Citrus Sinensis ID: 019159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Secondary Structure (PSIPRED)
ccccccEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccEEEEEccEEEEHHHHHHHHHHHHHHHHHHcccccHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEcccccccccccccccccHHccccccccHHHHHHcccccccccEEEccccccccccccccEEEcccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEEEEcccEEHHHHHHHHHHHHHHHHHHEHccccEEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFklfaseeddtdlsdnfivktcqrfipvttyydgnrfftnqdgmrkaTPLLLTVAVIELSDIafavdsipavfgvtrdpfivFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN**
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH****************EQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL*************FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKG***************************S************GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSINLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.620	0.670	0.448	3e-49
P60067	320	Inner membrane protein al	yes	no	0.646	0.696	0.396	3e-42
Q8FDE1	321	Inner membrane protein al	yes	no	0.539	0.579	0.438	6e-42
P42601	321	Inner membrane protein al	N/A	no	0.539	0.579	0.438	7e-42
Q83Q35	320	Inner membrane protein al	yes	no	0.539	0.581	0.438	7e-42
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.539	0.579	0.438	7e-42
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.539	0.577	0.449	1e-41
Q8ZLX2	322	Inner membrane protein al	yes	no	0.539	0.577	0.449	1e-41
Q92GA4	301	Uncharacterized membrane	yes	no	0.643	0.737	0.355	9e-39
Q1RKF1	302	Uncharacterized membrane	yes	no	0.643	0.735	0.337	5e-37

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 140/214 (65%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  KLF     + +  +  +
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVKLFLQRNKEDNPEEGAL 167

Query: 242 VKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRD 301
           ++  +R IP T  +DG+ FFT ++G + ATPLL+ + ++E SDI FA+DSIPA+F VT D
Sbjct: 168 MRLARRTIPSTPNFDGHHFFTVENGRKLATPLLMALLLVEASDILFALDSIPAIFAVTTD 227

Query: 302 PFIVFSSNLFAILGLRSLFTLISEGMADLEYLQV 335
           PFIVF+SN+FAILGLRS+F +++  +    YL+V
Sbjct: 228 PFIVFTSNIFAILGLRSMFFMLAGAVEKFSYLKV 261

Myxococcus xanthus (taxid: 34)

>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=alx PE=3 SV=1

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 140/232 (60%), Gaps = 9/232 (3%)

Query: 106 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSL 157
           R+ E   S+  +       VS ++ F LG        VG     S+   F  GY+LE++L
Sbjct: 30  RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKAL 89

Query: 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAG 217
           +VDN+FV++++F YF +P   Q RVL YG+ GAIV R  +I  G+  + +F  +  +   
Sbjct: 90  AVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSWILYLFGL 149

Query: 218 ILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTV 277
            LL +  K+   +EDD+ + D   V+  +  I +T    G RFF  + G+  ATPL+L +
Sbjct: 150 FLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNLHGERFFVKEKGLLYATPLILVL 209

Query: 278 AVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMAD 329
            ++E+SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++ G+A+
Sbjct: 210 ILVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLA-GVAE 260

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           ++ G+A+
Sbjct: 255 LA-GVAE 260

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           ++ G+A+
Sbjct: 255 LA-GVAE 260

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           ++ G+A+
Sbjct: 255 LA-GVAE 260

Shigella flexneri (taxid: 623)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           ++ G+A+
Sbjct: 255 LA-GVAE 260

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           +S G+A+
Sbjct: 255 LS-GVAE 260

Salmonella typhi (taxid: 90370)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 128/187 (68%), Gaps = 1/187 (0%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
             + +FE +  V    LLF+  K+  ++ED++ + +  +V+  +  + +T   +   FF 
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFV 194

Query: 263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
            ++G+  ATPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct: 195 RKNGLLYATPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query: 323 ISEGMAD 329
           +S G+A+
Sbjct: 255 LS-GVAE 260

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 138/222 (62%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ +++I K+  + + +T   +GN+F   ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYIYKSIIKNLNITPNLEGNKFIVKRNNKLYCTPLFISLVLIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++
Sbjct: 209 PAIFAITNDVYIIYTSNIFAILGLRALFFCLAEIVERFSYIK 250

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|Q1RKF1|Y082_RICBR Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0082 PE=3 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 138/222 (62%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  S+    F  + +  FG+ + +  GA    E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKQSLLFSLFYFTISCLFGIYIYYNMGADSTREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232
           K+P  YQ+RVL +GI G I FR  +I  G   + +F  +  + A IL+ +  K F     
Sbjct: 89  KIPQKYQHRVLFFGIIGVIAFRAVMIYGGIILINKFSWLLYIFAVILIATGVKTFYVSHK 148

Query: 233 DTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSI 292
             D+ ++++ K+  +++ VT   +G++FF  ++     TPL +++ +IE  D+ FA+DSI
Sbjct: 149 TFDIQNSYLYKSIIKYLNVTPNLEGDKFFVTRNKKLYVTPLFISLILIEAIDLVFAIDSI 208

Query: 293 PAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           PA+F +T D +I+++SN+FAILGLR+LF  ++E +    Y++
Sbjct: 209 PAIFAITNDAYIIYTSNIFAILGLRALFFCLAEIVERFSYIK 250

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
224068600	372	predicted protein [Populus trichocarpa]	0.944	0.876	0.699	1e-126
356536907	363	PREDICTED: uncharacterized membrane prot	0.907	0.862	0.668	1e-112
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.930	0.858	0.660	1e-108
356548192	352	PREDICTED: uncharacterized membrane prot	0.875	0.857	0.653	1e-108
449448697	362	PREDICTED: uncharacterized membrane prot	0.881	0.839	0.618	1e-108
18416778	384	TerC integral membrane domain-containing	0.962	0.864	0.634	1e-107
225439789	389	PREDICTED: uncharacterized membrane prot	0.913	0.809	0.639	1e-107
21592518	384	transmembrane transport protein-like pro	0.962	0.864	0.631	1e-106
9759380	344	unnamed protein product [Arabidopsis tha	0.8	0.802	0.714	1e-105
297741505	365	unnamed protein product [Vitis vinifera]	0.849	0.802	0.628	1e-103

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 277/343 (80%), Gaps = 17/343 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS 237
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFKLFA+EEDD+DLS
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFKLFATEEDDSDLS 226

Query: 238 DNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 297
           DNFIVKTCQRFIPVT+ YDGN+F T +DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFG
Sbjct: 227 DNFIVKTCQRFIPVTSNYDGNKFITREDGLWKATPLLLTVAVIELSDIAFAVDSIPAVFG 286

Query: 298 VTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWV 340
           VTRDPFIVFSSNLFAILGLRSL+TLISEGMADLEYLQ  +  V
Sbjct: 287 VTRDPFIVFSSNLFAILGLRSLYTLISEGMADLEYLQPSIAIV 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/335 (66%), Positives = 260/335 (77%), Gaps = 22/335 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFKLFASEED++DLSDN
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFKLFASEEDESDLSDN 219

