Citrus Sinensis ID: 019172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKGC
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccEEEcccccEEEEEEccccccEEEEEccccccccccccEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHccEEEEEcccHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHcHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccccccccccccccccEcccccccccccHHcccccccccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEccccEEEEEEEccccEEEHEcccHHHHHcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHcEEEEEEcccccEEEEccHHHHHHHccEEEEEccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccHHHHcccHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAAAAATYHhlslssisqnpisksetqhfssprhsvsifkpifissslhkstnvvpikthdrrrftcsnslssipantsqyefsdgsAEIELRLQLGsleiqsskdifvdadgtcltvrvnrsgSFITLIETnqlfdkikptetiwyidedQLVINLkkqdpelkwpdiVESWESLTAGSMQLLKGTSIflvgdsteVNEKVALELAVglgytplsTKELLETFAKQTIDSwmlaegsdsvvngECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKGC
Flexible Loop (DISEMBL)
MAAAAatyhhlslssisqnpISKSETQHFSSPRHSVSIFKPIfissslhkstnvvpikthdrrrftcsnslssipantsQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRsgsfitlietnqlfdkiKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVssfsrtnehimarkpavmktlvtkgc
Low Complexity Region (SEG)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKGC
Disordered region (IsUnstruct)
************************************SIFKPIFISSSLHKSTNVVPIKTHDRRRFTC*********************EIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIM***************
Disordered Region (DISOPRED)
********HHLSLSSISQNPI*************************************THDRRRFTC**************EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK*****KWPDIVESWESLTAG*MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKG*
Disordered Region (DISEMBL)
************LSSISQN**************HSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKGC
Disordered Region (DISPRO)
M***AATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSL***T**V****HDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLV**GC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTLVTKGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
O82290	387	Probable inactive shikima	yes	no	0.823	0.733	0.611	5e-88
Q5N4D3	190	Shikimate kinase OS=Synec	yes	no	0.292	0.531	0.336	6e-07
Q31PU5	190	Shikimate kinase OS=Synec	yes	no	0.292	0.531	0.336	6e-07
P72796	189	Shikimate kinase OS=Synec	N/A	no	0.295	0.539	0.314	2e-06
Q2JKT7	187	Shikimate kinase OS=Synec	yes	no	0.292	0.540	0.326	4e-06
Q3MFQ9	181	Shikimate kinase OS=Anaba	yes	no	0.295	0.563	0.323	6e-06
B7JZT6	187	Shikimate kinase OS=Cyano	yes	no	0.304	0.561	0.287	1e-05
Q2JRJ6	189	Shikimate kinase OS=Synec	yes	no	0.292	0.534	0.326	1e-05
Q8YXG9	181	Shikimate kinase OS=Nosto	yes	no	0.295	0.563	0.304	5e-05
Q5NTH3	307	Shikimate kinase 2, chlor	no	no	0.292	0.328	0.352	0.0001

>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2

 Score =  324 bits (831), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/296 (61%), Positives = 220/296 (74%), Gaps = 12/296 (4%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP- 59

Query: 58  KTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCL 116
              DR   F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L
Sbjct: 60  ---DRFNSFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSL 115

Query: 117 TVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESL 176
            V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESL
Sbjct: 116 AVKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESL 175

Query: 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAE 236
           TAG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAE
Sbjct: 176 TAGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAE 235

Query: 237 GSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
           G DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA
Sbjct: 236 GPDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEA 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aroK PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G ++FL+G        V   LA  LGY       L+E  A + I      +G D+  +
Sbjct: 10  LQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGEDTFRD 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
            E +VL  L++  R+V+AT G   G   R   W +L+ G  +WL 
Sbjct: 70  LETEVLGHLAAQTRSVIATGG---GVVLRRQNWSYLHHGLVIWLD 111

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=aroK PE=3 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G +++L+G        V  ELA  L +    T  L+E     +I       G     +
Sbjct: 10  LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQVGGSSIAQIFAEHGEAYFRD 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VL  LSS+ R V+AT G   G   R   W +L+ G TVWL
Sbjct: 70  LETQVLAQLSSYTRLVIATGG---GIVLRPKNWSYLHHGLTVWL 110

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroK PE=3 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+G +++L+G        V   LA  LGY  L T  ++   AK++I+      G     
Sbjct: 4   LLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEAGFR 63

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             E DVL  + S+ +  VAT G   G   R + W +L+ G  VWL
Sbjct: 64  QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLIVWL 105

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD 239
           + +LL+G +I+L+G        +   LA  L Y    T  L+E   +Q+I+   + +G  
Sbjct: 3   TQKLLQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILIERVTQQSINDIFVTQGET 62

Query: 240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
              + E  VL  +++  R+V+AT GG  G    +  W +L+ G  +WL
Sbjct: 63  VFRDIETQVLSEVAACTRSVIAT-GG--GIVLNSQNWSYLHHGLIIWL 107

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G +++L+G        +  ELA  L      T  L+E  A  +I      +G      
Sbjct: 10  LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGCSIAQIFAEQGEAHFRE 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VL  LS + R VVAT G   G   R   W +L+ G TVWL
Sbjct: 70  LETQVLAQLSGYTRLVVATGG---GIVLRPKNWSYLHHGLTVWL 110

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aroK PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+G +++L+G        V   LA  LGY  L T  ++    K++I+      G     
Sbjct: 4   LLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATKKSINEIFAEAGEAGFR 63

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             E DVL  + S+ +  VAT G   G   R + W +L+ G  +WL
Sbjct: 64  QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWL 105

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SK2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
           L G  I+LVG        VA  LA  LGY+   + +L+E        + +  E S++   
Sbjct: 92  LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
           + E  VL  LSS  R VVAT G   GA  R   W+++  G +VWL
Sbjct: 152 DNESSVLRDLSSMRRLVVATGG---GAVIRPVNWKYMKKGLSVWL 193

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
224071393	384	shikimate kinase-like protein [Populus t	0.773	0.695	0.689	1e-100
255555887	382	ATP binding protein, putative [Ricinus c	0.727	0.657	0.694	2e-99
449465896	384	PREDICTED: uncharacterized protein LOC10	0.721	0.648	0.718	3e-98
225427143	371	PREDICTED: uncharacterized protein LOC10	0.776	0.722	0.637	1e-97
388490874	376	unknown [Lotus japonicus]	0.657	0.603	0.713	4e-93
357485087	377	Shikimate kinase-like protein [Medicago	0.652	0.596	0.725	7e-93
356497645	369	PREDICTED: uncharacterized protein LOC10	0.684	0.639	0.7	8e-93
388504258	377	unknown [Medicago truncatula]	0.652	0.596	0.721	2e-92
18403860	387	shikimate kinase like 2 [Arabidopsis tha	0.823	0.733	0.611	3e-86
297823343	388	hypothetical protein ARALYDRAFT_482510 [	0.8	0.711	0.594	9e-86

>gi|224071393|ref|XP_002303438.1| shikimate kinase-like protein [Populus trichocarpa] gi|222840870|gb|EEE78417.1| shikimate kinase-like protein [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/280 (68%), Positives = 223/280 (79%), Gaps = 13/280 (4%)

Query: 15  SISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVV-PIKTHDRRRFTCSNSLSS 73
           S+S  P S S+T   S    S+SI           KS N   P+  +   RF+C N +S+
Sbjct: 25  SLSNIPFSISKTNFTSVANFSLSI--------PASKSNNASSPLNRY--SRFSC-NCIST 73

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
              NT+ YEFSD S+E+ELRL L  L+IQSS+DIFVDADGT L V+V  SGS ITLIETN
Sbjct: 74  ATPNTN-YEFSDSSSEVELRLSLVGLDIQSSRDIFVDADGTSLVVQVQHSGSHITLIETN 132

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVG 193
           ++F+KIKP ETIW+ID+DQLVIN+KKQDP+LKWPDIVESWESLTAGSMQLLKG SIFLVG
Sbjct: 133 KMFEKIKPAETIWFIDDDQLVINMKKQDPDLKWPDIVESWESLTAGSMQLLKGASIFLVG 192

Query: 194 DSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS 253
           DSTE+N+KVA ELAVGLGYT L T+ELLETFAKQTIDSW+LAEGSDSV   EC +LESLS
Sbjct: 193 DSTEINQKVARELAVGLGYTLLDTQELLETFAKQTIDSWVLAEGSDSVAEAECAILESLS 252

Query: 254 SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM 293
           SHVRAVV+TLGG+QGAA +A KWQHLYAGFTVWLSQTEA+
Sbjct: 253 SHVRAVVSTLGGKQGAAGKAYKWQHLYAGFTVWLSQTEAL 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555887|ref|XP_002518979.1| ATP binding protein, putative [Ricinus communis] gi|223541966|gb|EEF43512.1| ATP binding protein, putative [Ricinus communis]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/262 (69%), Positives = 214/262 (81%), Gaps = 11/262 (4%)

Query: 38  IFKPIFISSSLH-------KSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEI 90
           I KP+F S S         KS NV   K ++R   +C ++ ++    ++ YEFSDGS+E+
Sbjct: 32  ISKPVFTSISKFCLPISSFKSYNVSASKEYNRLSCSCFSTATT----STNYEFSDGSSEV 87

Query: 91  ELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE 150
           ELRL LGS + +S KDIFVDADGT L VRV RSGSF TLI+TN LFDKIKP ETIWYID+
Sbjct: 88  ELRLPLGSQDYESGKDIFVDADGTSLIVRVKRSGSFTTLIQTNYLFDKIKPAETIWYIDD 147

Query: 151 DQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210
           DQLVINLKKQDPELKWPDIVESWESLTAG+MQLLKGTSI++VGDSTE+N+KVA ELA GL
Sbjct: 148 DQLVINLKKQDPELKWPDIVESWESLTAGAMQLLKGTSIYIVGDSTEINQKVARELAGGL 207

Query: 211 GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAA 270
           GYTPL T+ELLET+ KQTIDSW+LAEGSDSV   E  +LESLSSHVRAV++TLG ++GAA
Sbjct: 208 GYTPLDTQELLETYTKQTIDSWVLAEGSDSVAEAESAILESLSSHVRAVISTLGRKKGAA 267

Query: 271 ARADKWQHLYAGFTVWLSQTEA 292
            R+D+W+HLYAGFTVWLSQTEA
Sbjct: 268 GRSDRWRHLYAGFTVWLSQTEA 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465896|ref|XP_004150663.1| PREDICTED: uncharacterized protein LOC101203272 [Cucumis sativus] gi|449517683|ref|XP_004165874.1| PREDICTED: uncharacterized LOC101203272 [Cucumis sativus]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/249 (71%), Positives = 207/249 (83%)

Query: 44  ISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQS 103
           IS++L    ++ P  T    RFT + S S+ P  T  YEF+D S+E+ELRLQLG+ +I+S
Sbjct: 40  ISTALTSCFSLSPSNTRFSSRFTRNCSSSTAPVRTLDYEFTDSSSEVELRLQLGTQDIRS 99

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
           SKD++VDA+ T LT+RV R GS ITL+ET QLF+KIKP ETIWYIDEDQLVINLKK DP+
Sbjct: 100 SKDVYVDANDTSLTIRVQRPGSIITLLETKQLFEKIKPAETIWYIDEDQLVINLKKHDPD 159

Query: 164 LKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223
           LKWPDIVESWESLTAG  QLLKGTSIFL+GDST++N+KVA ELAVGLGYTPLSTKELLET
Sbjct: 160 LKWPDIVESWESLTAGFAQLLKGTSIFLIGDSTDINQKVAHELAVGLGYTPLSTKELLET 219

Query: 224 FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGF 283
            +KQTIDSWMLAEGSD+V   E  V+ESLSSHVRAVVATLGG+ GAA R D W+HLYAGF
Sbjct: 220 LSKQTIDSWMLAEGSDAVAQVENTVIESLSSHVRAVVATLGGRLGAAGRTDTWRHLYAGF 279

Query: 284 TVWLSQTEA 292
           TVWLSQTEA
Sbjct: 280 TVWLSQTEA 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427143|ref|XP_002277265.1| PREDICTED: uncharacterized protein LOC100266016 [Vitis vinifera] gi|297742063|emb|CBI33850.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/287 (63%), Positives = 225/287 (78%), Gaps = 19/287 (6%)

Query: 12  SLSSISQNPISKSETQH----FSSPRHSVSIF-KPIFISSSLHKSTNVVPIKTHDRRRFT 66
           SL   SQNP +  +  H     SSP+ ++++F  P FIS++               RR +
Sbjct: 4   SLFFFSQNPFTSPQISHPKISLSSPKPTLTLFTPPPFISNNA-------------TRRLS 50

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  +LS+I  N S YEFSD S+E+ELRLQLG     SS+DIFVDA+ + L + V +SGSF
Sbjct: 51  C-KALSTISVNPSNYEFSDASSEMELRLQLGGGGTLSSRDIFVDAEDSSLKIGVKQSGSF 109

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITL+E N+L++KIK +ETIWYIDEDQLV+NLKKQDP+LKWPDIVESWESLTAG+MQLLKG
Sbjct: 110 ITLVEINKLYEKIKSSETIWYIDEDQLVVNLKKQDPDLKWPDIVESWESLTAGAMQLLKG 169

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI++VGDSTE+N+KVA ELAVGLGYTPL+TKELLETFAKQ+IDSW+ A+GS+SV   E 
Sbjct: 170 TSIYIVGDSTEINDKVARELAVGLGYTPLNTKELLETFAKQSIDSWVTADGSESVAEAES 229

Query: 247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM 293
            VLE+LSSHVRAV+ATLGG  GAA RADKW+HLYAGFTVWLSQ+E++
Sbjct: 230 AVLENLSSHVRAVIATLGGLHGAARRADKWRHLYAGFTVWLSQSESI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490874|gb|AFK33503.1| unknown [Lotus japonicus]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 164/230 (71%), Positives = 196/230 (85%), Gaps = 3/230 (1%)

Query: 63  RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR 122
           R   CS +    P  T+ YEFSDGS+E+ELRL +G L+IQS++DI VDAD + L ++V R
Sbjct: 54  RPCKCSYT---APVPTTTYEFSDGSSEMELRLNIGGLDIQSTRDISVDADDSSLAIKVLR 110

Query: 123 SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQ 182
           SGS +TLIETN LFD+IKP+ETIWYIDEDQLV+N KKQDP+LKWPDI+ESWESL AGS Q
Sbjct: 111 SGSPLTLIETNPLFDRIKPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQ 170

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+GTSI+LVGDSTE+N+KVA ELA+GLGYTPL+TKELLE + KQT+DSW+LAEG DSV 
Sbjct: 171 LLQGTSIYLVGDSTEINQKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPDSVA 230

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
             E  VLES+SS+ RAVVATLGG+QGA+ R+DKWQHL+AGFTVWLSQTEA
Sbjct: 231 EAESSVLESMSSYARAVVATLGGKQGASRRSDKWQHLHAGFTVWLSQTEA 280

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485087|ref|XP_003612831.1| Shikimate kinase-like protein [Medicago truncatula] gi|355514166|gb|AES95789.1| Shikimate kinase-like protein [Medicago truncatula]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 197/226 (87%), Gaps = 1/226 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS 
Sbjct: 57  CKCSFTA-PVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSP 115

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITLI+TN LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKG
Sbjct: 116 ITLIDTNPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKG 175

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+LVGDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE 
Sbjct: 176 TSIYLVGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEG 235

Query: 247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
            VLES+SSHVRA VATLGG+ GAA R+DKW+HLYAGFTVWLSQTEA
Sbjct: 236 TVLESISSHVRAAVATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEA 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497645|ref|XP_003517670.1| PREDICTED: uncharacterized protein LOC100816906 [Glycine max]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 168/240 (70%), Positives = 199/240 (82%), Gaps = 4/240 (1%)

Query: 55  VPIKTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADG 113
           +P K + R R   CS   S+ P +T+ YEFSDGS+E+ELRL +G L+++SS+DI VD + 
Sbjct: 37  LPQKHYLRLRPCKCS---STAPVSTTTYEFSDGSSEVELRLNIGGLDVRSSRDILVDTND 93

Query: 114 TCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESW 173
           T L +RV R GS ITLIETN LFD++K +ETIWYID+DQLV+N KKQDP+LKWPDI+ESW
Sbjct: 94  TSLAIRVLRPGSPITLIETNPLFDRVKSSETIWYIDDDQLVVNFKKQDPDLKWPDIMESW 153

Query: 174 ESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM 233
           ESLTAGS QLL+GTSI+LVGDSTE+N+KVA ELA GLGYTPLSTKELLE + KQT+DSW+
Sbjct: 154 ESLTAGSPQLLQGTSIYLVGDSTEINQKVAQELATGLGYTPLSTKELLELYTKQTVDSWL 213

Query: 234 LAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM 293
           LAEGSDSV   E  VLES+SSH RAVVATLGGQ  AA RA KWQHLYAGFTVWLS+TEA+
Sbjct: 214 LAEGSDSVAEAESAVLESISSHARAVVATLGGQHSAAGRAGKWQHLYAGFTVWLSKTEAL 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504258|gb|AFK40195.1| unknown [Medicago truncatula]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 196/226 (86%), Gaps = 1/226 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS 
Sbjct: 57  CKCSFTA-PVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSP 115

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITLI+TN LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKG
Sbjct: 116 ITLIDTNPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKG 175

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+L GDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE 
Sbjct: 176 TSIYLAGDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEG 235

Query: 247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
            VLES+SSHVRA VATLGG+ GAA R+DKW+HLYAGFTVWLSQTEA
Sbjct: 236 TVLESISSHVRAAVATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEA 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403860|ref|NP_565805.1| shikimate kinase like 2 [Arabidopsis thaliana] gi|75100603|sp|O82290.2|SKL2_ARATH RecName: Full=Probable inactive shikimate kinase like 2, chloroplastic; Short=AtSKL2; Flags: Precursor gi|15724242|gb|AAL06514.1|AF412061_1 At2g35500/T32F12.12 [Arabidopsis thaliana] gi|18377827|gb|AAL67100.1| At2g35500/T32F12.12 [Arabidopsis thaliana] gi|20197350|gb|AAC36171.2| expressed protein [Arabidopsis thaliana] gi|330254020|gb|AEC09114.1| shikimate kinase like 2 [Arabidopsis thaliana]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/296 (61%), Positives = 220/296 (74%), Gaps = 12/296 (4%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP- 59

Query: 58  KTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCL 116
              DR   F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L
Sbjct: 60  ---DRFNSFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSL 115

Query: 117 TVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESL 176
            V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESL
Sbjct: 116 AVKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESL 175

Query: 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAE 236
           TAG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAE
Sbjct: 176 TAGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAE 235

Query: 237 GSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
           G DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA
Sbjct: 236 GPDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEA 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823343|ref|XP_002879554.1| hypothetical protein ARALYDRAFT_482510 [Arabidopsis lyrata subsp. lyrata] gi|297325393|gb|EFH55813.1| hypothetical protein ARALYDRAFT_482510 [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (827), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 183/308 (59%), Positives = 220/308 (71%), Gaps = 32/308 (10%)

Query: 1   MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSS------LHK---- 50
           MAA A+        S S NP++   T           +F PI I SS      LH     
Sbjct: 1   MAAFASGLASTIFYSPSLNPLTCQAT-----------LFSPIRIRSSPRVFRGLHSLRRR 49

Query: 51  -----STNVVPIKTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSS 104
                S NV    T DR + F+C N LS++  +T  YEF+DG  E+ELRL+L + E  S 
Sbjct: 50  GFRRFSQNV----TTDRFKSFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGETLSP 104

Query: 105 KDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPEL 164
           KDI VDADGT L V+  R+G  ITL+ETNQLF+KI P+ETIWYIDEDQLV+N+KK D EL
Sbjct: 105 KDISVDADGTSLAVKEKRNGLLITLLETNQLFEKIMPSETIWYIDEDQLVVNMKKVDGEL 164

Query: 165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224
           KWPDIVESWESLTAG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F
Sbjct: 165 KWPDIVESWESLTAGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESF 224

Query: 225 AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFT 284
           +KQTIDSW++AEG DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFT
Sbjct: 225 SKQTIDSWIVAEGPDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFT 284

Query: 285 VWLSQTEA 292
           VW+SQTEA
Sbjct: 285 VWVSQTEA 292

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2062486	387	SKL2 "shikimate kinase-like 2"	0.817	0.728	0.612	1.1e-85
TAIR|locus:2052586	304	SK1 "shikimate kinase 1" [Arab	0.391	0.444	0.298	0.00014
UNIPROTKB|Q5NTH3	307	SK2 "Shikimate kinase 2, chlor	0.292	0.328	0.361	0.00014

TAIR|locus:2062486 SKL2 "shikimate kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 177/289 (61%), Positives = 216/289 (74%)

Query:     5 AATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDR-R 63
             A  ++  SL+ ++      S  +  SSPR   S F  +        S NV+P    DR  
Sbjct:     9 AIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP----DRFN 63

Query:    64 RFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS 123
              F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L V+  R+
Sbjct:    64 SFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRN 122

Query:   124 GSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQL 183
             G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLTAG MQL
Sbjct:   123 GLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQL 182

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
             LKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG DSV  
Sbjct:   183 LKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAE 242

Query:   244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
              E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA
Sbjct:   243 AESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEA 291

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2052586 SK1 "shikimate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
 Identities = 43/144 (29%), Positives = 68/144 (47%)

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
             L G S++LVG        V   ++  LGYT      L+E     T  + +     ++   
Sbjct:   101 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR 160

Query:   244 G-ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEAMG-KLLRVF 300
             G E D L+ LSS  + VV+T GG  GA  R   W++++ G ++WL    EA+  ++  V 
Sbjct:   161 GKETDALKKLSSRYQVVVST-GG--GAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVG 217

Query:   301 VLS---LHLRSVTSYFVRLEFVSS 321
               S   LH  S  +Y V  + +S+
Sbjct:   218 TDSRPLLHDESGDAYSVAFKRLSA 241

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

UNIPROTKB|Q5NTH3 SK2 "Shikimate kinase 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
 Identities = 38/105 (36%), Positives = 52/105 (49%)

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
             L G  I+LVG        VA  LA  LGY+   + +L+E        + +  E S++   
Sbjct:    92 LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151

Query:   243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             + E  VL  LSS  R VVAT GG  GA  R   W+++  G +VWL
Sbjct:   152 DNESSVLRDLSSMRRLVVAT-GG--GAVIRPVNWKYMKKGLSVWL 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      345       345   0.00097  116 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  229 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.36u 0.14s 28.50t   Elapsed:  00:00:01
  Total cpu time:  28.36u 0.14s 28.50t   Elapsed:  00:00:01
  Start:  Sat May 11 00:56:06 2013   End:  Sat May 11 00:56:07 2013

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82290	SKL2_ARATH	No assigned EC number	0.6114	0.8231	0.7338	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015711001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (371 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002215001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (245 aa)				•	•		•		0.508
	GSVIVG00021574001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (190 aa)				•			•		0.425
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•					0.408
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)				•					0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
cd06467	85	cd06467, p23_NUDC_like, p23_like domain of NUD (nu	2e-10
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	5e-09
PLN02199	303	PLN02199, PLN02199, shikimate kinase	1e-05
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	0.001

>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y ++    E+ + + L   E   SKD+ V+     L V V        L++  +L+ K+K
Sbjct: 1   YSWTQTLDEVTVTIPLP--EGTKSKDVKVEITPKHLKVGVKGG---EPLLDG-ELYAKVK 54

Query: 141 PTETIWYI-DEDQLVINLKKQDPELKWPDIV 170
             E+ W + D   L I L+K++    WP +V
Sbjct: 55  VDESTWTLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
            KD+ V+     LTV V   G    L+E   LF  I P E+ W +++ ++ I LKK++P 
Sbjct: 19  KKDVKVEFTPKSLTVSVKGGGGKEYLLEGE-LFGPIDPEESKWTVEDRKIEITLKKKEPG 77

