Citrus Sinensis ID: 019153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MDPQIYGLAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGIRADGAGPERRGDGEADNGSIERTGGAGADYLLPHYSGVSNGGEHVQLR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccHHHHHHHHHHcHHHHHHHccccccEEEEccccHHHHccccHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccEEEccEEEEccccccccccEEEEEcccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEHHHHHHHHHHHHHccccccccccccccccccEEEEEEccccHHHHHHHHHHHcHHHHHHHHcccccEEEEcccHHHHHHccccHHHHHHcccccHHHHHHHHHHcEccccccHHHHHHccccccEEEcccccEEEEEEcccEEEEcccEEEcccHccccccEEEEEcEEEccccHHHHHHHHccHHcHHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEcccccccccccccccccHHHccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MDPQIYGLAFFFLLVVpsvtalphkttssssqpqinsNSVLVALLDSHYTELAELVEKALLLQTLEEAVgrhnitifapknealerelDPEFKRfllepgnvkSLQTLLMFHilpsrigsrnwpdeksgsrkhntlWNDFVHLSSKsskrligsaeifrpdditrpdgvihgierllvprsvqedfnrrrnLRSISavlpqgapevdprthrlkkpaapvpagappilpiydamapgpslapapapgpggahrhfngerQVKDFIHTLLHygqrnggysgeldvvsdgngpfgvrgiradgagperrgdgeadngsiertggagadyllphysgvsnggehvqlr
Flexible Loop (DISEMBL)
MDPQIYGLAFFFLLVVPSVTALPHkttssssqpqinSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNitifapknealeRELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGsaeifrpdditrpdgvihgierllvprsvqedfnrrrnlrsisavlpqgapevdprthRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGiradgagperrgdgeadngsIERTGGAGADYLLPhysgvsnggehvqlr
Low Complexity Region (SEG)
MDPQIYGLAFFFLLVVPSVTALPHKTTssssqpqinsnsVLVALLDSHYTelaelvekalllQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKpaapvpagappilpIYDamapgpslapapapgpggaHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGIRADGAGPERRGDGEADNGSIERTGGAGADYLLPHYSGVSNGGEHVQLR
Disordered region (IsUnstruct)
****IYGLAFFFLLVVPSVTAL****************SVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIG***************TLWNDFVHLS*****RLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV*******************************************************************************KDFIHTLLHYGQRNGGYSGELDVVSDGN*PFGV********************************YLL****************
Disordered Region (DISOPRED)
***QIYGLAFFFLLVVPSVTA******************VLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDF**************Q**PEV*****************APPILPIYDAMAP******************FNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRG*************************GAGADYLLPHYS************
Disordered Region (DISEMBL)
MDPQIYGLAFFFLLVVPSVTAL************INSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRN********RKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGIRADGA***********NGSIERTGGAGADYLLPHYSGVSNGGEHVQLR
Disordered Region (DISPRO)
*DPQIYGLAFFFLLVVPSVTALPH**********INSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGIRADGA*************S*ERTGGAGADYLLPHYSGVSNG*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPQIYGLAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDGNGPFGVRGIRADGAGPERRGDGEADNGSIERTGGAGADYLLPHYSGVSNGGEHVQLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q66GR0	458	Fasciclin-like arabinogal	yes	no	0.814	0.613	0.719	1e-105
Q93W32	462	Fasciclin-like arabinogal	no	no	0.805	0.601	0.701	3e-98
Q8RWC5	445	Fasciclin-like arabinogal	no	no	0.710	0.550	0.757	1e-94
Q9FT45	436	Fasciclin-like arabinogal	no	no	0.730	0.577	0.722	7e-87
Q62009	838	Periostin OS=Mus musculus	no	no	0.344	0.142	0.251	0.0006
Q8WWQ8	2551	Stabilin-2 OS=Homo sapien	yes	no	0.423	0.057	0.240	0.0007
O11780	683	Transforming growth facto	yes	no	0.414	0.209	0.262	0.0008

>sp|Q66GR0|FLA17_ARATH Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 241/292 (82%), Gaps = 11/292 (3%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD +IYG         FF +L+  + +AL    + SS   QINSNSVLVALLDS YTELA
Sbjct: 1   MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELA 60

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI
Sbjct: 61  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHI 120

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGI 173
           +P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGI
Sbjct: 121 IPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGI 180

Query: 174 ERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDA 233
           ERLL+PRSVQEDFNRRR+L+SISAVLP+GAPEVDPRT+RLKKPAAPVPAG+PP LPI  A
Sbjct: 181 ERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSA 240

Query: 234 MAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           MAPGPSLAPAPAPGPGG   HF+GE QVKDFIHTLLHY    GGY+   D++
Sbjct: 241 MAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHY----GGYNEMADIL 288

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93W32|FLA18_ARATH Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1

 Score =  358 bits (919), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/298 (70%), Positives = 239/298 (80%), Gaps = 20/298 (6%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD  IYG        +FFFLL   ++ +  H  T S    QINSNSVLVALLDS YTELA
Sbjct: 1   MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSG---QINSNSVLVALLDSRYTELA 57

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI
Sbjct: 58  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHI 117

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS---KSSKRLIGSAEIFRPDDITRPDGV 169
           +P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRPDG+
Sbjct: 118 IPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGL 177

Query: 170 IHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKK--PAAPVPAGAPPI 227
           IHGIERLL+PRSVQEDFNRRRNLRSISAVLP+GAPE+DPRT+RLKK   A  VPAG+PP+
Sbjct: 178 IHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPV 237

Query: 228 LPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           LPI  AMAPGPSLAPAPAPGPGGAH+HFNG+ QVKDFIHTLLHY    GGY+   D++
Sbjct: 238 LPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHY----GGYNEMADIL 291

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWC5|FLA16_ARATH Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1

 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/252 (75%), Positives = 213/252 (84%), Gaps = 7/252 (2%)

Query: 34  QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFK 93
           QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVG+HNITIFAP+N+ALER LDP FK
Sbjct: 33  QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFK 92

Query: 94  RFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIG 153
            FLLEP N+KSLQ+LLMFHILP RI S  WP   S S  H TL ND +HL+   +   + 
Sbjct: 93  SFLLEPRNLKSLQSLLMFHILPKRITSPQWP---SLSHHHRTLSNDHLHLTVDVNTLKVD 149

Query: 154 SAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRL 213
           SAEI RPDD+ RPDG+IHGIERLL+PRSVQEDFNRRR+LRSISAV+P+GAPEVDPRTHRL
Sbjct: 150 SAEIIRPDDVIRPDGIIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRL 209

Query: 214 KKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQ 273
           KKP+  VPAGAPP+LPIYDAM+PGPSLAPAPAPGPGG   HFNG+ QVKDFIHTLLHY  
Sbjct: 210 KKPSPAVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHY-- 267

Query: 274 RNGGYSGELDVV 285
             GGY+   D++
Sbjct: 268 --GGYNEMADIL 277

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT45|FLA15_ARATH Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1

 Score =  320 bits (821), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 193/267 (72%), Positives = 218/267 (81%), Gaps = 15/267 (5%)

Query: 19  VTALPHKTTSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFA 78
            TALP K  S     QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVG+HNITIFA
Sbjct: 18  TTALPDKPGSG----QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGQHNITIFA 73

Query: 79  PKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWN 138
           P+N+ALE+ LDPEFK FLL+P N+KSLQ+LLMFHILP RI S   P   S    H TL N
Sbjct: 74  PRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITS---PQFSSAVVSHRTLSN 130

Query: 139 DFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAV 198
           D +H ++      + SAEI +PDD+TRPDG+IHGIERLL+PRSVQEDFNRRR+LRSI+AV
Sbjct: 131 DHLHFTNGK----VNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFNRRRSLRSIAAV 186

Query: 199 LPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGE 258
           LP+GAPEVDPRTHRLKK  AP+PAGAPP+LP+YDAM+PGPSLAPAPAPGPGG   HFNGE
Sbjct: 187 LPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHFNGE 246

Query: 259 RQVKDFIHTLLHYGQRNGGYSGELDVV 285
            QVKDFIHTLLHY    GGY+   D++
Sbjct: 247 AQVKDFIHTLLHY----GGYNEMADIL 269

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q62009|POSTN_MOUSE Periostin OS=Mus musculus GN=Postn PE=1 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 59  ALLLQTLEEAVGRH-NITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSR 117
           A +   L E++GR  + T+FAP NEA E+      +R +   G+  + + L+ +HIL   
Sbjct: 255 AAITSDLLESLGRDGHFTLFAPTNEAFEKLPRGVLERIM---GDKVASEALMKYHIL--- 308

Query: 118 IGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLL 177
             +    +  +G     T+  + + +  +     I   ++    DI   +GVIH I+ +L
Sbjct: 309 -NTLQCSEAITGGAVFETMEGNTIEIGCEGDSISINGIKMVNKKDIVTKNGVIHLIDEVL 367

Query: 178 VPRSVQE 184
           +P S ++
Sbjct: 368 IPDSAKQ 374

Binds to heparin. Induces cell attachment and spreading and plays a role in cell adhesion. May play a role in extracellular matrix mineralization.

Mus musculus (taxid: 10090)

>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens GN=STAB2 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 32  QPQINSNS--VLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELD 89
           +P   SN+   ++ +L   Y++   L+E+  L   L+E       TIF P NEAL    D
Sbjct: 509 EPTFESNNEQTIMTMLQPRYSKFRSLLEETNLGHALDEDGVGGPYTIFVPNNEALNNMKD 568

Query: 90  PEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKH-NTLWNDFVHLSSKSS 148
                +LL P   + L  L+ +HI+P              S  H  ++ N  +  ++  +
Sbjct: 569 GTLD-YLLSPEGSRKLLELVRYHIVP----FTQLEVATLISTPHIRSMANQLIQFNTTDN 623

Query: 149 KRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV 182
            +++ +       +IT  +G I+ +  +L+P S+
Sbjct: 624 GQILANDVAMEEIEITAKNGRIYTLTGVLIPPSI 657

Phosphatidylserine receptor that enhances the engulfment of apoptotic cells. Hyaluronan receptor that binds to and mediates endocytosis of hyaluronic acid (HA). Acts also, in different species, as a primary systemic scavenger receptor for heparin (Hep), chondroitin sulfate (CS), dermatan sulfate (DS), nonglycosaminoglycan (GAG), acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides and advanced glycation end products (AGE). May serve to maintain tissue integrity by supporting extracellular matrix turnover or it may contribute to maintaining fluidity of bodily liquids by resorption of hyaluronan. Counter receptor which plays an important role in lymphocyte recruitment in the hepatic vasculature. Binds to both Gram-positive and Gram-negative bacteria and may play a role in defense against bacterial infection. The proteolytically processed 190 kDa form also functions as an endocytosis receptor for heparin internalisation as well as HA and CS.

