Citrus Sinensis ID: 019146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MHRSSPKFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN
Secondary Structure (PSIPRED)
ccccccHHHHHHHccEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHccccEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHEEEEHHHHHccccccEEEEEEEcccccccccccccccccccccccccHcccccHHHHHHccccccHccHHHHHHHHcccHHcccHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHHccEEEEccEEEccccccccccccccccccEEccccccccccEEEEEcccccccccHcccccccccHHHHHHHHHHHHcccccEEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mhrsspkfLREEFASCVSLivqpsynkcrssyRIGVLVadcsnsrtycthnllepgsvkhssniqvfsdssksfssyignspsflsgeshsILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVyrdksrdddwlaaspdglvdrfvydlpsggvleikcpffngeltraspwkriplyyipqaQGLMEILDrdwmdfyvwtpngsslfRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYvisdplkqlkplkptprhelwSYLVYdskriidnSSLLVREIGGKLQN
Flexible Loop (DISEMBL)
mhrsspkflREEFASCVSlivqpsynkcrssYRIGVLVADCSNSRTYCTHNLlepgsvkhssnIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTAStfagaigfwPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPlkqlkplkptprHELWSYLVYDSKRIIDNSSLLVREIGGKLQN
Low Complexity Region (SEG)
MHRSSPKFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVfsdssksfssYIGNSPSFLSGEshsilqssslqhWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDplkqlkplkpTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN
Disordered region (IsUnstruct)
********LREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLE******************************************SLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREI******
Disordered Region (DISOPRED)
******K**REEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRT*************************KS******************************NWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVIS********LKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGK***
Disordered Region (DISEMBL)
MHRSSPKFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN
Disordered Region (DISPRO)
******KFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHRSSPKFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
255566110	317	conserved hypothetical protein [Ricinus	0.907	0.987	0.686	1e-126
225454973	350	PREDICTED: uncharacterized protein LOC10	0.881	0.868	0.703	1e-124
449529263	302	PREDICTED: uncharacterized protein LOC10	0.797	0.910	0.727	1e-121
449443974	302	PREDICTED: uncharacterized protein LOC10	0.797	0.910	0.727	1e-121
449464404	294	PREDICTED: uncharacterized protein LOC10	0.797	0.935	0.738	1e-120
224109762	349	predicted protein [Populus trichocarpa]	0.947	0.936	0.634	1e-117
357453519	344	hypothetical protein MTR_2g088950 [Medic	0.907	0.909	0.644	1e-115
356551775	720	PREDICTED: uncharacterized protein LOC10	0.892	0.427	0.645	1e-113
356498860	668	PREDICTED: uncharacterized protein LOC10	0.768	0.396	0.714	1e-108
359489953	312	PREDICTED: uncharacterized protein LOC10	0.675	0.746	0.781	1e-107

>gi|255566110|ref|XP_002524043.1| conserved hypothetical protein [Ricinus communis] gi|223536770|gb|EEF38411.1| conserved hypothetical protein [Ricinus communis]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/313 (68%), Positives = 256/313 (81%)

Query: 33  RIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSI 92
           R+       SN R Y + +++ P S   S+N ++    SK +SS+      F +GE+ SI
Sbjct: 5   RLAAFKIKLSNIRRYSSQSIVYPTSKNFSANTEICDIFSKRYSSHSCRPLEFPTGETSSI 64

Query: 93  LQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWS 152
           LQS +LQHWFKNWQ+ RKHKLTASTF GAIGFW  RRVQLWLEK+GAI+PF GNLATCWS
Sbjct: 65  LQSRALQHWFKNWQEQRKHKLTASTFGGAIGFWHGRRVQLWLEKLGAIKPFSGNLATCWS 124

Query: 153 NIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEI 212
           NIKEE+ALERYKLITGNTV F +FQVY  K+ +DDWLAASPDG++D  VY LPS GVLEI
Sbjct: 125 NIKEEEALERYKLITGNTVIFPKFQVYGVKNSEDDWLAASPDGVIDSLVYGLPSRGVLEI 184

Query: 213 KCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYW 272
           KCPFF+G++++ASPWKRIPLYYIPQAQGLMEIL+RDWMDFYVWTP GSSLFR+YRD++YW
Sbjct: 185 KCPFFDGDMSKASPWKRIPLYYIPQAQGLMEILNRDWMDFYVWTPVGSSLFRIYRDVQYW 244

Query: 273 DVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNS 332
           D +KMALSDFWWKHVQPARE+CSK VI+DP  QL+  KP PRHEL S+LVY+SKR++D+S
Sbjct: 245 DTVKMALSDFWWKHVQPAREICSKSVITDPCTQLRLFKPAPRHELCSHLVYESKRVVDHS 304

Query: 333 SLLVREIGGKLQN 345
            LL+REI G LQN
Sbjct: 305 KLLLREIHGHLQN 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454973|ref|XP_002277891.1| PREDICTED: uncharacterized protein LOC100256226 [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/304 (70%), Positives = 249/304 (81%)

Query: 42  SNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHW 101
           S  R Y + N LEP   + +SN Q  S SS+       +SP+ LSGE++S+LQSS  QHW
Sbjct: 47  SELRNYHSQNFLEPRYKELTSNSQFCSHSSRKVPVCFDHSPNLLSGETYSVLQSSGFQHW 106

Query: 102 FKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALE 161
           FKNWQ+ RKHKLTASTF GA+GFWPRRRVQLWLEK+GA +PF GNLATCWSNIKEE+ALE
Sbjct: 107 FKNWQEQRKHKLTASTFGGAVGFWPRRRVQLWLEKLGATKPFSGNLATCWSNIKEEEALE 166

Query: 162 RYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGEL 221
           RYKLITGNTV F EFQVY  K  +D+WLAASPDG+VD  VY L S GVLEIKCPFFNG+ 
Sbjct: 167 RYKLITGNTVLFPEFQVYGKKDPEDNWLAASPDGIVDSLVYGLHSRGVLEIKCPFFNGDK 226

Query: 222 TRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSD 281
           + ASPW R+PLYYIPQAQGLMEI+DRDWMDFYVWT NGSSLFR+YRD EYWDV+K+ALSD
Sbjct: 227 SIASPWSRVPLYYIPQAQGLMEIMDRDWMDFYVWTLNGSSLFRLYRDAEYWDVLKIALSD 286

Query: 282 FWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGG 341
           FW+KHV PARE+C K+ I+ PL +L+ LKP PRHEL  Y+VY+SKRI+D+S LL+REI G
Sbjct: 287 FWFKHVLPARELCRKHAINSPLTELRSLKPEPRHELCRYIVYESKRIVDDSKLLMREIHG 346

Query: 342 KLQN 345
           KLQN
Sbjct: 347 KLQN 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529263|ref|XP_004171620.1| PREDICTED: uncharacterized protein LOC101230316 [Cucumis sativus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/275 (72%), Positives = 241/275 (87%)

Query: 70  SSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRR 129
           S ++F+S   +S  F +   +S+LQS+S QHWFKNWQ+LRKHKLTASTFAGAIGFWPRRR
Sbjct: 27  SIRNFNSVSSSSLQFETVNHYSVLQSTSFQHWFKNWQELRKHKLTASTFAGAIGFWPRRR 86

Query: 130 VQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWL 189
           VQLWLEK+GAI+ F GNLATCWSN+KEE+ALERYKLITGN+V F EFQVY   + +DDWL
Sbjct: 87  VQLWLEKLGAIDQFCGNLATCWSNMKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWL 146

Query: 190 AASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDW 249
           AASPDG +D+ +Y LPS GVLEIKCPFFNG++  ASPW R+PLY IPQAQGLMEI+DRDW
Sbjct: 147 AASPDGAIDKMIYGLPSQGVLEIKCPFFNGDMRNASPWSRVPLYCIPQAQGLMEIMDRDW 206

Query: 250 MDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPL 309
           MDFYVWTPNGSSLFR+YRD+EYWDV+K+ALSDFWWKHVQPAREMCSKYV+++PL +LK L
Sbjct: 207 MDFYVWTPNGSSLFRLYRDVEYWDVLKIALSDFWWKHVQPAREMCSKYVVTNPLVELKSL 266

Query: 310 KPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQ 344
           +P+PRHEL SY+V +S+R+++NS LL+RE  G+LQ
Sbjct: 267 RPSPRHELCSYIVCESRRVVNNSKLLLREFDGRLQ 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443974|ref|XP_004139750.1| PREDICTED: uncharacterized protein LOC101213269 [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 200/275 (72%), Positives = 240/275 (87%)

Query: 70  SSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRR 129
           S ++F+S   +S  F +   +S+LQS+S QHWFKNWQ+LRKHKLTASTFAGAIGFWPRRR
Sbjct: 27  SIRNFNSVSSSSLQFETVNHYSVLQSTSFQHWFKNWQELRKHKLTASTFAGAIGFWPRRR 86

Query: 130 VQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWL 189
            QLWLEK+GAI+ F GNLATCWSN+KEE+ALERYKLITGN+V F EFQVY   + +DDWL
Sbjct: 87  TQLWLEKLGAIDQFCGNLATCWSNMKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWL 146

Query: 190 AASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDW 249
           AASPDG +D+ VY LPS GVLEIKCPFFNG++  ASPW R+PLY IPQAQGLMEI+DRDW
Sbjct: 147 AASPDGAIDKMVYGLPSRGVLEIKCPFFNGDMRNASPWSRVPLYCIPQAQGLMEIMDRDW 206

Query: 250 MDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPL 309
           MDFYVWTPNGSSLFR+YRD+EYWDV+K+ALSDFWWKHVQPAREMCSKYV+++PL +LK L
Sbjct: 207 MDFYVWTPNGSSLFRLYRDVEYWDVLKIALSDFWWKHVQPAREMCSKYVVTNPLIELKSL 266

Query: 310 KPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQ 344
           +P+PRHEL SY+V +S+R+++NS LL+RE  G+LQ
Sbjct: 267 RPSPRHELCSYIVCESRRVVNNSKLLLREFDGRLQ 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464404|ref|XP_004149919.1| PREDICTED: uncharacterized protein LOC101207616 [Cucumis sativus] gi|449490501|ref|XP_004158623.1| PREDICTED: uncharacterized LOC101207616 [Cucumis sativus]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/275 (73%), Positives = 238/275 (86%)

Query: 70  SSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRR 129
           S ++F+S   +S  F +G  +S+LQSSS QHWFKNWQ+LRKHKLTASTFAGAIGFWPRRR
Sbjct: 19  SLRNFNSVSFSSLQFETGNHYSVLQSSSFQHWFKNWQELRKHKLTASTFAGAIGFWPRRR 78

