHHhhc-CCCHHHHH
Q 019132          181 TILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRAL---LPEGTPMEFQRILELK-GLKKADQQ  255 (345)
Q Consensus       181 ~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~ve~Y~~L---~~d~S~~~FqkIL~LK-Gl~k~eq~  255 (345)
                      .+|.++++.      ..+|++.|...+..++.+.. |.+++ +.+.+.|..+   .||.+...+++||.+| +++|++++
T Consensus       288 ~~f~~~~~~------~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k  360 (399)
T 2fji_1          288 QLFVKVLDG------NESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERK  360 (399)
T ss_dssp             HHHHHHTTT------CTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHH
T ss_pred             HHHHHhccc------cchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHH
Confidence            999999972      45789999999999999999 88776 8888888555   6789999999999997 69999999


Q ss_pred             HHHHHH
Q 019132          256 TILDDF  261 (345)
Q Consensus       256 ~lle~f  261 (345)
                      ++++..
T Consensus       361 ~ll~~~  366 (399)
T 2fji_1          361 KIVQQA  366 (399)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999999

>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}

Probab=98.51  E-value=8.1e-07  Score=93.69  Aligned_cols=240  Identities=15%  Similarity=0.215  Sum_probs=178.7

Q ss_pred             hhHHHHHHHHHhc--ccccccCCccchhhhhhhcccHHHHHHhHH---------HHHHHHHHhhhhhccCCcccchhhhH
Q 019132            3 QSFLQDYQEVVQG--LLQQLLISERDERVICYIVNSAEYCHKTSG---------DLAESVSKIIDSQLADGVDMSEVQDE   71 (345)
Q Consensus         3 ~~~l~~y~~~i~~--~~~~~~~~~e~~k~~C~IINTADYC~~Ti~---------qLeekl~e~id~~~kekIdf~~e~D~   71 (345)
                      -.++-.|..-+..  ..++-..+++.....|..||+.-|...++.         +|-+.+.++.+..  +.--|++.-..
T Consensus       433 iqL~d~Y~~~L~~~s~lgr~~tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~--~gSIFDetIs~  510 (706)
T 3fhn_A          433 MNLTSSYLDYILTVDSLNETRTKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKK--YNSLFQNVEND  510 (706)
T ss_dssp             HHHHHHHHHHHHTCCCSCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCC--CSCTTHHHHHH
T ss_pred             HhhHHHHHHHHhCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCcc--cCccHHHHHHH
Confidence            3455556665542  111111222234556667777777776666         5555566554433  23469999999


Q ss_pred             HHHHHHH-HHHHHHHHHhhhchHHhhcccC-CCCCCCccCCC--------cCccHHHHHHHHhhhHHHHhhh-ccHHHHH
Q 019132           72 FSAVITK-ALVTLVLGLETKFDNEMAGMTR-VPWGSLESVGD--------QSEYVNGINMILTSSIPVLGSL-LSPIYFQ  140 (345)
Q Consensus        72 F~~visk-~I~~LV~~le~~le~a~~~m~~-~nW~~~e~VgD--------~S~YV~~i~~~L~~~~~~i~~~-L~~~Y~~  140 (345)
                      |..+..+ ....+|..+...++.+++...+ ..|.+++...+        .|+-...+.+.|+..+..+... |+...|+
T Consensus       511 Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~  590 (706)
T 3fhn_A          511 YEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISL  590 (706)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence            9999999 9999999999999999999988 57987654433        2777888999999999999998 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCC
Q 019132          141 FFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP  220 (345)
Q Consensus       141 ~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP  220 (345)
                      .+...+++.+..-+++.|+.....+..||.|+..|+..|...|- +|..         +   ....|.++.-.|++|.-|
T Consensus       591 ~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~---------~---~~~~~~~L~E~l~LL~L~  657 (706)
T 3fhn_A          591 KVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSH---------A---TNYKCMSLHELVKILKLK  657 (706)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTT---------C---CCHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCCc---------c---hhhHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999998776 6641         1   334788888999999888


Q ss_pred             chhHHHHHH--hhCCCCCHHHHHHHHhhcCCCHHHHHHH
Q 019132          221 VDSVADTYR--ALLPEGTPMEFQRILELKGLKKADQQTI  257 (345)
Q Consensus       221 ~e~~ve~Y~--~L~~d~S~~~FqkIL~LKGl~k~eq~~l  257 (345)
                      .+.=.+.|.  ..++.+...++...+.+|-++-+|.+..
T Consensus       658 ~d~~~~~f~~~~y~~~~~~~~l~~~~~i~~l~~~~i~d~  696 (706)
T 3fhn_A          658 YDPNNQQFLNPEYIKTGNFTSLKEAYSIKYLKDTKIQDA  696 (706)
T ss_dssp             GCGGGTTTTSHHHHHHCCCSHHHHHHTCSSSCHHHHHHH
T ss_pred             CCcchhhHHHHHHHccCChHHHHHhcCcccCCHHHHHHH
Confidence            642222222  3335677789999999999998886544