Homo sapiens (taxid: 9606)

>sp|O11780|BGH3_PIG Transforming growth factor-beta-induced protein ig-h3 OS=Sus scrofa GN=TGFBI PE=1 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 70/179 (39%), Gaps = 36/179 (20%)

Query: 62  LQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSR 121
           L TL E  G++  T+ AP NEA E+       R L +P   ++L+ LL  HIL S + + 
Sbjct: 265 LNTLLEGDGQY--TLLAPSNEAFEKIPAETLNRILGDP---EALRDLLNNHILKSAMCA- 318

Query: 122 NWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRS 181
              +         TL    + +        I    I    D+   +GVIH I+ LL+P S
Sbjct: 319 ---EAIVAGLSLETLEGTTLEVGCSGDMLTINGKPIISNKDVLATNGVIHFIDELLIPDS 375

Query: 182 VQEDF--------------------------NRRRNLRS-ISAVLPQGAPEVDPRTHRL 213
            +  F                          N R  L + +++V   G P +D RT  L
Sbjct: 376 AKTLFELAAESDVSTAVDLFRQAGLGSHLSGNERLTLLAPMNSVFKDGTPRIDARTKNL 434

Binds to type I, II, and IV collagens. This adhesion protein may play an important role in cell-collagen interactions. In cartilage, may be involved in endochondral bone formation.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
42567693	458	fasciclin-like arabinogalactan protein 1	0.814	0.613	0.719	1e-103
9758419	465	unnamed protein product [Arabidopsis tha	0.814	0.604	0.719	1e-103
224091467	466	predicted protein [Populus trichocarpa]	0.814	0.603	0.719	1e-102
157273662	459	fasciclin-like arabinogalactan protein 1	0.753	0.566	0.752	1e-98
297806667	458	beta-Ig-H3 domain-containing protein [Ar	0.765	0.576	0.746	3e-98
224138258	423	predicted protein [Populus trichocarpa]	0.715	0.583	0.781	7e-98
225439346	466	PREDICTED: fasciclin-like arabinogalacta	0.811	0.600	0.708	3e-97
18399319	462	fasciclin-like arabinogalactan protein 1	0.805	0.601	0.701	2e-96
6041822	447	unknown protein [Arabidopsis thaliana]	0.805	0.621	0.701	5e-96
255566213	462	conserved hypothetical protein [Ricinus	0.814	0.608	0.699	1e-95

>gi|42567693|ref|NP_196257.2| fasciclin-like arabinogalactan protein 17 [Arabidopsis thaliana] gi|75115364|sp|Q66GR0.1|FLA17_ARATH RecName: Full=Fasciclin-like arabinogalactan protein 17; Flags: Precursor gi|51536454|gb|AAU05465.1| At5g06390 [Arabidopsis thaliana] gi|56121932|gb|AAV74247.1| At5g06390 [Arabidopsis thaliana] gi|332003626|gb|AED91009.1| fasciclin-like arabinogalactan protein 17 [Arabidopsis thaliana]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 241/292 (82%), Gaps = 11/292 (3%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD +IYG         FF +L+  + +AL    + SS   QINSNSVLVALLDS YTELA
Sbjct: 1   MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELA 60

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI
Sbjct: 61  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHI 120

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGI 173
           +P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGI
Sbjct: 121 IPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGI 180

Query: 174 ERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDA 233
           ERLL+PRSVQEDFNRRR+L+SISAVLP+GAPEVDPRT+RLKKPAAPVPAG+PP LPI  A
Sbjct: 181 ERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSA 240

Query: 234 MAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           MAPGPSLAPAPAPGPGG   HF+GE QVKDFIHTLLHY    GGY+   D++
Sbjct: 241 MAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHY----GGYNEMADIL 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758419|dbj|BAB08961.1| unnamed protein product [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 241/292 (82%), Gaps = 11/292 (3%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD +IYG         FF +L+  + +AL    + SS   QINSNSVLVALLDS YTELA
Sbjct: 1   MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELA 60

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI
Sbjct: 61  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHI 120

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGI 173
           +P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGI
Sbjct: 121 IPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGI 180

Query: 174 ERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDA 233
           ERLL+PRSVQEDFNRRR+L+SISAVLP+GAPEVDPRT+RLKKPAAPVPAG+PP LPI  A
Sbjct: 181 ERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSA 240

Query: 234 MAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           MAPGPSLAPAPAPGPGG   HF+GE QVKDFIHTLLHY    GGY+   D++
Sbjct: 241 MAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHY----GGYNEMADIL 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091467|ref|XP_002309262.1| predicted protein [Populus trichocarpa] gi|222855238|gb|EEE92785.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/296 (71%), Positives = 246/296 (83%), Gaps = 15/296 (5%)

Query: 1   MDPQIYGLA-------FFFLLVVPSVTALPH--KTTSSSSQPQ-INSNSVLVALLDSHYT 50
           MD  IYG++           L V S++ALPH  KT +S+   Q INSNSVLVALLDSHYT
Sbjct: 1   MDSHIYGVSKKTLLLFTLLCLSVSSISALPHQNKTGNSTGTGQMINSNSVLVALLDSHYT 60

Query: 51  ELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLM 110
           ELAELVEKALLLQTLEEAVG+HNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTL++
Sbjct: 61  ELAELVEKALLLQTLEEAVGKHNITIFAPRNEALERQLDPEFKRFLLEPGNLKSLQTLVL 120

Query: 111 FHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSS-KRLIGSAEIFRPDDITRPDGV 169
           FHI+P R+GS +WP  KS   +H TL ND +HL +K+S K+++GSA++ RPDD+TRPDGV
Sbjct: 121 FHIIPQRVGSNDWPGHKSNPSRHTTLCNDHLHLITKNSGKKVVGSADVTRPDDVTRPDGV 180

Query: 170 IHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILP 229
           IHGIERLLVP+SVQEDFNRRRNLRSISAVLP+GAPEVDPRTHRLKKP  PV AG+PP+LP
Sbjct: 181 IHGIERLLVPQSVQEDFNRRRNLRSISAVLPEGAPEVDPRTHRLKKPEPPVRAGSPPVLP 240

Query: 230 IYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           IYDAMAPGPSLAPAPAPGPGG H HF+GE QVKDFI TLL Y    GGY+   D++
Sbjct: 241 IYDAMAPGPSLAPAPAPGPGGPHHHFDGESQVKDFIQTLLLY----GGYNEMADIL 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157273662|gb|ABV27485.1| fasciclin-like arabinogalactan protein 14 [Gossypium hirsutum]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/267 (75%), Positives = 229/267 (85%), Gaps = 7/267 (2%)

Query: 21  ALPHKTTSSSS-QPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAP 79
           ALP   +  SS   QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVG+HNITIFAP
Sbjct: 28  ALPQNPSGKSSPSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAP 87

Query: 80  KNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWND 139
           +NEALER+LDPEFKRFLLEPGN+KSLQ+LLMFHI+P R+GS  WPD K+G  KHNTL ND
Sbjct: 88  RNEALERQLDPEFKRFLLEPGNLKSLQSLLMFHIIPKRVGSHQWPDPKTGPVKHNTLCND 147

Query: 140 FVHLSSKSS-KRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAV 198
            + L+S+S+ K+ + SAE+ RPDD+ RPDGVIHGI++LL+PRSV EDFNRRRNLRSI+AV
Sbjct: 148 HIRLTSQSTGKKTVDSAELVRPDDVIRPDGVIHGIQQLLIPRSVIEDFNRRRNLRSITAV 207

Query: 199 LPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGE 258
           LP+GAPEVDPRTHRLK P AP+P GAPP+LPIYDAMAPGPSLAPAPAPGPGG   HF+GE
Sbjct: 208 LPEGAPEVDPRTHRLKNP-APIPVGAPPVLPIYDAMAPGPSLAPAPAPGPGGPRHHFDGE 266

Query: 259 RQVKDFIHTLLHYGQRNGGYSGELDVV 285
            QVKDFI TLLHY    GGY+   D++
Sbjct: 267 SQVKDFIQTLLHY----GGYNEMADIL 289

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806667|ref|XP_002871217.1| beta-Ig-H3 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317054|gb|EFH47476.1| beta-Ig-H3 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 200/268 (74%), Positives = 228/268 (85%), Gaps = 4/268 (1%)

Query: 18  SVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIF 77
           + +AL      SS   QINSNSVLVALLDS YTELAELVEKALLLQTLE+AVGRHNITIF
Sbjct: 25  AASALSKNPNPSSGSGQINSNSVLVALLDSRYTELAELVEKALLLQTLEDAVGRHNITIF 84

Query: 78  APKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLW 137
           AP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI+P+R+G   WP E+ G  KH+TL 
Sbjct: 85  APRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHIIPNRVGLDQWPPEELGRVKHHTLG 144

Query: 138 NDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISA 197
           ND VHLS+   K+++  AEI RPDD+TRPDG+IHGIERLL+PRSVQEDFNRRR+L+SI+A
Sbjct: 145 NDQVHLSNGEGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIPRSVQEDFNRRRSLQSITA 204

Query: 198 VLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNG 257
           VLP+GAPEVDPRT+RLKKPAAPVPAG+PP LPI  AMAPGPSLAPAPAPGPGG   HF+G
Sbjct: 205 VLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFDG 264

Query: 258 ERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           E QVKDFIHTLLHY    GGY+   D++
Sbjct: 265 EAQVKDFIHTLLHY----GGYNEMADIL 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138258|ref|XP_002322769.1| predicted protein [Populus trichocarpa] gi|222867399|gb|EEF04530.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/252 (78%), Positives = 224/252 (88%), Gaps = 5/252 (1%)

Query: 35  INSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKR 94
           INSNSVLVALLDSHYTELAELVEKALLLQTLEEAVG+HNITIFAPKNEALER+LDPEFKR
Sbjct: 2   INSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPKNEALERQLDPEFKR 61