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 220 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 279

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQ
Sbjct: 280 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQ 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/336 (66%), Positives = 256/336 (76%), Gaps = 15/336 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L         +P +             F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL--------TIPVVPPDFRARGWTESRFSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSD 238
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDLSD
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDLSD 227

Query: 239 NFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV 298
           NFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGV
Sbjct: 228 NFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVFGV 287

Query: 299 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           TRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQ
Sbjct: 288 TRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQ 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/335 (65%), Positives = 255/335 (76%), Gaps = 33/335 (9%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDN 239
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS KLFASEED++DLSDN
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSKLFASEEDESDLSDN 208

Query: 240 FIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 299
           F+VKTCQ+FIPVTTYYDGNRF TN DG+ KATPLLLTVAVIELSDIAFAVDSIPAVFGVT
Sbjct: 209 FVVKTCQKFIPVTTYYDGNRFITNLDGVWKATPLLLTVAVIELSDIAFAVDSIPAVFGVT 268

Query: 300 RDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           RDPF+VF+SNLFAILGLRSLF +ISEGM++L+YLQ
Sbjct: 269 RDPFVVFTSNLFAILGLRSLFLIISEGMSELKYLQ 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/341 (61%), Positives = 250/341 (73%), Gaps = 37/341 (10%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS-EEDD 233
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+LFAS EEDD
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQLFASNEEDD 212

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
            DLSDNF+VKTCQ+ IPVT  YDG+RFFT Q+G++KATPLLLT+AVIELSDIAFAVDSIP
Sbjct: 213 GDLSDNFVVKTCQQLIPVTATYDGDRFFTLQEGVKKATPLLLTIAVIELSDIAFAVDSIP 272

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           AVFGVTRDPFIV +SN FAILGLRSLF L+++GM++LEYLQ
Sbjct: 273 AVFGVTRDPFIVITSNFFAILGLRSLFILVADGMSELEYLQ 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416778|ref|NP_568257.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana] gi|332004383|gb|AED91766.1| TerC integral membrane domain-containing protein [Arabidopsis thaliana]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/347 (63%), Positives = 260/347 (74%), Gaps = 15/347 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWV 340
           AVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQ  +  V
Sbjct: 293 AVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVV 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/347 (63%), Positives = 256/347 (73%), Gaps = 32/347 (9%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQ 107
           +V +    + SPL AC++ T+Q ED LSTSE  R S+      N +  H+  +  + E  
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEI 113

Query: 108 IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167
            +G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVL
Sbjct: 114 TQGPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 173

Query: 168 IFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227
           IFKYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLF
Sbjct: 174 IFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLF 233

Query: 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAF 287
           A++ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAF
Sbjct: 234 AADEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAF 293

Query: 288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           AVDSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQ
Sbjct: 294 AVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQ 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/347 (63%), Positives = 259/347 (74%), Gaps = 15/347 (4%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+   S         H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDD
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDD 232

Query: 234 TDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIP 293
           TDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIP
Sbjct: 233 TDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIP 292

Query: 294 AVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWV 340
           AVFGVTRDPFI  +SNLFAILGLRSL+TLISEGM +LEYLQ  +  V
Sbjct: 293 AVFGVTRDPFIGLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVV 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759380|dbj|BAB10031.1| unnamed protein product [Arabidopsis thaliana]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 234/284 (82%), Gaps = 8/284 (2%)

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEG 110
           NRR  + P +AC++G +QED+   S         H+ND  + +  +    +    +  + 
Sbjct: 14  NRRLSHLPPIACSRGIDQEDEEKESR----ELLPHKNDENATTSRSSSSVDSGGLKDYQQ 69

Query: 111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
            E+Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FK
Sbjct: 70  EETYKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFK 129

Query: 171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230
           YFKVP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASE
Sbjct: 130 YFKVPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASE 189

Query: 231 EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVD 290
           EDDTDLSDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVD
Sbjct: 190 EDDTDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVD 249

Query: 291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           SIPAVFGVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQ
Sbjct: 250 SIPAVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQ 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741505|emb|CBI32637.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/345 (62%), Positives = 247/345 (71%), Gaps = 52/345 (15%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIE 109
           +V +    + SPL AC++ T+Q ED LSTS                       + E   +
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTS----------------------GNPEEITQ 91

Query: 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF 169
           G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVLIF
Sbjct: 92  GPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIF 151

Query: 170 KYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229
           KYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFKLFA+
Sbjct: 152 KYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFKLFAA 211

Query: 230 EEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAV 289
           +ED+TDLS+NF+VKTCQ+FIPVT  YDGN F T QDG+ KATPLLLTV VIELSDIAFAV
Sbjct: 212 DEDETDLSNNFVVKTCQKFIPVTANYDGNLFVTIQDGVWKATPLLLTVVVIELSDIAFAV 271

Query: 290 DSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
           DSIPAVFGVTRDPFIVF+SNLFAILGLRSL+TLISE M++LEYLQ
Sbjct: 272 DSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMSELEYLQ 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.962	0.864	0.653	1.9e-106
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.657	0.729	0.445	8.8e-47
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.657	0.729	0.445	8.8e-47
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.660	0.726	0.422	1.2e-44
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.660	0.726	0.422	1.2e-44
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.582	0.626	0.420	7.5e-41
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.628	0.667	0.392	3.4e-38
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.628	0.667	0.392	3.4e-38
UNIPROTKB|Q8E9J8	325	SO_4279 "Tellurium ion resista	0.628	0.667	0.392	4.3e-38
TIGR_CMR|SO_4279	325	SO_4279 "membrane protein, put	0.628	0.667	0.392	4.3e-38

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 223/341 (65%), Positives = 262/341 (76%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFKLFASEEDDTDL
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTDL 235

Query:   237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
             SDNFIVKTCQRFIPVT+ YDGNRFFT  DG+ KATPLLLTVAVIELSDIAFAVDSIPAVF
Sbjct:   236 SDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAVF 295

Query:   297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKV 337
             GVTRDPFIV +SNLFAILGLRSL+TLISEGM +LEYLQ  +
Sbjct:   296 GVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSI 336

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 103/231 (44%), Positives = 153/231 (66%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKV 337
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL++ V
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGV 258

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 103/231 (44%), Positives = 153/231 (66%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK+
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFKM 147

Query:   227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIA 286
                 E+  +   N IV+  ++ +P+T     +RFF  + G+R ATPL L + ++E SD+ 
Sbjct:   148 AFGGEEKIEPEKNPIVRLVRKLVPITKRIRDDRFFIKKGGVRAATPLFLALVMVESSDLI 207

Query:   287 FAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKV 337
             FAVDSIPAV  V+RDPFIV++SN+FAI+GLRSL+ L++  M    YL++ V
Sbjct:   208 FAVDSIPAVLAVSRDPFIVYTSNVFAIMGLRSLYYLLANVMEMFVYLKLGV 258