>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}

Probab=98.37  E-value=1.7e-05  Score=74.69  Aligned_cols=219  Identities=14%  Similarity=0.260  Sum_probs=162.8

Q ss_pred             cchhhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCC---------c-----ccchhhhHHHHHHHHHHHHHH-HHHhh
Q 019132           25 RDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADG---------V-----DMSEVQDEFSAVITKALVTLV-LGLET   89 (345)
Q Consensus        25 e~~k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kek---------I-----df~~e~D~F~~visk~I~~LV-~~le~   89 (345)
                      +-+..-|..||+.|-|.+-+.+|-..+.+.+...|...         |     +|.+..+.|.++++.||+.|. +.+-.
T Consensus        17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikp   96 (263)
T 3hr0_A           17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKP   96 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34455788899998888888877666665555544331         1     345556788899999999998 57889


Q ss_pred             hchHHhhcccCCCCCCCcc----CCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCC
Q 019132           90 KFDNEMAGMTRVPWGSLES----VGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHIS  165 (345)
Q Consensus        90 ~le~a~~~m~~~nW~~~e~----VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis  165 (345)
                      .+.|.+..+..++..--|.    .+..-+++..+...+...+.-++.+|.+..|..+..-+++.++..+=..|.+ ++++
T Consensus        97 rLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn  175 (263)
T 3hr0_A           97 QVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-STFN  175 (263)
T ss_dssp             HHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCBC
T ss_pred             HHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh-CCcC
Confidence            9999998888877653211    0112257889999999999999999998889888888888877766666666 6799


Q ss_pred             hhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc-hhHHHHHHhh----CCCCCHHHH
Q 019132          166 ETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRAL----LPEGTPMEF  240 (345)
Q Consensus       166 ~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~-e~~ve~Y~~L----~~d~S~~~F  240 (345)
                      +.||=||=-|+..|-..+.....          |.  |...|.|+-.|.-||.... |...+-|..-    .-.-|+.+-
T Consensus       176 ~lGal~LdrDvr~li~~~~~~~~----------~~--lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~  243 (263)
T 3hr0_A          176 RLGGLQFDKELRSLIAYLTTVTT----------WT--IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEV  243 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSC----------TT--HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhccc----------hh--hhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHH
Confidence            99999999999999999966432          33  7899999999999997653 3333323221    113688999


Q ss_pred             HHHHhhc-CCCHHHHHH
Q 019132          241 QRILELK-GLKKADQQT  256 (345)
Q Consensus       241 qkIL~LK-Gl~k~eq~~  256 (345)
                      .+|+.+| +.+..+..+
T Consensus       244 r~il~lRvDf~~e~I~~  260 (263)
T 3hr0_A          244 RQVLALRIDFRSEDIKR  260 (263)
T ss_dssp             HHHHTTBTTSCHHHHHH
T ss_pred             HHHHHhhccCCHHHHHh
Confidence            9999999 777777654

>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}

Probab=98.13  E-value=3.2e-05  Score=74.92  Aligned_cols=181  Identities=18%  Similarity=0.213  Sum_probs=136.4

Q ss_pred             hhhhhhcccHHHHHHhHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCc
Q 019132           28 RVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLE  107 (345)
Q Consensus        28 k~~C~IINTADYC~~Ti~qLeekl~e~id~~~kekIdf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e  107 (345)
                      ..+=++||+. |...-...||+-+......+-..  .+ ...+.|.+..+.|-+.+...+..+++.-+ ++...||...+
T Consensus       138 qi~Qi~iNl~-~le~ac~~le~~l~~~~~~~~~~--~l-~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~  212 (325)
T 2a2f_X          138 QLIQIIIDTQ-YLEKAGPFLDEFVCHMTNTERSV--SQ-TPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVE  212 (325)
T ss_dssp             HHHHHHHHHH-HHHTTHHHHHHHHHHHHTCCC----------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC---
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCC
Confidence            3344566764 55788888988888865443222  23 25677888888899999999999999999 99999999999


Q ss_pred             cCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhh
Q 019132          108 SVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLD  185 (345)
Q Consensus       108 ~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~  185 (345)
                      .-++.|.||.++...|+..+. ....|++......|-.....+..++++.+..-  |.|+..|.+|+-+|+.-+..+.-+
T Consensus       213 ~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~  291 (325)
T 2a2f_X          213 PPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAAS  291 (325)
T ss_dssp             -CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999 47788999999999999999999999999855  999999999999999999999988


Q ss_pred             CCCCCCCCCCchhhHHHHHHhHHHHHHHhHHhcCCc
Q 019132          186 IPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV  221 (345)
Q Consensus       186 LP~~~~~~~~~~sY~K~V~~~~~klE~lLKvL~sP~  221 (345)
                      .|..+-..       ..+...|..+..++-++++-.
T Consensus       292 ~~v~~l~~-------~~L~~~F~eLrQli~Ll~~~~  320 (325)
T 2a2f_X          292 EPVPGLKE-------GELSKYFLRNRQLLDLLILEH  320 (325)
T ss_dssp             CSSSSCCS-------STTGGGGHHHHHHHHHHHCC-
T ss_pred             CCCCCccc-------chHHHHHHHHHHHHHHHHhhh
Confidence            66543211       225567777888888887653