Query: 130 VQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWL 189
            QLWLEK+GAI+ F GNLATCWSN+KEE+ALERYKLITGN+V F EFQVY   + +DDWL
Sbjct: 79  TQLWLEKLGAIDQFCGNLATCWSNMKEEEALERYKLITGNSVLFPEFQVYGKANSEDDWL 138

Query: 190 AASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDW 249
           AASPDG +D+ VY LPS GVLEIKCPFFNG+L  A PW R+P Y IPQAQGLMEI+DRDW
Sbjct: 139 AASPDGAIDKMVYGLPSRGVLEIKCPFFNGDLRNALPWSRVPRYCIPQAQGLMEIMDRDW 198

Query: 250 MDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPL 309
           MDFYVWTPNGSSLFR+YRD EYWDV+K+ALSDFWWKHVQPAREMCSKYVI++PL +LK L
Sbjct: 199 MDFYVWTPNGSSLFRLYRDPEYWDVLKIALSDFWWKHVQPAREMCSKYVITNPLVELKSL 258

Query: 310 KPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQ 344
           +P+PRHEL SY+V +SKR+++NS LL+RE  G+LQ
Sbjct: 259 RPSPRHELCSYIVCESKRVVNNSKLLLREFDGRLQ 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109762|ref|XP_002315303.1| predicted protein [Populus trichocarpa] gi|222864343|gb|EEF01474.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/342 (63%), Positives = 254/342 (74%), Gaps = 15/342 (4%)

Query: 8   FLR----EEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSN 63
           FLR    EEF SC  +  + SY   + +  IG    D SN R Y +  LL+P   +   N
Sbjct: 19  FLRQIPNEEFVSCFLINFRLSYYNSKYNCDIGPFKVDISNRRNYSSQVLLDPLGEEQPVN 78

Query: 64  IQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIG 123
            Q+++ S    SS    SP        SILQSSSLQH FK WQ  RKHKLTASTF+GAIG
Sbjct: 79  SQIYNHSCTRDSS----SPYI------SILQSSSLQHRFKKWQDQRKHKLTASTFSGAIG 128

Query: 124 FWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKS 183
           FW  RRVQLWLEK+GA EPF GN+ATCWSN KEE+ALERYKLITGNT+ F  FQVY   +
Sbjct: 129 FWRGRRVQLWLEKLGAKEPFSGNMATCWSNAKEEEALERYKLITGNTILFPRFQVYGKNN 188

Query: 184 RDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLME 243
             DDWLAASPDG++D++ Y L S GVLEIKCPFFNG++ RASPWKRIPLY IPQAQGLME
Sbjct: 189 LKDDWLAASPDGIIDKY-YGLNSRGVLEIKCPFFNGDMKRASPWKRIPLYCIPQAQGLME 247

Query: 244 ILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPL 303
           ILD+DWMDFYVWTPNGSSLFR+YRD  YWD +K+ALSDFW+ HV PA+E+CSK VI+DPL
Sbjct: 248 ILDKDWMDFYVWTPNGSSLFRLYRDEAYWDALKIALSDFWFNHVLPAKELCSKNVITDPL 307

Query: 304 KQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN 345
           K+L  LKP PRHEL+ Y+VY+SK  +D+S LL+REI G LQN
Sbjct: 308 KELGSLKPAPRHELYRYIVYESKHAVDSSHLLMREINGHLQN 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453519|ref|XP_003597037.1| hypothetical protein MTR_2g088950 [Medicago truncatula] gi|355486085|gb|AES67288.1| hypothetical protein MTR_2g088950 [Medicago truncatula]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/326 (64%), Positives = 248/326 (76%), Gaps = 13/326 (3%)

Query: 20  IVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSSNIQVFSDSSKSFSSYIG 79
           + +  + K  SSY  G LVA  SN R + ++      +  H+ +     + SK F +  G
Sbjct: 32  VARVQHFKHGSSYYKGALVACLSNKRIFSSN------ASSHAPD-----NPSKRFGNG-G 79

Query: 80  NSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGA 139
               F S E+HS+L++  LQHWFKNWQ LRK KLTASTFA AIGFW +RR QLWLEKIGA
Sbjct: 80  GMLKFTSEETHSVLEAPCLQHWFKNWQTLRKQKLTASTFAAAIGFWHKRRSQLWLEKIGA 139

Query: 140 IEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDR 199
           IEPF GNLATCWSNIKEE+ALERYKLIT NTV F+EFQVY D   +D WLAASPDG++DR
Sbjct: 140 IEPFSGNLATCWSNIKEEEALERYKLITENTVLFSEFQVY-DSKPEDSWLAASPDGIIDR 198

Query: 200 FVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNG 259
            VYDLPS GVLE+KCP+F G++++A PW RIP++YIPQAQGLMEIL RDWMDFYVWT NG
Sbjct: 199 MVYDLPSRGVLEVKCPYFGGDMSKALPWYRIPVHYIPQAQGLMEILGRDWMDFYVWTVNG 258

Query: 260 SSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWS 319
           SSLFR+YRD EYWDVMK+ALSDFWWKHVQPARE  S  VI DPL QL+ L P P+HEL  
Sbjct: 259 SSLFRIYRDPEYWDVMKIALSDFWWKHVQPARESYSSSVIKDPLFQLRSLTPAPKHELCR 318

Query: 320 YLVYDSKRIIDNSSLLVREIGGKLQN 345
            +VY SK I+DNS+LL+REI GK+ N
Sbjct: 319 DIVYRSKHIVDNSNLLIREIHGKMTN 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551775|ref|XP_003544249.1| PREDICTED: uncharacterized protein LOC100786030 [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/319 (64%), Positives = 248/319 (77%), Gaps = 11/319 (3%)

Query: 29  RSSYRIGVLVADCSNSRTYCTHN----LLEPGSVKHSSNIQVFSDSSKSFSSYIGNSPSF 84
           +SS  +  LVA  SN R + ++     + EP +    SN     + S+   S +G    +
Sbjct: 30  QSSCYVDALVACLSNKRNFSSNASELVIREPKTNSCGSN-----NPSRKLGS-LGGMLKY 83

Query: 85  LSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFL 144
            S E++S+LQ+S LQHWFKNWQ LR++KLTASTFA AIGFW R+RVQLWLEKIGAIEPF 
Sbjct: 84  TSVETYSVLQASCLQHWFKNWQALRRNKLTASTFAAAIGFWRRQRVQLWLEKIGAIEPFS 143

Query: 145 GNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDL 204
           GNLATCWSNIKEEDALERYKLITGNTV F EFQVY D   +D WLAASPDG++D  V++L
Sbjct: 144 GNLATCWSNIKEEDALERYKLITGNTVLFPEFQVY-DAHPEDSWLAASPDGVIDSMVHEL 202

Query: 205 PSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFR 264
           PS GVLEIKCP+F+G++++A PW RIP++YIPQAQGLMEIL+RDWMDFYVWTPNGSSLFR
Sbjct: 203 PSCGVLEIKCPYFDGDISKAFPWFRIPIHYIPQAQGLMEILERDWMDFYVWTPNGSSLFR 262

Query: 265 VYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYD 324
           +YRD EYWD+MK+ALSDFWWKHV PARE+ S  VI+ PL QL+ ++P PRHEL   +VY 
Sbjct: 263 IYRDAEYWDLMKIALSDFWWKHVHPARELYSSNVITHPLFQLRSMRPAPRHELCRDIVYK 322

Query: 325 SKRIIDNSSLLVREIGGKL 343
           SK I  NS LL+REI GKL
Sbjct: 323 SKHIAANSKLLMREIHGKL 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498860|ref|XP_003518266.1| PREDICTED: uncharacterized protein LOC100775211 [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/266 (71%), Positives = 221/266 (83%), Gaps = 1/266 (0%)

Query: 78  IGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKI 137
           +G    + S E++S+LQ+S LQHWFKNWQ LR++KLTASTFA AIGFW R+RVQLWLEKI
Sbjct: 25  LGGMLKYTSVETYSVLQASCLQHWFKNWQALRRNKLTASTFAAAIGFWHRQRVQLWLEKI 84

Query: 138 GAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLV 197
           GAIEPF GNLATCWSNIKEEDALERYKLITGNTV F EFQVY D   +D WLAASPDG++
Sbjct: 85  GAIEPFSGNLATCWSNIKEEDALERYKLITGNTVRFPEFQVY-DAHPEDSWLAASPDGVI 143

Query: 198 DRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTP 257
           D  V++LPS GVLEIKCP+F+G++++A PW RIP+ YIPQ QGLMEIL RDWMDFYVWTP
Sbjct: 144 DSMVHELPSCGVLEIKCPYFDGDISKAFPWFRIPILYIPQTQGLMEILGRDWMDFYVWTP 203

Query: 258 NGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHEL 317
           N SSLFR+YRD EYWD+MK+ALSDFWWKHV PARE+ S  VI+ PL QL+ ++P PRHEL
Sbjct: 204 NVSSLFRIYRDAEYWDLMKIALSDFWWKHVYPARELYSSNVITHPLFQLRSMRPAPRHEL 263

Query: 318 WSYLVYDSKRIIDNSSLLVREIGGKL 343
              +VY SK I  NS LL+REI GKL
Sbjct: 264 CRDIVYKSKHIAANSKLLMREIHGKL 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489953|ref|XP_002268652.2| PREDICTED: uncharacterized protein LOC100258006 [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/233 (78%), Positives = 211/233 (90%)

Query: 100 HWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDA 159
           HWFKNWQ+ RKHKLTASTF GA+GFWPRRRVQLWLEK+GAI+PF GNLATCWSNIKEE+A
Sbjct: 79  HWFKNWQEQRKHKLTASTFGGAVGFWPRRRVQLWLEKLGAIKPFSGNLATCWSNIKEEEA 138

Query: 160 LERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNG 219
           LERYKLITGNTV F EFQVY  K+ +D+WLAASPDG+V+R VY L S GVLEIKCPFFNG
Sbjct: 139 LERYKLITGNTVLFPEFQVYGKKNPEDNWLAASPDGVVERLVYGLHSRGVLEIKCPFFNG 198

Query: 220 ELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMAL 279
           + + ASPW R+PLY IPQAQGLMEI+DRDWMDFYVWT NGSSLFR+YRD+EYWDV+K+AL
Sbjct: 199 DKSIASPWSRVPLYCIPQAQGLMEIMDRDWMDFYVWTLNGSSLFRLYRDVEYWDVLKIAL 258