Query: 95  FLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSS-KRLIG 153
           FLLEPGN+KSLQTLL+FHI+P R+GS +WP  KS   +H TL ND +HL +K+S K+L+G
Sbjct: 62  FLLEPGNLKSLQTLLLFHIIPQRVGSNDWPGHKSNPTRHTTLCNDHLHLITKNSGKKLVG 121

Query: 154 SAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRL 213
           +A + RPDD+TRPDGVIHGIERLLVP+SVQEDFNRRRNLRSISAVLP+GAPEVDPRTHRL
Sbjct: 122 AAVLTRPDDVTRPDGVIHGIERLLVPQSVQEDFNRRRNLRSISAVLPEGAPEVDPRTHRL 181

Query: 214 KKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQ 273
           KKP  PV AG+PP+LP+YDAM+PGPSLAPAPAPGPGG H HF+GE QVKDFI TL+HY  
Sbjct: 182 KKPEPPVRAGSPPVLPVYDAMSPGPSLAPAPAPGPGGPHHHFDGESQVKDFIQTLVHY-- 239

Query: 274 RNGGYSGELDVV 285
             GGY+   D++
Sbjct: 240 --GGYNEMADIL 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439346|ref|XP_002270321.1| PREDICTED: fasciclin-like arabinogalactan protein 17 [Vitis vinifera]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 211/298 (70%), Positives = 240/298 (80%), Gaps = 18/298 (6%)

Query: 1   MDPQIYG-----------LAFFFLLVVPS-VTALPHKTTSSSSQPQINSNSVLVALLDSH 48
           MD  IYG           LA FFLL   +  +ALP K +SSS+ PQINSNSVLVALLDSH
Sbjct: 1   MDYHIYGFPNLKMINILFLASFFLLSTHAHSSALPRKPSSSSNSPQINSNSVLVALLDSH 60

Query: 49  YTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTL 108
           YTELAELVEKALLL TLE+AVG+HNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTL
Sbjct: 61  YTELAELVEKALLLPTLEDAVGKHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTL 120

Query: 109 LMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSK-SSKRLIGSAEIFRPDDITRPD 167
           L+FHI+P+RIGS  WP+  SG   H+TL ND + L SK S  R +  A + +PD + RPD
Sbjct: 121 LLFHIIPNRIGSGEWPEGLSGDPTHSTLSNDRLRLESKGSGVRSVDLAAVVQPDAVLRPD 180

Query: 168 GVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPI 227
           GVIHGIERLL+PRSV+EDFNRRR+LRSISAVLP+GAPEVDPRTHRLKKP + VPAGAPP+
Sbjct: 181 GVIHGIERLLIPRSVEEDFNRRRSLRSISAVLPEGAPEVDPRTHRLKKPVS-VPAGAPPV 239

Query: 228 LPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           LPIYDAMAPGPSLAPAPAPGPGG   HF+GE QVKDFI TLLHY    GGY+   D++
Sbjct: 240 LPIYDAMAPGPSLAPAPAPGPGGPRGHFDGESQVKDFIQTLLHY----GGYNEMADIL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399319|ref|NP_566398.1| fasciclin-like arabinogalactan protein 18 [Arabidopsis thaliana] gi|75163224|sp|Q93W32.1|FLA18_ARATH RecName: Full=Fasciclin-like arabinogalactan protein 18; Flags: Precursor gi|15810317|gb|AAL07046.1| unknown protein [Arabidopsis thaliana] gi|16604519|gb|AAL24265.1| AT3g11700/T19F11_10 [Arabidopsis thaliana] gi|22136768|gb|AAM91728.1| unknown protein [Arabidopsis thaliana] gi|332641564|gb|AEE75085.1| fasciclin-like arabinogalactan protein 18 [Arabidopsis thaliana]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/298 (70%), Positives = 239/298 (80%), Gaps = 20/298 (6%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD  IYG        +FFFLL   ++ +  H  T S    QINSNSVLVALLDS YTELA
Sbjct: 1   MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSG---QINSNSVLVALLDSRYTELA 57

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI
Sbjct: 58  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHI 117

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS---KSSKRLIGSAEIFRPDDITRPDGV 169
           +P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRPDG+
Sbjct: 118 IPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGL 177

Query: 170 IHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKK--PAAPVPAGAPPI 227
           IHGIERLL+PRSVQEDFNRRRNLRSISAVLP+GAPE+DPRT+RLKK   A  VPAG+PP+
Sbjct: 178 IHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPV 237

Query: 228 LPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           LPI  AMAPGPSLAPAPAPGPGGAH+HFNG+ QVKDFIHTLLHY    GGY+   D++
Sbjct: 238 LPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHY----GGYNEMADIL 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6041822|gb|AAF02137.1|AC009918_9 unknown protein [Arabidopsis thaliana]

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 209/298 (70%), Positives = 239/298 (80%), Gaps = 20/298 (6%)

Query: 1   MDPQIYG-------LAFFFLLVVPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELA 53
           MD  IYG        +FFFLL   ++ +  H  T S    QINSNSVLVALLDS YTELA
Sbjct: 1   MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSG---QINSNSVLVALLDSRYTELA 57

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI
Sbjct: 58  ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHI 117

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS---KSSKRLIGSAEIFRPDDITRPDGV 169
           +P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRPDG+
Sbjct: 118 IPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGL 177

Query: 170 IHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKK--PAAPVPAGAPPI 227
           IHGIERLL+PRSVQEDFNRRRNLRSISAVLP+GAPE+DPRT+RLKK   A  VPAG+PP+
Sbjct: 178 IHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPV 237

Query: 228 LPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           LPI  AMAPGPSLAPAPAPGPGGAH+HFNG+ QVKDFIHTLLHY    GGY+   D++
Sbjct: 238 LPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHY----GGYNEMADIL 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566213|ref|XP_002524094.1| conserved hypothetical protein [Ricinus communis] gi|223536662|gb|EEF38304.1| conserved hypothetical protein [Ricinus communis]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/293 (69%), Positives = 239/293 (81%), Gaps = 12/293 (4%)

Query: 1   MDPQIYGLA------FFFLLVVPSVTALPHKTTSSSSQPQINSNS-VLVALLDSHYTELA 53
           MDP IYG++      FFF       +ALP  ++S  S     +++ VLVALLDSHYTELA
Sbjct: 1   MDPHIYGVSKFLLFTFFFFFFSSFSSALPQNSSSKPSSNSGINSNSVLVALLDSHYTELA 60

Query: 54  ELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
           ELVEKALLLQTLEE+VG+HNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI
Sbjct: 61  ELVEKALLLQTLEESVGKHNITIFAPRNEALERQLDPEFKRFLLEPGNLKSLQTLLMFHI 120

Query: 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSS-KRLIGSAEIFRPDDITRPDGVIHG 172
           +P R+GS +WP + S    H TL N+ +HL  + S K+++ SAE+ RPDD+ RPDGVIHG
Sbjct: 121 IPKRVGSSDWPTDASNPTWHITLSNNHLHLDVRDSGKKVVDSAELVRPDDVIRPDGVIHG 180

Query: 173 IERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYD 232
           IERLL+P+SVQEDFNRRR+LRSISAVLP+GAPEVDPRTHRLKKPAAPVP GAPP+LPIYD
Sbjct: 181 IERLLIPQSVQEDFNRRRSLRSISAVLPEGAPEVDPRTHRLKKPAAPVPVGAPPVLPIYD 240

Query: 233 AMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
           AMAPGPSLAPAPAPGPGG H HF+GE QVKDFI TLLHY    GGY+   D++
Sbjct: 241 AMAPGPSLAPAPAPGPGGPHHHFDGESQVKDFIQTLLHY----GGYNEMADIL 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2164290	458	FLA17 "AT5G06390" [Arabidopsis	0.814	0.613	0.547	5e-76
TAIR|locus:2098338	462	FLA18 "AT3G11700" [Arabidopsis	0.805	0.601	0.543	4.6e-73
TAIR|locus:2039270	445	FLA16 "FASCICLIN-like arabinog	0.794	0.615	0.548	2.4e-69
TAIR|locus:2100564	436	FLA15 "FASCICLIN-like arabinog	0.762	0.603	0.546	8e-69
UNIPROTKB|F1NW88	2517	F1NW88 "Uncharacterized protei	0.295	0.040	0.289	3.5e-05

TAIR|locus:2164290 FLA17 "AT5G06390" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 160/292 (54%), Positives = 190/292 (65%)

Query:     1 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTXXX 53
             MD +IYG         FF +L+  + +AL    +            VLVALLDS YT   
Sbjct:     1 MDRRIYGGSAVIHLFLFFSVLIFSAASALSKNQSPSSGSGQINSNSVLVALLDSRYTELA 60

Query:    54 XXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
                      QTLE+AVGRHNITIFAP+NEALER+LDPEFKRFLLEPGN+KSLQTLLMFHI
Sbjct:    61 ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQTLLMFHI 120

Query:   114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGI 173
             +P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGI
Sbjct:   121 IPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGI 180

Query:   174 ERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDX 233
             ERLL+PRSVQEDFNRRR+L+SISAVLP+GAPEVDPRT+RLKK              I   
Sbjct:   181 ERLLIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPAAPVPAGSPPALPIQSA 240

Query:   234 XXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
                                 HF+GE QVKDFIHTLLHYG    GY+   D++
Sbjct:   241 MAPGPSLAPAPAPGPGGKQHHFDGEAQVKDFIHTLLHYG----GYNEMADIL 288

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2098338 FLA18 "AT3G11700" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 162/298 (54%), Positives = 190/298 (63%)

Query:     1 MDPQIYG-------LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTXXX 53
             MD  IYG        +FFFLL   ++ +  H  T            VLVALLDS YT   
Sbjct:     1 MDRCIYGCSVITIFFSFFFLLNASALESGHHNITGSGQINSNS---VLVALLDSRYTELA 57

Query:    54 XXXXXXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113
                      QTLE+AVGRHNITIFAP+NEALER+LDP+FKRFLL+PGN+KSLQTLL+ HI
Sbjct:    58 ELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTLLLSHI 117

Query:   114 LPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS---KSSKRLIGSAEIFRPDDITRPDGV 169
             +P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRPDG+
Sbjct:   118 IPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGL 177

Query:   170 IHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXX--X 227
             IHGIERLL+PRSVQEDFNRRRNLRSISAVLP+GAPE+DPRT+RLKK              
Sbjct:   178 IHGIERLLIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPV 237