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 98/232 (42%), Positives = 152/232 (65%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWV 340
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  + ++
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFI 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 98/232 (42%), Positives = 152/232 (65%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL-F-A 228
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K+ F A
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASKMAFGA 150

Query:   229 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 288
             SEE D D   N +V+  ++ +P+T    G+ FFT + G+  A+PL + + V+E SD+ FA
Sbjct:   151 SEEMDPD--KNLMVRLARKVLPMTRKIRGDWFFTRRLGLWVASPLFMVLLVVESSDLVFA 208

Query:   289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWV 340
             +DSIPA+F +T DPFIV +SN+FAI+GLR+L+ L++E M    YL+  + ++
Sbjct:   209 LDSIPAIFAITLDPFIVLTSNVFAIMGLRALYFLLAEVMGMFAYLKYGISFI 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 87/207 (42%), Positives = 138/207 (66%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 262
               + +F+ +  +    LLF+  K+  + ED++ + D  +V+  +  + +T   D   FF 
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFV 194

Query:   263 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 322
              ++G+  ATPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L
Sbjct:   195 RKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFL 254

Query:   323 ISEGMAD----LEY-LQVKVYWVSINL 344
             ++ G+A+    L+Y L V + ++ I +
Sbjct:   255 LA-GVAERFSMLKYGLAVILVFIGIKM 280

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 88/224 (39%), Positives = 141/224 (62%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLK 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 88/224 (39%), Positives = 141/224 (62%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKMLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLK 268

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8E9J8 SO_4279 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 88/224 (39%), Positives = 141/224 (62%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLK 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4279 SO_4279 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 88/224 (39%), Positives = 141/224 (62%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFKLFASEEDDTD 235
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K+  S ++  D
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIKVLFSNDEHGD 164

Query:   236 LSDNFIVKTCQRFIPVTTYYDGNRFFTNQDG--MRK---ATPLLLTVAVIELSDIAFAVD 290
             + DN   K  +  +  T      +F+   +   + K   ATPL L + ++E +D+ FAVD
Sbjct:   165 IQDNKFYKWLRSKMRFTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVD 224

Query:   291 SIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQ 334
             SIPA+F +T+DPFIV++SN+FAILGLR+L+  ++  +   EYL+
Sbjct:   225 SIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLK 268

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_601243.1	annotation not avaliable (374 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_900032.1	annotation not avaliable (176 aa)	•								0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	1e-91
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	7e-52
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	7e-41
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	3e-13

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  275 bits (706), Expect = 1e-91
 Identities = 103/217 (47%), Positives = 145/217 (66%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDL 236
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K+    +++ D 
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDP 154

Query: 237 SDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVF 296
            +N +V+  +R +PVT  Y G+RFF  ++G R ATPL L + ++E +D+ FAVDSIPA+F
Sbjct: 155 ENNPLVRLVRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIF 214

Query: 297 GVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYL 333
            VT+DPFIVF+SN+FAILGLR+L+ L++  +    YL
Sbjct: 215 AVTQDPFIVFTSNIFAILGLRALYFLLAGLLERFHYL 251

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score =  169 bits (431), Expect = 7e-52
 Identities = 76/186 (40%), Positives = 111/186 (59%), Gaps = 21/186 (11%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGM 267
           F+ + L+    LL+++ KL    E+D +  +N IV+  ++ +PVT+              
Sbjct: 59  FDWILLIGGAFLLYTAIKLLRENEEDDE--ENKIVRELKKVLPVTSSS------------ 104

Query: 268 RKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGM 327
                L L V  IEL+D+ F++DS+PA  G+T DPFIV + N+FAILGLR L  L+++ +
Sbjct: 105 -----LWLAVIQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAKLI 159

Query: 328 ADLEYL 333
               YL
Sbjct: 160 ERFPYL 165

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score =  143 bits (363), Expect = 7e-41
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 13/180 (7%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQD 265
              + +  +    LL+   KL          +             +    +G  FF N  
Sbjct: 77  TLTQPLLYIFGLYLLWRDIKLLLGGLFLLFKA----------TKELHERLEGEEFFVNGK 126

Query: 266 GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISE 325
             +KATP    +  IEL+D+ F++DS+ A  G+   PF++ ++ +FAIL +R    L++ 
Sbjct: 127 L-KKATPFWGAIIQIELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR 185

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 28/166 (16%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKAT 271
             + A  LL+ + K F  ++   +  +    K    F                       
Sbjct: 59  KAIGALYLLYLAIKHFRKKKKGKEDEEAEKKKAHSGFWR--------------------- 97

Query: 272 PLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLR 317
               TV  +EL DIAF+VDSI A   ++   ++VF   +  IL +R
Sbjct: 98  ----TVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMR 139

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
COG0861	254	TerC Membrane protein TerC, possibly involved in t	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	100.0
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	100.0
PRK14013	338	hypothetical protein; Provisional	100.0
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	100.0
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	100.0
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	99.95
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.15
PF01914	203	MarC: MarC family integral membrane protein; Inter	97.08
PRK10739	197	putative antibiotic transporter; Provisional	96.89
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.89
PRK10995	221	inner membrane protein; Provisional	96.86
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	96.81
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	96.77
COG1971	190	Predicted membrane protein [Function unknown]	96.76
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	96.62
PRK11111	214	hypothetical protein; Provisional	96.27
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	96.19
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.06
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	96.04
PRK11469	188	hypothetical protein; Provisional	95.71
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	94.1
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	94.05
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	94.03
PRK10229	206	threonine efflux system; Provisional	93.45
PRK09304	207	arginine exporter protein; Provisional	93.35
TIGR00948	177	2a75 L-lysine exporter.	92.97
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	92.02
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	90.91
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	90.72
PRK10958	212	leucine export protein LeuE; Provisional	90.48
COG2119	190	Predicted membrane protein [Function unknown]	88.75
COG1279	202	Lysine efflux permease [General function predictio	85.48
PRK11469	188	hypothetical protein; Provisional	82.83
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	81.64

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=4.8e-71  Score=531.82  Aligned_cols=234  Identities=45%  Similarity=0.781  Sum_probs=229.1

Q ss_pred             ccchhhhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHH
Q 019159          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (345)
Q Consensus       110 ~~~~~k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlg  189 (345)
                      ++.+.|||..||++|+++|++||+++|++.|++.+.||+|||++|++||+||+|||++++++|++|+++|||+|+||++|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccc
Q 019159          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK  269 (345)
Q Consensus       190 AvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~  269 (345)
                      |++||++|+++|++++++|+|++++||+||+|+|+|++++++||+|+++|+.+|++||++|++++|+|++|++++||++.
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~  187 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY  187 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence            99999999999999999999999999999999999999988777778889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       270 aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~  343 (345)
                      +||++.++++||++|++||+|||||++|+|+||++|++||+||++|+|++|+++++++||||||||+++++|.+
T Consensus       188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~f  261 (302)
T TIGR03718       188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVF  261 (302)
T ss_pred             cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.4e-46  Score=349.67  Aligned_cols=199  Identities=25%  Similarity=0.382  Sum_probs=177.1