Query: 280 SDFWWKHVQPAREMCSKYVISDPLKQLKPLKPTPRHELWSYLVYDSKRIIDNS 332
           SDFW+KHVQPARE+CS++VI++PL +L+ LKP PRHEL  Y+VY+SKRI+DNS
Sbjct: 259 SDFWFKHVQPARELCSEHVITNPLIELRSLKPEPRHELCRYIVYESKRIVDNS 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2014874	303	AT1G13810 [Arabidopsis thalian	0.704	0.801	0.491	1.7e-59
TAIR|locus:2824070	355	AT1G67660 [Arabidopsis thalian	0.666	0.647	0.380	6.6e-42
DICTYBASE|DDB_G0269080	192	DDB_G0269080 [Dictyostelium di	0.437	0.786	0.289	3.4e-05

TAIR|locus:2014874 AT1G13810 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 120/244 (49%), Positives = 158/244 (64%)

Query:   101 WFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDAL 160
             W KNW+ LRK++LTAS FA AIGF P  R  LWLEKIGA +PF GN AT W    E +AL
Sbjct:    58 WRKNWEDLRKNRLTASNFARAIGFSPDGRRNLWLEKIGAAKPFAGNRATFWDIENEVEAL 117

Query:   161 ERYKLITGNTVYFTEFQVYRD-KSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNG 219
             ERY  +TGN +   EF VY++ +S +++WL ASPDG+++     + S GVLE+KCPF N 
Sbjct:   118 ERYNELTGNEILIPEFVVYKNGESPEENWLGASPDGVINVVKDGVTSCGVLEVKCPFDNR 177

Query:   220 ELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMAL 279
             + ++  PWK++P   +PQ QGLMEI+D DW+D Y WT NGSSLFRV+RD  +W+ MK AL
Sbjct:   178 DNSKVYPWKKVPYNCVPQLQGLMEIVDTDWLDLYCWTRNGSSLFRVWRDTAFWEDMKPAL 237

Query:   280 SDFWWKHVQPAREMCSKYVISDXXXXXXXXXXTPRHELWSYLVYDSKRIIDNSSLLVREI 339
              DFW  HV PARE+ + + I D             HE    ++  ++RI  N++ L  EI
Sbjct:   238 FDFWQNHVLPAREIYNNFDIKDPQVKLREFKPKHWHEDCKKIMRGAERISANANRLFYEI 297

Query:   340 GGKL 343
              G L
Sbjct:   298 DGNL 301

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2824070 AT1G67660 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 94/247 (38%), Positives = 133/247 (53%)

Query:   103 KNWQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKI----GAIEPFLGNLATCWSNIKEE 157
             + W  LRK KLT STF+ A+GFW   RR +LW EK+      +       A  W    E 
Sbjct:   119 EEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMES 178

Query:   158 DALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217
              A+ERYK I G  V    F ++ ++  +  WL ASPDG++D F       G+LE+KCP+ 
Sbjct:   179 SAIERYKRIMGCEVGTMGFAIHSNE--EFHWLGASPDGILDCF-------GILEVKCPYN 229

Query:   218 NGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKM 277
              G+     PWK++P YY+PQ QG MEI+DR+W++ Y WT NGS++FRV RD  YW ++  
Sbjct:   230 KGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHD 289

Query:   278 ALSDFWWKHVQPAREMCSKYVISDXXXXXXXXXXTPRHELWSYLVYDSKRIIDNSSLLVR 337
              L +FWW+ V PARE     ++            T  H+     +  S  +   S L+ R
Sbjct:   290 VLREFWWESVIPAREAL---LLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCR 346

Query:   338 EIGGKLQ 344
             EI   ++
Sbjct:   347 EIADHVE 353

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0269080 DDB_G0269080 [Dictyostelium discoideum (taxid:44689)]

 Score = 118 (46.6 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 50/173 (28%), Positives = 71/173 (41%)

Query:   103 KNWQKLR-KHKLTASTFAGAIGFWP---RRRVQLWLEKIGAIEPFLGNLAT-CWSNIKEE 157
             K W++ R K+ LT S  A AIG  P   +  ++L L K     PF  +       + K +
Sbjct:    22 KKWEEAREKYSLTGSRLAAAIGIDPYTSQHDLKLILAKKKT--PFFSDYCKKAMEHGKHQ 79

Query:   158 DALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFV--YD--LPSGGVLEIK 213
             + + R            E  ++      D  +  SPDG++   V   D  L   GV+EIK
Sbjct:    80 EPIAREFYFNELETSIIEKGIF--PLPGDKRIGCSPDGVIYTTVPGKDGVLQREGVIEIK 137

Query:   214 CPF----FNGELTRASP-----WKRIPLYYIPQAQGLMEILDRDWMDFYVWTP 257
             CP     F+G      P      ++IPL YIPQ    M      W D+  W P
Sbjct:   138 CPLSTTNFSGLKNGRKPDALANAQKIPLDYIPQIFANMACTGAQWCDYICWVP 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      345       313   0.00081  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  265 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.94u 0.12s 21.06t   Elapsed:  00:00:01
  Total cpu time:  20.94u 0.12s 21.06t   Elapsed:  00:00:01
  Start:  Fri May 10 23:29:45 2013   End:  Fri May 10 23:29:46 2013

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014181001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (323 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
pfam09588	140	pfam09588, YqaJ, YqaJ-like viral recombinase domai	2e-27
TIGR03033	153	TIGR03033, phage_rel_nuc, putative phage-type endo	2e-16

>gnl|CDD|220301 pfam09588, YqaJ, YqaJ-like viral recombinase domain

 Score =  104 bits (261), Expect = 2e-27
 Identities = 50/148 (33%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 105 WQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKIG----AIEPFLGNLATCWSNIKEEDA 159
           W   RK  +TAS  A  +G  P +  ++LWLEK G        F  N A  W +  E  A
Sbjct: 2   WLAARKGGITASDAAAILGLSPYKTPLELWLEKTGRRIPGDLKFSENEAMAWGHELEPLA 61

Query: 160 LERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNG 219
              Y+  TG+ V      + +    +D +L ASPDGLV          G+LEIK PF   
Sbjct: 62  RAEYEERTGDKVR-EVGGLLQ--HPEDPFLGASPDGLVVD-----GDLGILEIKTPF--E 111

Query: 220 ELTRASPWKR---IPLYYIPQAQGLMEI 244
            L  A  W     IP YY+ Q Q  + +
Sbjct: 112 TLFVAHVWGGADEIPDYYLAQVQHQLAV 139

This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit. Length = 140

>gnl|CDD|200235 TIGR03033, phage_rel_nuc, putative phage-type endonuclease

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 45/155 (29%), Positives = 62/155 (40%), Gaps = 13/155 (8%)

Query: 105 WQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERY 163
           W   RK  +TAS  A  +G  P +   +LW EK G +EP   N A       E +A E +
Sbjct: 9   WHAWRKGGITASDIAAIMGLNPYKTPEELWKEKTGFVEPEDMNEAMYHGVKLEPEAREAF 68

Query: 164 KLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTR 223
           +      +    F +  D+     W+AAS DGLV           +LEIKCP        
Sbjct: 69  R--DKYGIMAEPFCLEHDEYP---WMAASLDGLV------ADDKQILEIKCPSERVSKLW 117

Query: 224 ASPWK-RIPLYYIPQAQGLMEILDRDWMDFYVWTP 257
            S     +P YY  Q Q  + +       F V+  
Sbjct: 118 VSELSGEVPAYYQAQVQWQLYVSGSQAAYFAVYLG 152

Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
TIGR03033	153	phage_rel_nuc putative phage-type endonuclease. Me	100.0
PF09588	152	YqaJ: YqaJ-like viral recombinase domain; InterPro	100.0
COG5377	319	Phage-related protein, predicted endonuclease [DNA	99.95
PF01771	465	Herpes_alk_exo: Herpesvirus alkaline exonuclease;	99.66
PHA03293	523	deoxyribonuclease; Provisional	99.17
TIGR00372	178	cas4 CRISPR-associated protein Cas4. This model re	94.95
PF01930	162	Cas_Cas4: Domain of unknown function DUF83; InterP	94.91
PHA00619	201	CRISPR-associated Cas4-like protein	92.98

>TIGR03033 phage_rel_nuc putative phage-type endonuclease

Probab=100.00  E-value=1.9e-39  Score=283.29  Aligned_cols=150  Identities=29%  Similarity=0.343  Sum_probs=126.7

Q ss_pred             cccCCCHHHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeec
Q 019146           97 SLQHWFKNWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTE  175 (345)
Q Consensus        97 ~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G  175 (345)
                      +++|+|++|+++|+++||||++++++|.++| ++.+||.+|+|...++..|++|+||+.+||.|++.|+..++. +..++
T Consensus         1 ~~~Q~s~eWl~~R~~~ItaS~~~~i~g~s~~~t~~~L~~ek~g~~~~~~~~~~~~~G~~~Ep~a~~~~~~~~~~-~~~~~   79 (153)
T TIGR03033         1 DLVQRTEEWHAWRKGGITASDIAAIMGLNPYKTPEELWKEKTGFVEPEDMNEAMYHGVKLEPEAREAFRDKYGI-MAEPF   79 (153)
T ss_pred             CcccCHHHHHHHHhcCCCHhHHHHHHCCCccCCHHHHHHHHhCCCCCccccHHHHHhHhhhHHHHHHHHhcCCe-EEeCc
Confidence            3789999999999999999999999999999 999999999998776667999999999999999987766554 34556


Q ss_pred             eEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCccccc-CCCCCCCcccHHHHHHHhhhhcCCceeEEE
Q 019146          176 FQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRA-SPWKRIPLYYIPQAQGLMEILDRDWMDFYV  254 (345)
Q Consensus       176 ~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~-~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv  254 (345)
                      ++.    ++++|||+|||||++.+      +.++||||||+........ ..-+.+|.+|++|||+||+|+|+++|||++
T Consensus        80 ~~~----~~~~~~~~aSpDg~~~~------~~~ilEiK~~~~~~~~~w~~~~~~~iP~~Y~~QvQ~ql~vtg~~~~~f~~  149 (153)
T TIGR03033        80 CLE----HDEYPWMAASLDGLVAD------DKQILEIKCPSERVSKLWVSELSGEVPAYYQAQVQWQLYVSGSQAAYFAV  149 (153)
T ss_pred             EEe----cCCCCeEEECCceeecC------CCceEEEecCCcccchhhhhhccCCCcHHHHHHHHHHHhccCCCeEEEEE
Confidence            554    67899999999999852      6799999999865321100 011479999999999999999999999999


Q ss_pred             EeC
Q 019146          255 WTP  257 (345)
Q Consensus       255 ~~~  257 (345)
                      |.+
T Consensus       150 ~~~  152 (153)
T TIGR03033       150 YIG  152 (153)
T ss_pred             EeC
Confidence            986

Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.