Query:   228 XXIYDXXXXXXXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
               I                     H+HFNG+ QVKDFIHTLLHYG    GY+   D++
Sbjct:   238 LPIESAMAPGPSLAPAPAPGPGGAHKHFNGDAQVKDFIHTLLHYG----GYNEMADIL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2039270 FLA16 "FASCICLIN-like arabinogalactan protein 16 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 158/288 (54%), Positives = 179/288 (62%)

Query:     1 MDPQIYGLAFFFLLV--VPSV-TALPHKTTXXXXXXXXXXXXVLVALLDSHYTXXXXXXX 57
             MD   YG   F LL+    S+ TALP                VLVALLDSHYT       
Sbjct:     1 MDSS-YGATKFLLLLFLTTSIATALPDNKPVPGQINSNS---VLVALLDSHYTELAELVE 56

Query:    58 XXXXXQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSR 117
                  QTLEEAVG+HNITIFAP+N+ALER LDP FK FLLEP N+KSLQ+LLMFHILP R
Sbjct:    57 KALLLQTLEEAVGKHNITIFAPRNDALERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKR 116

Query:   118 IGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLL 177
             I S  WP   S S  H TL ND +HL+   +   + SAEI RPDD+ RPDG+IHGIERLL
Sbjct:   117 ITSPQWP---SLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLL 173

Query:   178 VPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDXXXXX 237
             +PRSVQEDFNRRR+LRSISAV+P+GAPEVDPRTHRLKK              IYD     
Sbjct:   174 IPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSPAVPAGAPPVLPIYDAMSPG 233

Query:   238 XXXXXXXXXXXXXXHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
                             HFNG+ QVKDFIHTLLHYG    GY+   D++
Sbjct:   234 PSLAPAPAPGPGGPRGHFNGDAQVKDFIHTLLHYG----GYNEMADIL 277

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

TAIR|locus:2100564 FLA15 "FASCICLIN-like arabinogalactan protein 15 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 152/278 (54%), Positives = 175/278 (62%)

Query:     8 LAFFFLLVVPSVTALPHKTTXXXXXXXXXXXXVLVALLDSHYTXXXXXXXXXXXXQTLEE 67
             L FF LL +   TALP K              VLVALLDSHYT            QTLEE
Sbjct:     7 LLFFLLLTISITTALPDKP----GSGQINSNSVLVALLDSHYTELAELVEKALLLQTLEE 62

Query:    68 AVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEK 127
             AVG+HNITIFAP+N+ALE+ LDPEFK FLL+P N+KSLQ+LLMFHILP RI S   P   
Sbjct:    63 AVGQHNITIFAPRNDALEKNLDPEFKSFLLQPKNLKSLQSLLMFHILPKRITS---PQFS 119

Query:   128 SGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQEDFN 187
             S    H TL ND +H ++      + SAEI +PDD+TRPDG+IHGIERLL+PRSVQEDFN
Sbjct:   120 SAVVSHRTLSNDHLHFTNGK----VNSAEITKPDDLTRPDGIIHGIERLLIPRSVQEDFN 175

Query:   188 RRRNLRSISAVLPQGAPEVDPRTHRLKKXXXXXXXXXXXXXXIYDXXXXXXXXXXXXXXX 247
             RRR+LRSI+AVLP+GAPEVDPRTHRLKK              +YD               
Sbjct:   176 RRRSLRSIAAVLPEGAPEVDPRTHRLKKKPAPIPAGAPPVLPVYDAMSPGPSLAPAPAPG 235

Query:   248 XXXXHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVV 285
                   HFNGE QVKDFIHTLLHYG    GY+   D++
Sbjct:   236 PGGPRHHFNGEAQVKDFIHTLLHYG----GYNEMADIL 269

GO:0005576 "extracellular region" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

UNIPROTKB|F1NW88 F1NW88 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 134 (52.2 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 31/107 (28%), Positives = 57/107 (53%)

Query:    73 NITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRK 132
             N+T+  P  +A+E  +D + K F +  GN+    TLL +H+L       ++ +  S    
Sbjct:  1004 NLTVLVPSLQAIEN-MDEDEKDFWMSKGNIP---TLLKYHLLTGAYNFADFQNLSSSDTL 1059

Query:   133 HNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVP 179
               +L ++F+HLS ++    +  A I    DI   +G+IH I+++L+P
Sbjct:  1060 PTSLQSNFLHLSKENGNLTVEGAHIVT-GDIASTNGIIHVIDKVLIP 1105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.139   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      345       288   0.00087  115 3  11 22  0.39    34
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  193 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.33u 0.11s 21.44t   Elapsed:  00:00:01
  Total cpu time:  21.34u 0.11s 21.45t   Elapsed:  00:00:01
  Start:  Sat May 11 00:02:24 2013   End:  Sat May 11 00:02:25 2013

GO:0005540 "hyaluronic acid binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0030169 "low-density lipoprotein particle binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA

GO:0051636 "Gram-negative bacterial cell surface binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GR0	FLA17_ARATH	No assigned EC number	0.7191	0.8144	0.6135	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	FLA17	FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR); FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR (FLA17); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- cell adhesion; LOCATED IN- vacuole; EXPRESSED IN- guard cell; CONTAINS InterPro DOMAIN/s- FAS1 domain (InterPro-IPR000782); BEST Arabidopsis thaliana protein match is- FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) (TAIR-AT3G11700.1); Has 604 Blast hits to 583 proteins in 167 species- Archae - 4; Bacteria - 312; Metazoa - 34; Fungi - 16; Plants - 127; Viruses - 1; Other Eukaryotes - 110 (source- NCB [...] (458 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	FLA5	FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR); fasciclin-like arabinogalactan-prote [...] (278 aa)							•		0.716
	AT1G15190	unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomembrane system; EXP [...] (248 aa)							•		0.716
	FLA20	FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20); PUTATIVE FASCICLIN-LIKE ARABINOGALA [...] (424 aa)							•		0.679
	FLA21	FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR); FASCICLIN-LIKE ARABINOGALACTAN PRO [...] (353 aa)							•		0.679
	FLA14	FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR); fasciclin-like arabinogalactan-pro [...] (255 aa)							•		0.677
	FLA1	FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1); fasciclin-like arabinogalactan-protein 1 (Fla1) ; May [...] (424 aa)							•		0.675
	FLA3	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR); FASCICLIN-LIKE ARABINOGALACTAN PROTE [...] (280 aa)							•		0.659
	FLA8	FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8); FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 (FLA8 [...] (420 aa)							•		0.647
	FLA6	FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6); fasciclin-like arabinogalactan-protein 6 (Fla6) ; May [...] (247 aa)							•		0.641
	AGP5	AGP5 (ARABINOGALACTAN-PROTEIN 5); Encodes arabinogalactan-protein (AGP5). ; Proteoglycan that s [...] (133 aa)							•		0.599

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
pfam02469	123	pfam02469, Fasciclin, Fasciclin domain	3e-25
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	1e-10
COG2335	187	COG2335, COG2335, Secreted and surface protein con	6e-06

>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 47  SHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQ 106
             ++    L++ A L+ TL  + G    T+FAP +EA  + L      FLL+  + + L+
Sbjct: 1   PGFSTFVALLKAAGLVDTLNGSQG--PFTVFAPTDEAFAK-LPAGTLNFLLK--DKEQLK 55

Query: 107 TLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRP 166
            LL +H++P R+ S +  +         TL    + ++       +  A + + D     
Sbjct: 56  NLLKYHVVPGRLTSSDLKNG----GTLATLQGSKLRVNVTGGTVTVNGARVVQSDIEATN 111

Query: 167 DGVIHGIERLLVP 179
            GVIH I+++L+P
Sbjct: 112 -GVIHVIDKVLLP 123

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 75  TIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHN 134
           T+FAP +EA + +L P+    L +      L+ LL++H++P R+ S +  +         
Sbjct: 1   TVFAPTDEAFQ-KLPPDLNSLLAD-----KLKNLLLYHVVPGRLSSADLLNGG----TLP 50

Query: 135 TLWND--FVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPR 180
           TL      +  S  S    +  A I   D I   +GV+H I+R+L+P 
Sbjct: 51  TLAGSKLRITRSGGSGTVTVNGARIVEAD-IAATNGVVHVIDRVLLPP 97

Length = 97

>gnl|CDD|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 16  VPSVTALPHKTTSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNIT 75
           VP +     +T  ++ +    ++ V  A  +  +T L   ++ A L+ TL E       T
Sbjct: 28  VPDLANGTLETGRAAVKGN-RADIVESAANNPSFTTLVAALKAAGLVDTLNET---GPFT 83

Query: 76  IFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNT 135
           +FAP NEA   +L       LL+P N   L  +L +H++  +I +     + SGS K  T
Sbjct: 84  VFAPTNEAFA-KLPAGTLDALLKPENKPLLTKILTYHVVEGKITAA--DLKSSGSVK--T 138

Query: 136 LWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV 182
           +    + +        +  A +    DI   +GVIH I+++L+P   
Sbjct: 139 VQGADLKIKVTGGGVYVNDATVTIA-DINASNGVIHVIDKVLIPPMD 184

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
COG2335	187	Secreted and surface protein containing fasciclin-	99.96
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.91
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.9
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.87
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.18
COG2335	187	Secreted and surface protein containing fasciclin-	81.79

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=4.4e-29  Score=225.43  Aligned_cols=140  Identities=26%  Similarity=0.373  Sum_probs=131.9

Q ss_pred             CCCCCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccc
Q 019153           34 QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI  113 (345)
Q Consensus        34 ~~~~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHI  113 (345)
                      ....+|++.+.++++|++|..+++.++|.++|+   +.++||||||+|+||.+ |+.++.+.|+.|+|+..|.++|.|||
T Consensus        45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~---~~gp~TVFaPtn~AFa~-lp~~T~~~Ll~pen~~~L~~iLtYHV  120 (187)
T COG2335          45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLN---ETGPFTVFAPTNEAFAK-LPAGTLDALLKPENKPLLTKILTYHV  120 (187)
T ss_pred             cchhHHHHHHccCcchHHHHHHHHhhhhHHHhc---CCCCeEEecCCHHHHHh-CChhHHHHHhCccchhhhheeeEEEE
Confidence            456789999999999999999999999999999   78999999999999999 99999999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCCc
Q 019153          114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV  182 (345)
Q Consensus       114 Vpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPpsv  182 (345)
                      ++|+++.+++.....    ++|+.|..++|...+++++||+++|+..| |.++|||||+||+||+|+..
T Consensus       121 v~Gk~~~~~l~~~~~----v~t~~G~~~~i~~~~~~~~Vn~a~v~~~d-i~a~NgvIhvID~Vl~Pp~~  184 (187)
T COG2335         121 VEGKITAADLKSSGS----VKTVQGADLKIKVTGGGVYVNDATVTIAD-INASNGVIHVIDKVLIPPMD  184 (187)
T ss_pred             EcCcccHHHhhcccc----ceeecCceEEEEEcCCcEEEeeeEEEecc-EeccCcEEEEEeeeccCCCc
Confidence            999999999986544    88999999999998888999999999998 99999999999999999964