Q ss_pred             HHHHHHH--HhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019159          131 FGLGVGF--IEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF  208 (345)
Q Consensus       131 Fg~~v~~--~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f  208 (345)
                      |+...|+  ...+..|.+++|++++|++||+||++|+++++++  +|++||||+|+||+.+|++||+++++.++++++.+
T Consensus         2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~   79 (254)
T COG0861           2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT   79 (254)
T ss_pred             chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444443  3456677899999999999999999999999996  89999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCcc-ccchHHHHHHHHHHHHHHh
Q 019159          209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAF  287 (345)
Q Consensus       209 ~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~-~aTpl~~vvl~IE~~DlvF  287 (345)
                      +|++++||.+|+|+++||+.+++++.       .|+.++..   ++++|++++.  +++. ..||+|.++.+||++|++|
T Consensus        80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vF  147 (254)
T COG0861          80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVF  147 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999875543       23344443   6788888876  4443 7899999999999999999


Q ss_pred             hcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       288 SlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~  343 (345)
                      |+|||||++|+|+|+++|++|+++|+++||++|+.+++++||||+++|+++++|.+
T Consensus       148 SlDSV~Aa~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~  203 (254)
T COG0861         148 SLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLF  203 (254)
T ss_pred             hhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998875

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=100.00  E-value=2e-45  Score=332.22  Aligned_cols=175  Identities=35%  Similarity=0.518  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 019159          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF  227 (345)
Q Consensus       148 lt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~  227 (345)
                      +|++++|++||+||++|+++++++  +|+++|+|+++||+.+|+++|++|+++++++++.|+|++++||+||+|+++|++
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~   78 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL   78 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999996  999999999999999999999999999999998889999999999999999999


Q ss_pred             hhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHH
Q 019159          228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS  307 (345)
Q Consensus       228 ~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~  307 (345)
                      ++++ ++|+ ++...++.++..|.                 ....++.++++||++|++||+|||||++|+|+|++++++
T Consensus        79 ~~~~-~~d~-~~~~~~~~~~~~~~-----------------~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~  139 (183)
T PF03741_consen   79 HEER-DEDP-ENAEVEEEKKFFPV-----------------SKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT  139 (183)
T ss_pred             Hhcc-cccc-chhhhhhhhccccc-----------------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence            9876 3333 44444444333222                 224699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          308 SNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       308 gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~  343 (345)
                      |+++|+++||++|+.++++++|||+++++++.+|.+
T Consensus       140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~  175 (183)
T PF03741_consen  140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGF  175 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=100.00  E-value=1.7e-43  Score=327.35  Aligned_cols=164  Identities=27%  Similarity=0.386  Sum_probs=147.8

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcc
Q 019159          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE  231 (345)
Q Consensus       152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~e  231 (345)
                      ++|++||+||++|+++++++  +|+++|||+++||+.||+++|++|+++++++++ ++|++++||+||+|+++|++++++
T Consensus         2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~   78 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK   78 (215)
T ss_pred             chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999995  999999999999999999999999999999995 679999999999999999999875


Q ss_pred             CCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHH
Q 019159          232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF  311 (345)
Q Consensus       232 ee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnif  311 (345)
                      ++++.++++                         .+...+.++.++++||++|++||+|||||++|+|+|++++++||++
T Consensus        79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~  133 (215)
T TIGR03716        79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII  133 (215)
T ss_pred             ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence            544332221                         0011246789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          312 AILGLRSLFTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       312 AIlgLRsLyflla~ll~rf~yLk~gla~ILi~  343 (345)
                      |+++||++|+.++++++||||+||+++.+|.+
T Consensus       134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~  165 (215)
T TIGR03716       134 GILIMRFAATIFVKLLERFPELETAAFLLIGW  165 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PRK14013 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-41  Score=324.57  Aligned_cols=223  Identities=21%  Similarity=0.241  Sum_probs=182.0

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HH
Q 019159          115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF  193 (345)
Q Consensus       115 k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vm  193 (345)
                      .+.++||+.+++++++.+++++   |.+.....+++.++|++||+||++|+|.+.++  +|++||+|+|+||+++|+ +|
T Consensus         3 ~~~f~~s~~~t~~~l~~~~~~g---~~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm   77 (338)
T PRK14013          3 LRYFRWSFIVTVIGLVLAAWLG---GLSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM   77 (338)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999998765   34556667788999999999999999999995  999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcc
Q 019159          194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI  249 (345)
Q Consensus       194 RiIfI~lg~~Ll~~------------------------f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~  249 (345)
                      |++|+++.+++.+.                        ++.+..+||+||++++.++++|+|+|.+|.. ++.|-++|.-
T Consensus        78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g  156 (338)
T PRK14013         78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG  156 (338)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence            99999999999874                        3358899999999999999999988888743 3333333332


Q ss_pred             cccc---------------cccCC-----------------------ceeEe--eC-CccccchHHHHHHHHHHHHHHhh
Q 019159          250 PVTT---------------YYDGN-----------------------RFFTN--QD-GMRKATPLLLTVAVIELSDIAFA  288 (345)
Q Consensus       250 pvt~---------------~~~G~-----------------------~F~v~--~~-g~~~aTpl~~vvl~IE~~DlvFS  288 (345)
                      ++..               ..+.+                       +++-.  ++ .+...+..+..++++|++|++||
T Consensus       157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS  236 (338)
T PRK14013        157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS  236 (338)
T ss_pred             CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            2110               00100                       01100  01 12234678899999999999999


Q ss_pred             cchHHHHHHhcCChHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       289 lDSVpAafAIT~d~fIV~~gnifAIlgLRsL--yflla~ll~rf~yLk~gla~ILi~  343 (345)
                      +|||||+||+|+|+++|++||++|++++|++  |++..++++||+|||||+..++..
T Consensus       237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~  293 (338)
T PRK14013        237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGA  293 (338)
T ss_pred             hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHH
Confidence            9999999999999999999999999999999  999999999999999998877654

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=100.00  E-value=2.5e-38  Score=284.62  Aligned_cols=165  Identities=22%  Similarity=0.262  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL  226 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~  226 (345)
                      +++..++|.+||+||++|++++++  ++|+++|||++.||+.+|+++|++|+++|.++++ ++|+++.||++|+|+|+||
T Consensus         2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m   78 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL   78 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999887  5999999999999999999999999999999996 7999999999999999999


Q ss_pred             hhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcC-ChHHH
Q 019159          227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV  305 (345)
Q Consensus       227 ~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~-d~fIV  305 (345)
                      +++++++++.++                             ...||+|.++++||++|++||+|||||++|+|+ |++++
T Consensus        79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li  129 (176)
T TIGR03717        79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL  129 (176)
T ss_pred             Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            987654433221                             114799999999999999999999999999997 78899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159          306 FSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN  343 (345)
Q Consensus       306 ~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~  343 (345)
                      ++|.++|++.||+.+..++++++||||+||+++.+|.+
T Consensus       130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~  167 (176)
T TIGR03717       130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGY  167 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998876