Query: 164 LKWPDIV 170
             WP + 
Sbjct: 78  EWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 142 TETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEK 201
           T +++  DED L    K++  E+K                  L G S++LVG        
Sbjct: 78  TGSVYPFDEDIL----KRKAEEVK----------------PYLNGRSMYLVGMMGSGKTT 117

Query: 202 VALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG-ECDVLESLSSHVRAVV 260
           V   ++  LGYT      L+E     T  + +     ++   G E D L+ LSS  + VV
Sbjct: 118 VGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVV 177

Query: 261 ATLGGQQGAAARADKWQHLYAGFTVWL 287
           +T GG   A  R   W++++ G ++WL
Sbjct: 178 STGGG---AVIRPINWKYMHKGISIWL 201

Length = 303

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 184 LKGTSIFLV-----GDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLA-EG 237
           LKG +I L+     G ST     +   LA  LGY  + T  L+E  A ++I   +   EG
Sbjct: 2   LKGPNIVLIGFMGAGKST-----IGRLLAKRLGYDFIDTDHLIEARAGKSI-PEIFEEEG 55

Query: 238 SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWL 287
             +    E +VL  L +    V++T GG  GA  R +    L   G  V+L
Sbjct: 56  EAAFRELEEEVLAELLARHNLVIST-GG--GAVLREENRALLRERGTVVYL 103

Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.97
PLN02199	303	shikimate kinase	99.94
PRK13948	182	shikimate kinase; Provisional	99.93
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.92
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.91
PRK00625	173	shikimate kinase; Provisional	99.91
PRK13949	169	shikimate kinase; Provisional	99.9
PRK13946	184	shikimate kinase; Provisional	99.89
PRK05057	172	aroK shikimate kinase I; Reviewed	99.88
PRK03731	171	aroL shikimate kinase II; Reviewed	99.88
PRK13947	171	shikimate kinase; Provisional	99.87
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.83
PRK00131	175	aroK shikimate kinase; Reviewed	99.82
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.81
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.78
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.74
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.7
PRK09169	2316	hypothetical protein; Validated	99.66
PRK03839	180	putative kinase; Provisional	99.51
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.42
PRK14530	215	adenylate kinase; Provisional	99.39
PRK06217	183	hypothetical protein; Validated	99.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.3
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.29
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.29
PRK14532	188	adenylate kinase; Provisional	99.28
PRK04182	180	cytidylate kinase; Provisional	99.23
PRK05541	176	adenylylsulfate kinase; Provisional	99.19
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.15
PHA02530	300	pseT polynucleotide kinase; Provisional	99.14
PRK08118	167	topology modulation protein; Reviewed	99.13
PRK06547	172	hypothetical protein; Provisional	99.11
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.09
PTZ00088	229	adenylate kinase 1; Provisional	99.06
PRK00279	215	adk adenylate kinase; Reviewed	99.05
PLN02674	244	adenylate kinase	99.04
PRK09825	176	idnK D-gluconate kinase; Provisional	99.03
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.03
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.01
PRK13975	196	thymidylate kinase; Provisional	99.01
PRK11545	163	gntK gluconate kinase 1; Provisional	99.01
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.01
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	98.97
PRK03846	198	adenylylsulfate kinase; Provisional	98.96
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.95
PRK00889	175	adenylylsulfate kinase; Provisional	98.95
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.95
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	98.95
PRK13808	333	adenylate kinase; Provisional	98.94
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.94
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.93
PRK14531	183	adenylate kinase; Provisional	98.93
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.92
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.9
PRK01184	184	hypothetical protein; Provisional	98.88
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.85
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.84
PLN02165	334	adenylate isopentenyltransferase	98.84
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.83
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	98.82
PRK14527	191	adenylate kinase; Provisional	98.81
PRK07261	171	topology modulation protein; Provisional	98.8
PRK06762	166	hypothetical protein; Provisional	98.8
PRK02496	184	adk adenylate kinase; Provisional	98.78
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	98.78
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.73
PRK14526	211	adenylate kinase; Provisional	98.71
PLN02200	234	adenylate kinase family protein	98.71
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.69
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.68
PRK14528	186	adenylate kinase; Provisional	98.66
PRK08233	182	hypothetical protein; Provisional	98.63
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.63
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.62
PLN02459	261	probable adenylate kinase	98.62
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	98.59
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.59
PRK04040	188	adenylate kinase; Provisional	98.51
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.5
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.5
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.49
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.47
PRK14529	223	adenylate kinase; Provisional	98.47
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	98.47
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.46
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.45
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.44
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	98.43
PLN02422	232	dephospho-CoA kinase	98.4
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	98.4
PRK08356	195	hypothetical protein; Provisional	98.36
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.36
PRK00023	225	cmk cytidylate kinase; Provisional	98.34
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.3
PLN02842	505	nucleotide kinase	98.3
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.29
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.28
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.27
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.27
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.22
PRK05480	209	uridine/cytidine kinase; Provisional	98.22
PTZ00451	244	dephospho-CoA kinase; Provisional	98.21
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.14
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.13
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.1
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.07
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.07
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.07
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.04
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.95
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.93
PLN02840	421	tRNA dimethylallyltransferase	97.92
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.92
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.91
COG0645	170	Predicted kinase [General function prediction only	97.91
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.91
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.91
PF00004	132	AAA: ATPase family associated with various cellula	97.89
PLN02748	468	tRNA dimethylallyltransferase	97.87
PRK13973	213	thymidylate kinase; Provisional	97.86
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.86
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.86
cd06463	84	p23_like Proteins containing this p23_like domain	97.85
PRK06696	223	uridine kinase; Validated	97.85
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.84
PRK12338	319	hypothetical protein; Provisional	97.84
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.82
PRK00698	205	tmk thymidylate kinase; Validated	97.81
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.81
PRK07667	193	uridine kinase; Provisional	97.8
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	97.79
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.76
PRK00300	205	gmk guanylate kinase; Provisional	97.72
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.72
PRK06761	282	hypothetical protein; Provisional	97.7
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.69
COG4639	168	Predicted kinase [General function prediction only	97.69
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.68
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.62
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.62
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.6
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.6
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.59
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.57
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.57
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.55
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.54
PRK14738	206	gmk guanylate kinase; Provisional	97.52
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	97.51
PLN02772	398	guanylate kinase	97.48
smart00382	148	AAA ATPases associated with a variety of cellular	97.47
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.43
PTZ00301	210	uridine kinase; Provisional	97.42
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.42
PRK09087	226	hypothetical protein; Validated	97.41
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.41
PRK06893	229	DNA replication initiation factor; Validated	97.35
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.35
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	97.35
PRK14737	186	gmk guanylate kinase; Provisional	97.34
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.33
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.32
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.31
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.31
PLN02348	395	phosphoribulokinase	97.31
PRK13974	212	thymidylate kinase; Provisional	97.3
PHA00729	226	NTP-binding motif containing protein	97.24
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.23
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.23
PRK06620	214	hypothetical protein; Validated	97.22
PRK08084	235	DNA replication initiation factor; Provisional	97.21
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.21
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.2
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.18
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.18
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.17
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.16
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.15
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	97.15
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.14
PF13173	128	AAA_14: AAA domain	97.13
PRK15453	290	phosphoribulokinase; Provisional	97.06
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.0
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.97
cd02034	116	CooC The accessory protein CooC, which contains a	96.95
PHA02244	383	ATPase-like protein	96.94
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.91
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	96.9
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.89
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.89
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.88
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.88
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.88
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.87
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.86
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.85
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.82
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.82
CHL00195	489	ycf46 Ycf46; Provisional	96.8
PLN02924	220	thymidylate kinase	96.76
CHL00181	287	cbbX CbbX; Provisional	96.71
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.69
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.69
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.68
CHL00176	638	ftsH cell division protein; Validated	96.67
PRK10646	153	ADP-binding protein; Provisional	96.64
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.64
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.64
PRK10416	318	signal recognition particle-docking protein FtsY;	96.64
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.63
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	96.62
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	96.59
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.58
PRK04195	482	replication factor C large subunit; Provisional	96.58
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.58
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.57
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.57
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.56
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.51
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.5
PRK07429	327	phosphoribulokinase; Provisional	96.5
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.48
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.48
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.48
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.46
PRK13342	413	recombination factor protein RarA; Reviewed	96.45
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.45
PF07726	131	AAA_3: ATPase family associated with various cellu	96.42
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	96.41
PRK05439	311	pantothenate kinase; Provisional	96.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.4
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.4
COG0714	329	MoxR-like ATPases [General function prediction onl	96.38
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.37
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.35
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.33
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.31
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.3
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.3
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.23
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.23
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.23
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.21
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.2
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.17
PRK13695	174	putative NTPase; Provisional	96.16
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.15
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.14
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.12
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.11
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.08
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.08
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.08
COG0802	149	Predicted ATPase or kinase [General function predi	96.07
PRK08727	233	hypothetical protein; Validated	96.06
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.03
PRK09183	259	transposase/IS protein; Provisional	96.02
PRK08181	269	transposase; Validated	96.02
PF05729	166	NACHT: NACHT domain	96.01
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.99
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.99
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	95.98
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.98
PRK06526	254	transposase; Provisional	95.98
cd03112	158	CobW_like The function of this protein family is u	95.98
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	95.96
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.95
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	95.95
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	95.94
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.93
cd03114	148	ArgK-like The function of this protein family is u	95.92
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	95.9
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.89
TIGR00959	428	ffh signal recognition particle protein. This mode	95.88
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.87
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	95.87
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.86
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.86
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.86
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.84
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.84
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	95.83
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.81
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	95.79
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	95.78
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	95.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.75
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.73
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.71
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.71
PHA02544	316	44 clamp loader, small subunit; Provisional	95.71
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.7
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.7
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.69
cd06488	87	p23_melusin_like p23_like domain similar to the C-	95.69
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.69
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	95.69
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	95.69
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.67
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.66
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.66
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.66
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.65
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.65
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.65
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.65
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.65
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.64
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.62
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.62
PRK05642	234	DNA replication initiation factor; Validated	95.61
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.61
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.6
PRK14974	336	cell division protein FtsY; Provisional	95.59
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.57
PRK06835	329	DNA replication protein DnaC; Validated	95.56
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	95.55
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.55
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.54
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.52
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.51
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.51
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.51
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.5
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.5
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.49
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.48
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.48
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.48
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	95.47
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.46
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.46
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.45
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	95.44
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.43
PRK12377	248	putative replication protein; Provisional	95.43
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.42
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.41
PRK12402	337	replication factor C small subunit 2; Reviewed	95.41
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.4
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.4
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.39
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.38
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.37
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.37
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.35
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.34
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.33
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.32
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.31
CHL00095	821	clpC Clp protease ATP binding subunit	95.3
CHL00206	2281	ycf2 Ycf2; Provisional	95.3
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.29
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.29
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.29
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.29
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.28
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.28
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.27
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.26
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	95.25
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.24
PRK10867	433	signal recognition particle protein; Provisional	95.23
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.22
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.21
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	95.21
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	95.2
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	95.2
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.18
PRK14088	440	dnaA chromosomal replication initiation protein; P	95.18
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.17
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	95.16
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.15
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	95.14
COG1341	398	Predicted GTPase or GTP-binding protein [General f	95.13
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.13
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.13
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	95.12
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.12
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	95.11
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.11
cd00298	80	ACD_sHsps_p23-like This domain family includes the	95.11
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.1
PRK10908	222	cell division protein FtsE; Provisional	95.1
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	95.09
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.09
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.09
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.08
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.08
PRK13341	725	recombination factor protein RarA/unknown domain f	95.07
PLN03025	319	replication factor C subunit; Provisional	95.07
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	95.06
cd03215	182	ABC_Carb_Monos_II This family represents domain II	95.06
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.06
PF13479	213	AAA_24: AAA domain	95.05
PLN02318	656	phosphoribulokinase/uridine kinase	95.05
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	95.05
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	95.05
PLN02796	347	D-glycerate 3-kinase	95.05
PRK13768	253	GTPase; Provisional	95.04
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.04
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.03
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.03
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	95.03
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	95.03
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.02
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.02
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.02
COG3709	192	Uncharacterized component of phosphonate metabolis	95.01
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.01
cd03234	226	ABCG_White The White subfamily represents ABC tran	95.01
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.01
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	95.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.99
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.99
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	94.99
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	94.98
cd03246	173	ABCC_Protease_Secretion This family represents the	94.98
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	94.98
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.97
cd01394	218	radB RadB. The archaeal protein radB shares simila	94.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.96
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.95
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	94.95
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.94
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	94.94
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	94.93
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.92
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	94.92
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	94.92
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	94.92
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	94.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	94.91
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	94.91
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.91
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	94.9
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.9
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.89
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.89
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.89
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	94.88
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.88
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	94.88
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	94.88
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.87
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.87
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	94.87
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.87
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	94.86
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	94.85
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	94.85
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	94.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	94.84
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	94.84
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.82
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	94.81
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.8
PRK04296	190	thymidine kinase; Provisional	94.78
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	94.78
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	94.78
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	94.78
KOG0736	953	consensus Peroxisome assembly factor 2 containing	94.77
PRK08116	268	hypothetical protein; Validated	94.77
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.76
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	94.76
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	94.75
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	94.75
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.75
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	94.74
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.74
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	94.74
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	94.73
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	94.73
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	94.73
PRK15455	644	PrkA family serine protein kinase; Provisional	94.73
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	94.73
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	94.73
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	94.72
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	94.72
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.71
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	94.7
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.7
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.69
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.68
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.68
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.68
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	94.68
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.67
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.66
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	94.66
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	94.66
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	94.65
PRK10865	857	protein disaggregation chaperone; Provisional	94.65

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=6.6e-32  Score=242.81  Aligned_cols=121  Identities=23%  Similarity=0.235  Sum_probs=109.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      .++|+|||||||||||||+.||++|+++|+|+|++||+.+||+|++||+++||++||++|.++++++....+.|||||||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG   81 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG   81 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             CCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccccc
Q 019172          266 QQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSY  312 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~  312 (345)
                         ++++++||.+|+ +|.||||+++.++. ..|  ......||+...
T Consensus        82 ---~v~~~enr~~l~~~g~vv~L~~~~e~l-~~R--l~~~~~RPll~~  123 (172)
T COG0703          82 ---AVLSEENRNLLKKRGIVVYLDAPFETL-YER--LQRDRKRPLLQT  123 (172)
T ss_pred             ---cccCHHHHHHHHhCCeEEEEeCCHHHH-HHH--hccccCCCcccC
Confidence               599999999998 79999999999976 555  333344655443

>PLN02199 shikimate kinase

Probab=99.94  E-value=2.1e-26  Score=222.68  Aligned_cols=129  Identities=26%  Similarity=0.377  Sum_probs=113.2

Q ss_pred             HhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH-HcCchhhhhhccChHHHHHHHHHHHHHHhcCC
Q 019172          178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV  256 (345)
Q Consensus       178 a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~-~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~  256 (345)
                      ..+...+.+++|+|||+|||||||||+.||+.||++|||+|.++++. .|+++.+||+.+||+.||++|.++|+++....
T Consensus        94 ~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~  173 (303)
T PLN02199         94 EEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY  173 (303)
T ss_pred             HHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence            34557888999999999999999999999999999999999999997 59999999999999999999999999998777


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhcccccccc
Q 019172          257 RAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVT  310 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~  310 (345)
                      ++|||||||   ++++++||++|+.|++|||+++.+.. ..|+.......||+.
T Consensus       174 ~~VIStGGG---~V~~~~n~~~L~~G~vV~Ldas~E~l-~~RL~~~~~~~RPLL  223 (303)
T PLN02199        174 QVVVSTGGG---AVIRPINWKYMHKGISIWLDVPLEAL-AHRIAAVGTDSRPLL  223 (303)
T ss_pred             CEEEECCCc---ccCCHHHHHHHhCCeEEEEECCHHHH-HHHHhhcCCCCCCcC
Confidence            899999999   59999999999999999999999876 555332112345554

>PRK13948 shikimate kinase; Provisional

Probab=99.93  E-value=7.3e-26  Score=204.44  Aligned_cols=110  Identities=20%  Similarity=0.173  Sum_probs=103.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      .+.+|+|+|+|||||||+|+.||+.||++|+|+|.++++.+|++++++|+.+||++||++|.+++++++...+.||||||
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg   88 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGG   88 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999877889999999


Q ss_pred             CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      |   ++++++|++.|+ .|.+|||+++.++. ..|
T Consensus        89 G---~v~~~~n~~~l~~~g~vV~L~~~~e~l-~~R  119 (182)
T PRK13948         89 G---TFMHEENRRKLLSRGPVVVLWASPETI-YER  119 (182)
T ss_pred             c---EEcCHHHHHHHHcCCeEEEEECCHHHH-HHH
Confidence            9   599999999997 79999999999876 445

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.92  E-value=6.9e-25  Score=191.29  Aligned_cols=101  Identities=20%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             CCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHH
Q 019172          195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARAD  274 (345)
Q Consensus       195 ~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~  274 (345)
                      |||||||||++||+.||++|+|+|++|++.+|+++++++.++||+.||+.|.++|+++....++|||||||   ++++++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG---~~~~~~   77 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGG---IVLKEE   77 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TT---GGGSHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCC---CcCcHH
Confidence            79999999999999999999999999999999999999999999999999999999999887999999999   599999


Q ss_pred             HHHHHh-cCcEEEEEcChhhhchhhh
Q 019172          275 KWQHLY-AGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       275 ~r~~L~-~G~VV~Ld~s~a~~~~~Rv  299 (345)
                      ++++|+ .|.+|||+.+++.. ..|.
T Consensus        78 ~~~~L~~~g~vI~L~~~~~~l-~~Rl  102 (158)
T PF01202_consen   78 NRELLKENGLVIYLDADPEEL-AERL  102 (158)
T ss_dssp             HHHHHHHHSEEEEEE--HHHH-HHHH
T ss_pred             HHHHHHhCCEEEEEeCCHHHH-HHHH
Confidence            999998 89999999999866 5553

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.91  E-value=1.2e-24  Score=224.64  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=101.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      +...|+|||||||||||+|+.||++||++|+|+|++||+.+|+++++||+++||++||++|.++|+++....+.||||||
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG   84 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG   84 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            45689999999999999999999999999999999999999999999999999999999999999998866789999999


Q ss_pred             CCCcccCcHHHHHHH----h-cCcEEEEEcChhhhchhh
Q 019172          265 GQQGAAARADKWQHL----Y-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       265 G~~~avlr~~~r~~L----~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      |   ++++++||++|    + +|.+|||+++.++. ..|
T Consensus        85 G---~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l-~~R  119 (542)
T PRK14021         85 G---APMTPSTQHALASYIAHGGRVVYLDADPKEA-MER  119 (542)
T ss_pred             c---hhCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHH
Confidence            9   59999999976    4 58999999999876 444

>PRK00625 shikimate kinase; Provisional

Probab=99.91  E-value=2.5e-24  Score=192.74  Aligned_cols=107  Identities=25%  Similarity=0.235  Sum_probs=98.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC----chhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~----sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt  262 (345)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|+++++.+|+    ++.++++.+||++||+.|.++++++.. .+.||+|
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~   79 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence            57999999999999999999999999999999999999998    999999999999999999999999875 6789999


Q ss_pred             CCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          263 LGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      |||   +++.+++++.|+ .|.+|||+++.++. ..|
T Consensus        80 GGg---~~~~~e~~~~l~~~~~Vv~L~~~~e~l-~~R  112 (173)
T PRK00625         80 GGG---TLMIEPSYAHIRNRGLLVLLSLPIATI-YQR  112 (173)
T ss_pred             CCC---ccCCHHHHHHHhcCCEEEEEECCHHHH-HHH
Confidence            999   599999999997 68999999998865 444

>PRK13949 shikimate kinase; Provisional

Probab=99.90  E-value=1.4e-23  Score=186.30  Aligned_cols=108  Identities=23%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|+|||||||+|+.||+.+|++|+|+|.++++..|+++.++++..|++.||++|.++++++....++||||||| 
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg-   80 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG-   80 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc-
Confidence            4799999999999999999999999999999999999999999999999999999999999999987777899999999 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                        ++..++++++|+ .|.+|||+++.+.. ..|
T Consensus        81 --~~~~~~~~~~l~~~~~vi~L~~~~~~~-~~R  110 (169)
T PRK13949         81 --APCFFDNMELMNASGTTVYLKVSPEVL-FVR  110 (169)
T ss_pred             --ccCCHHHHHHHHhCCeEEEEECCHHHH-HHH
Confidence              489999999997 79999999999875 445

>PRK13946 shikimate kinase; Provisional

Probab=99.89  E-value=9.2e-23  Score=181.98  Aligned_cols=113  Identities=27%  Similarity=0.258  Sum_probs=104.3

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA  261 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA  261 (345)
                      ..+..++|+|+|++||||||+|+.||++||++|+|+|.++++..|+++.+++...|+++|++.|.++++++....++||+
T Consensus         6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~   85 (184)
T PRK13946          6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLA   85 (184)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999877789999


Q ss_pred             cCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          262 TLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       262 tGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      ||||   .++.+++|+.|+ +|.+|||++|.+.. ..|
T Consensus        86 ~ggg---~~~~~~~r~~l~~~~~~v~L~a~~e~~-~~R  119 (184)
T PRK13946         86 TGGG---AFMNEETRAAIAEKGISVWLKADLDVL-WER  119 (184)
T ss_pred             CCCC---CcCCHHHHHHHHcCCEEEEEECCHHHH-HHH
Confidence            9998   489999999997 79999999999865 455

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.88  E-value=2.2e-22  Score=178.63  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=106.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      +.++|+|+|++||||||+|+.||+.+|++|+|+|..+++..|+++.++++..|++.||+.|.++++++....++||++||
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg   82 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG   82 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999998877789999999


Q ss_pred             CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccc
Q 019172          265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVT  310 (345)
Q Consensus       265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~  310 (345)
                      |   +++++++|++|+ .|.+|||+++.+.. ..|  +.....||+.
T Consensus        83 g---~v~~~~~~~~l~~~~~vv~L~~~~e~~-~~R--i~~~~~rP~~  123 (172)
T PRK05057         83 G---SVKSRETRNRLSARGVVVYLETTIEKQ-LAR--TQRDKKRPLL  123 (172)
T ss_pred             c---hhCCHHHHHHHHhCCEEEEEeCCHHHH-HHH--HhCCCCCCCC
Confidence            8   589999999997 79999999999865 445  2333445544

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.88  E-value=5.2e-22  Score=173.07  Aligned_cols=141  Identities=19%  Similarity=0.265  Sum_probs=112.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|++||||||+|+.||++||++|+|.|.+++...|+++.+++++.||++|++.|.++++.+. ..+.||+|||| 
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg-   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG-   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC-
Confidence            5799999999999999999999999999999999999999999999999999999999999997664 46789999999 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhh-------------------ccccccccccceeeeeeccCCCCh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVL-------------------SLHLRSVTSYFVRLEFVSSFSRTN  326 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~-------------------~~h~R~~~~~~~~le~i~~~~r~~  326 (345)
                        ++++++++++|+ .|.+|||+++++.. ..|...+                   ..+.+....|.....++.|-.++.
T Consensus        81 --~vl~~~~~~~l~~~~~~v~l~~~~~~~-~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~~~~  157 (171)
T PRK03731         81 --IILTEENRHFMRNNGIVIYLCAPVSVL-ANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDATQPP  157 (171)
T ss_pred             --ccCCHHHHHHHHhCCEEEEEECCHHHH-HHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCCCCH
Confidence              489999999997 79999999998865 3332211                   111112222322234667777788


Q ss_pred             HHHhhh
Q 019172          327 EHIMAR  332 (345)
Q Consensus       327 ~~~~~~  332 (345)
                      |+|..+
T Consensus       158 e~v~~~  163 (171)
T PRK03731        158 SQVVSE  163 (171)
T ss_pred             HHHHHH
Confidence            888665