>PF09588 YqaJ: YqaJ-like viral recombinase domain; InterPro: IPR019080 This protein is found in many different bacterial species but is of viral origin

Probab=100.00  E-value=1.6e-34  Score=250.25  Aligned_cols=140  Identities=36%  Similarity=0.543  Sum_probs=102.0

Q ss_pred             HHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcC------CCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeee-ec
Q 019146          104 NWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGA------IEPFLGNLATCWSNIKEEDALERYKLITGNTVYF-TE  175 (345)
Q Consensus       104 eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~------~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~-~G  175 (345)
                      ||+++|+++||||++++++|.+++ ++.+||.+|+|.      ..++.+|.+|+||+.+|+.|++.|++.+|..|.+ .|
T Consensus         1 eW~~~R~~~ItaS~~~~i~g~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~G~~~E~~a~~~~~~~~~~~v~~~~~   80 (152)
T PF09588_consen    1 EWLELRRGGITASEAAAILGISPYKTPFSLWREKLGERITEDLESPFSGNKAMQWGHELEPLARQFYEEKTGLEVKEPNG   80 (152)
T ss_dssp             HHHHHCTT-EEGGGHHHHH---SS-HHHHHHHHHHHHHHHSCH--S--SHHHHHHHHHHHHHHHHHHHHHHT--EE---S
T ss_pred             ChhHHHCCCcCHhHHHHHHCCCCCCCHHHHHHHHhCccccCCcCCcchhHHHHHHHHHhhHHHHHHHHHHhccceEecce
Confidence            799999999999999999999999 999999999976      3466789999999999999999999999999998 48


Q ss_pred             eEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccc---cCC-CCCCCcccHHHHHHHhhhhcCC
Q 019146          176 FQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTR---ASP-WKRIPLYYIPQAQGLMEILDRD  248 (345)
Q Consensus       176 ~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~---~~~-~~~iP~~Y~~QvQ~QM~Vtg~~  248 (345)
                      +++    ++++|||+|||||++.|...+ ...++||||||+.......   ... .+++|.+||+|||+||+|+|++
T Consensus        81 ~~~----~~~~~~l~aSpDg~~~~~~~~-~~~~~lEiK~~~~~~~~~~~~~~~~~~~~ip~~Y~~QvQ~qm~vtg~e  152 (152)
T PF09588_consen   81 LFI----HPDHPWLGASPDGLVVCPSGG-EERGLLEIKCPYSPKFISYKWGEAGESDKIPHYYYAQVQHQMAVTGAE  152 (152)
T ss_dssp             -EE----SSCTTSEEE--SEEE--GCTT--CTEEEEEEE-SHHHHHHHHHHCGG-HHCCHHHHHHHHHHHHHHHT-S
T ss_pred             eEE----cCccceeeecCCEEEeeccCC-CccceEEEecCCchhhhhhhhcccccccCCCHHHHHHHHHHHHHHCcC
Confidence            877    678999999999999853211 1389999999986322111   001 1379999999999999999985

The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit []. ; PDB: 3SZ5_A 3SZ4_A 3SYY_A 3K93_A 1AVQ_A 3SM4_C 3SLP_A.

>COG5377 Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]

Probab=99.95  E-value=7.3e-29  Score=227.38  Aligned_cols=179  Identities=25%  Similarity=0.303  Sum_probs=156.5

Q ss_pred             HHHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcCCCCC-CchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeec
Q 019146          103 KNWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGAIEPF-LGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYR  180 (345)
Q Consensus       103 ~eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~~~~~-~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~  180 (345)
                      .+|+..|+.+|+||+++.+||+++| +|++||++|.|..+|. +...+-.||..+|++++..|++.+|.+|..|..+.  
T Consensus        16 ~qWl~~R~~glggSDA~~imGln~ykt~fELwlekt~qv~p~~~qseaayfg~~~Eevva~eferrtGkkvrr~~~i~--   93 (319)
T COG5377          16 TQWLTHRRQGLGGSDAPIIMGLNKYKTPFELWLEKTGQVTPDESQSEAAYFGELLEEVVAKEFERRTGKKVRRCNAIL--   93 (319)
T ss_pred             HHHHHHHHhcCCCcchhhhhcCCccCCHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh--
Confidence            3999999999999999999999999 9999999999877665 45688999999999999999999999999998766  


Q ss_pred             cCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCC--CCCcccHHHHHHHhhhhc-CCceeEEEEeC
Q 019146          181 DKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWK--RIPLYYIPQAQGLMEILD-RDWMDFYVWTP  257 (345)
Q Consensus       181 ~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~--~iP~~Y~~QvQ~QM~Vtg-~~~~dfvv~~~  257 (345)
                       +||++.|++|+.|..+.    |  +..+||+||...+.    ...|.  ++|..|..|||||++|+| -..++|.|..+
T Consensus        94 -~hp~~~F~~anvdr~vV----g--E~aiLeckT~sA~m----~~ew~~~eiP~~Y~vQmqHyl~V~Ge~rk~y~Avlig  162 (319)
T COG5377          94 -RHPEYDFILANVDRDVV----G--EKAILECKTTSAYM----AKEWEDDEIPFHYIVQMQHYLGVLGEYRKAYFAVLIG  162 (319)
T ss_pred             -cCccchhhhhhhHHHhh----h--hhhhhccchHHHHH----hcccccccCcHHHHHHHHHHHhhhhhhhhhhheeeec
Confidence             59999999999999886    3  68899999965431    23454  899999999999999999 56678877544


Q ss_pred             -CCceEEEEeCCHHHHHHHHHHHHHHHHHhccCCcccc
Q 019146          258 -NGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMC  294 (345)
Q Consensus       258 -~~~~i~rV~RDe~~i~~i~~~~~eFw~~~V~p~~e~~  294 (345)
                       +.+.-.+|+||++.+..|+....+||.++|+-...|.
T Consensus       163 G~kfiwkeierddeLin~Ii~~e~~fw~d~v~~~~pPa  200 (319)
T COG5377         163 GNKFIWKEIERDDELINMIINAEIDFWNDIVLGPVPPA  200 (319)
T ss_pred             cchhHHHHhhhhHHHHHHHHHHHHHHHhhccccCCCCC
Confidence             6788889999999999999999999999988766664

>PF01771 Herpes_alk_exo: Herpesvirus alkaline exonuclease; InterPro: IPR001616 Equid herpesvirus 1 (Equine herpesvirus 1) is a respiratory virus capable of causing abortion and neurological disease

Probab=99.66  E-value=7.9e-17  Score=162.92  Aligned_cols=131  Identities=19%  Similarity=0.061  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHH
Q 019146           83 SFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALER  162 (345)
Q Consensus        83 ~it~~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~  162 (345)
                      ..+.+++..||+.|++|+.|+.|+.+|.+++|||.+...+.....++. + ....+.......+.+|.+|..+|+.|+..
T Consensus        89 ~~~~e~~~~IE~~TRGQS~N~LW~lLR~~riTAS~~~~~~~~~~~~~~-l-~~~~~~~~~~~~~~av~fG~~~E~~vk~l  166 (465)
T PF01771_consen   89 RRTREIILRIEKATRGQSENPLWHLLRLGRITASKFYWVCKGPNSSPA-L-FKGNPIQNNHYQSEAVAFGLRNEPVVKKL  166 (465)
T ss_dssp             HHHHHHHHHHHHCTTTGCCSCCHHHHCTTSEECCCHHHHHCT-CTTTG-C-CS-------SS--SHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHHHCCceeeccceeeccCCcCcHH-H-hccccccccccCcHHHHhchhhHHHHHHH
Confidence            345688999999999999999999999999999999999863222111 1 11101111123567999999999999999


Q ss_pred             HHHHhC-----CeeeeeceEeeccCCCCCCccccCCCCcccccccCC-------CCCceEEeeccCcCC
Q 019146          163 YKLITG-----NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDL-------PSGGVLEIKCPFFNG  219 (345)
Q Consensus       163 ye~~~g-----~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~-------~~~gilEIKcP~~~~  219 (345)
                      +++..-     ..|.+|||++    ++..+++|||||.++.....|+       ....++||||||++.
T Consensus       167 i~~~v~~~~~~~~v~~CGLfi----sp~~Gl~gASpD~~f~r~~~g~~~~~~~~~~~~vyEIKCr~KY~  231 (465)
T PF01771_consen  167 IEELVVKTRDSEEVLDCGLFI----SPRTGLFGASPDAYFCRDETGELGPLEFEPDIVVYEIKCRYKYL  231 (465)
T ss_dssp             HHHCTSS-TTSTCE-----EE-----TTTSSEEE--SEEEC-EEEECTTEEEEECCCEEEEEEEEGCC-
T ss_pred             HHHhhccccCCCcccceeeee----cCCCCccccchhheeeeccCCCCCccccCCceEEEEEecccccc
Confidence            888763     4799999999    7788999999999986111221       246679999999874

Its complete DNA sequence has been determined [] and the constituent genes found to be arranged co-linearly with those in the genomes of other alphaherpesviruses, namely Human herpesvirus 3 (HHV-3) and Human herpesvirus 1 (HHV-1) []. Comparisons of the predicted amino acid sequences have allowed functions of many EHV-1 proteins to be inferred. For example, detailed analysis of HHV-1 and Human herpesvirus 2 (HHV-2) DNA has revealed an open reading frame sufficient to encode 626 amino acids for the HHV-1 alkaline exonuclease (620 amino acids for HHV-2) []. Comparison of the predicted amino acid sequences of the viral enzymes has revealed significant differences in the N-terminal portions of the proteins; nevertheless, their three-dimensional structures are believed to be similar.; GO: 0003677 DNA binding, 0004527 exonuclease activity; PDB: 3FHD_A 3POV_A 2W45_B 2W4B_B.