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=6.8e-35  Score=277.49  Aligned_cols=221  Identities=21%  Similarity=0.261  Sum_probs=177.5

Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH---HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHH
Q 019159          113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFA---GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (345)
Q Consensus       113 ~~k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt---~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlg  189 (345)
                      +..+.++||+..+.++++.++|.+|.+|...+..++-   +.++|+|||.||++|+|.+.+.  +.+.||||+|+|||++
T Consensus         2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlI   79 (346)
T COG2899           2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILI   79 (346)
T ss_pred             chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHH
Confidence            3567899999999999999999999887766655443   4689999999999999999996  9999999999999999


Q ss_pred             HH-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHH
Q 019159          190 AI-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKT  244 (345)
Q Consensus       190 Av-vmRiIfI~lg~~Ll~~------------------------f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~  244 (345)
                      |+ +||++|+++++++-..                        ++.|..+||.||++++.++++|.|+|.+|-+ |+.+-
T Consensus        80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~  158 (346)
T COG2899          80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERP  158 (346)
T ss_pred             HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHH
Confidence            98 8999999999988764                        4558899999999999999999888887642 33333


Q ss_pred             hhhcccccc-----------------cccCC--ceeEe-------------eCC---------ccccchHHHHHHHHHHH
Q 019159          245 CQRFIPVTT-----------------YYDGN--RFFTN-------------QDG---------MRKATPLLLTVAVIELS  283 (345)
Q Consensus       245 ~~k~~pvt~-----------------~~~G~--~F~v~-------------~~g---------~~~aTpl~~vvl~IE~~  283 (345)
                      +.|+-++..                 ..+++  .++..             .+|         ....+..+.+++|+|+.
T Consensus       159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL  238 (346)
T COG2899         159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL  238 (346)
T ss_pred             HHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHH
Confidence            333222110                 01221  12210             011         11234688999999999


Q ss_pred             HHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHH
Q 019159          284 DIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLI--SEGMADLEYLQVK  336 (345)
Q Consensus       284 DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyfll--a~ll~rf~yLk~g  336 (345)
                      |.+||+|+|+++||+|+||+||..|+.++.+.+||+.-++  ++.+++|+|||||
T Consensus       239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHG  293 (346)
T COG2899         239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHG  293 (346)
T ss_pred             hhhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcc
Confidence            9999999999999999999999999999999999995544  8999999999998

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=99.95  E-value=2.5e-28  Score=233.65  Aligned_cols=174  Identities=20%  Similarity=0.284  Sum_probs=138.2

Q ss_pred             hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 019159          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL  213 (345)
Q Consensus       159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~------------------------f~wI~~  213 (345)
                      .||++|+|.+.+.  +.+.||||+|+|||++|+ +||++|+++++++..+                        ++.+..
T Consensus         1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa   78 (294)
T PF04332_consen    1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA   78 (294)
T ss_pred             CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence            5999999999995  999999999999999999 8999999999998874                        345788


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccc---------------ccc--CC---ceeE-----------
Q 019159          214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTT---------------YYD--GN---RFFT-----------  262 (345)
Q Consensus       214 igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~---------------~~~--G~---~F~v-----------  262 (345)
                      +||.||+++++++++++++ .+|-. ++.|.+.|.-++..               .+.  .+   .+..           
T Consensus        79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~  156 (294)
T PF04332_consen   79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI  156 (294)
T ss_pred             HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999999877 66532 23333333222110               001  00   0110           


Q ss_pred             ---------eeCC-----ccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH--HHH
Q 019159          263 ---------NQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLI--SEG  326 (345)
Q Consensus       263 ---------~~~g-----~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyfll--a~l  326 (345)
                               .+++     +...+..+..++|+|+.|.+||+|+|+++||+|+|++||.+|+.+|+|.+|++.-.+  .+.
T Consensus       157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt  236 (294)
T PF04332_consen  157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT  236 (294)
T ss_pred             HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence                     1111     124567899999999999999999999999999999999999999999999996666  589


Q ss_pred             HHhhhhHHHH
Q 019159          327 MADLEYLQVK  336 (345)
Q Consensus       327 l~rf~yLk~g  336 (345)
                      +++|+|||||
T Consensus       237 L~~Y~YLEhG  246 (294)
T PF04332_consen  237 LSEYRYLEHG  246 (294)
T ss_pred             HHHhHHHhcc
Confidence            9999999998

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.15  E-value=0.0047  Score=56.48  Aligned_cols=74  Identities=24%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k  225 (345)
                      ..+..+.+.+.|+||+...+.+.+        +--....|...|+ +||...-.+. .++++|+|+.+.++++|.|+|.|
T Consensus       109 v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~-~~l~~~p~l~~~~~~~L~~ig~~  179 (183)
T PF03741_consen  109 VIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLA-KLLERFPYLKYLAAAILGFIGVK  179 (183)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999998888773        4467888998888 7887765554 47889999999999999999999


Q ss_pred             hhhh
Q 019159          226 LFAS  229 (345)
Q Consensus       226 ~~~~  229 (345)
                      |+.+
T Consensus       180 li~~  183 (183)
T PF03741_consen  180 LILE  183 (183)
T ss_pred             HhhC
Confidence            9753

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=97.08  E-value=0.058  Score=50.00  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhcc
Q 019159          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASEE  231 (345)
Q Consensus       158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~----wI~~igGafLly~g~k~~~~~e  231 (345)
                      -..|+.++....+.  .++++|+|+..-..+.|.+.=.+|.++|..+++.|.    -....||+.|...|++|+..+.
T Consensus        17 P~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~   92 (203)
T PF01914_consen   17 PIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP   92 (203)
T ss_pred             HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            46788899999885  899999999999999999999999999999997653    5889999999999999998654

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PRK10739 putative antibiotic transporter; Provisional

Probab=96.89  E-value=0.11  Score=48.17  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=62.7

Q ss_pred             hchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~  230 (345)
                      =-+.|+-+|..+++.  .++++|+|+..-..+.|.+.=++|.+.|..+++.|    +-....||+.|...|++|+.++
T Consensus        16 nPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~   91 (197)
T PRK10739         16 DPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS   91 (197)
T ss_pred             hHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            346788999999885  89999999999999999888889999999999765    3588999999999999999765

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.017  Score=55.64  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k  225 (345)
                      ..+..+++.+-|+||+.-..-+.+        +.-+...|...|+ +||...-.+. .++++|+++.+.+.++|+|+|.|
T Consensus       137 i~~I~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l~-~ll~r~p~l~~~~~~iL~~IG~k  207 (254)
T COG0861         137 IIQIELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLLA-RLLERHPTLKYLALVILLFIGVK  207 (254)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHHHHHHHHHHHH
Confidence            444678999999999998888775        3468999999998 7888765554 58889999999999999999999