>PRK13947 shikimate kinase; Provisional

Probab=99.87  E-value=7.2e-22  Score=171.58  Aligned_cols=108  Identities=20%  Similarity=0.240  Sum_probs=99.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|+|||||||+|+.||++||++|+|.|.++++..|+++.+++...|+++|++.|.++++++....++||+|||| 
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g-   80 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG-   80 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC-
Confidence            3799999999999999999999999999999999999999999999999999999999999999998777899999998 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                        .++++++++.|+ .|.+|||+++.+.. ..|
T Consensus        81 --~vl~~~~~~~l~~~~~vv~L~~~~~~l-~~R  110 (171)
T PRK13947         81 --VVLNPENVVQLRKNGVVICLKARPEVI-LRR  110 (171)
T ss_pred             --CcCCHHHHHHHHhCCEEEEEECCHHHH-HHH
Confidence              489999999997 68999999998865 444

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.83  E-value=2.6e-20  Score=190.59  Aligned_cols=108  Identities=20%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      |+|+|+|+|||||||+|+.||+.||++|+|+|+++++..|+++.++++++|+++||++|.++++++....+.||+|||| 
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg-   79 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG-   79 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc-
Confidence            5799999999999999999999999999999999999999999999999999999999999999998777899999999 


Q ss_pred             CcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                        +++++++|+.|+.+.+|||+++.++. ..|
T Consensus        80 --vv~~~~~r~~l~~~~vI~L~as~e~l-~~R  108 (488)
T PRK13951         80 --VVIDPENRELLKKEKTLFLYAPPEVL-MER  108 (488)
T ss_pred             --cccChHHHHHHhcCeEEEEECCHHHH-HHH
Confidence              58999999999877799999998865 444

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.82  E-value=9e-20  Score=156.76  Aligned_cols=107  Identities=29%  Similarity=0.334  Sum_probs=98.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      .++.|+|+|++||||||+|+.||+.||++|+|.|+++++..|.++.+++..+|++.|++.|.++++++....+.||++||
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~   82 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGG   82 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999998876678999998


Q ss_pred             CCCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                      |   +++.+.+|+.|+ .+.+|||++|.+..
T Consensus        83 ~---~~~~~~~r~~l~~~~~~v~l~~~~~~~  110 (175)
T PRK00131         83 G---AVLREENRALLRERGTVVYLDASFEEL  110 (175)
T ss_pred             C---EeecHHHHHHHHhCCEEEEEECCHHHH
Confidence            8   588999999995 78999999998864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.81  E-value=2.1e-19  Score=152.40  Aligned_cols=104  Identities=31%  Similarity=0.363  Sum_probs=95.4

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ  267 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~  267 (345)
                      +|+|+|++||||||+|+.||+.||++++|.|+++++..|+++.++++..|++.|++.|.+++..+....+.||++|+|  
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~--   78 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGG--   78 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCC--
Confidence            589999999999999999999999999999999999999999999999999999999999999988888899999888  


Q ss_pred             cccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          268 GAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       268 ~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                       +++...+++.+. .+.+|||++|.+..
T Consensus        79 -~i~~~~~~~~~~~~~~~i~l~~~~e~~  105 (154)
T cd00464          79 -AVLREENRRLLLENGIVVWLDASPEEL  105 (154)
T ss_pred             -ccCcHHHHHHHHcCCeEEEEeCCHHHH
Confidence             488888877765 79999999998755

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.78  E-value=1.9e-18  Score=166.83  Aligned_cols=107  Identities=23%  Similarity=0.277  Sum_probs=97.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhc-CCCEEEEcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS-HVRAVVATL  263 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~-~~~~VIAtG  263 (345)
                      .+++|+|+|++||||||+|+.||+.||++|+|+|..+++..|+++.+++...|++.|+++|++++.++.. ...+||++|
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G  211 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG  211 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999765 345899999


Q ss_pred             CCCCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          264 GGQQGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       264 GG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                      ||   ++..+.++..+. .+.+|||+++.++.
T Consensus       212 gg---~v~~~~~~~~l~~~~~~V~L~a~~e~~  240 (309)
T PRK08154        212 GG---IVSEPATFDLLLSHCYTVWLKASPEEH  240 (309)
T ss_pred             Cc---hhCCHHHHHHHHhCCEEEEEECCHHHH
Confidence            98   488888898775 78999999998854

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=6e-18  Score=149.84  Aligned_cols=137  Identities=18%  Similarity=0.112  Sum_probs=110.4

Q ss_pred             EcCCCCChHHHHHHHHHhhCCceeeCcHHHH-----HHH-cCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          192 VGDSTEVNEKVALELAVGLGYTPLSTKELLE-----TFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       192 IG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE-----~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      ||++||||||||+.||++||++|||+|+++-     ++. |.++.   +++.|.|...+-.++..........||+|++ 
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSA-   76 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACSA-   76 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecHH-
Confidence            6999999999999999999999999999964     332 43433   4567777777766665555554558889986 


Q ss_pred             CCcccCcHHHHHHHhc---C-cEEEEEcChhhhchhhhhhhccccc---cccccceeeeee--------ccCCCChHHHh
Q 019172          266 QQGAAARADKWQHLYA---G-FTVWLSQTEAMGKLLRVFVLSLHLR---SVTSYFVRLEFV--------SSFSRTNEHIM  330 (345)
Q Consensus       266 ~~~avlr~~~r~~L~~---G-~VV~Ld~s~a~~~~~Rv~v~~~h~R---~~~~~~~~le~i--------~~~~r~~~~~~  330 (345)
                           +++.||+.|+.   + .+|||+.+.++. ..|...+..|.|   .+.+||..||.+        .|...+.|+|.
T Consensus        77 -----LKr~YRD~LR~~~~~~~Fv~L~g~~~~i-~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~~~e~vv  150 (161)
T COG3265          77 -----LKRSYRDLLREANPGLRFVYLDGDFDLI-LERMKARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQPPEEVV  150 (161)
T ss_pred             -----HHHHHHHHHhccCCCeEEEEecCCHHHH-HHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCCCHHHHH
Confidence                 99999999983   2 489999999988 888888889988   789999999988        67899999998


Q ss_pred             hhcchhhh
Q 019172          331 ARKPAVMK  338 (345)
Q Consensus       331 ~~~~~~~~  338 (345)
                      ++--+..+
T Consensus       151 ~~~~~~l~  158 (161)
T COG3265         151 AQALAWLK  158 (161)
T ss_pred             HHHHHHHh
Confidence            87555444

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=4.1e-17  Score=145.98  Aligned_cols=124  Identities=19%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH-----HHHH-cCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ETFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI-----E~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      +..|+++|++||||||+|++|++.||++|+|+|+++     |++. |.++.   +.+.|.|...+.....+++.+.+.+|
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vV   88 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVV   88 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEE
Confidence            457999999999999999999999999999999996     3332 44444   56789999999888888988888899


Q ss_pred             EEcCCCCCcccCcHHHHHHHhc----C----------cEEEEEcChhhhchhhhhhhccccc---cccccceeeeee
Q 019172          260 VATLGGQQGAAARADKWQHLYA----G----------FTVWLSQTEAMGKLLRVFVLSLHLR---SVTSYFVRLEFV  319 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~~----G----------~VV~Ld~s~a~~~~~Rv~v~~~h~R---~~~~~~~~le~i  319 (345)
                      +||++      ++..||+.|+.    |          .+|||.++.+++ ..|..-+..|.|   .+.+||..||.+
T Consensus        89 lACSa------LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi-~~Rl~~R~gHFMp~~lleSQf~~LE~p  158 (191)
T KOG3354|consen   89 LACSA------LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVI-LKRLKKRKGHFMPADLLESQFATLEAP  158 (191)
T ss_pred             EEhHH------HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHH-HHHHhhcccccCCHHHHHHHHHhccCC
Confidence            99996      99999999973    1          589999998877 788777778888   678999999887

>PRK09169 hypothetical protein; Validated

Probab=99.66  E-value=2.6e-16  Score=179.22  Aligned_cols=122  Identities=12%  Similarity=-0.002  Sum_probs=108.4

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA  261 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA  261 (345)
                      +.|.+.+|+|||+||+||||||+.||..|+++|+|+|..|++..|++|.+||..+|  +||+.|.+.++++.. ..+||+
T Consensus      2106 ~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLS 2182 (2316)
T PRK09169       2106 ERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR-WEVVLP 2182 (2316)
T ss_pred             HHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEe
Confidence            46778999999999999999999999999999999999999999999999999999  999999999999886 679999


Q ss_pred             cCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccccc
Q 019172          262 TLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSY  312 (345)
Q Consensus       262 tGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~  312 (345)
                      +|||   ++..+++|+.|+ +|.+|||..+.++. ..|+  .....|++...
T Consensus      2183 TGGG---av~~~enr~~L~~~GlvV~L~an~~tl-~~Rt--y~g~NRPLL~~ 2228 (2316)
T PRK09169       2183 AEGF---GAAVEQARQALGAKGLRVMRINNGFAA-PDTT--YAGLNVNLRTA 2228 (2316)
T ss_pred             CCCC---cccCHHHHHHHHHCCEEEEEECCHHHH-HHHh--ccCCCCccccC
Confidence            9999   599999999997 89999999999865 4553  22345666543

>PRK03839 putative kinase; Provisional

Probab=99.51  E-value=4.1e-14  Score=124.83  Aligned_cols=96  Identities=18%  Similarity=0.015  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      |.|+|+|+|||||||+|+.||+++|++|+|+|+++++.   .+.+.+..+|+..|+.+|..+++.+. ..+ ||.+|.- 
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-vIidG~~-   74 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK---GIGEEKDDEMEIDFDKLAYFIEEEFK-EKN-VVLDGHL-   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc---CCcccCChhhhcCHHHHHHHHHHhcc-CCC-EEEEecc-
Confidence            46999999999999999999999999999999998753   46667777888899999998876543 334 5555531 


Q ss_pred             CcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                               ...+..+.+|||++++++. ..|
T Consensus        75 ---------~~l~~~~~vi~L~~~~~~~-~~R   96 (180)
T PRK03839         75 ---------SHLLPVDYVIVLRAHPKII-KER   96 (180)
T ss_pred             ---------ccccCCCEEEEEECCHHHH-HHH
Confidence                     1122468899999999876 444

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.42  E-value=1e-12  Score=113.84  Aligned_cols=101  Identities=16%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH-----H-HcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~-----~-~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt  262 (345)
                      |+|+|++||||||+|+.|++.+|+.++|.|++...     . .|....   ...++++++.++..+...+..+..+||++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~   77 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLN---DDDRWPWLQNLNDASTAAAAKNKVGIITC   77 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCC---hhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            67999999999999999999999999999997432     1 133222   34567888888877776666665568877


Q ss_pred             CCCCCcccCcHHHHHHHh-cC---cEEEEEcChhhhchhhh
Q 019172          263 LGGQQGAAARADKWQHLY-AG---FTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv  299 (345)
                      +.      +++.+|+.++ .+   .+|||+++.++. ..|.
T Consensus        78 t~------~~~~~r~~~~~~~~~~~~i~l~~~~e~~-~~R~  111 (163)
T TIGR01313        78 SA------LKRHYRDILREAEPNLHFIYLSGDKDVI-LERM  111 (163)
T ss_pred             cc------cHHHHHHHHHhcCCCEEEEEEeCCHHHH-HHHH
Confidence            53      6778888886 33   579999998865 5553

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14530 adenylate kinase; Provisional

Probab=99.39  E-value=4.4e-12  Score=115.60  Aligned_cols=108  Identities=14%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChH---------HHHHHHHHHHHHHh-c
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD---------SVVNGECDVLESLS-S  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee---------~FRelE~~vL~~L~-~  254 (345)
                      .+.+|+|+|+|||||||+|+.||+.+|+++|++|+++++..++++.++....|..         ...+.+..++++.. .
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999999999999988876665544333322         22235556665543 3


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhh
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv  299 (345)
                      ..++||. |  +   +.+.+.++.|.    .+.+|||+++.++. ..|.
T Consensus        82 ~~~~Ild-G--~---pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l-~~Rl  123 (215)
T PRK14530         82 ADGFVLD-G--Y---PRNLEQAEYLESITDLDVVLYLDVSEEEL-VDRL  123 (215)
T ss_pred             CCCEEEc-C--C---CCCHHHHHHHHHhcCCCEEEEEeCCHHHH-HHHH
Confidence            4556775 3  2   56666666663    47899999999866 4453

>PRK06217 hypothetical protein; Validated

Probab=99.39  E-value=1.4e-12  Score=116.17  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|++||||||+|+.||+.||++++|+|+++++..+.+..    ..+...  +.+..+++.+....++||+ |+  
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~vi~-G~--   72 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFT----TKRPPE--ERLRLLLEDLRPREGWVLS-GS--   72 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCcc----ccCCHH--HHHHHHHHHHhcCCCEEEE-cc--
Confidence            57999999999999999999999999999999999865443311    123332  2244555556555677887 33  


Q ss_pred             CcccCcHHHHHHH-h-cCcEEEEEcChhhhchhhh
Q 019172          267 QGAAARADKWQHL-Y-AGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       267 ~~avlr~~~r~~L-~-~G~VV~Ld~s~a~~~~~Rv  299 (345)
                         ...  ..+.+ . .+.+|||++|.++. ..|.
T Consensus        73 ---~~~--~~~~~~~~~d~~i~Ld~~~~~~-~~Rl  101 (183)
T PRK06217         73 ---ALG--WGDPLEPLFDLVVFLTIPPELR-LERL  101 (183)
T ss_pred             ---HHH--HHHHHHhhCCEEEEEECCHHHH-HHHH
Confidence               222  22223 2 68899999999866 4443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.30  E-value=2.2e-12  Score=115.14  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=81.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHH---------------
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE---------------  250 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~---------------  250 (345)
                      +..|+|+|++|||||||+++||..++.++++.|..+.....+...+++...+++.|+..|...+.               
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            46799999999999999999999999999999998887666566677777788888887655442               


Q ss_pred             --HHhcCCCEEEEcCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhh
Q 019172          251 --SLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       251 --~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv  299 (345)
                        +..+....||+.|++    ......++.+. .+.+|||++|.++. ..|.
T Consensus        82 ~~~~l~~g~~VI~~G~~----~~~~~~~~~~~~~~~vi~l~~s~e~l-~~RL  128 (186)
T PRK10078         82 IDLWLHAGFDVLVNGSR----AHLPQARARYQSALLPVCLQVSPEIL-RQRL  128 (186)
T ss_pred             HHHHHhCCCEEEEeChH----HHHHHHHHHcCCCEEEEEEeCCHHHH-HHHH
Confidence              122334567777765    34455566554 57799999998865 5554

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.29  E-value=2.4e-12  Score=127.14  Aligned_cols=92  Identities=21%  Similarity=0.207  Sum_probs=73.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCc------eeeCcHHH-----HHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~------fID~D~lI-----E~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~  257 (345)
                      ++|+|++||||||+|+.|++.|+..      ++|.|++|     +...|+++++++     ..||+.-.+.|+      +
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~i~~~le------~   70 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQELLKYLE------H   70 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHHHHHHHH------H
Confidence            5799999999999999999998754      99999999     888899999886     568843333333      4


Q ss_pred             EEEEcCCCCCcccC----------cHHHHHHHh-cCcEEEEEcChhhh
Q 019172          258 AVVATLGGQQGAAA----------RADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtGGG~~~avl----------r~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                      .|+|+|||   +.+          ++++++.|+ .|.+|||+++.+..
T Consensus        71 ~v~a~~~g---~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~  115 (340)
T TIGR03575        71 FLVAVING---SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQG  115 (340)
T ss_pred             HHHHhcCc---ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHH
Confidence            58899998   465          555668887 79999999998754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.29  E-value=2.3e-11  Score=103.79  Aligned_cols=103  Identities=17%  Similarity=0.035  Sum_probs=73.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHHHh-cCCCEEEE
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRAVVA  261 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~L~-~~~~~VIA  261 (345)
                      |+|+|++||||||+|+.|++.++..++|.|+++....      |...   -..+++.++++....+...+. .+..+||.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~vVid   78 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPL---NDEDRWPWLQALTDALLAKLASAGEGVVVA   78 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCC---CccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            7899999999999999999999999999999886421      2221   223467778887766665554 44556766


Q ss_pred             cCCCCCcccCcHHHHHHHhc------CcEEEEEcChhhhchhhhhh
Q 019172          262 TLGGQQGAAARADKWQHLYA------GFTVWLSQTEAMGKLLRVFV  301 (345)
Q Consensus       262 tGGG~~~avlr~~~r~~L~~------G~VV~Ld~s~a~~~~~Rv~v  301 (345)
                      +++      ....+|+.++.      -.+|||+++.++. ..|...
T Consensus        79 ~~~------~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~-~~R~~~  117 (150)
T cd02021          79 CSA------LKRIYRDILRGGAANPRVRFVHLDGPREVL-AERLAA  117 (150)
T ss_pred             ecc------ccHHHHHHHHhcCCCCCEEEEEEECCHHHH-HHHHHh
Confidence            554      45667777762      2599999998865 555433

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK14532 adenylate kinase; Provisional

Probab=99.28  E-value=2.4e-11  Score=107.70  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=71.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC---CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH---VR  257 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~---~~  257 (345)
                      |+|+|+|+|||||||+|+.||+.+|+++|++|+++.+.      .|..+.+++. .|+..+.+.-..++.+....   .+
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPEAEAAG   79 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccC
Confidence            47999999999999999999999999999999999875      3445667766 58777777666666553322   12


Q ss_pred             EEEEcCCCCCcccCcHHHHH----HHh-cC----cEEEEEcChhhh
Q 019172          258 AVVATLGGQQGAAARADKWQ----HLY-AG----FTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~----~L~-~G----~VV~Ld~s~a~~  294 (345)
                      .+|-.|-     +-+.+.++    .+. .|    .+|||++|.++.
T Consensus        80 g~vldg~-----pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~  120 (188)
T PRK14532         80 GAIFDGF-----PRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL  120 (188)
T ss_pred             cEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            2232221     33333333    333 33    699999998865

>PRK04182 cytidylate kinase; Provisional

Probab=99.23  E-value=3.4e-11  Score=104.41  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH---HHcCchhhhhhccChHHH---HHHHHHHHHHHh-cCCCEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET---FAKQTIDSWMLAEGSDSV---VNGECDVLESLS-SHVRAV  259 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~---~~g~sI~ei~~~~Gee~F---RelE~~vL~~L~-~~~~~V  259 (345)
                      |.|+|+|++||||||+|+.||+.||++++|+|+++.+   ..|+++.++.+ .++..+   +.++..+ ..+. ...++|
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~V   78 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDRRQ-LEIAEKEDNVV   78 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHHHH-HHHHhcCCCEE
Confidence            4699999999999999999999999999999887655   34677776653 344333   3344333 3444 445566


Q ss_pred             EEcC-CCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          260 VATL-GGQQGAAARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtG-GG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                      |... ++   ....+      ..+.+|||++|.+..
T Consensus        79 i~g~~~~---~~~~~------~~~~~V~l~a~~e~~  105 (180)
T PRK04182         79 LEGRLAG---WMAKD------YADLKIWLKAPLEVR  105 (180)
T ss_pred             EEEeecc---eEecC------CCCEEEEEECCHHHH
Confidence            6421 22   12211      157899999998754

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.19  E-value=8.9e-11  Score=103.23  Aligned_cols=101  Identities=24%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHH----HHHH-Hhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD----VLES-LSS  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~----vL~~-L~~  254 (345)
                      ++..|+|+|++||||||+|+.|++.|+     ..++|.|.+.+.         +...|.+.+.+.|..    .+.+ +..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~   76 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI---------LGHYGYDKQSRIEMALKRAKLAKFLAD   76 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh---------cCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999996     789998886442         222333334333322    2222 434


Q ss_pred             CCCEEEEcCCCCCccc--CcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          255 HVRAVVATLGGQQGAA--ARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       255 ~~~~VIAtGGG~~~av--lr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                      .+..||++|++.   .  ++..++..+....+|||++++++. ..|
T Consensus        77 ~g~~VI~~~~~~---~~~~~~~~~~~~~~~~~v~l~~~~e~~-~~R  118 (176)
T PRK05541         77 QGMIVIVTTISM---FDEIYAYNRKHLPNYFEVYLKCDMEEL-IRR  118 (176)
T ss_pred             CCCEEEEEeCCc---HHHHHHHHHhhcCCeEEEEEeCCHHHH-HHh
Confidence            456788887762   3  444555555556799999998865 444

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.15  E-value=7.3e-11  Score=123.44  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCC------ceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHH------
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVL------  249 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~------~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL------  249 (345)
                      +..++..|+|+|+|||||||||+.||++|+.      .++|+|.+...+.           |+..|++.|++..      
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~-----------ge~~f~~~er~~~~~~l~~  456 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS-----------SELGFSKEDRDLNILRIGF  456 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-----------CCCCCCHHHHHHHHHHHHH
Confidence            3456779999999999999999999999997      9999998743332           3344555554322      


Q ss_pred             --HHHhcCCCEEEEc-CCCCCcccCcHHHHHHHh-cC--cEEEEEcChhhhchhh
Q 019172          250 --ESLSSHVRAVVAT-LGGQQGAAARADKWQHLY-AG--FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       250 --~~L~~~~~~VIAt-GGG~~~avlr~~~r~~L~-~G--~VV~Ld~s~a~~~~~R  298 (345)
                        ..+.+.+..||.. -...  ...++++|+.++ .|  .+|||+++.++. ..|
T Consensus       457 ~a~~v~~~Gg~vI~~~~~p~--~~~R~~nr~llk~~g~fivV~L~~p~e~l-~~R  508 (568)
T PRK05537        457 VASEITKNGGIAICAPIAPY--RATRREVREMIEAYGGFIEVHVATPLEVC-EQR  508 (568)
T ss_pred             HHHHHHhCCCEEEEEeCCch--HHHHHHHHHHHhhcCCEEEEEEcCCHHHH-HHh
Confidence              1222223333322 1110  124578888887 35  589999998865 444

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.14  E-value=2.2e-10  Score=108.32  Aligned_cols=108  Identities=11%  Similarity=0.018  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHHHHcCch-hh-hhhccChHHHHHHHHHHHHHHhc-CCCEEEEc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-DS-WMLAEGSDSVVNGECDVLESLSS-HVRAVVAT  262 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~~~g~sI-~e-i~~~~Gee~FRelE~~vL~~L~~-~~~~VIAt  262 (345)
                      +.|+|+|+|||||||+|+.|++.+ ++.++|.|++.+...+... .. .+..++++.+++.....++++.. +..+||++
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~   82 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD   82 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence            468889999999999999999999 9999999998776654221 11 12223445555566566555543 34456654


Q ss_pred             CCCCCcccCcHHHHHHH----h-cCc---EEEEEcChhhhchhhhhh
Q 019172          263 LGGQQGAAARADKWQHL----Y-AGF---TVWLSQTEAMGKLLRVFV  301 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L----~-~G~---VV~Ld~s~a~~~~~Rv~v  301 (345)
                      ..      .+++.++.+    + .+.   +|||+++.+.. ..|...
T Consensus        83 ~~------~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~-~~R~~~  122 (300)
T PHA02530         83 TN------LNPERRRKWKELAKELGAEFEEKVFDVPVEEL-VKRNRK  122 (300)
T ss_pred             CC------CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-HHHHHc
Confidence            44      334444332    2 232   78999987755 555433

>PRK08118 topology modulation protein; Reviewed

Probab=99.13  E-value=2e-10  Score=102.03  Aligned_cols=95  Identities=17%  Similarity=0.141  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHH-HHHHHHHHHhcCCCEEEEcCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN-GECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRe-lE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      ++|+|+|++||||||+|+.|++.+|+++++.|+++++.            ||....+ ...++++++..+.++||. |..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~------------~w~~~~~~~~~~~~~~~~~~~~wVid-G~~   68 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP------------NWEGVPKEEQITVQNELVKEDEWIID-GNY   68 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc------------CCcCCCHHHHHHHHHHHhcCCCEEEe-CCc
Confidence            57999999999999999999999999999999998641            2211111 223345555655667764 321