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.91  E-value=1.5e-24  Score=180.88  Aligned_cols=123  Identities=30%  Similarity=0.514  Sum_probs=104.2

Q ss_pred             CChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCCccccCCCCCC
Q 019153           47 SHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDE  126 (345)
Q Consensus        47 ~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg~~~s~dL~~~  126 (345)
                      |+||+|.++|++++|.+.|++  ..+.||||||+|+||++ +..+....+.+  +.+.++++|+|||+++.++.++|...
T Consensus         1 ~~~s~f~~~l~~~~l~~~l~~--~~~~~TvfaP~d~a~~~-~~~~~~~~~~~--~~~~l~~~l~~hiv~~~~~~~~l~~~   75 (128)
T PF02469_consen    1 PDLSTFSRLLEQAGLADLLND--SDGNYTVFAPTDDAFQK-LSQETNSSLAD--SKEQLKSLLKYHIVPGSITSSDLRNG   75 (128)
T ss_dssp             -TTHHHHHHHHHTTCHHHHGC--SSSSEEEEEE-HHHHHH-SHHHHHHHHHT--HHHHHHHHHHHTEEES---HCHHHCH
T ss_pred             CCHHHHHHHHHHcCCHHHHhc--CCCCEEEEEECHHHHHh-ccccccchhhh--hhhhHhhhhhhEEEcCceehhhhccc
Confidence            689999999999999999942  56899999999999999 76666666654  67899999999999999999999877


Q ss_pred             -CCCcceecc-cCCCeEEEEEc--CCeEEEee-eEEeecCceEcCCcEEEEeCCccCC
Q 019153          127 -KSGSRKHNT-LWNDFVHLSSK--SSKRLIGS-AEIFRPDDITRPDGVIHGIERLLVP  179 (345)
Q Consensus       127 -~~~~~~l~T-LsG~~L~Vs~~--~G~I~VN~-A~Vv~~DdI~asNGVIHvID~VLiP  179 (345)
                       .    .++| ++|+.+.|+..  ++.++||+ ++|+..| +.++||+||+||+||+|
T Consensus        76 ~~----~~~t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~-~~~~nG~ih~id~vL~P  128 (128)
T PF02469_consen   76 KQ----TLETLLNGQPLRVSSSPSNGTIYVNGKARIVKSD-IEASNGVIHIIDDVLIP  128 (128)
T ss_dssp             HE----EEEBSSTTCEEEEEEEGGTTEEEECCEEEESEEE-EEESSEEEEEESS-TSS
T ss_pred             cc----cceeccCCCEEEEEEEecCCceEecCceEEEeCC-EEeCCEEEEEECceECc
Confidence             3    3788 89999999986  78999999 9999998 99999999999999998

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.90  E-value=1.6e-24  Score=226.83  Aligned_cols=258  Identities=45%  Similarity=0.604  Sum_probs=220.3

Q ss_pred             CCCCCCCCCCHHHHHhcCCChHHHHHHHHHhCcHHHHHh------hhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCH
Q 019153           29 SSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEE------AVGRHNITIFAPKNEALERELDPEFKRFLLEPGNV  102 (345)
Q Consensus        29 ~s~~~~~~~nIv~vl~~d~~fS~F~~lLekagL~~~L~d------~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~  102 (345)
                      .+....+..+.+..+..+.........++++.+.+.+++      ..+++++|+|+|.|+||...++..+..++..+.|.
T Consensus        82 ~~~~~~i~~~~v~pa~lps~~~~~~~~v~~a~t~Q~~~n~~~~~~~~g~~~ftIFa~~neaw~~~~d~~v~~~le~~~n~  161 (682)
T KOG1437|consen   82 QPGTGKIETNAVFPALLPSRNNALAEGVEKALTLQVLENTASKLEAEGNKDFTIFAPSNEAWTNNLDSRVKSFLESPYNL  161 (682)
T ss_pred             CCcceEecccccccccCCchhhhhhhhhcceeEEEecccchhhhhhccCCceEEecccccchhcCCChhhhhhccccchH
Confidence            344567778888888888888888889999887766665      33789999999999999987888899999888999


Q ss_pred             HHHHHHHhccccCCc-cccCCCCCCCCCcceecccCCCeEEEEEcC----CeEEEeeeEEeecCceEcCCcEEEEeCCcc
Q 019153          103 KSLQTLLMFHILPSR-IGSRNWPDEKSGSRKHNTLWNDFVHLSSKS----SKRLIGSAEIFRPDDITRPDGVIHGIERLL  177 (345)
Q Consensus       103 ~~L~~LL~YHIVpg~-~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~----G~I~VN~A~Vv~~DdI~asNGVIHvID~VL  177 (345)
                      +.+++++.+|+++.+ +..+++.+.......+.++.++.+.....-    .+-.+|.+.++..+|+...+|+||.|++.+
T Consensus       162 d~~~~~l~~h~i~q~~v~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~t~~~Di~~~d~~I~~I~~~~  241 (682)
T KOG1437|consen  162 DSLNQLLRSHIINQRLVSSAQLPNKMIIPKMHRTLGNKELHYLNGIVTVNYKRLVNNDVITTNYDLLRIDGVIHTIGRLI  241 (682)
T ss_pred             HHHHHHHHhcccchhhccchhcccccccccccccCCCceEEeeccccceeccccccccccccccccccCCCceEeeeecc
Confidence            999999999999999 778888877654445677777766543321    222355555555555888899999999999


Q ss_pred             CCCCchHHHhhccccccccccCCCCCCCCCcccccccCCCCC--CCCCCCCCcc-------------ccccCCCCCCCCC
Q 019153          178 VPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAP--VPAGAPPILP-------------IYDAMAPGPSLAP  242 (345)
Q Consensus       178 iPpsv~~~f~~~r~L~si~av~P~gap~~d~~~~~l~~~~~~--~~~~~~~~~p-------------~~~~~~~~p~~~~  242 (345)
                      .|.++++|+.++....+++...|+.++.+|+|+|+..++...  ++.+.+|..+             |.++|.+|+++++
T Consensus       242 ~~~~~~~d~~~~~~~~~~t~~~~e~a~~~d~rt~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~s~~~  321 (682)
T KOG1437|consen  242 IPRIEQEDFLKYLSGASATVFLPELAPFVDPRTHLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDNMKLGPSLAP  321 (682)
T ss_pred             chhhhhccchhcccccceeeeccccccccccccccccCcchhhcccccCCCcccccccchhhhhhhhhcccccccccccc
Confidence            999999999999999999999999999999999999999776  6678999999             9999999999999


Q ss_pred             ----------CCCCCCCCCCCCCCChhhH-HHHHHH--HHhhcccCCCcCccccccccCCC
Q 019153          243 ----------APAPGPGGAHRHFNGERQV-KDFIHT--LLHYGQRNGGYSGELDVVSDGNG  290 (345)
Q Consensus       243 ----------~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~  290 (345)
                                ++|||++|.+|+++|..++ ||||+|  ++||+    |||+|+|+++++.+
T Consensus       322 ~~~r~~~~~~~~a~g~~g~~~~~ng~~~I~kd~i~~~~~lh~i----d~~l~p~~~~~l~~  378 (682)
T KOG1437|consen  322 GTVRLTGEGVAIAPGSSGERYHINGRAIIQKDFIHTNGLLHYI----DYVLEPDSLKNLMS  378 (682)
T ss_pred             cceeeccccccccccCCCceEEeecceeEEEeeeccceEEEEc----ccccCCchHHHHHH
Confidence                      9999999999999999999 999999  99999    99999999988877

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.87  E-value=6e-22  Score=159.27  Aligned_cols=97  Identities=31%  Similarity=0.569  Sum_probs=86.2

Q ss_pred             EEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCCccccCCCCCCCCCcceecccCCCeEEEEEcC--CeEEE
Q 019153           75 TIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKS--SKRLI  152 (345)
Q Consensus        75 TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~--G~I~V  152 (345)
                      |||||+|+||++ +..+.++.+..  +. .++++|+|||+++.++.++|..+..    ++|+.|+.+++++.+  +.+++
T Consensus         1 TvfaP~d~Af~~-~~~~~~~~l~~--~~-~l~~ll~~Hiv~~~~~~~~l~~~~~----~~Tl~g~~l~v~~~~~~~~i~i   72 (99)
T smart00554        1 TVFAPTDEAFQK-LPPGTLNSLLA--DP-KLKNLLLYHVVPGRLSSADLLNGGT----LPTLAGSKLRVTRSGDSGTVTV   72 (99)
T ss_pred             CEeCcCHHHHHh-cCHHHHHHHhC--CH-HHHHHHHhcEeCceEcHHHhccCCc----cccCCCCEEEEEEeCCCCeEEE
Confidence            899999999999 77766666653  33 8999999999999999999987543    889999999999966  78999


Q ss_pred             eeeEEeecCceEcCCcEEEEeCCccCCC
Q 019153          153 GSAEIFRPDDITRPDGVIHGIERLLVPR  180 (345)
Q Consensus       153 N~A~Vv~~DdI~asNGVIHvID~VLiPp  180 (345)
                      |+++|+++| +.++||+||+||+||+|+
T Consensus        73 n~~~v~~~d-i~~~nGvih~Id~vL~P~   99 (99)
T smart00554       73 NGARIVEAD-IAATNGVVHVIDRVLLPP   99 (99)
T ss_pred             cceEEEECC-EecCCeEEEEECceeCCC
Confidence            999999998 999999999999999996

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.18  E-value=5.6e-11  Score=125.64  Aligned_cols=136  Identities=23%  Similarity=0.277  Sum_probs=99.2