>PHA03293 deoxyribonuclease; Provisional

Probab=99.17  E-value=6e-11  Score=120.53  Aligned_cols=125  Identities=22%  Similarity=0.117  Sum_probs=86.7

Q ss_pred             HHHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCC-CChHHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHH
Q 019146           86 SGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERY  163 (345)
Q Consensus        86 ~~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~-~s~~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~y  163 (345)
                      .+.+..||..|++|+.++.|+.+|.+++|||.+.-  |.+. ....+ |.+.- +. .....+.||.+|+.+|+.|+..+
T Consensus       121 ~~~~~~vE~~TRGQS~N~LW~lLR~~~iTAS~~~w--~~~g~~~~p~-~~~~~~~~-~~~~~s~Av~FG~~nE~~vK~Ll  196 (523)
T PHA03293        121 RDILLFVEAATRNQAECDLWALLRRGLLTASTLKW--GANGPCFPPQ-WCKVNTGA-RGIPQSAAVAFGRTNEPLARALI  196 (523)
T ss_pred             HHHHHHHHHHhhcCccCHHHHHHHcCCceecceec--cCCCCccCcc-cccccccc-cccccchHhhhchhhhHHHHHHH
Confidence            35788999999999999999999999999998763  1111 10001 11111 11 01124689999999999999988


Q ss_pred             HHHhC---------------------------CeeeeeceEeeccCCCCCCccccCCCCcccccc-cC-------CCCCc
Q 019146          164 KLITG---------------------------NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFV-YD-------LPSGG  208 (345)
Q Consensus       164 e~~~g---------------------------~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~-~g-------~~~~g  208 (345)
                      +...-                           .....||+++    ++..+.+|||.|-.+...- .|       .....
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~cGlLi----Dp~tG~~GASLDm~v~~rd~~G~L~~~~~~~~~~  272 (523)
T PHA03293        197 EAYCVGPSTDDGGTDPDDGEFFVFDEPVGSPPEEAYACGLLI----DARTGMVGASLDMLVCDRDPHGVLAPHPTQTTLE  272 (523)
T ss_pred             HHHccCCcccccccccccccceecccccCCCCCcceeeeeEe----cCCCCcccccCceEecccCCCCcccccCCCCcee
Confidence            87531                           1244689988    7888999999999873210 11       11366


Q ss_pred             eEEeeccCcC
Q 019146          209 VLEIKCPFFN  218 (345)
Q Consensus       209 ilEIKcP~~~  218 (345)
                      +.||||-+.+
T Consensus       273 iyEIKCRaKY  282 (523)
T PHA03293        273 FFEIKCRAKY  282 (523)
T ss_pred             EEEEeccccc
Confidence            8999998765

>TIGR00372 cas4 CRISPR-associated protein Cas4

Probab=94.95  E-value=0.71  Score=40.47  Aligned_cols=144  Identities=16%  Similarity=0.079  Sum_probs=82.8

Q ss_pred             ccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCC
Q 019146          114 TASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASP  193 (345)
Q Consensus       114 TAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASP  193 (345)
                      +.|.+...+=+    |...|.+..+..... .+..|.-|......+.+.. +..+....+-...+.   +..+ .+.+.+
T Consensus         2 ~~s~i~~~~~C----pR~~~~~~~~~~~~~-~~~~~~~G~~~h~~~~~~~-~~~~~~~~~~~v~l~---~~~~-~l~G~i   71 (178)
T TIGR00372         2 TVSDVLEYLYC----PRKLWYMKKGGSERF-SEVRMILGRLIHERAESFL-KSLGGVREEKEVPLK---SKKL-GLKGVI   71 (178)
T ss_pred             ChHHhHHHHhC----hHHHHHHHhhccccc-chhHHHHHHHHHHHhhhhh-hccCCEEEEEeeEeE---cccC-CcEEEE
Confidence            44444444333    667888887433322 3456999997765554332 222222223344443   3233 478899


Q ss_pred             CCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCce----eEEEEeCCCceEEEEeCCH
Q 019146          194 DGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWM----DFYVWTPNGSSLFRVYRDL  269 (345)
Q Consensus       194 DGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~----dfvv~~~~~~~i~rV~RDe  269 (345)
                      |.+...   + .+..++|+|+....       .    ...|..|++.|.++......    -+++|...+. ...|..|+
T Consensus        72 D~i~~~---~-~~~~ive~Ktg~~~-------~----~~~~~~Ql~~Ya~~l~~~~~~v~~g~l~y~~~~~-~~~v~~~~  135 (178)
T TIGR00372        72 DVVLEA---D-GELVPVEVKSGKPK-------L----REAHKYQLLAYAYLLEEMYGEIVRGYILYIEAGK-KLEVEISE  135 (178)
T ss_pred             EEEEEE---C-CeEEEEEEecCCCC-------C----ChhHHHHHHHHHHHHHHhhCCCCcEEEEEEeCCc-EEEecCCH
Confidence            988752   1 13458999996432       0    15788899999888754432    2334544443 44888898


Q ss_pred             HHHHHHHHHHHHHH
Q 019146          270 EYWDVMKMALSDFW  283 (345)
Q Consensus       270 ~~i~~i~~~~~eFw  283 (345)
                      +..+.+.+.+.+.-
T Consensus       136 ~~~~~~~~~~~~i~  149 (178)
T TIGR00372       136 ELRKKAEKLIEKIR  149 (178)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776666655543

This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.

>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins

Probab=94.91  E-value=0.45  Score=41.37  Aligned_cols=131  Identities=16%  Similarity=0.026  Sum_probs=79.7

Q ss_pred             ccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCC
Q 019146          114 TASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASP  193 (345)
Q Consensus       114 TAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASP  193 (345)
                      |+|++-..+=+    |..+|+...+.... ..+..|..|.....   ..|.+..      .++.+.     +    .+-+
T Consensus         1 t~s~v~~y~~C----pR~~~l~~~~~~~~-~~~~~~~~G~~~h~---~~~~~~~------~~v~vs-----~----~G~i   57 (162)
T PF01930_consen    1 TGSMVNEYVYC----PRRAYLERVGIEPE-EPTESMELGRELHE---ERYEREK------REVPVS-----E----SGKI   57 (162)
T ss_pred             CHHHhhHHHHc----cHHHHHHHcCCccc-CCHhHHHhhHHhhh---hhhhhcc------eeeccC-----C----cEEE
Confidence            44554444332    67889998865332 24568898987655   2233211      222221     1    7888


Q ss_pred             CCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhc---CCceeEEEEeCCCceEEEEeCCHH
Q 019146          194 DGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILD---RDWMDFYVWTPNGSSLFRVYRDLE  270 (345)
Q Consensus       194 DGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg---~~~~dfvv~~~~~~~i~rV~RDe~  270 (345)
                      |.+...    .....++|+|.....            ...+..|+..|+++..   .+.-.-+++...+-...+|+.|++
T Consensus        58 D~v~~~----~~~~~~~E~K~~~~~------------~~~~~~Ql~~Y~~lL~~~g~~v~~G~i~y~~~~~~~~v~~~~~  121 (162)
T PF01930_consen   58 DIVEKG----GGEIIPVEIKSGRKP------------REEHRMQLAAYALLLEEFGIPVKRGYIYYIEDRKRVRVEITEE  121 (162)
T ss_pred             EEEEEe----CCEEEEEEEecCCCC------------cchhHHHHHHHHHHHHhcCccceeEEEEEecCCeEEEEeCCHH
Confidence            888741    125678999976431            2345889999998876   222212344455666777999998


Q ss_pred             HHHHHHHHHHHHH
Q 019146          271 YWDVMKMALSDFW  283 (345)
Q Consensus       271 ~i~~i~~~~~eFw  283 (345)
                      ..+.+.+.+.++-
T Consensus       122 ~~~~v~~~i~~i~  134 (162)
T PF01930_consen  122 LRRKVEKLIEEIR  134 (162)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777777766

>PHA00619 CRISPR-associated Cas4-like protein

Probab=92.98  E-value=1.5  Score=40.10  Aligned_cols=154  Identities=8%  Similarity=-0.006  Sum_probs=81.2

Q ss_pred             hcCCcccchHHHhhcCCCCChHHHHHHHhcCC-C-CCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeec-eEeeccCCCC
Q 019146          109 RKHKLTASTFAGAIGFWPRRRVQLWLEKIGAI-E-PFLGNLATCWSNIKEEDALERYKLITGNTVYFTE-FQVYRDKSRD  185 (345)
Q Consensus       109 R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~-~-~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G-~~i~~~~~~~  185 (345)
                      |.+.|..|+++.+       +..+|....+.. + .......|.-|+..-....+...+ .+....... ..+      .
T Consensus        19 ~~~~i~~sd~~~C-------pRk~w~~~~~~~~~~~~~~~~~~~~G~~iHe~~~~~~~~-~sy~~e~~ve~~i------~   84 (201)
T PHA00619         19 DLQTIWVTELSRC-------LRRSWLMRKNGGVKLALEEAMKMHIGSGLHMRLQRILKK-HGFETECRVERKT------A   84 (201)
T ss_pred             CCCeEEeeehhcC-------ccHHHHHHhccccccccccchHHHhhHHHHHHHHHHHhh-cCceeEEEEEEec------c
Confidence            4567888886644       345788777432 2 122346779998765444444442 233322111 111      1


Q ss_pred             CCc-cccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEeCCCceEEE
Q 019146          186 DDW-LAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFR  264 (345)
Q Consensus       186 ~p~-lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~~~~~~i~r  264 (345)
                      .++ +.+..|.+..    +  +..|+|||+.....      ...+.-..|..|++.+|+..+...+.++.+..+ -.+..
T Consensus        85 ~~~~i~G~ID~i~~----~--~~~vvEiK~s~~~~------~~~~~~~~~~~QL~~Yl~lL~~~~G~l~~~~~~-rk~~e  151 (201)
T PHA00619         85 LGFEIVGKIDVYDK----E--ENTIYELKYTHMDD------LDKGRLNNYLRQLNYYIEMANAMAGYLIIVHAD-GRVEE  151 (201)
T ss_pred             cceEEEEEEEEEeC----C--CcEEEEEEccCCCc------ccccchHHHHHHHHHHHHHHHhcCcEEEEEcCC-CceEE
Confidence            233 6678888742    1  45799999964321      011233578899999999987766644333333 23334


Q ss_pred             Ee--CCHHHHHHHHHHHHHHHHHhccC
Q 019146          265 VY--RDLEYWDVMKMALSDFWWKHVQP  289 (345)
Q Consensus       265 V~--RDe~~i~~i~~~~~eFw~~~V~p  289 (345)
                      |.  -|++...++.+.+.+.-.+...|
T Consensus       152 V~~~~~~~~l~~~i~~I~~ii~~~~~P  178 (201)
T PHA00619        152 IKRDWSETDLENRANAFGISVEENILP  178 (201)
T ss_pred             eeccccHHHHHHHHHHHHHHHhcCcCC
Confidence            43  44444444444333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	345
1avq_A	228	Toroidal Structure Of Lambda Exonuclease Determined		1e-04
3slp_A	229	Crystal Structure Of Lambda Exonuclease In Complex		1e-04