Q ss_pred             CCcccCcHHHHHHH-hcCcEEEEEcChhhhchhhhhh
Q 019172          266 QQGAAARADKWQHL-YAGFTVWLSQTEAMGKLLRVFV  301 (345)
Q Consensus       266 ~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~~~~Rv~v  301 (345)
                          .-.-  ...+ ..+.+|||++|..+. ..|+..
T Consensus        69 ----~~~~--~~~l~~~d~vi~Ld~p~~~~-~~R~~~   98 (167)
T PRK08118         69 ----GGTM--DIRLNAADTIIFLDIPRTIC-LYRAFK   98 (167)
T ss_pred             ----chHH--HHHHHhCCEEEEEeCCHHHH-HHHHHH
Confidence                0001  1123 378999999998755 344333

>PRK06547 hypothetical protein; Provisional

Probab=99.11  E-value=5.5e-11  Score=106.61  Aligned_cols=118  Identities=18%  Similarity=0.170  Sum_probs=76.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc-----hhhhhhccChHHHHHH--HHHHHHH--HhcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVNG--ECDVLES--LSSH  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s-----I~ei~~~~Gee~FRel--E~~vL~~--L~~~  255 (345)
                      ..+.|.|.|++||||||+|+.||+.++++++++|+++....+.+     +.+.+.+.|+..++..  .......  ....
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~   93 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP   93 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence            34567778999999999999999999999999999886433322     2233333454433220  0000001  1122


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHh-cC--cEEEEEcChhhhchhhhhhhccccc
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLY-AG--FTVWLSQTEAMGKLLRVFVLSLHLR  307 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~-~G--~VV~Ld~s~a~~~~~Rv~v~~~h~R  307 (345)
                      .+.||..|+|    .+.+++++.+. .|  ..|||++|.++. ..|...++.|.+
T Consensus        94 ~~vVIvEG~~----al~~~~r~~~d~~g~v~~I~ld~~~~vr-~~R~~~Rd~~~~  143 (172)
T PRK06547         94 GRRLIIEGVG----SLTAANVALASLLGEVLTVWLDGPEALR-KERALARDPDYA  143 (172)
T ss_pred             CCeEEEEehh----hccHHHHHHhccCCCEEEEEEECCHHHH-HHHHHhcCchhh
Confidence            4578888887    46788888885 45  689999999866 555555444433

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.09  E-value=5.7e-10  Score=100.75  Aligned_cols=97  Identities=23%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhh--hhccChHHHHHHHHHHHHHHhcCCCEEE-
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW--MLAEGSDSVVNGECDVLESLSSHVRAVV-  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei--~~~~Gee~FRelE~~vL~~L~~~~~~VI-  260 (345)
                      +.|.|.|+|||||||+++.||+.||++++.+..++.+++   ||++.++  ++++..+.-.+..+...+ +..+.++|| 
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e-~a~~~nvVle   79 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKE-LAKEGNVVLE   79 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHH-HHHcCCeEEh
Confidence            468999999999999999999999999999999987765   8998887  344455555555554443 334677777 


Q ss_pred             EcCCCCCcccCcHHHHHHH-hcCcEEEEEcChhhh
Q 019172          261 ATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAMG  294 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~  294 (345)
                      +-.+|          |-.- .+...|||.+|..+-
T Consensus        80 grLA~----------Wi~k~~adlkI~L~Apl~vR  104 (179)
T COG1102          80 GRLAG----------WIVREYADLKIWLKAPLEVR  104 (179)
T ss_pred             hhhHH----------HHhccccceEEEEeCcHHHH
Confidence            23333          2221 268899999998743

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.06  E-value=1.9e-09  Score=101.07  Aligned_cols=124  Identities=10%  Similarity=0.056  Sum_probs=80.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC------chhhhhhccCh----HHHHHHHHHHHHHH-
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLESL-  252 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~------sI~ei~~~~Ge----e~FRelE~~vL~~L-  252 (345)
                      ..+++|+|+|+|||||||+|+.||+.+|+++|++|+++++..+.      .+.+++.. |.    +.+.++-.+.+.++ 
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~   82 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVT   82 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhc
Confidence            35678999999999999999999999999999999999875432      24444433 32    44444444444443 


Q ss_pred             hcCCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172          253 SSHVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV  314 (345)
Q Consensus       253 ~~~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~  314 (345)
                      ......+|-.|-     +-+......|.    -..+|+|+.+.++. ..|..-++.+......|+.
T Consensus        83 ~~~~~g~iLDGf-----PRt~~Qa~~l~~~~~~~~vi~l~~~~~~~-~~Rl~~Rr~~~~~g~~y~~  142 (229)
T PTZ00088         83 DDCFKGFILDGF-----PRNLKQCKELGKITNIDLFVNIYLPRNIL-IKKLLGRRICNTCNRNFNI  142 (229)
T ss_pred             cccCceEEEecC-----CCCHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHcCcCCCccCCccee
Confidence            222334444443     44444445443    25689999998865 5665555555555555554

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.05  E-value=2.8e-09  Score=97.15  Aligned_cols=125  Identities=13%  Similarity=0.058  Sum_probs=78.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hhc---CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSS---HV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~---~~  256 (345)
                      +.|+|+|+|||||||+|+.||+.+|++++++++++.+..      |..+.+++. .|.....+....++.+ +..   ..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence            469999999999999999999999999999999987653      223444443 3443334444444433 332   23


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhccccccccccceeeeee
Q 019172          257 RAVVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFV  319 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i  319 (345)
                      ++||. |-     +-+.+..+.|    . .    ..+|||+++.++. ..|..-+..+......|+.....+
T Consensus        80 g~VlD-Gf-----Pr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~-~~Rl~~R~~~~~~g~~~~~~~~~p  144 (215)
T PRK00279         80 GFLLD-GF-----PRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL-VERLSGRRICPACGRTYHVKFNPP  144 (215)
T ss_pred             CEEEe-cC-----CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-HHHHhCCcccCccCCcccccCCCC
Confidence            45554 32     4555444444    2 1    3699999998865 555444444444445555544444

>PLN02674 adenylate kinase

Probab=99.04  E-value=3.4e-09  Score=100.55  Aligned_cols=128  Identities=11%  Similarity=0.025  Sum_probs=88.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcCC--
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV--  256 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~--  256 (345)
                      ..++|+|+|+|||||+|+|+.||+.+|+++|++++++.+.      .|..+.+++. .|+....++...++.+.....  
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcCc
Confidence            3578999999999999999999999999999999999876      4556777775 799999999888877754331  


Q ss_pred             -CEEEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhccccccccccceeeeee
Q 019172          257 -RAVVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFV  319 (345)
Q Consensus       257 -~~VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i  319 (345)
                       +.+|-.|-     +-+...-+.|    . .    ..||+|+++.++. ..|..-++.+......|+.....+
T Consensus       109 ~~g~ilDGf-----PRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l-~~Rl~gR~~~~~~g~~yn~~~~pp  175 (244)
T PLN02674        109 QKGFILDGF-----PRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAIL-EERITGRWIHPSSGRTYHTKFAPP  175 (244)
T ss_pred             CCcEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHhccccccccCCccccccCCC
Confidence             22332332     4443333322    2 1    4699999999876 455444444444455555544443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.03  E-value=2.4e-09  Score=95.91  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      .+..|+|+|++||||||+++.|+..++..++|+|++....      .|....+   .....+...+...+...+....+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g   78 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD---EDRLPWLERLNDASYSLYKKNETG   78 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc---ccchHHHHHHHHHHHHHHhcCCCE
Confidence            4678999999999999999999999999999999964321      1222221   122233344433332222222345


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh-cC---cEEEEEcChhhhchhhhhhhcccc
Q 019172          259 VVATLGGQQGAAARADKWQHLY-AG---FTVWLSQTEAMGKLLRVFVLSLHL  306 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv~v~~~h~  306 (345)
                      +|+|+.      +++.+|+.++ .+   .+|||+++.++. ..|+..+..|.
T Consensus        79 ~iv~s~------~~~~~R~~~r~~~~~~~~v~l~a~~~~l-~~Rl~~R~~~~  123 (176)
T PRK09825         79 FIVCSS------LKKQYRDILRKSSPNVHFLWLDGDYETI-LARMQRRAGHF  123 (176)
T ss_pred             EEEEEe------cCHHHHHHHHhhCCCEEEEEEeCCHHHH-HHHHhcccCCC
Confidence            565553      7888888887 33   589999999876 55654444343

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.03  E-value=1.6e-09  Score=95.07  Aligned_cols=100  Identities=15%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHHHHhcC--CCEEE
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSSH--VRAVV  260 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~~L~~~--~~~VI  260 (345)
                      |+|+|+|||||||+|+.||+.+|+.++++|+++.+...      ..+.+++ ..|...-.++...++++....  .+.+|
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            78999999999999999999999999999998876542      1234443 356666666656666554332  23344


Q ss_pred             EcCCCCCcccCcHHHHHHH----h----cCcEEEEEcChhhh
Q 019172          261 ATLGGQQGAAARADKWQHL----Y----AGFTVWLSQTEAMG  294 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L----~----~G~VV~Ld~s~a~~  294 (345)
                      -.|-     +-+.+.++.+    .    -..+|||++|.++.
T Consensus        81 lDg~-----p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~  117 (183)
T TIGR01359        81 IDGF-----PRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVM  117 (183)
T ss_pred             EeCC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence            3442     3444444322    1    14699999999864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.01  E-value=2.5e-09  Score=94.16  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHHH-Hhc---CCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSS---HVR  257 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~~-L~~---~~~  257 (345)
                      +|+|+|++||||||+|+.||+.+|++++++|+++.+...      ..+.+.+.. |...-.++...++.. +..   ..+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~   79 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG   79 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence            489999999999999999999999999999999877542      223333332 322223333333333 322   234


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh--------cCcEEEEEcChhhhchhhh
Q 019172          258 AVVATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~--------~G~VV~Ld~s~a~~~~~Rv  299 (345)
                      +||. |-     +-+....+.+.        -..+|||+++.++. ..|.
T Consensus        80 ~vld-g~-----Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~-~~Rl  122 (194)
T cd01428          80 FILD-GF-----PRTVDQAEALDELLDEGIKPDKVIELDVPDEVL-IERI  122 (194)
T ss_pred             EEEe-CC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHH
Confidence            5554 32     33444444442        14699999999865 4553

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13975 thymidylate kinase; Provisional

Probab=99.01  E-value=2e-10  Score=101.92  Aligned_cols=106  Identities=20%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcHHHHHH----H------cCchhhhhhccChHHHHHHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----A------KQTIDSWMLAEGSDSVVNGECDVLESLS  253 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~lIE~~----~------g~sI~ei~~~~Gee~FRelE~~vL~~L~  253 (345)
                      ++-|+|.|++||||||+++.||+.|+  +.+.+.|..+.+.    .      +.++..+|..++++.|+++|..+.+   
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~---   78 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK---   78 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence            36799999999999999999999999  6667777655432    1      2234557777888888776654322   


Q ss_pred             cCCCEEEE-----------cCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          254 SHVRAVVA-----------TLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       254 ~~~~~VIA-----------tGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                         +.||+           +++|.-.-.+...++..++.+.+|||+++++.. ..|
T Consensus        79 ---~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~-~~R  130 (196)
T PRK13975         79 ---RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEA-LKR  130 (196)
T ss_pred             ---CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHH-HHH
Confidence               33444           244420000111222223457899999999865 444

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.01  E-value=1.3e-09  Score=96.25  Aligned_cols=105  Identities=12%  Similarity=-0.027  Sum_probs=67.8

Q ss_pred             EcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH--HcCchhhhhh-ccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 019172          192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRAVVATLGGQQG  268 (345)
Q Consensus       192 IG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~--~g~sI~ei~~-~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~  268 (345)
                      +|++||||||+++.||..+|..++|+|.+....  .++....-+. ...+.+...++..+...+......||.++.    
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~----   76 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSA----   76 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEec----
Confidence            699999999999999999999999999864221  1111111111 222455555555554444444445565543    


Q ss_pred             ccCcHHHHHHHh-cC---cEEEEEcChhhhchhhhhhhc
Q 019172          269 AAARADKWQHLY-AG---FTVWLSQTEAMGKLLRVFVLS  303 (345)
Q Consensus       269 avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv~v~~  303 (345)
                        ++..+|+.++ .+   .+|||+++.++. ..|+..+.
T Consensus        77 --~~~~~r~~~~~~~~~~~~v~l~a~~~~l-~~Rl~~R~  112 (163)
T PRK11545         77 --LKKHYRDLLREGNPNLSFIYLKGDFDVI-ESRLKARK  112 (163)
T ss_pred             --chHHHHHHHHccCCCEEEEEEECCHHHH-HHHHHhcc
Confidence              6777888887 33   489999999876 55644443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.01  E-value=9e-10  Score=92.31  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh-hccChHHHHHHHHHHHHH-HhcCCCEEEEcCCCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLES-LSSHVRAVVATLGGQ  266 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~-~~~Gee~FRelE~~vL~~-L~~~~~~VIAtGGG~  266 (345)
                      |+++|++||||||+++.|++.+++.+|+.|++..+..+...+... ..+-.+.+.+.-.+.++. +..+..+||..+.  
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~--   79 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN--   79 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS---
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc--
Confidence            789999999999999999999999999999998877763322211 011112222233334444 3444456665333  


Q ss_pred             CcccCcHHHHHHH----h-cC---cEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHL----Y-AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~~~~R  298 (345)
                          .....|+.+    + .|   .+|||+++.++. ..|
T Consensus        80 ----~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~-~~R  114 (143)
T PF13671_consen   80 ----LSREERARLRELARKHGYPVRVVYLDAPEETL-RER  114 (143)
T ss_dssp             -----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH-HHH
T ss_pred             ----CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH-HHH
Confidence                333444433    3 35   588999888765 444

...

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=98.97  E-value=1.4e-09  Score=89.30  Aligned_cols=89  Identities=17%  Similarity=0.355  Sum_probs=74.9

Q ss_pred             CCCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc-
Q 019172           74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-  152 (345)
Q Consensus        74 ~~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~-  152 (345)
                      +|..++.|.|+|+..||++++++|.  ...++|+.|++..++|.+.+.+.    .+|+ ++||.+|.|.|+.|.++|.. 
T Consensus         1 ~~~~~~~y~W~QT~~eV~v~i~lp~--~~~~kdv~V~i~~~~l~V~~~g~----~~l~-G~L~~~I~~destWtled~k~   73 (93)
T cd06494           1 VPCKTPWGCWYQTMDEVFIEVNVPP--GTRAKDVKCKLGSRDISLAVKGQ----EVLK-GKLFDSVVADECTWTLEDRKL   73 (93)
T ss_pred             CCccCCCcEEEeEcCEEEEEEECCC--CCceeeEEEEEEcCEEEEEECCE----EEEc-CcccCccCcccCEEEEECCcE
Confidence            3678999999999999999999997  45799999999999999998653    2566 99999999999999999987 


Q ss_pred             eeehccccCC--CCCcchh
Q 019172          153 LVINLKKQDP--ELKWPDI  169 (345)
Q Consensus       153 ~~~~~k~~~~--~~~~~~~  169 (345)
                      +.|.+.|...  +..|+.+
T Consensus        74 l~I~L~K~~~~~~~~W~sl   92 (93)
T cd06494          74 IRIVLTKSNRDAGNCWKSL   92 (93)
T ss_pred             EEEEEEeCCCCCCcccccc
Confidence            6899988643  2356543

Little is known about the function of the proteins in this subgroup.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.96  E-value=1.1e-08  Score=92.45  Aligned_cols=110  Identities=17%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      -++..|+|+|++||||||+++.|+..|     +..++|.|.+.....+. +. +...+..+.++.+.. +...+...+..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~-~~-~~~~~~~~~~~~l~~-~a~~~~~~G~~   98 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD-LG-FSDADRKENIRRVGE-VAKLMVDAGLV   98 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc-CC-cCcccHHHHHHHHHH-HHHHHhhCCCE
Confidence            367889999999999999999999987     46889999987554431 11 112222344444322 23334444556


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh-cCc-EEEEEcChhhhchhh
Q 019172          259 VVATLGGQQGAAARADKWQHLY-AGF-TVWLSQTEAMGKLLR  298 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~-~G~-VV~Ld~s~a~~~~~R  298 (345)
                      ||+...+. ....+...+++++ .|+ +|||++|.++. ..|
T Consensus        99 VI~~~~~~-~~~~R~~~r~~l~~~~~i~V~L~~~~e~~-~~R  138 (198)
T PRK03846         99 VLTAFISP-HRAERQMVRERLGEGEFIEVFVDTPLAIC-EAR  138 (198)
T ss_pred             EEEEeCCC-CHHHHHHHHHHcccCCEEEEEEcCCHHHH-Hhc
Confidence            66544320 0012333444444 366 79999999865 444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.95  E-value=6.4e-10  Score=91.06  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhc--CCCEEEEcCCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS--HVRAVVATLGG  265 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~--~~~~VIAtGGG  265 (345)
                      .|+|+|++||||||+|+.||+.+|++++++|+++.+..-.....-.. +-.....+.-.+.++.+..  ....+|-.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~   79 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDER-EYIDADIDLLDDILEQLQNKPDNDNWIIDGSY   79 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCC-HHHHHHHHHHHHHHHHHHETTT--EEEEECCS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchh-hHHHHHHHHHHHHHHhhhccCCCCeEEEeCCC
Confidence            48999999999999999999999999999999542111101100000 0022334444555666632  22334445542


Q ss_pred             CCcccCcHHHHHHHh-cCcEEEEEcChhh
Q 019172          266 QQGAAARADKWQHLY-AGFTVWLSQTEAM  293 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~  293 (345)
                           . ...-..+. ...+|||+.+.+.
T Consensus        80 -----~-~~~~~~~~~~~~~i~l~~~~~~  102 (121)
T PF13207_consen   80 -----E-SEMEIRLPEFDHVIYLDAPDEE  102 (121)
T ss_dssp             -----C-HCCHSCCHHGGCEEEEEEEEHH
T ss_pred             -----c-cchhhhhhcCCEEEEEECCCHH
Confidence                 1 11111222 3579999998873

...

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.95  E-value=4.7e-09  Score=92.22  Aligned_cols=102  Identities=13%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      .+..|+|+|++|+||||+|+.||..|.     +.++|+|.+.+.... .+. +..++...+++.+.. +.+.+.. .+.+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~-~~~-~~~~~r~~~~~~~~~-~a~~~~~-~g~~   78 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK-GLG-FSKEDRDTNIRRIGF-VANLLTR-HGVI   78 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc-CCC-CChhhHHHHHHHHHH-HHHHHHh-CCCE
Confidence            467899999999999999999999983     788999987654431 111 112233444555432 2222333 3334


Q ss_pred             EEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhh
Q 019172          260 VATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~  294 (345)
                      |.+++.    ......|+.++    ...+|||+++.+..
T Consensus        79 vi~~~~----~~~~~~~~~l~~~~~~~~~v~l~~~~e~~  113 (175)
T PRK00889         79 VLVSAI----SPYRETREEVRANIGNFLEVFVDAPLEVC  113 (175)
T ss_pred             EEEecC----CCCHHHHHHHHhhcCCeEEEEEcCCHHHH
Confidence            444443    23456666665    25699999998864

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.95  E-value=8e-10  Score=117.18  Aligned_cols=109  Identities=16%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             cceeeeeeecCcccc-cccceeEecCC-ce--EEEEeeccCC--ccceeeeccccccccCCCceeeecccceeehccccC
Q 019172           88 AEIELRLQLGSLEIQ-SSKDIFVDADG-TC--LTVRVNRSGS--FITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (345)
Q Consensus        88 ~Ele~rl~l~~~~~~-~sr~i~I~~~d-~~--L~~~vls~~~--~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~  161 (345)
                      .|.+++|.|.|.... ..+...|++|+ ||  |++.+.+-..  ....|+...|+.|.+|.    ||++...-       
T Consensus       366 ~~~~d~l~I~g~~~~~~~~g~~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~----F~~~l~~L-------  434 (661)
T PRK11860        366 EEGADYIRVTPPAQAADWKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPD----YFEALFSV-------  434 (661)
T ss_pred             EEeCCeEEEECCCcccCCCCccccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCC----hHHHHHHh-------
Confidence            345677888773221 23455688888 88  8888887762  44568889999999997    66654411       


Q ss_pred             CCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          162 PELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       162 ~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                                     .. . +.-..+.|.|.|++||||||+|+.||++||++|+|+|+++...
T Consensus       435 ---------------g~-~-~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        435 ---------------AQ-A-DADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             ---------------cC-C-cccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence                           11 0 0001357999999999999999999999999999999997765

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=98.95  E-value=2.8e-09  Score=88.99  Aligned_cols=91  Identities=21%  Similarity=0.463  Sum_probs=73.8

Q ss_pred             CCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-ccee
Q 019172           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLV  154 (345)
Q Consensus        76 ~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~  154 (345)
                      +.+++|.|+|+..|+++++++|.. +.++|++.|++.-++++++++..+...++|+ +.||.+|.+.|++|.++| ..+.
T Consensus         2 ~~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~-G~L~~~V~~des~Wtled~~~l~   79 (102)
T cd06495           2 AVRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVLME-GEFTHKINTENSLWSLEPGKCVL   79 (102)
T ss_pred             CcCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceEEe-CcccCcccCccceEEEeCCCEEE
Confidence            357899999999999999999984 3468899999999999999985333335677 999999999999999998 4578


Q ss_pred             ehccccCCCCCcchh
Q 019172          155 INLKKQDPELKWPDI  169 (345)
Q Consensus       155 ~~~k~~~~~~~~~~~  169 (345)
                      +.+.|.. +.-||.+
T Consensus        80 I~L~K~~-~~wW~~v   93 (102)
T cd06495          80 LSLSKCS-EVWWNAV   93 (102)
T ss_pred             EEEEECC-Ccccchh
Confidence            8998864 2235554

Little is known about the function of the proteins in this subgroup.