Q ss_pred             CCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCC
Q 019153           37 SNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPS  116 (345)
Q Consensus        37 ~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg  116 (345)
                      .++++.+.++..+|.+.++++..++.+.|.   ..+.||+|||||+||.+ ...+... +   .+...|+.+++||++++
T Consensus       508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~---~~~~~t~fvPt~ka~~~-~~~~~~~-~---~~~~~l~~~l~yH~v~~  579 (682)
T KOG1437|consen  508 VSLMEDLKTDGRISGTVQGLEGVLLPEELT---PEGNYTLFVPTNKAWQK-STKDEKS-L---FHKKALQDFLKYHLVPG  579 (682)
T ss_pred             ccHHHHHhhccchhhhHHhhhhcCChhhhc---cCCceEEEeeccccccc-CCcchhh-c---chHHHHHHHHHhccccc
Confidence            678899999999999999999999999997   67999999999999998 5443322 2   25678999999999998


Q ss_pred             ccc-cCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCCc
Q 019153          117 RIG-SRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV  182 (345)
Q Consensus       117 ~~~-s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPpsv  182 (345)
                      ... ...-....... ...+..|+.+.+.....+..+|..+++..| |...||++|+||.||.|+++
T Consensus       580 ~~~ls~~~~~~v~~~-~k~s~~~~~~~~~~~~~~~~vn~e~~~~~~-i~~~n~~~h~i~~vl~p~~l  644 (682)
T KOG1437|consen  580 QSRLSLGSSPYVMIQ-VKLSLRGDHLFFSLVNPRGDVNKERLVGID-IMGTNGVVHVIDLVLKPPDL  644 (682)
T ss_pred             eeeeecccccceeee-eeEEEecccEEeeeeccccceeeeeeeccc-eeeecceeEEEEEEcccCcc
Confidence            774 11111110000 011223333333333334456788899998 99999999999999999844

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=81.79  E-value=0.16  Score=46.82  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             ccccccCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcccCCCcCccccccccC
Q 019153          209 RTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDG  288 (345)
Q Consensus       209 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  288 (345)
                      .+..|+.++| +++    |+|+.+||+..|.       |+-......    |.|+.+.-+|.||+++|  ..|++-++..
T Consensus        72 Lv~~L~~~gp-~TV----FaPtn~AFa~lp~-------~T~~~Ll~p----en~~~L~~iLtYHVv~G--k~~~~~l~~~  133 (187)
T COG2335          72 LVDTLNETGP-FTV----FAPTNEAFAKLPA-------GTLDALLKP----ENKPLLTKILTYHVVEG--KITAADLKSS  133 (187)
T ss_pred             hHHHhcCCCC-eEE----ecCCHHHHHhCCh-------hHHHHHhCc----cchhhhheeeEEEEEcC--cccHHHhhcc
Confidence            5667777766 888    9999999999999       887777765    36888999999999999  8888888764


Q ss_pred             CC
Q 019153          289 NG  290 (345)
Q Consensus       289 ~~  290 (345)
                      .+
T Consensus       134 ~~  135 (187)
T COG2335         134 GS  135 (187)
T ss_pred             cc
Confidence            44

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	4e-13
2vxp_A	132	Transforming growth factor-beta-induced protein IG	1e-11
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	5e-11
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	1e-08
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137

 Score = 64.7 bits (158), Expect = 4e-13
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 42  VALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGN 101
            A     +T L    E A L+ TL+   G    T+FAP + A    L       LL+P N
Sbjct: 8   TATGAGSFTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFAA-LPEGTVEDLLKPEN 63

Query: 102 VKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPD 161
            + L  +L +H++P  + S     + +      T+    + ++ +   + +    I +PD
Sbjct: 64  KEKLTEILTYHVVPGEVMS----SDLTEGMTAETVEGGALTVTLEGGPK-VNGVSISQPD 118

Query: 162 DITRPDGVIHGIERLLVPRS 181
            +   +GVIH I+ +L+P +
Sbjct: 119 -VDASNGVIHVIDGVLMPGA 137

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 42  VALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGN 101
           V   D+ ++ L   ++ A L +TL         T+FAP NEA    L P  +  LL   +
Sbjct: 7   VLKGDNRFSMLVAAIQSAGLTETLN---REGVYTVFAPTNEAFRA-LPPRERSRLLG--D 60

Query: 102 VKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPD 161
            K L  +L +HI    + S           +  +L  D + +S K++   +    +  P 
Sbjct: 61  AKELANILKYHIGDEILVS----GGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEP- 115

Query: 162 DITRPDGVIHGIERLL 177
           DI   +GV+H I  +L
Sbjct: 116 DIMATNGVVHVITNVL 131

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 61.9 bits (150), Expect = 5e-11
 Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 12/148 (8%)

Query: 42  VALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALER--ELDPEFKRFLLEP 99
               D   ++  ++ + +     L         T F P+++  ++     P   + L   
Sbjct: 164 KLESDPMMSDTYKMGKFSHFNDQLNNTQR--RFTYFVPRDKGWQKTELDYPSAHKKLFMA 221

Query: 100 GNVKSLQTLLMFHILPSRIGSRNW---PDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAE 156
                 +++L  H+  S             +         + D + +  +          
Sbjct: 222 DFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIW 281

Query: 157 IFRPDDITRPD-----GVIHGIERLLVP 179
            ++  ++ RPD     G+IH I+  L+ 
Sbjct: 282 NYKKINVYRPDVECTNGIIHVIDYPLLE 309

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 26  TTSSSSQPQINSNSVLVALLDSHYTELAELVEKA--LLLQTLEEAVGRHNITIFAPKNEA 83
             + ++  Q   +    A  +    +  E++      +L  +        +TI AP NEA
Sbjct: 2   AAADTTVTQFLQSFKENAE-NGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEA 57

Query: 84  LERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKS-GSRKHNTLWND--- 139
                     R      +   ++ +L  HI+  R+       + +    +  T+ N+   
Sbjct: 58  WNSSNINNVLR------DRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFL 111

Query: 140 FVHLSSKSSKRLIGSAEIFRPDDITRPD-----GVIHGIERLLVP 179
           + ++  + S  +I          + + D     G +H I+ +L  
Sbjct: 112 YFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGV 156

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 39  SVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLE 98
           + L A L         LV+      TL         T+FAP N A  + L       L  
Sbjct: 41  TTLTAALSGQLNPQVNLVD------TLNSG----QYTVFAPTNAAFSK-LPASTIDELKT 89

Query: 99  PGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIF 158
             N   L ++L +H++  +           G+R+  TL    V ++ + +   +G+A++ 
Sbjct: 90  --NSSLLTSILTYHVVAGQTSP----ANVVGTRQ--TLQGASVTVTGQGNSLKVGNADVV 141

Query: 159 RPDDITRPDGVIHGIERLLVP 179
               ++  +  ++ I+ +L+P
Sbjct: 142 CGG-VSTANATVYMIDSVLMP 161

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 66/199 (33%)

Query: 24  HKTTSSSSQPQINSNSVL-------VALLDSHYTELAELVEKALLLQTLEEAVGRHN--- 73
           H     + + Q     +L       V   D    +  ++ +  L  + ++  +   +   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVS 62

Query: 74  -----ITIFAPKNE-----ALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNW 123
                      K E      +E  L   +K FL+ P   +  Q        PS       
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQ--------PSM------ 107

Query: 124 PDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSVQ 183
              +    + + L+ND                ++F   +++R       + + L      
Sbjct: 108 -MTRMYIEQRDRLYND---------------NQVFAKYNVSRLQ-PYLKLRQAL------ 144

Query: 184 EDFNRRRNLRSISAVLPQG 202
                   LR    VL  G
Sbjct: 145 ------LELRPAKNVLIDG 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.97
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.97
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.96
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.92
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.87

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.97  E-value=2e-32  Score=233.78  Aligned_cols=136  Identities=26%  Similarity=0.419  Sum_probs=125.5

Q ss_pred             CCCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccC
Q 019153           36 NSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILP  115 (345)
Q Consensus        36 ~~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVp  115 (345)
                      .+||++++..+++||+|.++|+++||.+.|+   +.++||||||+|+||++ ++.+.++.|+++++++.|+++|+|||++
T Consensus         2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~---~~~~~TvFAPtn~Af~~-l~~~~~~~l~~~~~~~~l~~lL~yHvv~   77 (137)
T 1w7d_A            2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLK---GDGPFTVFAPTDAAFAA-LPEGTVEDLLKPENKEKLTEILTYHVVP   77 (137)
T ss_dssp             CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHT---SSSCEEEECCCHHHHTT-STTTHHHHTTSHHHHHHHHHHHHHHEEE
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHc---CCCCEEEEEECHHHHHH-cCHhHHHHHhCcCCHHHHHHHHHhhEeC
Confidence            4689999999999999999999999999999   67899999999999999 8888888887666789999999999999


Q ss_pred             CccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCC
Q 019153          116 SRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRS  181 (345)
Q Consensus       116 g~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPps  181 (345)
                      +++++++|..+.    .++|++|+.|.|+..+| ++||+++|+.+| |.++|||||+||+||+|++
T Consensus        78 ~~~~~~~l~~~~----~~~tl~G~~l~v~~~~g-v~vn~a~v~~~d-i~~~NGvIHvID~VL~P~s  137 (137)
T 1w7d_A           78 GEVMSSDLTEGM----TAETVEGGALTVTLEGG-PKVNGVSISQPD-VDASNGVIHVIDGVLMPGA  137 (137)
T ss_dssp             SCCCTTTSCSSE----EEECTTSCEEEEECTTS-CEETTEECSBCC-CBCSSSEEEBCSSCCSSCC
T ss_pred             cEEcHHHhcCCC----eeeccCCceEEEEecCC-EEEeCcEEEECC-eecCCeEEEEECeeeCCCC
Confidence            999999998764    38899999999999888 999999999998 9999999999999999984

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.97  E-value=1.9e-30  Score=220.26  Aligned_cols=131  Identities=27%  Similarity=0.349  Sum_probs=120.5

Q ss_pred             CCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCC
Q 019153           37 SNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPS  116 (345)
Q Consensus        37 ~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg  116 (345)
                      +||++++..+++||+|.++|+++||.+.|+   +.++||||||+|+||++ ++++.++.|+.  +++.|+++|+|||+++
T Consensus         2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~---~~~~~TvFAPtn~Af~~-l~~~~~~~l~~--~~~~l~~iL~yHvv~~   75 (132)
T 2vxp_A            2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLN---REGVYTVFAPTNEAFRA-LPPRERSRLLG--DAKELANILKYHIGDE   75 (132)
T ss_dssp             CCHHHHHTTSTTCHHHHHHHHHHTCHHHHH---SSCCEEEEEECHHHHHH-SCHHHHHHHHT--CHHHHHHHHHHSBBSS
T ss_pred             ccHHHHHHcCCCHHHHHHHHHHcCcHHHHc---CCCCEEEEeECHHHHHh-hCHHHHHHHhc--CHHHHHHHHHhcCcCc
Confidence            589999999999999999999999999999   77999999999999999 99888888874  7899999999999999