>pdb|1AVQ|A Chain A, Toroidal Structure Of Lambda Exonuclease Determined At 2.4 Angstroms Length = 228

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 23/147 (15%)
Query: 105 WQKLRKHKLTASTFAGAIGF------WPRRRVQ----LWLEKIGAIEPFLGNLATCWSNI 154
           W KLR   +TAS     I        WP  ++     L  E    + P +   A  W   
Sbjct: 26  WHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQ 85
Query: 155 KEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKC 214
            E DA   ++  +G  V  +   +YRD+S      A SPDGL          G  LE+KC
Sbjct: 86  YENDARTLFEFTSGVNVTESPI-IYRDESMR---TACSPDGLCS-------DGNGLELKC 134
Query: 215 PFFNGELT--RASPWKRIPLYYIPQAQ 239
           PF + +    R   ++ I   Y+ Q Q
Sbjct: 135 PFTSRDFMKFRLGGFEAIKSAYMAQVQ 161

>pdb|3SLP|A Chain A, Crystal Structure Of Lambda Exonuclease In Complex With A 12 Bp Symmetric Dna Duplex Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 23/147 (15%)
Query: 105 WQKLRKHKLTASTFAGAIGF------WPRRRVQ----LWLEKIGAIEPFLGNLATCWSNI 154
           W KLR   +TAS     I        WP  ++     L  E    + P +   A  W   
Sbjct: 27  WHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQ 86
Query: 155 KEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKC 214
            E DA   ++  +G  V  +   +YRD+S      A SPDGL          G  LE+KC
Sbjct: 87  YENDARTLFEFTSGVNVTESPI-IYRDESMR---TACSPDGLCS-------DGNGLELKC 135
Query: 215 PFFNGELT--RASPWKRIPLYYIPQAQ 239
           PF + +    R   ++ I   Y+ Q Q
Sbjct: 136 PFTSRDFMKFRLGGFEAIKSAYMAQVQ 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
3k93_A	223	Phage related exonuclease; structural genomics, jo	3e-31
3sm4_A	229	Exonuclease; homologous recombination, DNA repair,	1e-29
3syy_A	216	Exonuclease; digest double stranded DNA, strict 5-	1e-26
2w45_A	470	Nuclease, alkaline exonuclease; endonuclease, gamm	1e-09
3fhd_A	508	ORF 37; enase like PD-(D/E)XK superfamily, hydrola	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT} Length = 223

 Score =  116 bits (292), Expect = 3e-31
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 32/207 (15%)

Query: 105 WQKLRKHKLTASTFAGAIG------FWPRRRV---------QLWLEKIGAIEPFLGNLAT 149
              L   K+  S+    IG           ++         ++    +     F GN  T
Sbjct: 2   MNNLYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYNAFEGNKYT 61

Query: 150 CWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGV 209
              N  EE A++   +  G  +            R+++++    D  V           +
Sbjct: 62  QKGNELEEQAIKLSGVTRGLALKKNTE------RRENEFITGECDIYVP------SRKLI 109

Query: 210 LEIKCPFFNG---ELTRASPWKRIPLYYIPQAQGLMEILDRD--WMDFYVWTPNGSSLFR 264
           ++ KC +  G     T  +  K     Y  Q QG M + D D   +DF ++    + +  
Sbjct: 110 IDTKCSWDIGSHPFFTDEAQEKAKKAGYDIQMQGYMWLWDCDQAQIDFVLFPTPLNLISA 169

Query: 265 VYRDLEYWDVMKMALSDFWWKHVQPAR 291
              D +  D+++          V   R
Sbjct: 170 YDSDFKLIDLVEQIPQIRRITTVIIQR 196

>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A Length = 229

 Score =  112 bits (281), Expect = 1e-29
 Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 27/197 (13%)

Query: 105 WQKLRKHKLTASTFAGAIGFWPRRR----------VQLWLEKIGAIEPFLGNLATCWSNI 154
           W KLR   +TAS     I      +            L  E    + P +   A  W   
Sbjct: 27  WHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQ 86

Query: 155 KEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKC 214
            E DA   ++  +G  V     +       +    A SPDGL             LE+ C
Sbjct: 87  YENDARTLFEFTSGVNVT----ESPIIYRDESMRTACSPDGLCSDGN-------GLELAC 135

Query: 215 PFFNGELT--RASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTP----NGSSLFRVYRD 268
           PF + +    R   ++ I   Y+ Q Q  M +  ++   F  + P     G     + RD
Sbjct: 136 PFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDPRMKREGLHYVVIERD 195

Query: 269 LEYWDVMKMALSDFWWK 285
            +Y       + +F  K
Sbjct: 196 EKYMASFDEIVPEFIEK 212

>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A Length = 216

 Score =  104 bits (259), Expect = 1e-26
 Identities = 45/197 (22%), Positives = 62/197 (31%), Gaps = 26/197 (13%)

Query: 103 KNWQKLRKHKLTASTFAGAIGFWPRR--------RVQLWLEKI-GAIEPFLGNLATCWSN 153
           + W   R  K+TAS  A  +                +L  +++ G  E    N A     
Sbjct: 6   EEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEIRFSNAAMQRGT 65

Query: 154 IKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIK 213
             E  A  RY + TG  V                   ASPDGLV           ++EIK
Sbjct: 66  ELEPHARARYIIETGEIVTEVGLI----DHPTIAGFGASPDGLVGDTG-------LIEIK 114

Query: 214 CPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSS-----LFRVYRD 268
           CP             +    YI Q Q  M    R W DF  +             R+ RD
Sbjct: 115 CPN-TWTHIETIKTGKPKPEYIKQMQTQMACTGRQWCDFVSYDDRLPDDMQYFCTRIERD 173

Query: 269 LEYWDVMKMALSDFWWK 285
                 ++  +S F  +
Sbjct: 174 DALIAEIETEVSAFLAE 190

>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A Length = 470

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 17/135 (12%)

Query: 88  ESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNL 147
           ES +  QS +       W  LR   +++S     I   P +  +                
Sbjct: 107 ESMTRGQSEN-----LMWDILRNGIISSSKLLSTIKNGPTKVFEPAPIS----TNHYFGG 157

Query: 148 ATCWSNIKEEDALERY-KLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLV-----DRFV 201
              +    E+   +   KLI G+     +F         D     S D  V       F+
Sbjct: 158 PVAFGLRCEDTVKDIVCKLICGDASANRQFGFMISP--TDGIFGVSLDLCVNVESQGDFI 215

Query: 202 YDLPSGGVLEIKCPF 216
                  + EIKC F
Sbjct: 216 LFTDRSCIYEIKCRF 230

>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A* Length = 508

 Score = 58.2 bits (140), Expect = 1e-09
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 20/138 (14%)

Query: 88  ESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNL 147
           E  +  QS +       W  LR   +++S F  A+    +   +                
Sbjct: 145 ERATSSQSLN-----PVWDALRDGIISSSKFHWAVKQ--QNTSKKIFSPWPITNNHFVAG 197

Query: 148 ATCWSNIKEEDA---LERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLV------D 198
              +    EE     L               F      S  +     S D         +
Sbjct: 198 PLAFGLRCEEVVKTLLATLLHPDETNCLDYGFMQ----SPQNGIFGVSLDFAANVKTDTE 253

Query: 199 RFVYDLPSGGVLEIKCPF 216
             +   P+  V EIKC F
Sbjct: 254 GRLQFDPNCKVYEIKCRF 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 41/283 (14%), Positives = 75/283 (26%), Gaps = 92/283 (32%)

Query: 27  KCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKHSS---NIQVFS-DSSKS-FSSYIGNS 81
            C+      +L+     +R     + L   +  H S   +    + D  KS    Y+   
Sbjct: 265 SCK------ILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 82  PSFLSGESHSI----------LQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQ 131
           P  L  E  +                L  W  NW+ +   KLT                 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTT---------------- 357

Query: 132 LWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAA 191
                   IE  L  L        E     +          F    V+         +  
Sbjct: 358 -------IIESSLNVL--------EPAEYRKM---------FDRLSVFPP----SAHI-- 387

Query: 192 SPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEI------- 244
            P  L+    +D+    V+ +        L       +     IP     +++       
Sbjct: 388 -PTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 245 LDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHV 287
           L R  +D Y           + +  +  D++   L  +++ H+
Sbjct: 445 LHRSIVDHY----------NIPKTFDSDDLIPPYLDQYFYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
3syy_A	216	Exonuclease; digest double stranded DNA, strict 5-	100.0
3sm4_A	229	Exonuclease; homologous recombination, DNA repair,	100.0
3k93_A	223	Phage related exonuclease; structural genomics, jo	99.96
2w45_A	470	Nuclease, alkaline exonuclease; endonuclease, gamm	99.84
3fhd_A	508	ORF 37; enase like PD-(D/E)XK superfamily, hydrola	99.78
4ic1_A	206	Uncharacterized protein; CAS4, crispr, MCSG, exonu	91.25

>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A

Probab=100.00  E-value=2.8e-46  Score=342.69  Aligned_cols=175  Identities=27%  Similarity=0.327  Sum_probs=148.6

Q ss_pred             ccCCCHHHHHHhcCCcccchHHHhh-----cCCCC-Ch--HHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHHHHHhC
Q 019146           98 LQHWFKNWQKLRKHKLTASTFAGAI-----GFWPR-RR--VQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERYKLITG  168 (345)
Q Consensus        98 ~qq~s~eW~~~R~~rITAS~~~~il-----G~~~~-s~--~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~ye~~~g  168 (345)
                      .+|||++|+++|+++||||++++++     |.+++ ++  .+||.||+ |..+++.+|++|+||+.+||.|++.|++.+|
T Consensus         1 ~~Q~s~eW~~~R~~~ItaS~~~~i~~~~~~G~~~~~~~~~~~L~~ek~tG~~~~~~~~~a~~~G~~lE~~a~~~~~~~~g   80 (216)
T 3syy_A            1 MEQRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEIRFSNAAMQRGTELEPHARARYIIETG   80 (216)
T ss_dssp             ----CCHHHHHHTTCEEGGGHHHHHCC-----CHHHHHHHHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHhcccCCCCchhhhHHHHHHHHHHcCCCCCccccHHHHHhHHhHHHHHHHHHHHHC
Confidence            4799999999999999999999999     77766 33  49999996 9887777899999999999999999999999