Q ss_pred             hhhhc
Q 019159          226 LFASE  230 (345)
Q Consensus       226 ~~~~~  230 (345)
                      |+.++
T Consensus       208 li~~~  212 (254)
T COG0861         208 LILEG  212 (254)
T ss_pred             HHHhh
Confidence            99876

>PRK10995 inner membrane protein; Provisional

Probab=96.86  E-value=0.13  Score=48.07  Aligned_cols=71  Identities=11%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~  230 (345)
                      =+.|+-+|..+++.  .++++|+|+-....+.|.+.=++|.+.|..+++-|    +.....||++|++.|++|++++
T Consensus        21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~   95 (221)
T PRK10995         21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ   95 (221)
T ss_pred             hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35688889988885  79999999999999999988889999999999754    4689999999999999999764

>TIGR00427 membrane protein, MarC family

Probab=96.81  E-value=0.18  Score=46.81  Aligned_cols=74  Identities=15%  Similarity=0.321  Sum_probs=64.0

Q ss_pred             HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~  230 (345)
                      +.=-+.|+-+|....+.  .++++|+|......+.|.+.=++|.+.|..+++.|    +-....||+.|...|++|+..+
T Consensus        17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~   94 (201)
T TIGR00427        17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE   94 (201)
T ss_pred             HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34456789999999985  89999999999999999988899999999999754    3578999999999999999764

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=96.77  E-value=0.014  Score=54.92  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019159          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSF  224 (345)
Q Consensus       146 eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~  224 (345)
                      ...+..+.+.+.|+||+.....+.+        ..-....|...++ +||..--.+ +.++++|+++.+.+.++|.|+|.
T Consensus        98 av~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~  168 (215)
T TIGR03716        98 TVLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGV  168 (215)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555678899999999998888754        3357888888887 788876666 55888999999999999999999


Q ss_pred             Hhhhhc
Q 019159          225 KLFASE  230 (345)
Q Consensus       225 k~~~~~  230 (345)
                      ||+.+.
T Consensus       169 kLil~~  174 (215)
T TIGR03716       169 KLLLET  174 (215)
T ss_pred             HHHHHH
Confidence            999875

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>COG1971 Predicted membrane protein [Function unknown]

Probab=96.76  E-value=0.18  Score=46.97  Aligned_cols=82  Identities=17%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 019159          146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL  220 (345)
Q Consensus       146 eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-----~wI~~igGafLl  220 (345)
                      ++++..++-..+|.||-.|=.. -+--+.+++. +..|..|+... ++-.+++++|..+=..+     +|-.+++++.|+
T Consensus         2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~~-~~~L~ia~~fG-~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~   78 (190)
T COG1971           2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIRF-KEALVIALIFG-VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI   78 (190)
T ss_pred             cHHHHHHHHHHHhhHHHHHHHH-hhhhhccccH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999665322 1111223332 34555554444 34566777776554322     356778999999


Q ss_pred             HHHHHhhhhc
Q 019159          221 FSSFKLFASE  230 (345)
Q Consensus       221 y~g~k~~~~~  230 (345)
                      +.|.+|+++.
T Consensus        79 ~lG~~mI~e~   88 (190)
T COG1971          79 ILGLKMIIEG   88 (190)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=96.62  E-value=0.024  Score=51.69  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k  225 (345)
                      ..+..+.+.+.|+||+.....+.+.       +-..+..|+..++ +||..- -..+.++++|+++.+.+.++|.|+|.|
T Consensus       100 v~~I~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s-~~~~~~~~~~p~l~~~~~~~L~~ig~k  171 (176)
T TIGR03717       100 IKTIVIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGS-TLILKLMDRFPWIIYIGAALLGYVAGE  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999988776641       3357788888877 444443 355567889999999999999999999


Q ss_pred             hhhh
Q 019159          226 LFAS  229 (345)
Q Consensus       226 ~~~~  229 (345)
                      |+.+
T Consensus       172 l~~~  175 (176)
T TIGR03717       172 MIVT  175 (176)
T ss_pred             HhcC
Confidence            9874

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK11111 hypothetical protein; Provisional

Probab=96.27  E-value=0.41  Score=45.00  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~  230 (345)
                      =+.|+-+|....+.  .++++|+|+.....+.|.+.=++|.++|-++++-|    +-....||+.|+..|++|+..+
T Consensus        23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK   97 (214)
T ss_pred             cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35688888888885  79999999999999999988889999999999754    3478999999999999999754

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=96.19  E-value=0.1  Score=48.42  Aligned_cols=74  Identities=23%  Similarity=0.331  Sum_probs=47.6

Q ss_pred             hchhHHHHHHHHhCcCCCChHhHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCC
Q 019159          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVF--RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD  233 (345)
Q Consensus       157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~G-IlgAvvm--RiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~eee  233 (345)
                      =.+|..++....|++  .+.+.|+|-..+| .+|..++  =-++.+.+..++ --+|++-+.|..=++.|+|.+.++|+|
T Consensus         4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~i-p~~wiLGlLGliPI~lGi~~l~~~~~~   80 (191)
T PF03596_consen    4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFI-PPEWILGLLGLIPIYLGIKALFSGEDD   80 (191)
T ss_pred             ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            368999999999996  4555566777777 3332221  111222222222 236998899999999999988765433

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.06  E-value=0.27  Score=46.07  Aligned_cols=75  Identities=23%  Similarity=0.266  Sum_probs=65.5

Q ss_pred             HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhc
Q 019159          155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~----wI~~igGafLly~g~k~~~~~  230 (345)
                      .+=...|+-++..+.+.  +|+++|+|+..-....|.+.=.+|.++|.++++-|.    -....||..|.+.|++|+..+
T Consensus        17 i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~   94 (203)
T COG2095          17 IIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP   94 (203)
T ss_pred             HhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence            44567899999999985  899999999999999999988999999999997543    478899999999999999976


Q ss_pred             c
Q 019159          231 E  231 (345)
Q Consensus       231 e  231 (345)
                      .
T Consensus        95 ~   95 (203)
T COG2095          95 T   95 (203)
T ss_pred             c
Confidence            4

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=96.04  E-value=0.11  Score=47.19  Aligned_cols=84  Identities=11%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHH-HHHHhchhHHHHHHHHhCcCCCChHhHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHH
Q 019159          142 SKASEFFAGYI-LEQSLSVDNLFVFVLIFKYFKVPVMYQN-RVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV  214 (345)
Q Consensus       142 ~~a~eflt~yl-LE~sLSvDNafV~a~If~~f~vP~~~Q~-rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~w----I~~i  214 (345)
                      |....|+...+ +=.+=+-||+.+...-.++ +    .|+ -....|+..+...=......|. .+++.++|    +.++
T Consensus         4 ~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G----~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~   78 (195)
T PRK10323          4 TLLSAFWTYTLITAMTPGPNNILALSSATSH-G----FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA   78 (195)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444554433 3334488999999887664 2    222 2456677777655455555555 55655554    7889