Q ss_pred             ccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccC
Q 019153          117 RIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLV  178 (345)
Q Consensus       117 ~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLi  178 (345)
                      .+++.+|....    .++|++|+.|.|+..++.++||+++|+.+| |.++|||||+||+||+
T Consensus        76 ~~~~~~l~~~~----~~~tl~G~~l~v~~~~~~v~vn~a~v~~~d-i~a~NGvIHvID~VLl  132 (132)
T 2vxp_A           76 ILVSGGIGALV----RLKSLQGDKLEVSLKNNVVSVNKEPVAEPD-IMATNGVVHVITNVLQ  132 (132)
T ss_dssp             CCCSTTCSSCE----EEEBTTSSEEEEEEETTEEEESSCBEEEEE-EEETTEEEEEESSCC-
T ss_pred             eeehhhccCCc----eEecCCCCEEEEEEeCCEEEEeccEEEEcc-eecCCEEEEEECcEeC
Confidence            99888886543    488999999999998899999999999998 9999999999999985

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.96  E-value=3.1e-30  Score=227.18  Aligned_cols=136  Identities=21%  Similarity=0.319  Sum_probs=124.3

Q ss_pred             CCCCCCCHHHHHhcCCChHHHHHHHH-----HhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHH
Q 019153           32 QPQINSNSVLVALLDSHYTELAELVE-----KALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQ  106 (345)
Q Consensus        32 ~~~~~~nIv~vl~~d~~fS~F~~lLe-----kagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~  106 (345)
                      .+...+||+++|..+++||+|.++|+     +++|.+.|+   +.+ ||||||+|+||++ +..+.++.|++  +++.|+
T Consensus        23 ~g~~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~---~~g-~TvFAPtn~AF~~-l~~~~~~~L~~--~~~~L~   95 (163)
T 1nyo_A           23 QGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN---SGQ-YTVFAPTNAAFSK-LPASTIDELKT--NSSLLT   95 (163)
T ss_dssp             THHHHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT---SSS-EEECCBCHHHHHH-SCHHHHHHHTT--CSSHHH
T ss_pred             CCCCCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhC---CCC-cEEEEECHHHHHh-ccHHHHHHHhc--CHHHHH
Confidence            34577899999999999999999999     999999999   667 9999999999999 88888888874  567899


Q ss_pred             HHHhccccCCccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCC
Q 019153          107 TLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRS  181 (345)
Q Consensus       107 ~LL~YHIVpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPps  181 (345)
                      ++|+|||++++++.++|. +     .++|++|+.|+|+..++.++||+++|+.+| |.++|||||+||+||+|++
T Consensus        96 ~iL~yHvv~g~~~~~~l~-g-----~~~Tl~G~~l~v~~~~~~v~vn~a~V~~~d-i~a~NGvIHvID~VL~P~~  163 (163)
T 1nyo_A           96 SILTYHVVAGQTSPANVV-G-----TRQTLQGASVTVTGQGNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             HHHHHTEEESCCCTTTSC-E-----EEECTTSSEEEEEECSSCEEETTEECSSBC-CCCSSEEEBCBSSCCCCCC
T ss_pred             HHHHhceECCEEcHHHhC-C-----ccccCCCCEEEEEEECCEEEEeccEEEECc-eEcCCEEEEEECcEeCCCC
Confidence            999999999999999997 2     389999999999998889999999999998 9999999999999999974

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.92  E-value=5e-26  Score=218.16  Aligned_cols=215  Identities=13%  Similarity=0.167  Sum_probs=145.5

Q ss_pred             CCCCHHHHHh------cCCChHHHHHHHHHhC--cHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHH
Q 019153           35 INSNSVLVAL------LDSHYTELAELVEKAL--LLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQ  106 (345)
Q Consensus        35 ~~~nIv~vl~------~d~~fS~F~~lLekag--L~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~  106 (345)
                      ...||+++|.      .+++||+|.++|+++|  |.++|+   +.++||||||+|+||++ +.   .+.|+  .+++.|+
T Consensus         4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~---~~~~~TvFAPtn~Af~~-~~---~~~l~--~~~~~l~   74 (324)
T 1o70_A            4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEAWNS-SN---INNVL--RDRNKMR   74 (324)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTCSHHHHHHH---TCSSEEEEEECHHHHHH-TC---THHHH--TCHHHHH
T ss_pred             ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHc---CCCCeEEEEEChHhhhc-cc---Hhhhh--CCHHHHH
Confidence            3567888887      6789999999999999  999999   78999999999999998 43   23333  2788999


Q ss_pred             HHHhccccCCccccCCCCCCCC-CcceecccCCCe-EEEEEc----CCeEEEee----eEEeecCceEcCCcEEEEeCCc
Q 019153          107 TLLMFHILPSRIGSRNWPDEKS-GSRKHNTLWNDF-VHLSSK----SSKRLIGS----AEIFRPDDITRPDGVIHGIERL  176 (345)
Q Consensus       107 ~LL~YHIVpg~~~s~dL~~~~~-~~~~l~TLsG~~-L~Vs~~----~G~I~VN~----A~Vv~~DdI~asNGVIHvID~V  176 (345)
                      ++|+|||++++++.++|..... +...++|+.|+. +.++..    ++.+++|+    ++|+.+| |.++|||||+||+|
T Consensus        75 ~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~d-i~~~NGvIhvID~V  153 (324)
T 1o70_A           75 QILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD-VAQTNGYVHIIDHV  153 (324)
T ss_dssp             HHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEE-EECSSEEEEEESSC
T ss_pred             HHHHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEecc-ccccCcEEEEEchh
Confidence            9999999999999988876541 112488999886 666653    24688884    9999998 99999999999999


Q ss_pred             cCCCC--chHHHhhcccccccc-ccCCCCCCCCCcccccccCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCC
Q 019153          177 LVPRS--VQEDFNRRRNLRSIS-AVLPQGAPEVDPRTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHR  253 (345)
Q Consensus       177 LiPps--v~~~f~~~r~L~si~-av~P~gap~~d~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~  253 (345)
                      |+|+.  +.+.+.....+..+. ++.-.+      ....|....-+++.    |+|+.+||+-.+.--|   ++   -..
T Consensus       154 L~pp~~ti~~~l~~~~~fs~~~~~l~~~g------l~~~L~~~~~~~Tv----FAPtd~Af~~l~~~~~---~~---~~~  217 (324)
T 1o70_A          154 LGVPYTTVLGKLESDPMMSDTYKMGKFSH------FNDQLNNTQRRFTY----FVPRDKGWQKTELDYP---SA---HKK  217 (324)
T ss_dssp             TTSCCSCHHHHHHHCGGGHHHHHHTTTTT------TTGGGGCSSSEEEE----EEECHHHHHHHHHHCH---HH---HHH
T ss_pred             hhhchhhHHHHhhcCchHHHHHHHHHhhC------HHHHhCCCCCCeEE----EEeChHHHHhhhhhch---hH---HHH
Confidence            99975  556555444443332 232222      23455532334677    9999999965431000   00   001


Q ss_pred             CCCChhhHHHHHHHHHhhcccCCC
Q 019153          254 HFNGERQVKDFIHTLLHYGQRNGG  277 (345)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~  277 (345)
                      .+.  .+.++.++.||.||++.|+
T Consensus       218 ~l~--~~~~~~l~~iL~yHvv~~~  239 (324)
T 1o70_A          218 LFM--ADFSYHSKSILERHLAISD  239 (324)
T ss_dssp             HTS--GGGHHHHHHHHHTTEEEES
T ss_pred             Hhc--cCcHHHHHHHHHhcEeCCc
Confidence            111  1234689999999999883

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.87  E-value=4e-23  Score=197.96  Aligned_cols=140  Identities=16%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             CCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCC----HHHHHHhcCCCCHHHHHHHHhcc
Q 019153           37 SNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELD----PEFKRFLLEPGNVKSLQTLLMFH  112 (345)
Q Consensus        37 ~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~----~~~~~~Ll~p~n~~~L~~LL~YH  112 (345)
                      .|+.+.+..+++||+|.+++++++|.++|++  ..++||||||+|+||++ +.    .+..+.|+ ++..+.|+++|+||
T Consensus       159 ~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~--~~~~~TvFAPtd~Af~~-l~~~~~~~~~~~l~-~~~~~~l~~iL~yH  234 (324)
T 1o70_A          159 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNN--TQRRFTYFVPRDKGWQK-TELDYPSAHKKLFM-ADFSYHSKSILERH  234 (324)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC--SSSEEEEEEECHHHHHH-HHHHCHHHHHHHTS-GGGHHHHHHHHHTT
T ss_pred             hhHHHHhhcCchHHHHHHHHHhhCHHHHhCC--CCCCeEEEEeChHHHHh-hhhhchhHHHHHhc-cCcHHHHHHHHHhc
Confidence            5799999999999999999999999999983  36899999999999999 63    33344443 23345899999999


Q ss_pred             ccCC--ccccCCCCCCC--CCcceecccCCCeEEEEE--cCCeEEEe----eeEEeecCceEcCCcEEEEeCCccCCCCc
Q 019153          113 ILPS--RIGSRNWPDEK--SGSRKHNTLWNDFVHLSS--KSSKRLIG----SAEIFRPDDITRPDGVIHGIERLLVPRSV  182 (345)
Q Consensus       113 IVpg--~~~s~dL~~~~--~~~~~l~TLsG~~L~Vs~--~~G~I~VN----~A~Vv~~DdI~asNGVIHvID~VLiPpsv  182 (345)
                      |+++  .++.++|.+..  .+...++|++ +.+.|+.  .++.++||    +++|+.+| |.++|||||+||+||+|++.
T Consensus       235 vv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~~l~v~~~~~~~~v~v~~~~~~a~v~~~d-i~~~NGvIHvID~VL~P~~~  312 (324)
T 1o70_A          235 LAISDKEYTMKDLVKFSQESGSVILPTFR-DSLSIRVEEEAGRYVIIWNYKKINVYRPD-VECTNGIIHVIDYPLLEEKD  312 (324)
T ss_dssp             EEEESSCCCHHHHHHHHHHSSSEEEECSS-SEEEEEEEEETTEEEEEETTEEEEEEEEE-EEETTEEEEEESSCSCCTTT
T ss_pred             EeCCcceEcHHHHhhhccCCCeeeeeccC-CcEEEEEEecCCEEEEEecCceeEEEEcc-cccCCCeEEEeceeecCCcc
Confidence            9998  77767886432  1123478998 8888876  57889997    89999998 99999999999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	345
d1o70a2	157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	7e-12
d1nyoa_	163	b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobact	1e-10
d1o70a1	140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	5e-09