Q ss_pred             CeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCC
Q 019146          169 NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRD  248 (345)
Q Consensus       169 ~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~  248 (345)
                      ..|.++|+++    ++++|||+|||||++.       ++++||||||+...+... ...+++|.+||+|||+||+|+|++
T Consensus        81 ~~v~~~g~~~----~~~~~~l~ASpDG~v~-------~~~ilEiK~p~~~~~~~~-~~~~~ip~~Y~~QvQ~qm~Vtg~~  148 (216)
T 3syy_A           81 EIVTEVGLID----HPTIAGFGASPDGLVG-------DTGLIEIKCPNTWTHIET-IKTGKPKPEYIKQMQTQMACTGRQ  148 (216)
T ss_dssp             CCEECCCCEE----CSSSTTEEECCSEEET-------TTEEEEEECCCHHHHHHH-HHHCSCCHHHHHHHHHHHHHHTCS
T ss_pred             CEeEEcceEE----CCCCccceeCCCEeec-------CCceEEEecCCccchHHH-HhCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999866    7789999999999986       478999999987543211 224689999999999999999999


Q ss_pred             ceeEEEEeCC-----CceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146          249 WMDFYVWTPN-----GSSLFRVYRDLEYWDVMKMALSDFWW  284 (345)
Q Consensus       249 ~~dfvv~~~~-----~~~i~rV~RDe~~i~~i~~~~~eFw~  284 (345)
                      ||||++|+++     .+.+++|+||+++|+.|++++.+||.
T Consensus       149 ~~~f~v~~~~~~~~~~~~~~rI~RD~~~i~~l~~~~~~Fw~  189 (216)
T 3syy_A          149 WCDFVSYDDRLPDDMQYFCTRIERDDALIAEIETEVSAFLA  189 (216)
T ss_dssp             EEEEEEECTTSCGGGSEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCCCceEEEEEECCHHHHHHHHHHHHHHHH
Confidence            9999999873     57899999999999999999999995

>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A

Probab=100.00  E-value=1.6e-45  Score=340.62  Aligned_cols=179  Identities=23%  Similarity=0.335  Sum_probs=158.0

Q ss_pred             hhccccCCCHHHHHHhcCCcccchHHHhhcCCCC-Ch---------HHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHH
Q 019146           94 QSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPR-RR---------VQLWLEKI-GAIEPFLGNLATCWSNIKEEDALER  162 (345)
Q Consensus        94 ~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~-s~---------~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~  162 (345)
                      +..+++|+|++|+++|+++||||++++++|.+++ ++         .+||.||+ |..++ .++.+|+||+.+||.|++.
T Consensus        16 ~i~~~~Q~s~eWl~~R~~~ItaS~~~~ilg~~~~~sp~~~~~~~y~~~L~~ek~~g~~~~-~~~~a~~~G~~~Ep~ar~~   94 (229)
T 3sm4_A           16 DVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPE-VNAKALAWGKQYENDARTL   94 (229)
T ss_dssp             CTTCCCSSSHHHHHHTTTCEEGGGTHHHHCCCSSSSCCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHH
T ss_pred             eEEECCCCCHHHHHHHCCCccHhHHHHHHCCCCCCCccchhhHHHHHHHHHHHhcCCCCC-CChHHHHHHHHhHHHHHHH
Confidence            4557899999999999999999999999999998 77         69999997 77666 4689999999999999999


Q ss_pred             HHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCC--CCCCCcccHHHHHH
Q 019146          163 YKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASP--WKRIPLYYIPQAQG  240 (345)
Q Consensus       163 ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~--~~~iP~~Y~~QvQ~  240 (345)
                      |++.+|..|..+|+++    ++++|||+|||||++.       +.++||||||+..++......  +.++|.+||+|||+
T Consensus        95 y~~~tg~~V~~~g~~~----~~~~p~l~ASpDGlv~-------~~~ilEiKcp~~~~~~~~~~~~g~~~ip~~Y~~QvQ~  163 (229)
T 3sm4_A           95 FEFTSGVNVTESPIIY----RDESMRTACSPDGLCS-------DGNGLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQY  163 (229)
T ss_dssp             HHHHHSCCEECCCCEE----SSTTCCEEECCSEEET-------TSCEEEEECCSSHHHHHHHHHHGGGGTHHHHHHHHHH
T ss_pred             HHHHHCCeeEECCeEE----eCCCCceeecCceecC-------CCcEEEEecCCcchhhHHHHhcCcccCCHHHHHHHHH
Confidence            9999999999999987    6789999999999985       568999999987532111011  22699999999999


Q ss_pred             HhhhhcCCceeEEEEeCC----CceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146          241 LMEILDRDWMDFYVWTPN----GSSLFRVYRDLEYWDVMKMALSDFWW  284 (345)
Q Consensus       241 QM~Vtg~~~~dfvv~~~~----~~~i~rV~RDe~~i~~i~~~~~eFw~  284 (345)
                      ||+|+|+++|||++|+++    ++++++|+||+++|+.|++++.+||.
T Consensus       164 qm~vtg~~~~~f~~~~~~~~~~~~~i~rI~RD~~~i~~l~~~~~~Fw~  211 (229)
T 3sm4_A          164 SMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE  211 (229)
T ss_dssp             HHHHHTCSEEEEEEECTTSSSCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEEeCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            999999999999999884    58999999999999999999999995

>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT}

Probab=99.96  E-value=5.4e-29  Score=227.54  Aligned_cols=162  Identities=23%  Similarity=0.199  Sum_probs=128.4

Q ss_pred             HhcCCcccchHHHhhcCCC---------CC------hHHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCee
Q 019146          108 LRKHKLTASTFAGAIGFWP---------RR------RVQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERYKLITGNTV  171 (345)
Q Consensus       108 ~R~~rITAS~~~~ilG~~~---------~s------~~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V  171 (345)
                      +|.-+||||.++.+++..+         ++      ..+|..|++ |.. ++.+|++|+||+.+||.||+.|+..+|..+
T Consensus         5 ~~~~~iTaS~~~~v~~~~k~~~~~~~g~~s~~a~~Y~~eLi~E~ltG~~-~~~~n~~m~~G~~lEp~Ar~~y~~~~~~~~   83 (223)
T 3k93_A            5 LYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYN-AFEGNKYTQKGNELEEQAIKLSGVTRGLAL   83 (223)
T ss_dssp             GCCCCEEGGGHHHHHCCCSSHHHHHTTCCCHHHHHHHHHHHHHHHHCCC-SCCCCHHHHHHHHTHHHHHHHHHHHHTCCC
T ss_pred             cceeeeEechHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHhCCC-cccCCHHHHhhHhhhHHHHHHHHHHHCCcc
Confidence            5667899999999996644         22      368899998 764 677899999999999999999999999987


Q ss_pred             ee-eceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcc----cHHHHHHHhhhhc
Q 019146          172 YF-TEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLY----YIPQAQGLMEILD  246 (345)
Q Consensus       172 ~~-~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~----Y~~QvQ~QM~Vtg  246 (345)
                      .+ +|+..       .+++||||||++..      ++++||||||++.++...... +.++..    |++|||+||+|+|
T Consensus        84 ~~~~~~~~-------~d~~g~SpDGl~~~------~~gllEIKCp~s~~t~~~~~~-e~~~k~~~~~Y~~QmQ~~M~l~g  149 (223)
T 3k93_A           84 KKNTERRE-------NEFITGECDIYVPS------RKLIIDTKCSWDIGSHPFFTD-EAQEKAKKAGYDIQMQGYMWLWD  149 (223)
T ss_dssp             CCCCCCEE-------CSSEEECCSEEEGG------GTEEEEEEECSSTTTSCCSHH-HHHHHHHHHTHHHHHHHHHHHHT
T ss_pred             ccccceec-------cCCeeecCccccCC------CCCeEEEeCCCCccccchhhh-cCccccccccHHHHHHhhhhhcC
Confidence            74 56543       46899999999861      469999999998765332111 123333    9999999999999


Q ss_pred             CCc--eeEEEEe-C-----------------------CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146          247 RDW--MDFYVWT-P-----------------------NGSSLFRVYRDLEYWDVMKMALSDFWW  284 (345)
Q Consensus       247 ~~~--~dfvv~~-~-----------------------~~~~i~rV~RDe~~i~~i~~~~~eFw~  284 (345)
                      ++|  |||+.|. |                       ..+.+.+|+||+++|++|.+++..|-.
T Consensus       150 ~~~a~~df~l~~~P~~~~~~yd~~~~~~~~v~~i~~~~ri~~~~V~RDe~~I~~i~~~v~~~~~  213 (223)
T 3k93_A          150 CDQAQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQK  213 (223)
T ss_dssp             CSEEEEEEECCCCCGGGCCTTSCHHHHTHHHHTSCGGGGEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             CCceeeeEEEecChhhhccccCchhhhhhhhhccChhhceEEEEEecCHHHHHHHHHHHHHHHH
Confidence            999  7777764 3                       135788999999999999999988864

>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A

Probab=99.84  E-value=1.4e-21  Score=195.06  Aligned_cols=123  Identities=15%  Similarity=-0.008  Sum_probs=93.3

Q ss_pred             HHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHH-
Q 019146           87 GESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKL-  165 (345)
Q Consensus        87 ~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~-  165 (345)
                      +.+..||..|++||+|++|+.+|.++||||.++.++...+.+.+..|.   | ......++||+||+++|+.|++.|+. 
T Consensus       101 ~~~~~IE~~TRgQs~n~lW~~LR~GrITAS~~~~v~~~~~~k~~~~~~---~-~~~~~~s~Am~fG~~~E~~Ar~l~e~~  176 (470)
T 2w45_A          101 VLCSYVESMTRGQSENLMWDILRNGIISSSKLLSTIKNGPTKVFEPAP---I-STNHYFGGPVAFGLRCEDTVKDIVCKL  176 (470)
T ss_dssp             HHHHHHHHHHSSCTTSHHHHHHHTTCEESTTHHHHHHHCSGGGGSCC-----------CCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhccCCCHHHHHHHCCCccccccchhhcCCCcceeeecc---c-cccccCcHHHHHHHHhHHHHHHHHHHH
Confidence            467899999999999999999999999999999887522211111011   1 11122578999999999999999998 