>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}

Probab=97.37  E-value=0.0021  Score=62.50  Aligned_cols=212  Identities=15%  Similarity=0.246  Sum_probs=125.2

Q ss_pred             HHHHHHHHhcccccccCCccchhhhhhhcccHHHHHHhHHHHHHHHH-HhhhhhccCCcccchhhhHHHHHHHHHHHHHH
Q 019132            6 LQDYQEVVQGLLQQLLISERDERVICYIVNSAEYCHKTSGDLAESVS-KIIDSQLADGVDMSEVQDEFSAVITKALVTLV   84 (345)
Q Consensus         6 l~~y~~~i~~~~~~~~~~~e~~k~~C~IINTADYC~~Ti~qLeekl~-e~id~~~kekIdf~~e~D~F~~visk~I~~LV   84 (345)
                      +..|++.|...-..- .+.+-....|++||--+|....++.|.+.+. +.+++...+  -+++-+.....++......+.
T Consensus        95 ~~~Y~~~l~~~~~~~-~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~  171 (341)
T 3swh_A           95 LLQYADIVSKDFASY-CSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASG--TLKELQVKLNNVLDELSHVFA  171 (341)
T ss_dssp             HHHHHHHHHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh-hhhhcccchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            456777765221111 1222135699999999999999998887662 111211111  123334455555555555555


Q ss_pred             HHHhhhchHHhhcccC-------------CCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHH
Q 019132           85 LGLETKFDNEMAGMTR-------------VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLG  151 (345)
Q Consensus        85 ~~le~~le~a~~~m~~-------------~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi  151 (345)
                      ..+..+++...+.|..             ..|+..  -.+-+.-+.-+...|.+....+...+.+..|..+...+-..++
T Consensus       172 ~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~--~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l  249 (341)
T 3swh_A          172 TSFQPHIEECVRQMGDILSQVKGTGNVPASACSSV--AQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVM  249 (341)
T ss_dssp             HHTHHHHHHHHHHHHHHHHTCC-----------CH--HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCCccccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666541             123211  1123556777888899999999999999999999999999999


Q ss_pred             HHHHHHhH-------------h--ccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHH--hHHHHHHHh
Q 019132          152 PRFYANIF-------------K--CKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSR--EMSKAEALL  214 (345)
Q Consensus       152 ~~f~~~I~-------------k--~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~K~V~~--~~~klE~lL  214 (345)
                      ..+...|.             +  -|++++--.+.|..+.+.|+.+|+.    +++. .|   ...+.+  +...++.+|
T Consensus       250 ~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA----~G~G-L~---~~~Leks~~~~~l~~~L  321 (341)
T 3swh_A          250 NTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHA----GGVG-LK---KTFLEKSPDLQSLRYAL  321 (341)
T ss_dssp             HHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHG----GGTS-CC---HHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhcc----CCCC-CC---HHHHccChhHHHHHHHH
Confidence            98888761             1  3566777788899999999999964    1222 12   355544  588999999


Q ss_pred             HHhcCCchhHHHHHHh
Q 019132          215 KVILSPVDSVADTYRA  230 (345)
Q Consensus       215 KvL~sP~e~~ve~Y~~  230 (345)
                      .+-..+.+.+++.|..
T Consensus       322 ~L~~~~T~~LI~~f~~  337 (341)
T 3swh_A          322 SLYTQATDLLIKTFVQ  337 (341)
T ss_dssp             HHC-------------
T ss_pred             HHhcCCHHHHHHHHHh
Confidence            9999998888888853

>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A

Probab=96.95  E-value=0.022  Score=48.75  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=104.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCccCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHH
Q 019132           65 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLD  144 (345)
Q Consensus        65 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcD  144 (345)
                      |+.....|.+-++.--.-||.++.......++     +|..-  ....|+||.+|++.+..--..+..+|++.=.+.+..
T Consensus        10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~   82 (141)
T 3n1e_A           10 FDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFL   82 (141)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            77777888888888888888888877776654     89752  346999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhccCCChhhHhh--HHhhHHHHHHHHhhCCCCCC
Q 019132          145 KLASSLGPRFYANIFKCKHISETGAQQ--MLLDTQAVKTILLDIPSLGR  191 (345)
Q Consensus       145 Klv~~fi~~f~~~I~k~kpis~~gaeQ--LLLD~~sLK~~Ll~LP~~~~  191 (345)
                      ++-.+|-.++-.++-++..-++.|.+.  ++-|+.-..+.|-+|+..+.
T Consensus        83 ~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d  131 (141)
T 3n1e_A           83 RINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD  131 (141)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCCc
Confidence            999999999999999998888888887  78999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00