>PRK13808 adenylate kinase; Provisional

Probab=98.94  E-value=6.9e-09  Score=102.53  Aligned_cols=102  Identities=19%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHH---HHHHHHHHHHHHhcCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDS---VVNGECDVLESLSSHVR  257 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~---FRelE~~vL~~L~~~~~  257 (345)
                      |+|+|+|+|||||||+++.||+.+|+++|++|+++.+..      |..+.+++..-++..   +..+-.+-|.+.....+
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            579999999999999999999999999999999997642      333445554322221   12222222222222234


Q ss_pred             EEEEcCCCCCcccCcHHHHHH----Hh-----cCcEEEEEcChhhh
Q 019172          258 AVVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~----L~-----~G~VV~Ld~s~a~~  294 (345)
                      +||. |  +   +-+.+..+.    |.     -..+|||++|+++.
T Consensus        81 ~ILD-G--F---PRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evl  120 (333)
T PRK13808         81 FILD-G--F---PRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL  120 (333)
T ss_pred             EEEe-C--C---CCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHH
Confidence            5554 2  2   444333322    22     25799999998754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.94  E-value=7.8e-09  Score=90.42  Aligned_cols=102  Identities=15%  Similarity=0.190  Sum_probs=62.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-c-----CchhhhhhccC-----hHHHHHHHHHHHHHHhc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-K-----QTIDSWMLAEG-----SDSVVNGECDVLESLSS  254 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g-----~sI~ei~~~~G-----ee~FRelE~~vL~~L~~  254 (345)
                      ...|+|+|++||||||+++.||+.+|+.++++|+++.+.. +     ..+..++.. |     ...+..++..+...+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcccCc
Confidence            3568899999999999999999999999999999876642 1     223333322 2     12223333333333333


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~  294 (345)
                       ...||..|-     +.+......+.     ...+|||+++.++.
T Consensus        82 -~~~~i~dg~-----~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~  120 (188)
T TIGR01360        82 -SKGFLIDGY-----PREVKQGEEFERRIGPPTLVLYFDCSEDTM  120 (188)
T ss_pred             -CCeEEEeCC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHH
Confidence             334444442     23332233332     25799999998764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01351 adk adenylate kinases

Probab=98.93  E-value=1.5e-08  Score=92.14  Aligned_cols=121  Identities=15%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccCh----HHHHHHHHHHHHHHhcCCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGS----DSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Ge----e~FRelE~~vL~~L~~~~~  257 (345)
                      +|+|+|+|||||||+|+.||+.+|+++|++++++.+...      ..+.+++. .|.    +.+.++-.+.+.+......
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence            489999999999999999999999999999999876532      22333332 232    2222222222222111123


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChhhhchhhhhhhcccccccccccee
Q 019172          258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVR  315 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~  315 (345)
                      .+|-.|-     +-+....+.|.      -..+|||++|.++. ..|..-+..+......|+..
T Consensus        80 ~~ilDGf-----Prt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~-~~Rl~~R~~~~~~g~~y~~~  137 (210)
T TIGR01351        80 GFILDGF-----PRTLSQAEALDALLKEKIDAVIELDVPDEEL-VERLSGRRICPSCGRVYHLK  137 (210)
T ss_pred             cEEEeCC-----CCCHHHHHHHHHHhccCCCEEEEEECCHHHH-HHHHHCCCccCCcCCccccc
Confidence            3444443     34444444442      25799999999876 55644444444444444443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14531 adenylate kinase; Provisional

Probab=98.93  E-value=8.2e-09  Score=92.07  Aligned_cols=38  Identities=24%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ++|+|+|+|||||||+++.||+.+|+++|++++++.+.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~   40 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE   40 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence            57999999999999999999999999999999988764

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.92  E-value=5.1e-09  Score=90.28  Aligned_cols=99  Identities=16%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhh--ccChHHHHHHHHHHHHHHh-cCCCEEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWML--AEGSDSVVNGECDVLESLS-SHVRAVV  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~--~~Gee~FRelE~~vL~~L~-~~~~~VI  260 (345)
                      +.|+|.|++||||||+|+.||+.||++++|.|+++++..   |.++..+..  .+.....+.+.. .+.++. ...++||
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~Vi   79 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDR-RIHEIALKEKNVVL   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHH-HHHHHHhcCCCEEE
Confidence            468999999999999999999999999999998876654   444443221  111112222222 233333 4456666


Q ss_pred             EcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                      ...++.  ..+.      -..+.+|||++|.++.
T Consensus        80 ~g~~~~--~~~~------~~~d~~v~v~a~~~~r  105 (171)
T TIGR02173        80 ESRLAG--WIVR------EYADVKIWLKAPLEVR  105 (171)
T ss_pred             Eecccc--eeec------CCcCEEEEEECCHHHH
Confidence            322210  1110      0135799999998854

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.90  E-value=3.1e-09  Score=89.03  Aligned_cols=93  Identities=17%  Similarity=0.110  Sum_probs=60.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE-cCCCCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA-TLGGQQ  267 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA-tGGG~~  267 (345)
                      |+|+|++||||||+|+.||+.+|++++|.|.+.++..+.-.....   ....+++...+.+.++....++||. .+++. 
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~-   77 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVA---AIPEVRKALDERQRELAKKPGIVLEGRDIGT-   77 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEEeeeeee-
Confidence            789999999999999999999999999999654332221111111   1233555555556666665666763 33331 


Q ss_pred             cccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          268 GAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       268 ~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                        .       .+. ...+|||+++++..
T Consensus        78 --~-------~~~~~~~~i~l~~~~~~r   96 (147)
T cd02020          78 --V-------VFPDADLKIFLTASPEVR   96 (147)
T ss_pred             --E-------EcCCCCEEEEEECCHHHH
Confidence              1       122 57899999999854

>PRK01184 hypothetical protein; Provisional

Probab=98.88  E-value=1.7e-08  Score=89.18  Aligned_cols=101  Identities=10%  Similarity=0.026  Sum_probs=60.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-cCchhhhhhccChHHHHHHHH---HH-----HHHHhc-CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC---DV-----LESLSS-HV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g~sI~ei~~~~Gee~FRelE~---~v-----L~~L~~-~~  256 (345)
                      +.|+|+|+|||||||+++ +++.+|++++++|+++.+.. +..+..+.+..|+..++..+.   .+     ...+.. ..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD   80 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence            468899999999999998 78999999999988876654 223333333334433322221   11     122222 23


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172          257 RAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~  294 (345)
                      ..||..|-      -.....+.++     ...+|||+++.+..
T Consensus        81 ~~vvidg~------r~~~e~~~~~~~~~~~~~~i~v~~~~~~~  117 (184)
T PRK01184         81 EVVVIDGV------RGDAEVEYFRKEFPEDFILIAIHAPPEVR  117 (184)
T ss_pred             CcEEEeCC------CCHHHHHHHHHhCCcccEEEEEECCHHHH
Confidence            45555542      1222233332     34799999998864

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.85  E-value=1.4e-08  Score=94.53  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG  263 (345)
                      |+|+|+|||||||+|+.||+.|+     +.+++.|.+.+...     . ....+++.+++.+..+++++...+..||..+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-----~-~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~   75 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-----V-WKEKYEEFIRDSTLYLIKTALKNKYSVIVDD   75 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-----H-hhHHhHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence            78999999999999999999883     44666776655331     1 1234677788888888888776666788777


Q ss_pred             CCCCcccCc---HHHHHHHh-cC---cEEEEEcChhhh
Q 019172          264 GGQQGAAAR---ADKWQHLY-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       264 GG~~~avlr---~~~r~~L~-~G---~VV~Ld~s~a~~  294 (345)
                      +.    ...   .+.+...+ .|   .+|||++|.+..
T Consensus        76 ~~----~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~  109 (249)
T TIGR03574        76 TN----YYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL  109 (249)
T ss_pred             cc----hHHHHHHHHHHHHHhCCCCEEEEEecCCHHHH
Confidence            64    222   22233333 23   589999998755

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.84  E-value=6.2e-09  Score=91.44  Aligned_cols=105  Identities=13%  Similarity=0.008  Sum_probs=57.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCc----eeeC------------------cHHHHHHHcCchhhhhhccChHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYT----PLST------------------KELLETFAKQTIDSWMLAEGSDSVVNG  244 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~----fID~------------------D~lIE~~~g~sI~ei~~~~Gee~FRel  244 (345)
                      ..|+|+|++||||||+++.|+..++..    |+..                  +++........+..+.+..|.  +.. 
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-   78 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGL--SYG-   78 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCc--ccc-
Confidence            468999999999999999999988642    2211                  011111111111111111110  000 


Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhhh
Q 019172          245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       245 E~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv  299 (345)
                      ....+.........||++|++    ...+..++.+..+.+|||+++.++. ..|.
T Consensus        79 ~~~~i~~~~~~g~~vv~~g~~----~~~~~~~~~~~~~~~i~l~~~~~~~-~~Rl  128 (179)
T TIGR02322        79 IPAEIDQWLEAGDVVVVNGSR----AVLPEARQRYPNLLVVNITASPDVL-AQRL  128 (179)
T ss_pred             ChHHHHHHHhcCCEEEEECCH----HHHHHHHHHCCCcEEEEEECCHHHH-HHHH
Confidence            011122333345578888886    3445556655567899999988765 4443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PLN02165 adenylate isopentenyltransferase

Probab=98.84  E-value=9e-09  Score=101.77  Aligned_cols=83  Identities=8%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc---hhhhhhccCh---HHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSVV  242 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s---I~ei~~~~Ge---e~FR  242 (345)
                      ..++..|+|+|++||||||+|..||+.++..+|++|.+              .++..|..   ++.+...+|+   ..|+
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            34577899999999999999999999999999999998              56666765   5544444444   7888


Q ss_pred             HHHHHHHHHHhcCCCEEEEcCCC
Q 019172          243 NGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       243 elE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      +.+..+++++.+..+.+|.+||+
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGT  142 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGS  142 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECCh
Confidence            88888999988878888888885

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.83  E-value=4.6e-10  Score=119.04  Aligned_cols=102  Identities=12%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchh-hhhhccChHHHHHHHHHHHHHHhc-CCCEEEEc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLSS-HVRAVVAT  262 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~-ei~~~~Gee~FRelE~~vL~~L~~-~~~~VIAt  262 (345)
                      ....|+++|+||+||||||+.|++.|++.++|+|.++....++.+. +.+...|+..|++.|.+++..+.. ..+.|+++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~  293 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT  293 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999999999999999888887776 566777888999999888777664 24456666


Q ss_pred             CCCCCcccCcHHHHHHH---------h-cC-----cEEEEEc
Q 019172          263 LGGQQGAAARADKWQHL---------Y-AG-----FTVWLSQ  289 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L---------~-~G-----~VV~Ld~  289 (345)
                      |||   +++...|+..+         + .|     .||||+.
T Consensus       294 Ggv---aI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~  332 (664)
T PTZ00322        294 DGV---AVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV  332 (664)
T ss_pred             CCE---EEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE
Confidence            664   45555333322         2 23     5999998

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=98.82  E-value=7.6e-09  Score=83.58  Aligned_cols=84  Identities=24%  Similarity=0.486  Sum_probs=71.3

Q ss_pred             eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-cceeehccc
Q 019172           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (345)
Q Consensus        81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~~~~k~  159 (345)
                      |.|+|+..|++++++||......+|++.|+....++++++++..   .+|+ ++||.+|.+.|+.|.++| ..+.+.+.|
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~---~~i~-G~L~~~V~~des~Wtled~~~l~i~L~K   76 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP---PIID-GELYNEVKVEESSWLIEDGKVVTVNLEK   76 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc---eEEe-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence            89999999999999998754467899999988899999998752   3566 999999999999999988 468999999


Q ss_pred             cCCCCCcch
Q 019172          160 QDPELKWPD  168 (345)
Q Consensus       160 ~~~~~~~~~  168 (345)
                      ...+.=||.
T Consensus        77 ~~~~~wW~~   85 (87)
T cd06492          77 INKMEWWSR   85 (87)
T ss_pred             CCCCccccc
Confidence            766555554

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>PRK14527 adenylate kinase; Provisional

Probab=98.81  E-value=2.7e-08  Score=89.05  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      +++.|+++|++||||||+++.||+.+|+..++.|+++.+..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~   45 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV   45 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            56789999999999999999999999999999999987643

>PRK07261 topology modulation protein; Provisional

Probab=98.80  E-value=1.3e-08  Score=90.49  Aligned_cols=91  Identities=12%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      +.|+|+|++||||||+|+.|++.+|+++++.|.+....      .+... ..+.|.+.    +.++..+..+|| -|.. 
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~------~~~~~-~~~~~~~~----~~~~~~~~~wIi-dg~~-   67 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP------NWQER-DDDDMIAD----ISNFLLKHDWII-DGNY-   67 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc------ccccC-CHHHHHHH----HHHHHhCCCEEE-cCcc-
Confidence            47999999999999999999999999999999976421      12111 12222222    233334455555 3332 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                          ........+. ...+|||+.|...-
T Consensus        68 ----~~~~~~~~l~~ad~vI~Ld~p~~~~   92 (171)
T PRK07261         68 ----SWCLYEERMQEADQIIFLNFSRFNC   92 (171)
T ss_pred             ----hhhhHHHHHHHCCEEEEEcCCHHHH
Confidence                1111123333 78999999998754

>PRK06762 hypothetical protein; Provisional

Probab=98.80  E-value=2.7e-08  Score=86.36  Aligned_cols=101  Identities=18%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh--CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L--g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG  263 (345)
                      ++-|+|+|++||||||+|+.|++.+  ++.+++.|.+.....+..     ...+......++ ...+.....+..||..+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVK-----DGPGNLSIDLIE-QLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcccc-----CCCCCcCHHHHH-HHHHHHHhCCCEEEEch
Confidence            3568999999999999999999999  677899999776543211     111111122222 23333333455566554


Q ss_pred             CCCCcccCcHHHH---HHHh--cC---cEEEEEcChhhhchhh
Q 019172          264 GGQQGAAARADKW---QHLY--AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       264 GG~~~avlr~~~r---~~L~--~G---~VV~Ld~s~a~~~~~R  298 (345)
                      .     .....++   ..|.  .+   .+|||++|.++. ..|
T Consensus        76 ~-----~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~-~~R  112 (166)
T PRK06762         76 I-----LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEET-LRR  112 (166)
T ss_pred             h-----hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHH-HHH
Confidence            3     1222233   3332  23   689999998754 444

>PRK02496 adk adenylate kinase; Provisional

Probab=98.78  E-value=4.1e-08  Score=86.95  Aligned_cols=102  Identities=16%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cC----chhhhhhccChHHHHHHHHHHHHH-HhcC--CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQ----TIDSWMLAEGSDSVVNGECDVLES-LSSH--VR  257 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~----sI~ei~~~~Gee~FRelE~~vL~~-L~~~--~~  257 (345)
                      ++|+|+|+|||||||+++.||+.+|+++++.|+++.+..  +.    .+..++ ..|.....++...++.+ +.+.  .+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence            579999999999999999999999999999999987654  11    122232 23544444555555444 3221  23


Q ss_pred             EEEEcCCCCCcccCcHHHHHH----Hh-----cCcEEEEEcChhhh
Q 019172          258 AVVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~----L~-----~G~VV~Ld~s~a~~  294 (345)
                      .+|-.|-.     -+....+.    +.     ...+|||+.+.++.
T Consensus        81 g~vldGfP-----r~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~  121 (184)
T PRK02496         81 GWILDGFP-----RKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV  121 (184)
T ss_pred             CEEEeCCC-----CCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence            34445542     22222222    21     25789999998865

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=98.78  E-value=7.4e-10  Score=113.25  Aligned_cols=120  Identities=14%  Similarity=0.034  Sum_probs=93.4

Q ss_pred             eEEeecccceeeeeeecCccccccc---ceeEecCC-ce--EEEEeeccCC-ccceeeeccccccccCCCceeeecccce
Q 019172           81 YEFSDGSAEIELRLQLGSLEIQSSK---DIFVDADG-TC--LTVRVNRSGS-FITLIETNQLFDKIKPTETIWYIDEDQL  153 (345)
Q Consensus        81 y~~~~~~~Ele~rl~l~~~~~~~sr---~i~I~~~d-~~--L~~~vls~~~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~~  153 (345)
                      =-|-.+..|.++++.|.+.++.+=+   .+.+-.|| ||  |+|+||+.-. .++.|++..|..|+||+    |||-...
T Consensus       469 ~klg~~~~E~~dg~~v~~~~~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~----y~~Vl~~  544 (595)
T KOG0692|consen  469 RKLGATVEEGSDGYCVITPPEKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPD----YFQVLER  544 (595)
T ss_pred             HHhcccccccCceEEEeCCchHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccch----HHHHHHH
Confidence            3467789999999999999955533   22444676 88  9999776544 77889999999999998    8888777


Q ss_pred             eehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          154 VINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       154 ~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +.+-|..+.|     ..|+         ...+..++|++||.++||+|+|+..|+.|+|.++|.|
T Consensus       545 ~~~~kltgae-----ple~---------~a~knssm~vigmr~agkttigk~~akeL~~kimdld  595 (595)
T KOG0692|consen  545 ITKHKLTGAE-----PLES---------GAIKNSSMFVIGMREAGKTTIGKPAAKELYWKIMDLD  595 (595)
T ss_pred             HhhccccccC-----hhhc---------cccccceeeeehhhhcCceecCccchHHhCeeeeccC
Confidence            7666554432     1122         2234478999999999999999999999999999987

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.73  E-value=7.7e-08  Score=89.03  Aligned_cols=150  Identities=11%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC--chhhhhhccChHHH---------------------
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV---------------------  241 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~--sI~ei~~~~Gee~F---------------------  241 (345)
                      .+..|.|+|.+||||||++++|++.+|++++|+|.+..+.++.  .+.++++..|++.+                     
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~   84 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK   84 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence            3467999999999999999999999999999999998888653  24567777777664                     


Q ss_pred             HHHHH--------HHHHHHhcC-CCEEEEcCCCCCcccCcHHHHHHH-hcCcEEEEEcChhhhchhhhhhhc--------
Q 019172          242 VNGEC--------DVLESLSSH-VRAVVATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAMGKLLRVFVLS--------  303 (345)
Q Consensus       242 RelE~--------~vL~~L~~~-~~~VIAtGGG~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~~~~Rv~v~~--------  303 (345)
                      +.+|.        ++.+.+... ...||.-..     .+-+..+..- .-+.+|++.+|.++. ..|+..++        
T Consensus        85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~~~~D~vi~V~a~~e~r-i~Rl~~Rd~~s~~~a~  158 (204)
T PRK14733         85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDIP-----LLGPYNFRHYDYLKKVIVIKADLETR-IRRLMERDGKNRQQAV  158 (204)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEec-----hhhhccCchhhhCCEEEEEECCHHHH-HHHHHHcCCCCHHHHH
Confidence            22221        111222222 234443222     1222222111 246799999998855 44432222        


Q ss_pred             ---cccccccccceeeeeeccCCC-ChHHHhhhcchhhhhh
Q 019172          304 ---LHLRSVTSYFVRLEFVSSFSR-TNEHIMARKPAVMKTL  340 (345)
Q Consensus       304 ---~h~R~~~~~~~~le~i~~~~r-~~~~~~~~~~~~~~~~  340 (345)
                         ..+++....-+...+|.+=+. +.++++.+--.++.++
T Consensus       159 ~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        159 AFINLQISDKEREKIADFVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             HHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence               122344444555667766666 7777776655555443

>PRK14526 adenylate kinase; Provisional

Probab=98.71  E-value=2.6e-07  Score=85.52  Aligned_cols=120  Identities=12%  Similarity=0.071  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hh---cCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LS---SHV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~---~~~  256 (345)
                      |+|+|+|++||||||+++.||+.+|++++++++++.+..      |..+.+++. .|.-.--+.-..++.+ |.   ...
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~   79 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNND   79 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccC
Confidence            469999999999999999999999999999999987643      233555553 2332212222222222 22   223


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHh---c-CcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172          257 RAVVATLGGQQGAAARADKWQHLY---A-GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV  314 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~---~-G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~  314 (345)
                      ++||. |-     +-+.+..+.|.   . -.+|+|+++.++. ..|..-++.+......|+.
T Consensus        80 g~ilD-Gf-----PR~~~Qa~~l~~~~~~~~vi~l~~~~~~~-~~Rl~~R~~~~~~g~~y~~  134 (211)
T PRK14526         80 NFILD-GF-----PRNINQAKALDKFLPNIKIINFLIDEELL-IKRLSGRRICKSCNNIFNI  134 (211)
T ss_pred             cEEEE-CC-----CCCHHHHHHHHHhcCCCEEEEEECCHHHH-HHHHHCCCcccccCCcccc
Confidence            45663 32     44444444553   1 3577899988765 5554444444444444443

>PLN02200 adenylate kinase family protein

Probab=98.71  E-value=6.6e-08  Score=90.61  Aligned_cols=103  Identities=12%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHH-HHhcC-CC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSSH-VR  257 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~-~L~~~-~~  257 (345)
                      +..|+|+|+|||||||+|+.||+.+|+++|++++++.+...      ..+.+.+. .|...=.+.-..++. .+... .+
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~  121 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN  121 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999999999999876432      11222221 232211222222222 22211 23


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChhhh
Q 019172          258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a~~  294 (345)
                      .+|-.|-     +-+.+.+..+.      -..+|||++++++.
T Consensus       122 ~~ILDG~-----Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~  159 (234)
T PLN02200        122 KFLIDGF-----PRTEENRIAFERIIGAEPNVVLFFDCPEEEM  159 (234)
T ss_pred             eEEecCC-----cccHHHHHHHHHHhccCCCEEEEEECCHHHH
Confidence            3443342     45555555442      25799999998864

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.69  E-value=1.3e-07  Score=83.53  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET  223 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE~  223 (345)
                      ++.|+|+|++||||||+|+.|++.++.+++  +.|.++..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~   41 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA   41 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence            567999999999999999999999988766  88988764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.68  E-value=4.1e-08  Score=87.66  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      ++..|+|+|.+||||||||+.|.++|     ...++|+|.+..... ..+. +-.++.++..|.+ .++.+.|......|
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~-~dl~-fs~~dR~e~~rr~-~~~A~ll~~~G~iv   77 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN-ADLG-FSKEDREENIRRI-AEVAKLLADQGIIV   77 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT-TT---SSHHHHHHHHHHH-HHHHHHHHHTTSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC-CCCC-CCHHHHHHHHHHH-HHHHHHHHhCCCeE
Confidence            36789999999999999999999998     367899998764322 1121 1122233333332 23334455555555


Q ss_pred             EEcCCCCCcccCcHHHHHHHh----c--CcEEEEEcChhhh
Q 019172          260 VATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~----~--G~VV~Ld~s~a~~  294 (345)
                      |++.-     ...++.|+..+    .  -..|||++|.++-
T Consensus        78 Iva~i-----sp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~  113 (156)
T PF01583_consen   78 IVAFI-----SPYREDREWARELIPNERFIEVYVDCPLEVC  113 (156)
T ss_dssp             EEE---------SHHHHHHHHHHHHTTEEEEEEEES-HHHH
T ss_pred             EEeec-----cCchHHHHHHHHhCCcCceEEEEeCCCHHHH
Confidence            54433     24455566554    2  3689999998865

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK14528 adenylate kinase; Provisional

Probab=98.66  E-value=2.4e-07  Score=83.31  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      ++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~   40 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV   40 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence            579999999999999999999999999999999987643

>PRK08233 hypothetical protein; Provisional

Probab=98.63  E-value=1.2e-07  Score=82.43  Aligned_cols=105  Identities=12%  Similarity=0.068  Sum_probs=56.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-CceeeCcHHHHHHHcCchhhhhhc-cChH-HHHHHHHHHHHHHhcCC--CEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLA-EGSD-SVVNGECDVLESLSSHV--RAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-~~fID~D~lIE~~~g~sI~ei~~~-~Gee-~FRelE~~vL~~L~~~~--~~V  259 (345)
                      +++-|.|.|++||||||+|+.||+.|+ ...+..|.+........+.+|... ..++ ...+.-.+.++++.+..  ++|
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v   81 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI   81 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence            356788999999999999999999996 445555544322111122333221 1111 11111122344444333  456


Q ss_pred             EEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          260 VATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                      |..|.-   ....++.+..  ...+|||++|.++.
T Consensus        82 ivd~~~---~~~~~~~~~~--~d~~i~l~~~~~~~  111 (182)
T PRK08233         82 IVDYPF---AYLNSEMRQF--IDVTIFIDTPLDIA  111 (182)
T ss_pred             EEeeeh---hhccHHHHHH--cCEEEEEcCCHHHH
Confidence            654431   1223322221  47899999999865

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.63  E-value=6.2e-08  Score=87.65  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      ++|+|+|+|||||||+|+.||+.++++.+|+|++++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~   39 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI   39 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence            579999999999999999999999999999999887543

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.62  E-value=1.8e-07  Score=84.75  Aligned_cols=54  Identities=19%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc---CchhhhhhccChHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSV  241 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g---~sI~ei~~~~Gee~F  241 (345)
                      ..|.|+|.+||||||+++.|++ +|++++|+|++..+.+.   ....++++..|++.|
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~   59 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEIL   59 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhc
Confidence            3689999999999999999999 99999999999887652   223444444555433

>PLN02459 probable adenylate kinase

Probab=98.62  E-value=4.2e-07  Score=87.34  Aligned_cols=121  Identities=12%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHH-HHHhc----
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS----  254 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL-~~L~~----  254 (345)
                      +++|+|+|+|||||+|+|+.||+.+|+.+|++++++.+..      |..+.+++.+ |.-.=-++=..++ ++|.+    
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~-G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQ-GKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHc-CCccCHHHHHHHHHHHHhccccc
Confidence            4789999999999999999999999999999999987653      2223344332 3211111111222 22322    