Q ss_pred             --HhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCc-------eEEeeccCcCC
Q 019146          166 --ITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGG-------VLEIKCPFFNG  219 (345)
Q Consensus       166 --~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~g-------ilEIKcP~~~~  219 (345)
                        .++..|.+|||++    ++..+++||||||++.+. .+ .+.+       ++|||||+++.
T Consensus       177 ~~~~~~~V~~cGL~i----sp~~g~~GASPDglv~~~-~~-d~~~~~~p~~~vlEIKCP~kY~  233 (470)
T 2w45_A          177 ICGDASANRQFGFMI----SPTDGIFGVSLDLCVNVE-SQ-GDFILFTDRSCIYEIKCRFKYL  233 (470)
T ss_dssp             TTTTCCEECCCCCEE----CTTTSSEEECCSEEEEEE-EE-TTEEEEEEEEEEEEEEECGGGC
T ss_pred             hhccCCeeeccceEE----eCCCCcEEECCCeeeeee-cc-CCcccccCCccEEEEcCCcccc
Confidence              5688999999998    678899999999999531 11 1223       89999998764

>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A*

Probab=99.78  E-value=1.6e-19  Score=180.37  Aligned_cols=123  Identities=17%  Similarity=0.096  Sum_probs=84.8

Q ss_pred             HHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCC--CChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHH
Q 019146           88 ESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWP--RRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKL  165 (345)
Q Consensus        88 e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~--~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~  165 (345)
                      -+..||..|++|++|++|+.+|.++||||.+..++....  ....+    ..|.......++||.||+.+|+.|++.+++
T Consensus       140 l~~~IE~~TRGQS~N~LW~~LR~GrITAS~~~~v~~k~~s~~~~f~----~~~~~~~~~~s~AM~fG~~~E~~AK~li~~  215 (508)
T 3fhd_A          140 ICCLVERATSSQSLNPVWDALRDGIISSSKFHWAVKQQNTSKKIFS----PWPITNNHFVAGPLAFGLRCEEVVKTLLAT  215 (508)
T ss_dssp             HHHHHHHHTTTGGGSTTHHHHHTTSEEGGGHHHHHHTCSTTSCSCC--------------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCccCHHHHHHHcCCeeeccceehhhcccCCCCccc----cCCccccccCCHHHHHhHhhHHHHHHHHHH
Confidence            466789999999999999999999999999999874211  00000    012222223579999999999999997776


Q ss_pred             Hh---CCeeeeeceEeeccCCCCCCccccCCCCcccccccCC------CCCceEEeeccCcC
Q 019146          166 IT---GNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDL------PSGGVLEIKCPFFN  218 (345)
Q Consensus       166 ~~---g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~------~~~gilEIKcP~~~  218 (345)
                      ..   +..|.+|||++    ++..+++||||||++.|..++.      ++..|+||||||.+
T Consensus       216 ~i~~~~~~V~dCGL~I----sp~~Gl~GASPD~l~~~~~~~~G~l~~~~~~~vyEIKCR~KY  273 (508)
T 3fhd_A          216 LLHPDETNCLDYGFMQ----SPQNGIFGVSLDFAANVKTDTEGRLQFDPNCKVYEIKCRFKY  273 (508)
T ss_dssp             HTCTTSCEECCCCCEE----CTTTSSEEECCSEEEEEEECSSSCEEEEEEEEEEEEEECGGG
T ss_pred             HhhcCCCeeeeeeeeE----eCCCCcceEcCCeEEeeecCCCCceeecCCceEEEEecCccc
Confidence            54   57899999998    6778999999999997643221      12457999999876

>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}

Probab=91.25  E-value=1.4  Score=38.89  Aligned_cols=129  Identities=13%  Similarity=-0.050  Sum_probs=72.9

Q ss_pred             hHHHHHHHhc-C-CCCCCchHHHHHHHHhhHHHHHHHHHHhCC--eeee-eceEeeccCCCCCCccccCCCCcccccccC
Q 019146          129 RVQLWLEKIG-A-IEPFLGNLATCWSNIKEEDALERYKLITGN--TVYF-TEFQVYRDKSRDDDWLAASPDGLVDRFVYD  203 (345)
Q Consensus       129 ~~~L~~eKiG-~-~~~~~~n~am~~G~~~E~~A~~~ye~~~g~--~V~~-~G~~i~~~~~~~~p~lgASPDGlv~~~~~g  203 (345)
                      |.++|++... . ......|..|.-|...-+.+...+....|.  +|.- ..+.+.   +. .-.+.+-.|++...   +
T Consensus        37 pR~~~l~~~~~~~~~~E~~~~~~~~G~~~H~~~~~~~~~~~~v~~Ev~i~~~~~v~---~~-~~~l~GriD~i~~~---~  109 (206)
T 4ic1_A           37 PRRVRYESEYKELAISQVYAPSAILGDILHLGLESVLKGNFNAETEVETLREINVG---GK-VYKIKGRADAIIRN---D  109 (206)
T ss_dssp             HHHHHHHHHCHHHHGGGGGCHHHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEET---TE-EEEEEEEEEEEEC-----
T ss_pred             CCHHHHHHHccccccccccChHHHHHHHHHHHHHHHHHhccCccceEEEEEEEEeC---Ce-EEEEEEEEEEEEEc---C
Confidence            5668887662 1 111124788999999888887777666532  1111 112120   11 12356788998752   1


Q ss_pred             CCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEeCCCceEEEE--eCCHHHH
Q 019146          204 LPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRV--YRDLEYW  272 (345)
Q Consensus       204 ~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~~~~~~i~rV--~RDe~~i  272 (345)
                      .....++|+|+-....       . .....|.+|+..++++.+.+.+.++....+....+.+  +.|++.+
T Consensus       110 ~g~~~ive~Ktg~~~~-------~-~~~~~~~~Ql~~Y~~~l~~~~G~L~Y~~~~~~~~v~~~~~l~~~~~  172 (206)
T 4ic1_A          110 NGKSIVIEIKTSRSDK-------G-LPLIHHKMQLQIYLWLFSAEKGILVYITPDRIAEYEINEPLDEATI  172 (206)
T ss_dssp             --CCEEEEEECCSCCT-------T-SSCHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCCCCHHHH
T ss_pred             CCCEEEEEEecCCCCc-------c-cccHHHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEeCCcCCHHHH
Confidence            1134689999964321       1 1235678999999999998877543333333344444  3555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	345
d1avqa_	228	c.52.1.13 (A:) lambda exonuclease {Bacteriophage l	2e-32

>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: lambda exonuclease
domain: lambda exonuclease
species: Bacteriophage lambda [TaxId: 10710]

 Score =  119 bits (298), Expect = 2e-32
 Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 27/195 (13%)

Query: 105 WQKLRKHKLTASTFAGAIGFWP----------RRRVQLWLEKIGAIEPFLGNLATCWSNI 154
           W KLR   +TAS     I                   L  E    + P +   A  W   
Sbjct: 26  WHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQ 85

Query: 155 KEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKC 214
            E DA   ++  +G  V     +       +    A SPDGL          G  LE+KC
Sbjct: 86  YENDARTLFEFTSGVNVT----ESPIIYRDESMRTACSPDGLCS-------DGNGLELKC 134

Query: 215 PFF--NGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTP----NGSSLFRVYRD 268
           PF   +    R   ++ I   Y+ Q Q  M +  ++   F  + P     G     + RD
Sbjct: 135 PFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKNAWYFANYDPRMKREGLHYVVIERD 194

Query: 269 LEYWDVMKMALSDFW 283
            +Y       + +F 
Sbjct: 195 EKYMASFDEIVPEFI 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d1avqa_	228	lambda exonuclease {Bacteriophage lambda [TaxId: 1	100.0

>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: lambda exonuclease
domain: lambda exonuclease
species: Bacteriophage lambda [TaxId: 10710]

Probab=100.00  E-value=2.9e-44  Score=329.65  Aligned_cols=181  Identities=24%  Similarity=0.338  Sum_probs=158.5

Q ss_pred             hhhccccCCCHHHHHHhcCCcccchHHHhhcCCCC-C---------hHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHH
Q 019146           93 LQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPR-R---------RVQLWLEKIGAIEPFLGNLATCWSNIKEEDALER  162 (345)
Q Consensus        93 e~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~-s---------~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~  162 (345)
                      .+..+++|||+||+++|+++||||+++++||.+++ +         ..+|+.+|++..+++.+|.+|+||+.+||.|++.
T Consensus        14 ~~i~~~~QgS~EWl~~R~~~ItAS~~~~ilg~~~~~~~~~~~~~~~~~~l~~ek~~g~~~~~~~~a~~~G~~~Ep~a~~~   93 (228)
T d1avqa_          14 IDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTL   93 (228)
T ss_dssp             CCGGGCCTTSHHHHHTTTTCEETTTGGGTTCCCSSSSCCCHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCcCCHHHHHHHCCCCCHHHHHHHHCCCccCCcchhhHHHHHHHHHHHHHcCCCCCCCcHHHHhchhhCHHHHHH
Confidence            44568899999999999999999999999999886 2         2578999996666677899999999999999999


Q ss_pred             HHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCccccc--CCCCCCCcccHHHHHH
Q 019146          163 YKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRA--SPWKRIPLYYIPQAQG  240 (345)
Q Consensus       163 ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~--~~~~~iP~~Y~~QvQ~  240 (345)
                      |++.+|..|.++|++.    |+++|||+|||||++.       +.++||||||++..+....  ...+.+|.+||+|||+
T Consensus        94 ~~~~~g~~v~e~g~~~----~~~~~~l~aSpDGl~~-------~~~~lEIKcp~~~~~~~~~~~~~~~~ip~~Y~~QvQ~  162 (228)
T d1avqa_          94 FEFTSGVNVTESPIIY----RDESMRTACSPDGLCS-------DGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQY  162 (228)
T ss_dssp             HHHHHCCCEECCCCEE----SSTTCSEEECCSEEET-------TSCEEEEECCSSHHHHHHHHHHCGGGSCHHHHHHHHH
T ss_pred             HHHHhceEEEeeceEE----ecccceeeeccCcccc-------cCceEEEEcccchhhhhhhhccccCCCCHHHHHHHHH
Confidence            9999999999999986    6789999999999986       4578999999976543221  1234799999999999


Q ss_pred             HhhhhcCCceeEEEEeC----CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146          241 LMEILDRDWMDFYVWTP----NGSSLFRVYRDLEYWDVMKMALSDFWW  284 (345)
Q Consensus       241 QM~Vtg~~~~dfvv~~~----~~~~i~rV~RDe~~i~~i~~~~~eFw~  284 (345)
                      ||+|+|+++|||++|++    .++++++|+||+++++.|++++.+||.
T Consensus       163 qM~vtg~~~~~fv~~~p~~~~~~~~~~~i~rD~~~i~~l~~~~~~Fw~  210 (228)
T d1avqa_         163 SMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE  210 (228)
T ss_dssp             HHHHHTCSEEEEEEECTTCSSCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEEccCCCCCceEEEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999975    368999999999999999999999995