Q ss_pred             HHHHHHHHHHHhhhhc
Q 019159          215 LAGILLFSSFKLFASE  230 (345)
Q Consensus       215 gGafLly~g~k~~~~~  230 (345)
                      |++||+|.|+|+++.+
T Consensus        79 Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         79 GAAYIVWLAWKIATSP   94 (195)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999864

>PRK11469 hypothetical protein; Provisional

Probab=95.71  E-value=1.6  Score=40.27  Aligned_cols=81  Identities=14%  Similarity=0.052  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh-hHHHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL----LGTATLQRF-EAVNLVLAGILLF  221 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~----lg~~Ll~~f-~wI~~igGafLly  221 (345)
                      +++..++=.+||.||..|=...=-  +.++...++.+...+..+. +-.++++    +|..+.+.. +|-..+++..|++
T Consensus         3 ~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~   79 (188)
T PRK11469          3 ITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF   79 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999776443221  1233333443433333332 2334444    333332211 1345788889999


Q ss_pred             HHHHhhhhc
Q 019159          222 SSFKLFASE  230 (345)
Q Consensus       222 ~g~k~~~~~  230 (345)
                      .|.+|+++.
T Consensus        80 lG~~mi~e~   88 (188)
T PRK11469         80 LGGRMIIEG   88 (188)
T ss_pred             HHHHHHHHH
Confidence            999999865

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=94.10  E-value=5  Score=37.35  Aligned_cols=77  Identities=16%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             HHHHHHHhchhHHHH-HHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHHh
Q 019159          150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL  226 (345)
Q Consensus       150 ~ylLE~sLSvDNafV-~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-~-wI~~igGafLly~g~k~  226 (345)
                      ..++=.+||.|+..| ++.=.+.  ++. --+..+..|+.-+ +|=.+-..+|..+-+.. + |-.+++|+.|++.|.+|
T Consensus         3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m   78 (206)
T TIGR02840         3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI   78 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            456778999999887 4433332  222 1223444444433 23333333444333222 2 46789999999999999


Q ss_pred             hhhc
Q 019159          227 FASE  230 (345)
Q Consensus       227 ~~~~  230 (345)
                      +.+.
T Consensus        79 i~~~   82 (206)
T TIGR02840        79 IYNA   82 (206)
T ss_pred             HHHH
Confidence            8753

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=94.05  E-value=0.61  Score=43.02  Aligned_cols=78  Identities=26%  Similarity=0.309  Sum_probs=52.1

Q ss_pred             HHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHH
Q 019159          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSS  223 (345)
Q Consensus       149 t~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~----f~wI~~igGafLly~g  223 (345)
                      +..++-.+=+=||+.+++.-.++ +   ..+--..-.|+..+...=.+...+|. .++..    |..+.++|++||+|.|
T Consensus        12 ~~~~~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg   87 (208)
T COG1280          12 AALVLAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG   87 (208)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34566666788999999887663 1   22223444555545555555555653 45544    5568999999999999


Q ss_pred             HHhhhhc
Q 019159          224 FKLFASE  230 (345)
Q Consensus       224 ~k~~~~~  230 (345)
                      +|+++..
T Consensus        88 ~~~~ra~   94 (208)
T COG1280          88 WKALRAG   94 (208)
T ss_pred             HHHHhcc
Confidence            9999965

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=94.03  E-value=0.22  Score=49.40  Aligned_cols=75  Identities=21%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k  225 (345)
                      ..+.-+.+.+-|+||+..+..+.+.        +-+.+.|-..|+ ++|....+ ...++++|+++.+.++++|.++|.|
T Consensus       195 li~Ie~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvk  265 (302)
T TIGR03718       195 LVLVETTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVK  265 (302)
T ss_pred             HHHHHHHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445677899999999999888763        235555666665 89998766 5568899999999999999999999


Q ss_pred             hhhhc
Q 019159          226 LFASE  230 (345)
Q Consensus       226 ~~~~~  230 (345)
                      |+.++
T Consensus       266 mll~~  270 (302)
T TIGR03718       266 MLLHA  270 (302)
T ss_pred             HHHhh
Confidence            99854

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK10229 threonine efflux system; Provisional

Probab=93.45  E-value=0.97  Score=40.95  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 019159          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS  222 (345)
Q Consensus       148 lt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~  222 (345)
                      ....++..+=+-||+.++..-.++ +   ..+--....|+..+...=.+...+|. .+++.++    .+.++|++||+|.
T Consensus        10 ~~~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl   85 (206)
T PRK10229         10 MVHIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM   85 (206)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            335666777788999999887764 2   11222345566666555555555666 4555544    4788999999999


Q ss_pred             HHHhhhhc
Q 019159          223 SFKLFASE  230 (345)
Q Consensus       223 g~k~~~~~  230 (345)
                      |+|++++.
T Consensus        86 g~~~~~~~   93 (206)
T PRK10229         86 GYQMLRGA   93 (206)
T ss_pred             HHHHHHhc
Confidence            99999864

>PRK09304 arginine exporter protein; Provisional

Probab=93.35  E-value=0.98  Score=41.31  Aligned_cols=78  Identities=19%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHH
Q 019159          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLF  221 (345)
Q Consensus       147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~w----I~~igGafLly  221 (345)
                      ++.|+.+-..=+-||+.+...-.++      .+.-....|+..+..+=.....+|. .+++.++|    +.++|++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777788999999875542      1234555566555555555545555 45656555    78889999999


Q ss_pred             HHHHhhhhc
Q 019159          222 SSFKLFASE  230 (345)
Q Consensus       222 ~g~k~~~~~  230 (345)
                      .|+|+++.+
T Consensus        83 Lg~~~~rs~   91 (207)
T PRK09304         83 YGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHh
Confidence            999999864

>TIGR00948 2a75 L-lysine exporter

Probab=92.97  E-value=0.77  Score=40.69  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=46.8

Q ss_pred             hchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHHHhhhhc
Q 019159          157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~-Ll~~----f~wI~~igGafLly~g~k~~~~~  230 (345)
                      -+-||++++..-.++ +     +--....|+..+...=.++..+|.. +++.    +..+.++||+||+|.|+|++++.
T Consensus         5 pGP~~~~vi~~~~~~-~-----~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948         5 IGAQNAFVLRQGIRR-E-----HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             ecchHHHHHHHHHcc-c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356888888887762 1     1234456666666666566666654 5544    44588999999999999999864

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=92.02  E-value=1.3  Score=39.33  Aligned_cols=69  Identities=25%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             hchhHHHHHHHHhCcCCCChHhHHHHH--HHHHHHHHHHHHHHHHHHHHHH-Hh----hhHHHHHHHHHHHHHHHHhhhh
Q 019159          157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATL-QR----FEAVNLVLAGILLFSSFKLFAS  229 (345)
Q Consensus       157 LSvDNafV~a~If~~f~vP~~~Q~rvL--~~GIlgAvvmRiIfI~lg~~Ll-~~----f~wI~~igGafLly~g~k~~~~  229 (345)
                      .+-+|+.++..-.++ +     +++.+  ..|...+...=+....+|...+ +.    ..++.++||+||+|.|++++++
T Consensus         7 PGP~~~~~i~~~~~~-G-----~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~   80 (191)
T PF01810_consen    7 PGPVNLLVISNGLRK-G-----FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS   80 (191)
T ss_pred             CCHHHHHHHHHHHHh-C-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788887776553 1     33333  3444444444445555555444 32    3458899999999999999996