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccc
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYF  313 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~  313 (345)
                      ..+.+|-.|-     +-+.+..+.|.    -..||+|+++.++. ..|..-++.+......|+
T Consensus       108 ~~~g~iLDGF-----PRt~~Qa~~Le~~~~id~Vi~L~v~d~~l-~~Rl~gR~~~~~~g~~Yn  164 (261)
T PLN02459        108 GESGFILDGF-----PRTVRQAEILEGVTDIDLVVNLKLREEVL-VEKCLGRRICSECGKNFN  164 (261)
T ss_pred             CCceEEEeCC-----CCCHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhhccccccccCcccc
Confidence            2234444443     55554444553    26799999999876 445444444444344444

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=98.59  E-value=7.1e-08  Score=87.52  Aligned_cols=81  Identities=17%  Similarity=0.396  Sum_probs=70.2

Q ss_pred             cCCCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc
Q 019172           73 SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ  152 (345)
Q Consensus        73 ~~~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~  152 (345)
                      -..+..++|+|+|++.||+..|++|... .+++++.|.+...++.++++++.   .|++ +.|+..|++.|+.|.++|..
T Consensus        13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~---~ild-G~L~~~vk~des~WtiEd~k   87 (179)
T KOG2265|consen   13 GNGADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQP---PILD-GELSHSVKVDESTWTIEDGK   87 (179)
T ss_pred             cCCccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCC---ceec-CccccccccccceEEecCCE
Confidence            3456678999999999999999999966 78999999999999999999987   3455 99999999999999999988


Q ss_pred             eeehcc
Q 019172          153 LVINLK  158 (345)
Q Consensus       153 ~~~~~k  158 (345)
                      +++.+.
T Consensus        88 ~i~i~l   93 (179)
T KOG2265|consen   88 MIVILL   93 (179)
T ss_pred             EEEEEe
Confidence            776553

>TIGR00152 dephospho-CoA kinase

Probab=98.59  E-value=3.5e-07  Score=81.65  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |.|+|.+||||||+++.|++..|++++|+|++..+.+
T Consensus         2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~   38 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV   38 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence            7899999999999999999998899999999987765

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK04040 adenylate kinase; Provisional

Probab=98.51  E-value=1.3e-06  Score=79.24  Aligned_cols=107  Identities=10%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh--CCceeeCcHHHHHHH---cC--chhhhhhcc--ChHHHHHHHHHHHHHHhcCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA---KQ--TIDSWMLAE--GSDSVVNGECDVLESLSSHV  256 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L--g~~fID~D~lIE~~~---g~--sI~ei~~~~--Gee~FRelE~~vL~~L~~~~  256 (345)
                      .+.|+|+|++|+||||+++.|++.|  ++.+++.|+++.+.+   |.  +-+++-...  -...++.+..+.++++....
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~   81 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG   81 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence            4679999999999999999999999  899999999875543   21  112111110  01112222223334443333


Q ss_pred             CEEEEcCC------CCCccc-CcHHHHHHHhcCcEEEEEcChhhh
Q 019172          257 RAVVATLG------GQQGAA-ARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       257 ~~VIAtGG------G~~~av-lr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                      .+||.+-.      |.  .+ +..+....+.-..+|||.+++...
T Consensus        82 ~~~~~~h~~i~~~~g~--~~~~~~~~~~~l~pd~ii~l~a~p~~i  124 (188)
T PRK04040         82 PVIVDTHATIKTPAGY--LPGLPEWVLEELNPDVIVLIEADPDEI  124 (188)
T ss_pred             CEEEeeeeeeccCCCC--cCCCCHHHHhhcCCCEEEEEeCCHHHH
Confidence            35554311      21  01 222333333346799999999855

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.50  E-value=1e-06  Score=80.22  Aligned_cols=39  Identities=21%  Similarity=0.069  Sum_probs=35.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      +.|.|+|++||||||+++.|++.+|++++|+|++..+..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~   40 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL   40 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence            358999999999999999999999999999999987655

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.50  E-value=8.5e-07  Score=78.67  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      .++.|+|+|.+|+||||+++.|+..+     +..++|.|.+.....+ .+. +..++.+..++.+- .+...+...+..|
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~G~~V   93 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK-DLG-FSEEDRKENIRRIG-EVAKLFVRNGIIV   93 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc-ccC-CCHHHHHHHHHHHH-HHHHHHHcCCCEE
Confidence            56889999999999999999999998     2568899986654332 111 11222333444432 2334444555555


Q ss_pred             EEcCCCCCcccCcHHHHHHHhc------CcEEEEEcChhhh
Q 019172          260 VATLGGQQGAAARADKWQHLYA------GFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~~------G~VV~Ld~s~a~~  294 (345)
                      |....     ....+.|+.++.      -.+|||+++.+..
T Consensus        94 I~d~~-----~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~  129 (184)
T TIGR00455        94 ITSFI-----SPYRADRQMVRELIEKGEFIEVFVDCPLEVC  129 (184)
T ss_pred             EEecC-----CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHH
Confidence            54432     355666666641      2579999998855

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.49  E-value=8.5e-07  Score=76.30  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             EEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHH-HHhcC--CCEEEE
Q 019172          191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSSH--VRAVVA  261 (345)
Q Consensus       191 LIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~-~L~~~--~~~VIA  261 (345)
                      |+|+|||||+|+|+.||+.+|+.+|+.++++++...      .-+.+.+.. |..-=-++-.++++ ++...  .+.+|-
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~-g~~vp~~~v~~ll~~~l~~~~~~~g~il   79 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDN-GELVPDELVIELLKERLEQPPCNRGFIL   79 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHT-TSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHh-hccchHHHHHHHHHHHHhhhcccceeee
Confidence            689999999999999999999999999999987642      123333332 33221222222322 23322  345554


Q ss_pred             cCCCCCcccCcHHHHHHHh-----c----CcEEEEEcChhhh
Q 019172          262 TLGGQQGAAARADKWQHLY-----A----GFTVWLSQTEAMG  294 (345)
Q Consensus       262 tGGG~~~avlr~~~r~~L~-----~----G~VV~Ld~s~a~~  294 (345)
                      .|-     +-+.+..+.|.     .    ..+|+|+++.++.
T Consensus        80 dGf-----Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~  116 (151)
T PF00406_consen   80 DGF-----PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETL  116 (151)
T ss_dssp             ESB------SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHH
T ss_pred             eec-----cccHHHHHHHHHHHhhcccchheeeccccchhhh
Confidence            453     55555444442     1    4699999998755

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.47  E-value=6.9e-07  Score=82.01  Aligned_cols=40  Identities=15%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      .++.|+|.|.+|+||||+++.||+.+|+.++-..|++.+.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~   41 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF   41 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHH
Confidence            4578999999999999999999999999875555544443

>PRK14529 adenylate kinase; Provisional

Probab=98.47  E-value=1e-06  Score=82.71  Aligned_cols=110  Identities=5%  Similarity=0.034  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-HhcC-CCE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSSH-VRA  258 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~~-~~~  258 (345)
                      ++|+|+|+|||||||+++.||+.++++++++.+++.+..      |+.+.+++ ..|.-.--++-..++.+ |... .+.
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g   79 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence            479999999999999999999999999999999887643      23345554 34555444444444443 3222 233


Q ss_pred             EEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhc
Q 019172          259 VVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLS  303 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~  303 (345)
                      +|--|=     +-+.+.-+.|    . .    ..||+|+++.++. ..|..-++
T Consensus        80 ~iLDGf-----PRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l-~~Rl~~R~  127 (223)
T PRK14529         80 WLLDGF-----PRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA-KNRIMGRR  127 (223)
T ss_pred             EEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHhhCCc
Confidence            333332     4444433332    1 1    4699999999876 45533333

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=98.47  E-value=3.7e-07  Score=72.68  Aligned_cols=83  Identities=20%  Similarity=0.484  Sum_probs=68.2

Q ss_pred             eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeeccc-ceeehccc
Q 019172           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK  159 (345)
Q Consensus        81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~-~~~~~~k~  159 (345)
                      |.|+|+..|+.+.|++|.  ...++++.|.+...++.+.+.+.   ..++ +++||..|.|.++.|.+++. .+.+.++|
T Consensus         1 Y~W~Qt~~~V~v~i~~p~--~~~~~dv~v~~~~~~l~v~~~~~---~~~~-~g~L~~~I~~d~Stw~i~~~~~l~i~L~K   74 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPE--DTTKEDIRIKFLPDHISIALKDQ---APLL-EGKLYSSIDHESSTWIIKENKSLEVSLIK   74 (85)
T ss_pred             CccEEeCCEEEEEEECCC--CCChhhEEEEEecCEEEEEeCCC---CeEE-eCcccCcccccCcEEEEeCCCEEEEEEEE
Confidence            899999999999999985  45788999999889999987522   2345 48999999999999999766 48999998


Q ss_pred             cCCCCCcchh
Q 019172          160 QDPELKWPDI  169 (345)
Q Consensus       160 ~~~~~~~~~~  169 (345)
                      .....-||..
T Consensus        75 ~~~~~~W~~L   84 (85)
T cd06493          75 KDEGPTWPEL   84 (85)
T ss_pred             CCCCcccccc
Confidence            7766667754

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.46  E-value=7.5e-07  Score=67.61  Aligned_cols=79  Identities=27%  Similarity=0.548  Sum_probs=64.8

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      ++|.|.|+..++.+.|++++.+ .++.++.|++.++++.|.+........+++ ..||..|.|.++.|.+++..+.+.++
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~-~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~i~i~L~   78 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVD-ISKEDVKVDFTDTSLSVSIKSGDGKEYLLE-GELFGEIDPDESTWKVKDNKIEITLK   78 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTT-SSGGGEEEEEETTEEEEEEEETTSCEEEEE-EEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred             CCeEEEECCCEEEEEEEEcCCC-CChHHeEEEEEeeEEEEEEEccCCceEEEE-EEEeeeEcchhcEEEEECCEEEEEEE
Confidence            5899999999999999996644 557799999999999999885554555566 77999999999999999998888776


Q ss_pred             c
Q 019172          159 K  159 (345)
Q Consensus       159 ~  159 (345)
                      |
T Consensus        79 K   79 (79)
T PF04969_consen   79 K   79 (79)
T ss_dssp             B
T ss_pred             C
Confidence            4

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.45  E-value=9e-07  Score=76.97  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG  263 (345)
                      |+|+|.+||||||+++.|++.+   |  ..++|.|.+.....+. .. +..+...+.++.+.. ..+.+..++..||...
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~-~~-~~~~~~~~~~~~~~~-~a~~l~~~G~~VIid~   78 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD-LG-FSREDREENIRRIAE-VAKLLADAGLIVIAAF   78 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhc-cC-CCcchHHHHHHHHHH-HHHHHHhCCCEEEEcc
Confidence            7899999999999999999999   5  4567888876544321 11 112222344444332 2334444444455433


Q ss_pred             CCCCcccCcHHHHHHHh---c---CcEEEEEcChhhhchhh
Q 019172          264 GGQQGAAARADKWQHLY---A---GFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       264 GG~~~avlr~~~r~~L~---~---G~VV~Ld~s~a~~~~~R  298 (345)
                      +     ...++.|+.++   .   -.+|||++|.+.. ..|
T Consensus        79 ~-----~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~-~~R  113 (149)
T cd02027          79 I-----SPYREDREAARKIIGGGDFLEVFVDTPLEVC-EQR  113 (149)
T ss_pred             C-----CCCHHHHHHHHHhcCCCCEEEEEEeCCHHHH-HHh
Confidence            3     24455555443   1   2479999998854 444

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.44  E-value=1.3e-07  Score=95.14  Aligned_cols=51  Identities=25%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC---chhhhhhccChH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD  239 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~---sI~ei~~~~Gee  239 (345)
                      .|.|+|.+||||||+++.|++ +|++++|+|++..+.+..   .+.++++..|++
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~   56 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD   56 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence            589999999999999999998 899999999998886632   356677777776

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=98.43  E-value=9.1e-07  Score=70.68  Aligned_cols=90  Identities=19%  Similarity=0.395  Sum_probs=74.7

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      ++|.|+|+..+|.+.|.+++......+++.|.+..+++.|.+.+.....-.+..++||..|.|.++.|.+.+..+.+.++
T Consensus         2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~   81 (92)
T cd06468           2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA   81 (92)
T ss_pred             ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence            48999999999999999998554457899999999999999876433343455578999999999999999999999999


Q ss_pred             ccCCCCCcchh
Q 019172          159 KQDPELKWPDI  169 (345)
Q Consensus       159 ~~~~~~~~~~~  169 (345)
                      |... ..||.+
T Consensus        82 K~~~-~~W~~L   91 (92)
T cd06468          82 KKKE-KKWESL   91 (92)
T ss_pred             eCCC-CccCcc
Confidence            9876 567653

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>PLN02422 dephospho-CoA kinase

Probab=98.40  E-value=2.6e-06  Score=80.43  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc--C-chhhhhhccChHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--Q-TIDSWMLAEGSDSV  241 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g--~-sI~ei~~~~Gee~F  241 (345)
                      .|.|+|.+||||||+++.|+ .+|++++|+|++..+.+.  . ...++.+..|++.+
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il   58 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDIL   58 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhc
Confidence            58999999999999999999 589999999999776652  1 24455555565544

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=98.40  E-value=8.1e-07  Score=69.61  Aligned_cols=83  Identities=27%  Similarity=0.513  Sum_probs=70.2

Q ss_pred             eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-cceeehccc
Q 019172           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (345)
Q Consensus        81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~~~~k~  159 (345)
                      |.|+|+..++.+.|.+|.  ..+.+++.|++...++.|++.+.   ..+++ ++||.+|.|.++.|.+++ ..+.+.++|
T Consensus         1 y~W~Qt~~~V~i~i~~~~--~~~~~dv~v~~~~~~l~v~~~~~---~~~l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K   74 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPE--GTKSKDVKVEITPKHLKVGVKGG---EPLLD-GELYAKVKVDESTWTLEDGKLLEITLEK   74 (85)
T ss_pred             CEEEeeCCEEEEEEECCC--CCcceeEEEEEEcCEEEEEECCC---CceEc-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence            899999999999999987  34578999999999999998752   23455 899999999999999999 999999999


Q ss_pred             cCCCCCcchh
Q 019172          160 QDPELKWPDI  169 (345)
Q Consensus       160 ~~~~~~~~~~  169 (345)
                      .+....||..
T Consensus        75 ~~~~~~W~~L   84 (85)
T cd06467          75 RNEGEWWPSL   84 (85)
T ss_pred             CCCCcccccc
Confidence            8765567653

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>PRK08356 hypothetical protein; Provisional

Probab=98.36  E-value=2.6e-06  Score=76.77  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .+.|+|+|+|||||||+++.|++ +|++.|.+.+.+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~   39 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPL   39 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcc
Confidence            36789999999999999999965 899999998743

>TIGR00017 cmk cytidylate kinase

Probab=98.36  E-value=1.3e-06  Score=81.19  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~  223 (345)
                      +.|.|.|++||||||+++.||+.||++++|.|++...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~   39 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA   39 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence            5689999999999999999999999999999987643

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.34  E-value=2.2e-06  Score=79.78  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~  223 (345)
                      ..+.|.|.|++||||||+|+.||+.||++++|.|.++..
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            357899999999999999999999999999999997543

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.32  E-value=4.2e-06  Score=76.54  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=32.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      .|.|+|.+||||||+++.|+. +|++++|+|++..+..
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~   39 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV   39 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence            588999999999999999997 8999999998765543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.30  E-value=2.8e-06  Score=76.08  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET  223 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~  223 (345)
                      |.|+|++||||||+++.|+..+   +..++.+|+++..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~   39 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD   39 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence            6799999999999999999998   4789999998743

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN02842 nucleotide kinase

Probab=98.30  E-value=5.1e-06  Score=86.36  Aligned_cols=119  Identities=13%  Similarity=0.070  Sum_probs=70.5

Q ss_pred             EEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHH-HHhc----CCCE
Q 019172          190 FLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLE-SLSS----HVRA  258 (345)
Q Consensus       190 vLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~-~L~~----~~~~  258 (345)
                      +|+|++||||||+++.||+.+|+.++++++++.+.      .|..+.+++. .|...-.+.-..++. ++..    ..++
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence            47999999999999999999999999999998654      2333555553 232111111122222 2211    2345


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhhchhhhhhhccccccccccceee
Q 019172          259 VVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRL  316 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~l  316 (345)
                      || .|-     +-+....+.|.     -..+|||+++.++. ..|..-+..+.-....|+...
T Consensus        80 IL-DGf-----PRt~~Qa~~Le~~~~~PDlVI~LDvpdevl-leRl~gR~~dp~tG~iYh~~~  135 (505)
T PLN02842         80 LL-DGY-----PRSFAQAQSLEKLKIRPDIFILLDVPDEIL-IDRCVGRRLDPVTGKIYHIKN  135 (505)
T ss_pred             EE-eCC-----CCcHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHhccccccccCCcccccc
Confidence            66 442     44444444453     25799999999876 555433334443444444443

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.29  E-value=7.1e-07  Score=79.48  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |.|+|.+||||||+++.|++ +|++++|+|++..+.+
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~   37 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY   37 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence            78999999999999999999 9999999999988765

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.28  E-value=1.7e-06  Score=91.37  Aligned_cols=101  Identities=10%  Similarity=0.117  Sum_probs=63.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC-E
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR-A  258 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~-~  258 (345)
                      ++.-|+++|++||||||+|+.|++.|     ++.++|.|++.....+. . .+-.+..+.+++.+- ++...+..... +
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~-~-~~~~~~r~~~~~~l~-~~a~~~~~~G~~V  535 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD-L-GFSDADRVENIRRVA-EVARLMADAGLIV  535 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC-C-CCCHHHHHHHHHHHH-HHHHHHHhCCCEE
Confidence            47789999999999999999999997     46899999987543321 1 111222344455542 22223333333 3


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh----c-C-cEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQHLY----A-G-FTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~----~-G-~VV~Ld~s~a~~  294 (345)
                      |+++.      ..+++.|+.++    . + .+|||+++.+..
T Consensus       536 ivda~------~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~  571 (632)
T PRK05506        536 LVSFI------SPFREERELARALHGEGEFVEVFVDTPLEVC  571 (632)
T ss_pred             EEECC------CCCHHHHHHHHHhcccCCeEEEEECCCHHHH
Confidence            33432      35556666554    1 3 689999998865

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.27  E-value=8e-07  Score=90.74  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH--HHH-HHHcCchhhhhhccChHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~--lIE-~~~g~sI~ei~~~~Gee~FRelE~  246 (345)
                      ..+++|+|+|++|+|||++|+.||+.++.+|++.|.  +.+ ...|+.+.++++..++.+|+..+.
T Consensus        45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~  110 (441)
T TIGR00390        45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKE  110 (441)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999994  444 356888888888888888765443

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.27  E-value=1.7e-06  Score=90.13  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      .++.|.|.|++||||||+++.||+.||+.++|+|.+....
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            5688999999999999999999999999999999987654

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.22  E-value=8.2e-06  Score=72.35  Aligned_cols=28  Identities=21%  Similarity=0.044  Sum_probs=25.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +++.|+|.|.+||||||+++.||+.|+.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999953

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.22  E-value=5.7e-06  Score=74.82  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=33.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~  223 (345)
                      ++..|.|+|.+||||||+++.|++.+   .+.+++.|+++..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~   46 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKD   46 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccC
Confidence            45679999999999999999999999   3567899998653

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.21  E-value=1.2e-05  Score=76.57  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=35.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      .|.|+|..||||||++++|++.+|++.||+|.+..+..
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~   40 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQ   40 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence            48899999999999999999999999999999976655

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.14  E-value=7.3e-06  Score=73.80  Aligned_cols=100  Identities=18%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHH--HHHHHHHH---HHHhcCCCE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV--VNGECDVL---ESLSSHVRA  258 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~F--RelE~~vL---~~L~~~~~~  258 (345)
                      ....||+|+|-||+||||+|..||+.+|+++|++-+++++..      ++....+++=  --=|..++   +-+..+++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~   78 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGN   78 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc------chhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence            356899999999999999999999999999999999987642      1111111110  00122222   222233566


Q ss_pred             EEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                      ||..-|.    -+-++-|    -+.||-|..|-... +.|
T Consensus        79 IVDyHgC----d~Fperw----fdlVvVLr~~~s~L-Y~R  109 (176)
T KOG3347|consen   79 IVDYHGC----DFFPERW----FDLVVVLRTPNSVL-YDR  109 (176)
T ss_pred             EEeeccc----Cccchhh----eeEEEEEecCchHH-HHH
Confidence            7764432    2333322    35688888888866 666

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.13  E-value=1.5e-05  Score=69.63  Aligned_cols=30  Identities=27%  Similarity=0.210  Sum_probs=26.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~  217 (345)
                      -|+|.|++||||||+++.|++.|   |+.++..
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~   34 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT   34 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            48999999999999999999999   7666654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.10  E-value=1.5e-05  Score=72.85  Aligned_cols=36  Identities=19%  Similarity=0.151  Sum_probs=32.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |.|+|.+||||||+++.|++ +|+.++|.|++..+..
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~   37 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYT   37 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHH
Confidence            78999999999999999976 6999999999876654

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.07  E-value=1.2e-05  Score=73.92  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~  257 (345)
                      ..++..|+++|.+||||||||.+|+++|-     ..++|+|.+..-.. ..+. +-.++..+-.|+. .++.+-+.. .+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-~dLg-Fs~edR~eniRRv-aevAkll~d-aG   95 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-RDLG-FSREDRIENIRRV-AEVAKLLAD-AG   95 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-CCCC-CChHHHHHHHHHH-HHHHHHHHH-CC
Confidence            33567999999999999999999999874     66899999765433 1111 1112222223222 123333333 34


Q ss_pred             EEEEcC--CCCCcccCcHHHHHHHhcC--cEEEEEcChhhh
Q 019172          258 AVVATL--GGQQGAAARADKWQHLYAG--FTVWLSQTEAMG  294 (345)
Q Consensus       258 ~VIAtG--GG~~~avlr~~~r~~L~~G--~VV~Ld~s~a~~  294 (345)
                      .|+-|.  +=.  ...|...|+.+..|  +-||+++|.+.-
T Consensus        96 ~iviva~ISP~--r~~R~~aR~~~~~~~FiEVyV~~pl~vc  134 (197)
T COG0529          96 LIVIVAFISPY--REDRQMARELLGEGEFIEVYVDTPLEVC  134 (197)
T ss_pred             eEEEEEeeCcc--HHHHHHHHHHhCcCceEEEEeCCCHHHH
Confidence            333222  210  11233344444443  578999998754

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.07  E-value=5.3e-06  Score=76.75  Aligned_cols=38  Identities=24%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      +-|-|+|++||||||+++.+++ +|++.+|+|+.+.+..
T Consensus         3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~   40 (201)
T COG0237           3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV   40 (201)
T ss_pred             eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence            4688999999999999999999 9999999999987544

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.07  E-value=2.5e-05  Score=81.66  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      ..-|+++|.|||||||+|+.+++.+|+..|+.|.+-.                  +..+...+.+.|..+..+||.... 
T Consensus       369 p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------~~~~~~~a~~~L~~G~sVVIDaTn-  429 (526)
T TIGR01663       369 CEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------TQNCLTACERALDQGKRCAIDNTN-  429 (526)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------HHHHHHHHHHHHhCCCcEEEECCC-
Confidence            4568899999999999999999999999999998610                  222333344455666667776544 


Q ss_pred             CCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172          266 QQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       266 ~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~  294 (345)
                           .+++.|+.+    + .|   .+||+++|.++.
T Consensus       430 -----~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~  461 (526)
T TIGR01663       430 -----PDAASRAKFLQCARAAGIPCRCFLFNAPLAQA  461 (526)
T ss_pred             -----CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence                 333333322    2 34   478899988754

Note that the EC number for the kinase function is: 2.7.1.78

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.04  E-value=5.1e-05  Score=69.53  Aligned_cols=37  Identities=14%  Similarity=0.123  Sum_probs=32.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ..|.|+|.+||||||+++.|+. +|++.+|+|.+..+.
T Consensus         6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~   42 (208)
T PRK14731          6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKEL   42 (208)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHH
Confidence            5688999999999999999997 899999999775544