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.7 bits (146), Expect = 7e-12
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 46  DSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALER--ELDPEFKRFLLEPGNVK 103
           D   ++  ++ + +     L         T F P+++  ++     P   + L       
Sbjct: 10  DPMMSDTYKMGKFSHFNDQLNNTQR--RFTYFVPRDKGWQKTELDYPSAHKKLFMADFSY 67

Query: 104 SLQTLLMFHILPSRI---GSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRP 160
             +++L  H+  S             +         + D + +  +           ++ 
Sbjct: 68  HSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKK 127

Query: 161 DDITRPD-----GVIHGIERLLVPRS 181
            ++ RPD     G+IH I+  L+   
Sbjct: 128 INVYRPDVECTNGIIHVIDYPLLEEK 153

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 163

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 27  TSSSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALER 86
            ++S+ P++   + L A L         LV+      TL         T+FAP N A  +
Sbjct: 32  VAASNNPEL---TTLTAALSGQLNPQVNLVD------TLNSG----QYTVFAPTNAAFSK 78

Query: 87  ELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSK 146
            L       L    N   L ++L +H++  +    N            TL    V ++ +
Sbjct: 79  -LPASTIDELKT--NSSLLTSILTYHVVAGQTSPANV------VGTRQTLQGASVTVTGQ 129

Query: 147 SSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRS 181
            +   +G+A++     ++  +  ++ I+ +L+P +
Sbjct: 130 GNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA 163

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 22/146 (15%)

Query: 46  DSHYTELAELVEKA--LLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVK 103
           +    +  E++      +L  +        +TI AP NEA          R      +  
Sbjct: 3   NGALRKFYEVIMDNGGAVLDDINSL---TEVTILAPSNEAWNSSNINNVLR------DRN 53

Query: 104 SLQTLLMFHILPSRIGSRNWPDEK----------SGSRKHNTLWNDFVHLSSKSSKRLIG 153
            ++ +L  HI+  R+       +           + +             +  + +    
Sbjct: 54  KMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGV 113

Query: 154 SAEIFRPDDITRPDGVIHGIERLLVP 179
           +A + +  D+ + +G +H I+ +L  
Sbjct: 114 NATVIQA-DVAQTNGYVHIIDHVLGV 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.96
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.9
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.87

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=6.7e-30  Score=224.09  Aligned_cols=140  Identities=21%  Similarity=0.316  Sum_probs=123.9

Q ss_pred             CCCCCCCCCCCHHHHHhcCCChHHHHHHHH-----HhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCH
Q 019153           28 SSSSQPQINSNSVLVALLDSHYTELAELVE-----KALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNV  102 (345)
Q Consensus        28 ~~s~~~~~~~nIv~vl~~d~~fS~F~~lLe-----kagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~  102 (345)
                      +.+.++....++.+.+.++++||+|.++|+     +++|.+.|+   + ++||||||+|+||++ ++.+.++.|.+  ++
T Consensus        19 ~~~~~~~~~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~---~-gpfTvFAPtn~AF~~-l~~~~~~~l~~--~~   91 (163)
T d1nyoa_          19 PASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN---S-GQYTVFAPTNAAFSK-LPASTIDELKT--NS   91 (163)
T ss_dssp             TTSTTHHHHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT---S-SSEEECCBCHHHHHH-SCHHHHHHHTT--CS
T ss_pred             CCcccccccchHHHHHhcCCchHHHHHHHhhccccccchhHhhc---C-CCeEEEEECcHHHHh-cCHHHHHhhhh--hH
Confidence            333344556789999999999999999998     479999998   3 899999999999999 99988888864  56


Q ss_pred             HHHHHHHhccccCCccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCC
Q 019153          103 KSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRS  181 (345)
Q Consensus       103 ~~L~~LL~YHIVpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPps  181 (345)
                      +.|+++|+|||++++++.+++...      ++|++|+.++|++.++.++||+++|+..| |.++|||||+||+||+||+
T Consensus        92 ~~L~~iL~yHVv~g~~~~~~l~~~------~~Tl~G~~l~v~~~~~~i~v~~a~Vv~~d-i~a~NGvIHvID~VLlPPa  163 (163)
T d1nyoa_          92 SLLTSILTYHVVAGQTSPANVVGT------RQTLQGASVTVTGQGNSLKVGNADVVCGG-VSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             SHHHHHHHHTEEESCCCTTTSCEE------EECTTSSEEEEEECSSCEEETTEECSSBC-CCCSSEEEBCBSSCCCCCC
T ss_pred             HHHHHhhhhhhhhhhhhhhhhhhh------hhhccCcceeEEecCCEEEEeceEEEECC-eecCCcEEEEECccccCCC
Confidence            789999999999999999988532      68999999999999999999999999998 9999999999999999985

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=6.9e-25  Score=187.07  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             CCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHH---HHHhcCCCCHHHHHHHHhccc
Q 019153           37 SNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEF---KRFLLEPGNVKSLQTLLMFHI  113 (345)
Q Consensus        37 ~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~---~~~Ll~p~n~~~L~~LL~YHI  113 (345)
                      +||+++++.+++||.|.++++.++|.+.|++  ..++||||||+|+||++ +....   ....+.+.+++.|+++|+|||
T Consensus         1 ~Ti~~~l~~~p~ls~~~~~~~~s~l~~~L~~--~~~~~TvFaPtn~Af~~-l~~~~~~~~~~~~~~~~~~~l~~il~~Hi   77 (157)
T d1o70a2           1 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNN--TQRRFTYFVPRDKGWQK-TELDYPSAHKKLFMADFSYHSKSILERHL   77 (157)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC--SSSEEEEEEECHHHHHH-HHHHCHHHHHHHTSGGGHHHHHHHHHTTE
T ss_pred             CcHHHHHHhCccHHHHHHHHHhCCHHHHHhC--CCCceEEEecCHHHHHH-hhhhccchhhhhcCcccHHHHHHHheeEE
Confidence            4799999999999999999999999999984  35789999999999999 54332   223334457889999999999


Q ss_pred             cCCccccCCCCCC----CCCcceecccCCCeE-EEEEcCCeEEE----eeeEEeecCceEcCCcEEEEeCCccCCCC
Q 019153          114 LPSRIGSRNWPDE----KSGSRKHNTLWNDFV-HLSSKSSKRLI----GSAEIFRPDDITRPDGVIHGIERLLVPRS  181 (345)
Q Consensus       114 Vpg~~~s~dL~~~----~~~~~~l~TLsG~~L-~Vs~~~G~I~V----N~A~Vv~~DdI~asNGVIHvID~VLiPps  181 (345)
                      +++.....+....    ..+.....|+.++.. .+...++.+.+    |.++|+++| |.++|||||+||+||+|++
T Consensus        78 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~D-i~a~NGviHvID~VLlp~~  153 (157)
T d1o70a2          78 AISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPD-VECTNGIIHVIDYPLLEEK  153 (157)
T ss_dssp             EEESSCCCHHHHHHHHHHSSSEEEECSSSEEEEEEEEETTEEEEEETTEEEEEEEEE-EEETTEEEEEESSCSCCTT
T ss_pred             ecccccchhhhhhhhhccCCceeEEecCCcEEEEEEcCCcEEEEecCCccceEEECC-EecCCeEEEEECceecCCC
Confidence            9987654332110    011223456655433 33445665554    679999998 9999999999999999963

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=6.6e-23  Score=171.04  Aligned_cols=126  Identities=17%  Similarity=0.287  Sum_probs=97.8

Q ss_pred             cCCChHHHHHHHHHhC--cHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCCccccCC
Q 019153           45 LDSHYTELAELVEKAL--LLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRN  122 (345)
Q Consensus        45 ~d~~fS~F~~lLekag--L~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg~~~s~d  122 (345)
                      ++++|++|.++|+++|  +.+.|+   +.+++|||||+|+||++ +....   +.  .+.+.|+.+|+|||+++.++..+
T Consensus         2 ~~~~~~~f~~~i~~~g~~~~~~l~---~~~~~TvFAPtn~Af~~-~~~~~---~~--~~~~~l~~~l~yHiv~~~~~~~~   72 (140)
T d1o70a1           2 ENGALRKFYEVIMDNGGAVLDDIN---SLTEVTILAPSNEAWNS-SNINN---VL--RDRNKMRQILNMHIIKDRLNVDK   72 (140)
T ss_dssp             CHHHHHHHHHHHHHTCSHHHHHHH---TCSSEEEEEECHHHHHH-TCTHH---HH--TCHHHHHHHHHHTEESSCCCHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECHHHHhc-CChhh---hc--CCHHHHHHHHHhhccCCeEEHHH
Confidence            4567999999999986  778888   67899999999999998 54432   22  26788999999999999998888


Q ss_pred             CCCCCC-CcceecccCCCeEEE-EEc----CCeEEE----eeeEEeecCceEcCCcEEEEeCCccCCC
Q 019153          123 WPDEKS-GSRKHNTLWNDFVHL-SSK----SSKRLI----GSAEIFRPDDITRPDGVIHGIERLLVPR  180 (345)
Q Consensus       123 L~~~~~-~~~~l~TLsG~~L~V-s~~----~G~I~V----N~A~Vv~~DdI~asNGVIHvID~VLiPp  180 (345)
                      |..... ....+.|+.|..+.. ...    +..+.+    +.++|+++| |.++|||||+||+||.||
T Consensus        73 l~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~D-i~~~NGvIH~ID~VL~~P  139 (140)
T d1o70a1          73 IRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQAD-VAQTNGYVHIIDHVLGVP  139 (140)
T ss_dssp             HHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEE-EECSSEEEEEESSCTTSC
T ss_pred             HhcCcccCceEeeecCCCceEEEEEeccceeEEEEecCCcceEEEEeCC-EecCCeEEEEECCccCCc
Confidence            865432 123467887775543 222    134444    458999998 999999999999999987