Q ss_pred             cc
Q 019159          230 EE  231 (345)
Q Consensus       230 ~e  231 (345)
                      +.
T Consensus        81 ~~   82 (191)
T PF01810_consen   81 KF   82 (191)
T ss_pred             cc
Confidence            53

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=90.91  E-value=3  Score=37.76  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 019159          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS  222 (345)
Q Consensus       150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rv--L~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~  222 (345)
                      ..++-.+=+=||+.++..-.++     - +++.  ...|+..+...=.+...+|. .+++.++    .+.++|++||+|.
T Consensus        13 ~~~~~~sPGP~~~~v~~~~~~~-----G-~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~l   86 (205)
T PRK10520         13 SIILSLSPGSGAINTMSTSISH-----G-YRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWL   86 (205)
T ss_pred             HHHHhcCCchhHHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3445556677888888776543     1 3333  33466666655555555555 4555444    4788999999999


Q ss_pred             HHHhhhhc
Q 019159          223 SFKLFASE  230 (345)
Q Consensus       223 g~k~~~~~  230 (345)
                      |+|+++.+
T Consensus        87 g~~~~~s~   94 (205)
T PRK10520         87 GIQQWRAA   94 (205)
T ss_pred             HHHHHhCC
Confidence            99999864

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=90.72  E-value=2.3  Score=37.65  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHhCcCCCChHhHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhhc
Q 019159          159 VDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFASE  230 (345)
Q Consensus       159 vDNafV~a~If~~f~vP~~~Q~rv--L~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~g~k~~~~~  230 (345)
                      -||+.++..-.++     . +++.  ...|+..+...=++...+|. .+++.++    .+.++||+||+|.|+++++++
T Consensus         4 P~~~~~~~~~~~~-----G-~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~   76 (185)
T TIGR00949         4 PNFFVVMQTSLSS-----G-RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK   76 (185)
T ss_pred             cchHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4677777766543     2 3333  45566666655555555554 4555444    478899999999999999853

>PRK10958 leucine export protein LeuE; Provisional

Probab=90.48  E-value=3.3  Score=38.14  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             HHHHHhchhHHHHHHHHhCcCCCChHhHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHH
Q 019159          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSF  224 (345)
Q Consensus       152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL--~~GIlgAvvmRiIfI~lg~~-Ll~~f----~wI~~igGafLly~g~  224 (345)
                      ++=.+=+-||+.++..-.++      -+++.+  ..|+..+...=+....+|.. ++..+    ..+.++||+||+|.|+
T Consensus        19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~   92 (212)
T PRK10958         19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV   92 (212)
T ss_pred             HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34456788999999887664      133444  34555555555555555553 44443    4478999999999999


Q ss_pred             Hhhhhc
Q 019159          225 KLFASE  230 (345)
Q Consensus       225 k~~~~~  230 (345)
                      |.++++
T Consensus        93 ~~~~~~   98 (212)
T PRK10958         93 KMLRAA   98 (212)
T ss_pred             HHHHhh
Confidence            999864

>COG2119 Predicted membrane protein [Function unknown]

Probab=88.75  E-value=11  Score=35.27  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhhcc
Q 019159          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEE  231 (345)
Q Consensus       159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~--wI~~igGafLly~g~k~~~~~e  231 (345)
                      .|--+.++++..     -++|++..+-|+.+|. .|-+.-..+|-+..+-++  |..++.|..-+-.|+|++.++.
T Consensus        17 GDKT~lia~llA-----~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk   87 (190)
T COG2119          17 GDKTQLIAMLLA-----MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDK   87 (190)
T ss_pred             ccHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            788999999875     3677889999999998 799999999998886666  7888888888888999998763

>COG1279 Lysine efflux permease [General function prediction only]

Probab=85.48  E-value=9.4  Score=36.10  Aligned_cols=72  Identities=24%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH----HHHHHHHHHHH
Q 019159          150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRFEA----VNLVLAGILLF  221 (345)
Q Consensus       150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg----~~Ll~~f~w----I~~igGafLly  221 (345)
                      +.-+=..+++.|+||+-.=.+        |+++|..-+.-+ +.=.++|.+|    ..++++.+|    +.+.|.+||+|
T Consensus        12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c~-i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~   82 (202)
T COG1279          12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALLCA-ISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY   82 (202)
T ss_pred             HHHHHHhccchhHHHHHHHHh--------hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            334456779999999876443        355655544433 3333344333    345666666    56678899999


Q ss_pred             HHHHhhhhc
Q 019159          222 SSFKLFASE  230 (345)
Q Consensus       222 ~g~k~~~~~  230 (345)
                      .|++-+++.
T Consensus        83 yg~~a~~~a   91 (202)
T COG1279          83 YGLLALKSA   91 (202)
T ss_pred             HHHHHHHhh
Confidence            999998864

>PRK11469 hypothetical protein; Provisional

Probab=82.83  E-value=21  Score=32.91  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHh----Chh-------hHHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCChHhHHHHHHHHHHHH
Q 019159          123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (345)
Q Consensus       123 ~wv~lAllFg~~v~~~~----g~~-------~a~eflt~ylLE~sLSvDNafV-~a~If~~f~vP~~~Q~rvL~~GIlgA  190 (345)
                      =|++..+++..+.|...    +.+       .-..+....++=.++|+||+.| +..-+.  ++|.-  .-++..|+.- 
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~~--~~~~~ig~~s-  144 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNII--ATALAIGCAT-  144 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHH--HHHHHHHHHH-
Confidence            47777777776666332    111       0122445677888999999988 555544  23321  1233344333 


Q ss_pred             HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhh
Q 019159          191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS  229 (345)
Q Consensus       191 vvmRiIfI~lg~~Ll~~-----f~wI~~igGafLly~g~k~~~~  229 (345)
                          .++..+|.++=.+     -.|..+++|+.|+..|+|++.+
T Consensus       145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~  184 (188)
T PRK11469        145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT  184 (188)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444444443321     1367889999999999999875

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=81.64  E-value=27  Score=31.92  Aligned_cols=72  Identities=19%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             HHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 019159          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF  224 (345)
Q Consensus       151 ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~w--I~~igGafLly~g~  224 (345)
                      .+.-..-+.-+....+.+.+.  .|+++|.++.-+--.+.-+-.++...++..+.+.+.|  ..++.++..+..++
T Consensus        93 ~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   93 FLLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            344444467777788888886  6777777776554444446667788888877766554  55555555555444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00