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.95  E-value=4.6e-05  Score=68.87  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lI  221 (345)
                      .+.-|+|.|.+||||||++..+...+   ++..||.|++.
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r   53 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR   53 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence            46678889999999999999999987   79999999973

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.93  E-value=1.7e-05  Score=71.10  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhh---h----------------------hccChHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW---M----------------------LAEGSDS  240 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei---~----------------------~~~Gee~  240 (345)
                      |.|.|..|||+++||+.||+.||++|+|- +++++.+   |.+...+   -                      ...-.+.
T Consensus         2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T PF13189_consen    2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK   80 (179)
T ss_dssp             EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred             EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence            78899999999999999999999999999 6666544   2222111   0                      1111334


Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh---cCcEEEEEcChh
Q 019172          241 VVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEA  292 (345)
Q Consensus       241 FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~---~G~VV~Ld~s~a  292 (345)
                      +...+.+++.++.+.+++||.-=||         ++ .|+   +..-|||.+|.+
T Consensus        81 ~~~~~~~~i~~la~~~~~Vi~GR~a---------~~-il~~~~~~l~V~i~A~~~  125 (179)
T PF13189_consen   81 IFRAQSEIIRELAAKGNCVIVGRCA---------NY-ILRDIPNVLHVFIYAPLE  125 (179)
T ss_dssp             HHHHHHHHHHHHHH---EEEESTTH---------HH-HTTT-TTEEEEEEEE-HH
T ss_pred             HHHHHHHHHHHHhccCCEEEEecCH---------hh-hhCCCCCeEEEEEECCHH
Confidence            4455667788887777777753333         12 444   246899998877

>PLN02840 tRNA dimethylallyltransferase

Probab=97.92  E-value=2.6e-05  Score=79.58  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcC-----chhhhhhccChHHHH
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVV  242 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~-----sI~ei~~~~Gee~FR  242 (345)
                      +..+++.|+|+|++||||||++..||+.++.++|.+|.+              .++..+.     .+-+.-+...-..|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~   96 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF   96 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence            344566799999999999999999999999999999984              1222221     122222334455677


Q ss_pred             HHHHHHHHHHhcCCCEEEEcCC
Q 019172          243 NGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       243 elE~~vL~~L~~~~~~VIAtGG  264 (345)
                      +.-.++++++.+.+...|.+||
T Consensus        97 ~~A~~~I~~i~~rgkiPIvVGG  118 (421)
T PLN02840         97 DDARRATQDILNRGRVPIVAGG  118 (421)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcC
Confidence            7667778888777665555555

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.92  E-value=3.6e-05  Score=75.44  Aligned_cols=79  Identities=16%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~  246 (345)
                      ++-|+|+|++|||||++|..||+.++..+|+.|..-              ++..|.     ++-+.-+......|.+.-.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~   83 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL   83 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence            457999999999999999999999999999999951              222221     1112222233445666556


Q ss_pred             HHHHHHhcCCCEEEEcCC
Q 019172          247 DVLESLSSHVRAVVATLG  264 (345)
Q Consensus       247 ~vL~~L~~~~~~VIAtGG  264 (345)
                      ..++++.+.+..+|-+||
T Consensus        84 ~~i~~i~~~gk~pIlvGG  101 (307)
T PRK00091         84 AAIADILARGKLPILVGG  101 (307)
T ss_pred             HHHHHHHhCCCCEEEECc
Confidence            667776655554444455

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.91  E-value=1.5e-05  Score=81.58  Aligned_cols=57  Identities=12%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH-HHH--HHcCchhhhhhccChHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-LET--FAKQTIDSWMLAEGSDSV  241 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l-IE~--~~g~sI~ei~~~~Gee~F  241 (345)
                      .+.+|+|+|++|+|||++|+.||+.++.+|+..|.- +.+  ..|.+..++++.-.+++|
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~  108 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAV  108 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999963 333  557777777777667765

>COG0645 Predicted kinase [General function prediction only]

Probab=97.91  E-value=6.5e-05  Score=68.28  Aligned_cols=102  Identities=17%  Similarity=0.009  Sum_probs=64.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHH--------HHHHHHHHHHHHhcCCCEE
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDS--------VVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~--------FRelE~~vL~~L~~~~~~V  259 (345)
                      -+++.|.||+||||+|+.|++.||...|..|+......|  ++++-+..-..+        |-++......-|.. ...|
T Consensus         3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g--~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~-G~~V   79 (170)
T COG0645           3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG--VPEETRGPAGLYSPAATAAVYDELLGRAELLLSS-GHSV   79 (170)
T ss_pred             EEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC--CcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC-CCcE
Confidence            467899999999999999999999999999997766667  332222221122        22222222222333 4445


Q ss_pred             EEcCCCCCcccCcHHHHHHHh-----cC---cEEEEEcChhhhchhh
Q 019172          260 VATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~~~~R  298 (345)
                      |.-++     ..++..|+...     .|   ..|++.+++++. .+|
T Consensus        80 VlDa~-----~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~-~~r  120 (170)
T COG0645          80 VLDAT-----FDRPQERALARALARDVGVAFVLIRLEAPEEVL-RGR  120 (170)
T ss_pred             EEecc-----cCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH-HHH
Confidence            55554     46676666554     12   358888888866 444

>TIGR00235 udk uridine kinase

Probab=97.91  E-value=6.1e-05  Score=68.35  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC---CceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~D~lIE  222 (345)
                      ++..|.|+|++||||||+++.|+..++   ..++..|+++.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~   45 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK   45 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence            456788999999999999999999886   67888888753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.91  E-value=3.7e-05  Score=71.06  Aligned_cols=103  Identities=14%  Similarity=0.081  Sum_probs=60.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc-----e-eeCcHHHHH-----HHcCchh-hhhhccChHHHHHHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-----P-LSTKELLET-----FAKQTID-SWMLAEGSDSVVNGECDVLESL  252 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-----f-ID~D~lIE~-----~~g~sI~-ei~~~~Gee~FRelE~~vL~~L  252 (345)
                      +..-|.|+|++||||||+++.|+..+...     . +..|++...     ..|.-.. ........+.+.+    ++..+
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~----~l~~l  107 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA----LLRRL  107 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH----HHHHH
Confidence            45678889999999999999999988632     2 677765421     1111000 0001111222222    22221


Q ss_pred             h--------------------------cCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhh
Q 019172          253 S--------------------------SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMG  294 (345)
Q Consensus       253 ~--------------------------~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~  294 (345)
                      .                          ...++||..|++.   ......|..++  .+.+|||+++.+..
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~---l~~~~~~~~l~~~~D~vi~v~~~~~~~  174 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYL---LLDEEPWRRLAGLFDFTIFLDAPAEVL  174 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcce---eeccccHHHHHhhCCEEEEEECCHHHH
Confidence            1                          0234788888873   44455777665  47899999999854

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.89  E-value=1.1e-05  Score=65.74  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      |+|.|++|+||||+++.+|+.++++++..|-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~   31 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG   31 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence            6899999999999999999999998865554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02748 tRNA dimethylallyltransferase

Probab=97.87  E-value=3.8e-05  Score=79.33  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=58.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGE  245 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE  245 (345)
                      ++..|+|+|+.|+|||++|..||+.++..+|++|..              .++..|.+     +-++-+...-..|++.-
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A  100 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA  100 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence            456799999999999999999999999999999974              23333321     22233444556788877


Q ss_pred             HHHHHHHhcCCCEEEEcCC
Q 019172          246 CDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       246 ~~vL~~L~~~~~~VIAtGG  264 (345)
                      ..+++++.+.+...|-+||
T Consensus       101 ~~~I~~I~~rgk~PIlVGG  119 (468)
T PLN02748        101 VPLIEEILSRNGLPVIVGG  119 (468)
T ss_pred             HHHHHHHHhcCCCeEEEcC
Confidence            8888888777766665666

>PRK13973 thymidylate kinase; Provisional

Probab=97.86  E-value=0.00015  Score=66.57  Aligned_cols=33  Identities=30%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~  217 (345)
                      +|+=|+|-|..||||||+++.|++.|   |++++-+
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            46779999999999999999999999   8888866

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.86  E-value=4.2e-05  Score=58.51  Aligned_cols=29  Identities=31%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~  217 (345)
                      |+|+|.+||||||+++.|++.|   ++.+++.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence            7899999999999999999995   4444443

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.86  E-value=9.9e-06  Score=73.48  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      +-|.|+|..||||||++++|++ +|++.+|+|++..+.+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~   38 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELY   38 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCT
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHh
Confidence            3588999999999999999999 9999999999866554

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=97.85  E-value=4.6e-05  Score=57.97  Aligned_cols=83  Identities=30%  Similarity=0.577  Sum_probs=69.7

Q ss_pred             EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccCC
Q 019172           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP  162 (345)
Q Consensus        83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~  162 (345)
                      |+|+..++.+.+++|+..   .+++.|++.+.++.|.+.+.......++ ..|+..|.|.++.|.+++..+.+.+.|...
T Consensus         1 W~Q~~~~v~i~v~~~~~~---~~~~~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~   76 (84)
T cd06463           1 WYQTLDEVTITIPLKDVT---KKDVKVEFTPKSLTVSVKGGGGKEYLLE-GELFGPIDPEESKWTVEDRKIEITLKKKEP   76 (84)
T ss_pred             CcccccEEEEEEEcCCCC---ccceEEEEecCEEEEEeeCCCCCceEEe-eEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence            789999999999999844   7799999989999999887533444566 569999999999999999999999999887


Q ss_pred             CCCcchh
Q 019172          163 ELKWPDI  169 (345)
Q Consensus       163 ~~~~~~~  169 (345)
                      ...|+..
T Consensus        77 ~~~W~~l   83 (84)
T cd06463          77 GEWWPRL   83 (84)
T ss_pred             CCCCccc
Confidence            6677753

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>PRK06696 uridine kinase; Validated

Probab=97.85  E-value=4.7e-05  Score=70.11  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---CCceee--CcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID--~D~lI  221 (345)
                      ..-|.|.|.+||||||+|+.||+.|   |.+.+-  +|+++
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            4578889999999999999999999   666655  89886

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.84  E-value=5.5e-05  Score=67.91  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE  222 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE  222 (345)
                      |.|.|.+||||||+++.|++.|     +...|.+|+++.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            6789999999999999999997     467899999985

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK12338 hypothetical protein; Provisional

Probab=97.84  E-value=0.00015  Score=71.63  Aligned_cols=42  Identities=26%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCcee-eCcHHHHHHHc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK  226 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-D~D~lIE~~~g  226 (345)
                      ++..|+|.|.+|+||||+|+.||+++|+.++ ++|.+.+.+.|
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            3567889999999999999999999999988 55555444444

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.82  E-value=7.7e-05  Score=68.25  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=32.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET  223 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~  223 (345)
                      |.|.|.+||||||+|+.|++.+ +..+|.+|+++..
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            7789999999999999999999 7999999998653

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.81  E-value=0.00016  Score=64.18  Aligned_cols=26  Identities=19%  Similarity=0.028  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +++-|+|.|+.||||||+++.|++.|
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999987

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.81  E-value=6.2e-05  Score=73.31  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=53.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECDVL  249 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~~vL  249 (345)
                      |+|+|++|+|||+++..||+.++..+|.+|.+-              ++..|.     ++-++-+...-..|.+.-.+.+
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i   81 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI   81 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence            789999999999999999999999999999951              122221     1222333444456666667777


Q ss_pred             HHHhcCCCEEEEcCC
Q 019172          250 ESLSSHVRAVVATLG  264 (345)
Q Consensus       250 ~~L~~~~~~VIAtGG  264 (345)
                      +++.+.+...|.+||
T Consensus        82 ~~~~~~g~~pi~vGG   96 (287)
T TIGR00174        82 ADITARGKIPLLVGG   96 (287)
T ss_pred             HHHHhCCCCEEEEcC
Confidence            887776665665666

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK07667 uridine kinase; Provisional

Probab=97.80  E-value=0.00011  Score=66.30  Aligned_cols=38  Identities=8%  Similarity=0.035  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~  224 (345)
                      .-|.|.|.+||||||+++.|++.|+     ...++.|+++...
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER   60 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence            4677899999999999999999874     5599999976543

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=97.79  E-value=8.9e-05  Score=61.35  Aligned_cols=85  Identities=19%  Similarity=0.364  Sum_probs=70.3

Q ss_pred             ceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCC-ccceeeeccccccccCCCceeeecccceeehcc
Q 019172           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-FITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        80 ~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      .|.|+|+..+|.+.|++++     .+++.|.+...++.|++..... ..-.++ ..||..|.|.++.|-+.+..+.|.|+
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~-----~~~~~V~~~~~~l~v~~~~~~~~~~y~~~-~~L~~~I~pe~s~~~v~~~kveI~L~   75 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPD-----AKDPKIKLEPTSLSFKAKGGGGGKKYEFD-LEFYKEIDPEESKYKVTGRQIEFVLR   75 (108)
T ss_pred             ceeeeECCCEEEEEEEeCC-----CCCcEEEEECCEEEEEEEcCCCCeeEEEE-eEhhhhccccccEEEecCCeEEEEEE
Confidence            6999999999999999998     2889999999999999976432 223344 69999999999999999999999999


Q ss_pred             ccCCCCCcchhH
Q 019172          159 KQDPELKWPDIV  170 (345)
Q Consensus       159 ~~~~~~~~~~~~  170 (345)
                      |...+..|+.+.
T Consensus        76 K~~~~~~W~~L~   87 (108)
T cd06465          76 KKEAGEYWPRLT   87 (108)
T ss_pred             ECCCCCCCcccc
Confidence            977444677664

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.76  E-value=4.4e-05  Score=71.88  Aligned_cols=38  Identities=26%  Similarity=0.261  Sum_probs=34.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ..|.|=||+||||||+|+.||+.|||.|+|+..+....
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            67889999999999999999999999999999986543

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.72  E-value=9.2e-05  Score=66.28  Aligned_cols=27  Identities=22%  Similarity=0.149  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .++.|+|+|++||||||+++.|+..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            577899999999999999999999885

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.72  E-value=0.00019  Score=69.08  Aligned_cols=97  Identities=14%  Similarity=0.015  Sum_probs=52.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt  262 (345)
                      -|+|+|.|||||||+++.|++.+.     ..+++-|++.     +.-..+.....|...|..-....++.++...+||..
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D   77 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRNDYADSKKEKEARGSLKSAVERALSKDTIVILD   77 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEe
Confidence            388999999999999999999743     4456644444     111123344455566665444455555556788877


Q ss_pred             CCCCCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172          263 LGGQQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~  294 (345)
                      +.-     .-...|-.|    + .+   -+||++++.+.-
T Consensus        78 d~n-----YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~  112 (270)
T PF08433_consen   78 DNN-----YIKGMRYELYCLARAYGTTFCVIYCDCPLETC  112 (270)
T ss_dssp             S--------SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred             CCc-----hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence            663     333333333    3 22   389999998753

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK06761 hypothetical protein; Provisional

Probab=97.70  E-value=0.00018  Score=69.95  Aligned_cols=35  Identities=14%  Similarity=-0.033  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      ++-|+|+|++||||||+++.|++.|+...++.+.+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~   37 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY   37 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence            45699999999999999999999999765555543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.69  E-value=0.00011  Score=71.50  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .-|+|+|++||||||+++.|+ .+|+.++|.-.
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~   38 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP   38 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC
Confidence            469999999999999999996 56998886643

>COG4639 Predicted kinase [General function prediction only]

Probab=97.69  E-value=0.00024  Score=64.32  Aligned_cols=99  Identities=13%  Similarity=0.021  Sum_probs=68.4

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ  267 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~  267 (345)
                      -++|+|.+||||||.++.  ..+....+++|++-.......-.+......++.++.++..+-+.|..+.-.||..-    
T Consensus         4 LvvL~G~~~sGKsT~ak~--n~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt----   77 (168)
T COG4639           4 LVVLRGASGSGKSTFAKE--NFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT----   77 (168)
T ss_pred             EEEEecCCCCchhHHHHH--hCCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc----
Confidence            478999999999999995  36788999999976644222223333444566788888777777777777788432    


Q ss_pred             cccCcHHHHHHHh-----cC---cEEEEEcChhhh
Q 019172          268 GAAARADKWQHLY-----AG---FTVWLSQTEAMG  294 (345)
Q Consensus       268 ~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~  294 (345)
                        -++++.|+.+.     .|   .+||++.|...-
T Consensus        78 --n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c  110 (168)
T COG4639          78 --NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC  110 (168)
T ss_pred             --cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence              25666666553     13   478888888754

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.68  E-value=9.3e-05  Score=66.51  Aligned_cols=33  Identities=27%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC---C------ceeeCcHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG---Y------TPLSTKELL  221 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg---~------~fID~D~lI  221 (345)
                      |.|.|++||||||+|+.|+..|+   .      .++..|.+.
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            77899999999999999999998   2      366677764

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.62  E-value=0.0001  Score=64.57  Aligned_cols=27  Identities=19%  Similarity=0.063  Sum_probs=23.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ++-|+|+|++||||||+++.|++.+..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence            467999999999999999999997653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.62  E-value=0.00013  Score=62.79  Aligned_cols=24  Identities=21%  Similarity=0.113  Sum_probs=21.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      |+|+|++||||||+++.|++.+.-
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            789999999999999999998653

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.60  E-value=5e-05  Score=61.68  Aligned_cols=22  Identities=32%  Similarity=0.228  Sum_probs=21.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh
Q 019172          189 IFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      |+|.|.+|+||||||+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999

...

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.60  E-value=0.00054  Score=62.86  Aligned_cols=109  Identities=12%  Similarity=0.023  Sum_probs=73.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHHHH---cC--chhhhhhccChHHHHHHHHHHHHHHhcCC----
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDVLESLSSHV----  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~~~---g~--sI~ei~~~~Gee~FRelE~~vL~~L~~~~----  256 (345)
                      +.++++|.||+|||||-+.+.+.+ ++.++.-.++.-+.+   |.  .-+++ ..--.+.-+++..++.+++.+..    
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-Rklp~e~Q~~lq~~Aa~rI~~~~~~ii   83 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-RKLPLENQRELQAEAAKRIAEMALEII   83 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-hcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence            778999999999999999999999 888899888754443   21  22233 23344555666666666655543    


Q ss_pred             ---CEEEEcCCCCCcccCcHH-HHHHHhcCcEEEEEcChhhhchhh
Q 019172          257 ---RAVVATLGGQQGAAARAD-KWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       257 ---~~VIAtGGG~~~avlr~~-~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                         ++.|-|.+|.  .+.-|. -.+.|.-..+|.|.++++.+...|
T Consensus        84 vDtH~~IkTP~Gy--lpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR  127 (189)
T COG2019          84 VDTHATIKTPAGY--LPGLPSWVLEELNPDVIVLLEADPEEILERR  127 (189)
T ss_pred             EeccceecCCCcc--CCCCcHHHHHhcCCCEEEEEeCCHHHHHHHH
Confidence               3445566664  233443 455666788999999998774444

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.59  E-value=6.2e-05  Score=68.86  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      |.|.|+|-||+||||+++.|+ .||+.++++.+++.+.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~   37 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN   37 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence            579999999999999999999 9999999999887653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.57  E-value=5.9e-05  Score=81.06  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      .|.|.|++|+||||+|+.||+.|||.|+|++.+....
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            6899999999999999999999999999999987653

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.57  E-value=0.00051  Score=71.22  Aligned_cols=43  Identities=26%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc-eeeCcHHHHHHHcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ  227 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-fID~D~lIE~~~g~  227 (345)
                      ++..|+++|++|+||||++..||.++|+. ++.+|.+-+.+.++
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            46788899999999999999999999998 77999976655543

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.55  E-value=0.00057  Score=60.73  Aligned_cols=30  Identities=30%  Similarity=0.385  Sum_probs=26.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      |++.|..||||||+++.|++.+|+.++.-+
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep   31 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEP   31 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcccccc
Confidence            789999999999999999999988766433

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.54  E-value=0.00052  Score=64.68  Aligned_cols=112  Identities=16%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCc---eeeCcHHHHHHHcCchh-------hhhhccChHHHHHHHHHHHHH--Hh--
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQTID-------SWMLAEGSDSVVNGECDVLES--LS--  253 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~---fID~D~lIE~~~g~sI~-------ei~~~~Gee~FRelE~~vL~~--L~--  253 (345)
                      -|-|.|.+||||||+++.|++.|+-.   .|..|++.......+..       +--.+..++.|.+--..+++.  +.  
T Consensus        10 iIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P   89 (218)
T COG0572          10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLP   89 (218)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCccccc
Confidence            45669999999999999999999966   88889987543332222       111233444444432222210  00  


Q ss_pred             ----------------cCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhhchhhhhhhccccc
Q 019172          254 ----------------SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMGKLLRVFVLSLHLR  307 (345)
Q Consensus       254 ----------------~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~~~~Rv~v~~~h~R  307 (345)
                                      ...++||..|=-    ++..+   .|+  ....|||+++.+.- ..|...++..+|
T Consensus        90 ~yd~~~~~r~~~~i~~~p~~VVIvEGi~----~l~d~---~lr~~~d~kIfvdtd~D~R-liRri~RD~~~r  153 (218)
T COG0572          90 VYDYKTHTREPETIKVEPNDVVIVEGIL----LLYDE---RLRDLMDLKIFVDTDADVR-LIRRIKRDVQER  153 (218)
T ss_pred             ccchhcccccCCccccCCCcEEEEeccc----ccccH---HHHhhcCEEEEEeCCccHH-HHHHHHHHHHHh
Confidence                            013467766653    34442   333  57899999997644 444444444433

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.52  E-value=0.00016  Score=66.09  Aligned_cols=29  Identities=14%  Similarity=0.048  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      .++-|+|+|++|||||||++.|++. +..|
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~   40 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER-KLPF   40 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc-CCcc
Confidence            5678999999999999999999754 4444

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=97.51  E-value=0.00011  Score=81.05  Aligned_cols=43  Identities=26%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      .|.++.|.|-|++||||||+|+.||++||+.|+|++.++...+
T Consensus        31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            4455789999999999999999999999999999999987643

>PLN02772 guanylate kinase

Probab=97.48  E-value=0.00084  Score=68.29  Aligned_cols=113  Identities=14%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             ccceeeeeeecCcccccc-cceeEecCCce----EEEEeeccCCc------cceeeecccc---ccccCCCceeeecccc
Q 019172           87 SAEIELRLQLGSLEIQSS-KDIFVDADGTC----LTVRVNRSGSF------ITLIETNQLF---DKIKPTETIWYIDEDQ  152 (345)
Q Consensus        87 ~~Ele~rl~l~~~~~~~s-r~i~I~~~d~~----L~~~vls~~~~------~tlIe~k~l~---~~i~p~Etiw~~Dd~~  152 (345)
                      +.++.++++|.|...... .-..+.|+|+.    ..-.|++.++.      -.+++..+++   .+.-|.+++|+..-++
T Consensus        30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t  109 (398)
T PLN02772         30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDT  109 (398)
T ss_pred             eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcCC
Confidence            344556666666433332 45677777732    44466666541      1234334433   2344788999955544


Q ss_pred             eeehcc--ccCCC-CCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          153 LVINLK--KQDPE-LKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       153 ~~~~~k--~~~~~-~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      --+.-|  ..+.| ..|+.-          . ..-..+.|+|+|++|+||+||.+.|.+.+
T Consensus       110 ~~~~~~~~~~~~eV~~~~~~----------~-~~~~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        110 PFVREQKKLLGTEVVAWSKG----------V-RGNAEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             HHHHhhcccccceeeecccC----------C-CCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            333222  22222 122210          0 11135679999999999999999998765

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.47  E-value=0.00014  Score=57.49  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +.+++|+|++|+||||+++.+|..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5679999999999999999999999876

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00063  Score=67.70  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGE  245 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE  245 (345)
                      +.+.|+|+|..|+|||-|+-.||.+++-..|..|.+              .++.-|++     .-..-.+.-...|+..-
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            567899999999999999999999999999999885              12222322     11111244456788888


Q ss_pred             HHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh-c-----------------------CcEEEEEcChhhh
Q 019172          246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-A-----------------------GFTVWLSQTEAMG  294 (345)
Q Consensus       246 ~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-~-----------------------G~VV~Ld~s~a~~  294 (345)
                      ..+++++.++++.=|..||+.       .+.+.|- .                       -.++||+++.+.+
T Consensus        86 ~~aie~I~~rgk~PIv~GGs~-------~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL  151 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGSN-------SYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVL  151 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCch-------hhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHH
Confidence            888999988776544445541       2344332 3                       3589999998754

>PTZ00301 uridine kinase; Provisional

Probab=97.42  E-value=0.00056  Score=63.54  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLE  222 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lIE  222 (345)
                      .-|-|.|.+||||||+|+.|++.|.       ...+..|.+..
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            4578899999999999999998872       34677788764

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.42  E-value=0.00015  Score=61.01  Aligned_cols=29  Identities=31%  Similarity=0.379  Sum_probs=26.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      +|+|+|++|+|||++++.+|+.++.+++.
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            58999999999999999999999988854

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK09087 hypothetical protein; Validated

Probab=97.41  E-value=0.00017  Score=67.34  Aligned_cols=139  Identities=11%  Similarity=-0.001  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC------chhhhhhcc-ChHHHHHHHHHHHHHHhcCCC-E
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAE-GSDSVVNGECDVLESLSSHVR-A  258 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~------sI~ei~~~~-Gee~FRelE~~vL~~L~~~~~-~  258 (345)
                      ..++|.|++|+|||++++.+++..+..|++.+++..+....      -++++-... .++.|    ..++..+...+. .
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~l----f~l~n~~~~~g~~i  120 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGL----FHLINSVRQAGTSL  120 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHH----HHHHHHHHhCCCeE
Confidence            45999999999999999999999999999997654433210      122221100 11111    223334433333 4


Q ss_pred             EEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccccccceeeeeec-cCCCChHHHh
Q 019172          259 VVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVS-SFSRTNEHIM  330 (345)
Q Consensus       259 VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i~-~~~r~~~~~~  330 (345)
                      ||++....... ...++-+..+..|.++-|..+...+ ......+....|.+.=--.-++|+. ...|+.++++
T Consensus       121 lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~-~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~  193 (226)
T PRK09087        121 LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL-LSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQ  193 (226)
T ss_pred             EEECCCChHHhccccccHHHHHhCCceeecCCCCHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence            44433211000 1234455556678888888776533 1121222222232222223344443 3556666665

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00067  Score=72.33  Aligned_cols=104  Identities=19%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc-----------------HHHHHHHcCc-----hhhh--hhccChHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK-----------------ELLETFAKQT-----IDSW--MLAEGSDS  240 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D-----------------~lIE~~~g~s-----I~ei--~~~~Gee~  240 (345)
                      .++.++|-|+||||||.+|+++|..||+||+..-                 ++++++.+.+     |++|  +.-..+.+
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a  301 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA  301 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH
Confidence            4678999999999999999999999999999753                 2344444322     3333  33445668


Q ss_pred             HHHHHHHHHHHHhcC----------CCEEEEcCCCCCcccCcHHHHH-HHh-c---CcEEEEEcChhh
Q 019172          241 VVNGECDVLESLSSH----------VRAVVATLGGQQGAAARADKWQ-HLY-A---GFTVWLSQTEAM  293 (345)
Q Consensus       241 FRelE~~vL~~L~~~----------~~~VIAtGGG~~~avlr~~~r~-~L~-~---G~VV~Ld~s~a~  293 (345)
                      =|++|+++..+|+..          +.-||.-|+     --||+..+ .|+ .   .+-|-|.+|.++
T Consensus       302 qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA-----TnRPDslDpaLRRaGRFdrEI~l~vP~e~  364 (802)
T KOG0733|consen  302 QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA-----TNRPDSLDPALRRAGRFDREICLGVPSET  364 (802)
T ss_pred             HHHHHHHHHHHHHHhhhcccccccCCCCeEEEec-----CCCCcccCHHHhccccccceeeecCCchH
Confidence            899999998887631          122443444     34555554 554 3   457888888663

>PRK06893 DNA replication initiation factor; Validated

Probab=97.35  E-value=0.0011  Score=61.49  Aligned_cols=107  Identities=11%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH-------HHHHHcCc---hhhhhhccChHHHHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL-------LETFAKQT---IDSWMLAEGSDSVVNGECDVLE  250 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l-------IE~~~g~s---I~ei~~~~Gee~FRelE~~vL~  250 (345)
                      ...++|.|++|+|||++++.+|..+     +..|+++++.       ++...+..   ++++....|.+.+.+.-..++.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n  118 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN  118 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence            4568999999999999999999875     6778888532       11111111   4444433344433332233444


Q ss_pred             HHhcCCCEEEEcCCCCCcccC---cHHHHHHHhcCcEEEEEcChh
Q 019172          251 SLSSHVRAVVATLGGQQGAAA---RADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       251 ~L~~~~~~VIAtGGG~~~avl---r~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      .+......+|.+++...-..+   -+.-+..+..|.++.|..+..
T Consensus       119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~  163 (229)
T PRK06893        119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD  163 (229)
T ss_pred             HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence            544434434333221000001   133333444688888887765

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.35  E-value=0.00074  Score=66.28  Aligned_cols=77  Identities=8%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECD  247 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~~  247 (345)
                      +-|+|+|+.|||||.+|-.||+.. -..|.+|..-              ++..+.     .+-+..+...-..|.+.-.+
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~~   83 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEALK   83 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHHH
Confidence            468999999999999999999995 5999999962              222221     12223344455567777778


Q ss_pred             HHHHHhcCCCEEEEcCC
Q 019172          248 VLESLSSHVRAVVATLG  264 (345)
Q Consensus       248 vL~~L~~~~~~VIAtGG  264 (345)
                      +++++...+...|-+||
T Consensus        84 ~i~~i~~~gk~PilvGG  100 (300)
T PRK14729         84 IIKELRQQKKIPIFVGG  100 (300)
T ss_pred             HHHHHHHCCCCEEEEeC
Confidence            88888777666555666

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=97.35  E-value=0.00052  Score=53.30  Aligned_cols=83  Identities=20%  Similarity=0.393  Sum_probs=68.0

Q ss_pred             EEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccC
Q 019172           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (345)
Q Consensus        82 ~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~  161 (345)
                      +|.|+.+++.+.+++++.   ...++.|++...++.|.+.......-.++ -+||..|.|.++.|.+.+..+.+.++|..
T Consensus         1 dW~Qt~~~v~i~v~~~~~---~~~~v~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~vei~L~K~~   76 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNV---DKEDVKVEFNEQSLSVSIILPGGSEYQLE-LDLFGPIDPEQSKVSVLPTKVEITLKKAE   76 (84)
T ss_pred             CccccCCEEEEEEEECCC---CHHHCEEEEecCEEEEEEECCCCCeEEEe-cccccccCchhcEEEEeCeEEEEEEEcCC
Confidence            599999999999999972   36789999989899998876523334455 67999999999999999999999999977


Q ss_pred             CCCCcchh
Q 019172          162 PELKWPDI  169 (345)
Q Consensus       162 ~~~~~~~~  169 (345)
                      . ..||..
T Consensus        77 ~-~~W~~L   83 (84)
T cd06466          77 P-GSWPSL   83 (84)
T ss_pred             C-CCCccC
Confidence            6 467753

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.34  E-value=0.00069  Score=61.49  Aligned_cols=26  Identities=4%  Similarity=-0.078  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +++-|+|+|++|+|||||++.|.+.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            46779999999999999999998876

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.33  E-value=0.0019  Score=58.72  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET  223 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE~  223 (345)
                      ++-|+|-|.|-|||||||+.|.+.+.-+|+  ..|.+++.
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~   40 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM   40 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence            356999999999999999999999997755  55887774

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.00071  Score=64.21  Aligned_cols=24  Identities=33%  Similarity=0.260  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      -|+|+|+|||||||.|+.||+.|.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHH
Confidence            488999999999999999999986

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.31  E-value=0.002  Score=59.34  Aligned_cols=29  Identities=31%  Similarity=0.314  Sum_probs=25.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      |+|-|..||||||+++.||+.|++.++.-
T Consensus         2 I~iEG~~GsGKSTl~~~L~~~l~~~~~~e   30 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKLGMKYFPE   30 (219)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeec
Confidence            78999999999999999999999866633

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.31  E-value=0.00044  Score=60.41  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             HHHHhhhhhc-CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          175 SLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       175 ~l~a~~~~~l-~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .++..+.+.+ .+..|+|.|.+|+||||++|.+++.||+.
T Consensus        10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            3444444555 46789999999999999999999999975

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02348 phosphoribulokinase

Probab=97.31  E-value=0.00049  Score=69.93  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC--------------------ceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY--------------------TPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~--------------------~fID~D~lI  221 (345)
                      --|-|.|.+||||||+++.|++.||-                    ..|.+|+++
T Consensus        50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            45668999999999999999999973                    479999986

>PRK13974 thymidylate kinase; Provisional

Probab=97.30  E-value=0.0011  Score=60.71  Aligned_cols=27  Identities=26%  Similarity=0.075  Sum_probs=24.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+.-|+|.|..||||||.++.|++.|.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999985

>PHA00729 NTP-binding motif containing protein

Probab=97.24  E-value=0.00028  Score=66.73  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+|+|+|.+|+||||+|..||++++.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~   43 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFW   43 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            58999999999999999999999863

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.23  E-value=0.0004  Score=68.95  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI  215 (345)
                      ...+++|+|.|++|+||||+++.||+.||++++
T Consensus        61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            345789999999999999999999999999997

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.23  E-value=0.0006  Score=67.03  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=35.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc-eeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-fID~D~lIE~~  224 (345)
                      .+..|+|.|++|+||||+|+.||++||++ ++.+|.+.+.+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~  131 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM  131 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence            45789999999999999999999999998 78888876443

>PRK06620 hypothetical protein; Validated

Probab=97.22  E-value=0.0011  Score=61.39  Aligned_cols=100  Identities=6%  Similarity=0.056  Sum_probs=56.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc----hhhhhhccChHHHHHHH-HHHHHHHhcCCC-EEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----IDSWMLAEGSDSVVNGE-CDVLESLSSHVR-AVV  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s----I~ei~~~~Gee~FRelE-~~vL~~L~~~~~-~VI  260 (345)
                      ..++|.|++|+|||+++++++...+..++......++..+..    ++++      +.+.+.+ -.++..+...+. .||
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi------~~~~~~~lf~l~N~~~e~g~~ili  118 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDI------ENWQEPALLHIFNIINEKQKYLLL  118 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEecc------ccchHHHHHHHHHHHHhcCCEEEE
Confidence            569999999999999999999999887766444333322211    2222      1121111 123333333334 444


Q ss_pred             EcCCCCCcccCcHHHHHHHhcCcEEEEEcChhh
Q 019172          261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM  293 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~  293 (345)
                      ++-.-.....+ ++-+..+..|.++-|..+...
T Consensus       119 ts~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~  150 (214)
T PRK06620        119 TSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDE  150 (214)
T ss_pred             EcCCCccccch-HHHHHHHhCCceEeeCCCCHH
Confidence            43322111123 555555567989999987653

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.21  E-value=0.0021  Score=60.05  Aligned_cols=108  Identities=12%  Similarity=-0.004  Sum_probs=59.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH---HHH-c---C---chhhhhhccChHHHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE---TFA-K---Q---TIDSWMLAEGSDSVVNGECDVL  249 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE---~~~-g---~---sI~ei~~~~Gee~FRelE~~vL  249 (345)
                      ...+++|.|++|+|||++++.++..+.     ..|+..|+...   +.. +   .   -++++-.-.|.+.+.+.=..++
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~  123 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLY  123 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHH
Confidence            346899999999999999999998765     57888877421   111 1   0   1333322223222222223344


Q ss_pred             HHHhcCCC-EEEEcCCC-CCcc-cCcHHHHHHHhcCcEEEEEcChh
Q 019172          250 ESLSSHVR-AVVATLGG-QQGA-AARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       250 ~~L~~~~~-~VIAtGGG-~~~a-vlr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      ..+...++ .+|.+|-- .... ...++-+..+..|.++-|..+..
T Consensus       124 n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~  169 (235)
T PRK08084        124 NRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSD  169 (235)
T ss_pred             HHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCH
Confidence            44433332 34444432 1000 02344555555789999987654

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.21  E-value=0.00054  Score=64.95  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      .+.+|+|.|++|+|||++|+.||+.+|.+++-
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~   51 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVML   51 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            57899999999999999999999999999883

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>smart00072 GuKc Guanylate kinase homologues

Probab=97.20  E-value=0.00075  Score=60.30  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++.|+|+|++|+||+|+++.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            4679999999999999999999886

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.18  E-value=0.00051  Score=55.19  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~  219 (345)
                      .+..++|+|++|+|||++++.++..+   +.+++..|.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~   55 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA   55 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence            36789999999999999999999998   666665543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.18  E-value=0.0006  Score=59.25  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      +|+|+|.+|+||||+++.||+. |++++  ++.....
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~   34 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREI   34 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHH
Confidence            4899999999999999999999 99998  5554443

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.17  E-value=0.0004  Score=70.72  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      +...+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus       106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~  141 (412)
T PRK05342        106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA  141 (412)
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence            346789999999999999999999999999997664

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.0015  Score=64.46  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE~  246 (345)
                      ..-|+|+|+.++|||.+|-.||+++|.+.|.+|..              .+++.|.+     +-+..+...-..|.+.-.
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~   82 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDAL   82 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHH
Confidence            34589999999999999999999999999999996              23333321     233444455556666666


Q ss_pred             HHHHHHhcCCCEEEEcCC
Q 019172          247 DVLESLSSHVRAVVATLG  264 (345)
Q Consensus       247 ~vL~~L~~~~~~VIAtGG  264 (345)
                      ..+.++..++..-|-.||
T Consensus        83 ~~i~~i~~rgk~pIlVGG  100 (308)
T COG0324          83 AAIDDILARGKLPILVGG  100 (308)
T ss_pred             HHHHHHHhCCCCcEEEcc
Confidence            667777766553333344

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.15  E-value=0.0018  Score=63.67  Aligned_cols=46  Identities=11%  Similarity=0.228  Sum_probs=37.8

Q ss_pred             hhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       171 ~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      .+|+.+...+.+.+ .+.|+|+|.+|+||||+++.|++.+|.+++.-
T Consensus       148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E  193 (325)
T TIGR01526       148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAWE  193 (325)
T ss_pred             HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEee
Confidence            56777766555544 56899999999999999999999999998654

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.0048  Score=57.24  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC-------chhhhhhccChHHHHHHHHHHHHH-HhcC-
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-------TIDSWMLAEGSDSVVNGECDVLES-LSSH-  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~-------sI~ei~~~~Gee~FRelE~~vL~~-L~~~-  255 (345)
                      ...-||++|.|||||-|....+++.+||.++.+++++.+....       -|.++++. |.-.=-+.=..+|++ +.+. 
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~-G~iVP~ei~~~LL~~am~~~~   85 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKN-GDLVPVEITLSLLEEAMRSSG   85 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHc-CCcCcHHHHHHHHHHHHHhcC
Confidence            3567899999999999999999999999999999998776543       13333322 321111111222222 2111 


Q ss_pred             --CCEEEEcCCCCCcccCcHHHHHHHh---c---CcEEEEEcChhhh
Q 019172          256 --VRAVVATLGGQQGAAARADKWQHLY---A---GFTVWLSQTEAMG  294 (345)
Q Consensus       256 --~~~VIAtGGG~~~avlr~~~r~~L~---~---G~VV~Ld~s~a~~  294 (345)
                        ...+| -|=     +-..+++..+.   .   .+++|++.++++-
T Consensus        86 ~~~~fLI-DGy-----PR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~  126 (195)
T KOG3079|consen   86 DSNGFLI-DGY-----PRNVDQLVEFERKIQGDPDFVLFFDCPEETM  126 (195)
T ss_pred             CCCeEEe-cCC-----CCChHHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence              22444 232     67777777663   2   5799999998854

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.14  E-value=0.00058  Score=69.16  Aligned_cols=47  Identities=13%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             hHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       169 ~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      ....|+-|...+.+. ..++|+|+|.+|||||||++.||+.+|..++.
T Consensus       203 p~~~w~~i~~~vr~~-~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        203 PFRYWEYIPTEVRPF-FVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             HHHHHHhcCHHHhhC-CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            557899988855554 57889999999999999999999999988654

>PF13173 AAA_14: AAA domain

Probab=97.13  E-value=0.00055  Score=57.59  Aligned_cols=37  Identities=16%  Similarity=0.082  Sum_probs=32.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLE  222 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lIE  222 (345)
                      ++.++|.|++|+||||+++.+++.+.    +-+++.|+.-.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~   42 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD   42 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence            46789999999999999999999876    88999988654

>PRK15453 phosphoribulokinase; Provisional

Probab=97.06  E-value=0.00048  Score=67.37  Aligned_cols=38  Identities=13%  Similarity=0.049  Sum_probs=33.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE  222 (345)
                      +...|.|+|.+||||||+++.|++.|+     ..+++.|.++.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            356799999999999999999999885     67899999874

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.00  E-value=0.0044  Score=58.39  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      +-|+|-.|+|||||++.+- ++|++.||+|.+-.+..
T Consensus         4 VGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv   39 (225)
T KOG3220|consen    4 VGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV   39 (225)
T ss_pred             EEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence            5689999999999999996 99999999999977665

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.00  E-value=0.0014  Score=60.76  Aligned_cols=27  Identities=26%  Similarity=0.152  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|+-|+|+||+|+|||||.++|=+..+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~   29 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK   29 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence            577899999999999999999977664

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.97  E-value=0.0019  Score=66.47  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .+++++|.|+||+|||++++.+|..++++|+..+.
T Consensus        87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~  121 (495)
T TIGR01241        87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG  121 (495)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence            35689999999999999999999999999988763

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.95  E-value=0.0021  Score=54.30  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=26.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCcH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE  219 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D~  219 (345)
                      +|++.|.+|+||||++..||+.+   |.+  .+|+|.
T Consensus         1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            38899999999999999998877   544  488875

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PHA02244 ATPase-like protein

Probab=96.94  E-value=0.0013  Score=66.66  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .+.+|+|+|++|+|||++++.+|..+|++|+..+.+.
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            4778999999999999999999999999999887654

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00084  Score=67.11  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      |.+.||.|+||.|||||-+|+-||+.|+.||-=+|.
T Consensus        95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            467899999999999999999999999999987775

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=96.90  E-value=0.0082  Score=56.62  Aligned_cols=99  Identities=12%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC-----ceeeCcHHHHHHHcC-chhhhhhccChHHHHHHHH---HHH----HHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ-TIDSWMLAEGSDSVVNGEC---DVL----ESL  252 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~-----~fID~D~lIE~~~g~-sI~ei~~~~Gee~FRelE~---~vL----~~L  252 (345)
                      +-.|++||.|+.|||++|+.|++.|.|     ..+...++..+..+. .-.++|....+++.+..|.   .+|    .-|
T Consensus        12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l   91 (222)
T PF01591_consen   12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEWL   91 (222)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            456888999999999999999999875     566777888887765 3345666666666555443   233    334


Q ss_pred             hcC-CCEEEEcCCCCCcccCcHHHHHHHh-----cC-cEEEEEc
Q 019172          253 SSH-VRAVVATLGGQQGAAARADKWQHLY-----AG-FTVWLSQ  289 (345)
Q Consensus       253 ~~~-~~~VIAtGGG~~~avlr~~~r~~L~-----~G-~VV~Ld~  289 (345)
                      ... .++-|-.+-.     .+.+-|+.|.     .| .++||..
T Consensus        92 ~~~~G~VAI~DATN-----~T~~RR~~l~~~~~~~~~~vlFIEs  130 (222)
T PF01591_consen   92 QEEGGQVAIFDATN-----STRERRKMLVERFKEHGIKVLFIES  130 (222)
T ss_dssp             HTS--SEEEEES--------SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             hcCCCeEEEEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEEE
Confidence            422 3344433332     4555666553     24 6888876

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.89  E-value=0.0056  Score=55.93  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~  223 (345)
                      ....++|.|.+|+|||++++.++..+     .+.|+++++..+.
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~   84 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA   84 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence            35689999999999999999999987     7889998887554

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.89  E-value=0.001  Score=68.00  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|+|++|+|||++|+.||+.++.+|+-.|
T Consensus       115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d  148 (413)
T TIGR00382       115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD  148 (413)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence            3568999999999999999999999999997555

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0033  Score=57.28  Aligned_cols=103  Identities=16%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      +|+.|+++|.+||||||+|-.|.+.|-     .-.+|+|.+..-. +..+. +-+++..+-.|+.- ++ .+|-. +.+|
T Consensus        30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL-N~DL~-F~a~dR~ENIRRig-eV-aKLFA-Dag~  104 (207)
T KOG0635|consen   30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL-NKDLG-FKAEDRNENIRRIG-EV-AKLFA-DAGV  104 (207)
T ss_pred             CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc-ccccC-cchhhhhhhHHHHH-HH-HHHHh-ccce
Confidence            689999999999999999999999885     3457888864311 11111 11233334444432 12 22322 2244


Q ss_pred             EEcCCCCCccc---CcHHHHHHHhcC--cEEEEEcChhhh
Q 019172          260 VATLGGQQGAA---ARADKWQHLYAG--FTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~av---lr~~~r~~L~~G--~VV~Ld~s~a~~  294 (345)
                      |+--.=+  .+   .|...|+++..|  +-||.++|...-
T Consensus       105 iciaSlI--SPYR~dRdacRel~~~~~FiEvfmdvpl~vc  142 (207)
T KOG0635|consen  105 ICIASLI--SPYRKDRDACRELLPEGDFIEVFMDVPLEVC  142 (207)
T ss_pred             eeeehhc--CchhccHHHHHHhccCCCeEEEEecCcHHHh
Confidence            4322211  12   345566676654  367899998754

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.88  E-value=0.0032  Score=56.83  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI  221 (345)
                      .+.+|+|+|++|+|||++++.++..+.     +.|++++++.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            467899999999999999999998763     5577777664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.88  E-value=0.0054  Score=53.67  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=27.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      .|+++|++|+||||+++.+|..+   |  .-++|+|.+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            47889999999999999998875   4  457899954

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.87  E-value=0.0013  Score=61.06  Aligned_cols=33  Identities=21%  Similarity=0.159  Sum_probs=28.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      |-|.|.+||||||+++.|+..|.       ..+|.+|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            56899999999999999999984       4578889875

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.86  E-value=0.001  Score=63.27  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      .+++|.||||.||||+|..+|+.+|..|.-+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence            5799999999999999999999999888544

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.85  E-value=0.00091  Score=60.03  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~  219 (345)
                      +.|+|+|.+||||||+|..|+..++  +.|+.+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~   36 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ   36 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence            5799999999999999999999988  45666643

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.0011  Score=62.38  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lIE~~~  225 (345)
                      .+.|+|-||-|+||||+|++||+.||    +..++-|.+++...
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY   47 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFY   47 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHH
Confidence            46799999999999999999999999    44566677766655

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.82  E-value=0.0017  Score=56.15  Aligned_cols=29  Identities=31%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .+..|+|.|..||||||+.|.+++.||..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            45678899999999999999999999865

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.80  E-value=0.0012  Score=68.75  Aligned_cols=35  Identities=17%  Similarity=0.087  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .++.|+|.|++|+|||.+|+.+|..+|++++..|-
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~  292 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV  292 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence            46789999999999999999999999999988763

>PLN02924 thymidylate kinase

Probab=96.76  E-value=0.0049  Score=57.58  Aligned_cols=30  Identities=20%  Similarity=0.083  Sum_probs=26.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      ..++-|+|-|..||||||+++.|++.|...
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~   43 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL   43 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            356789999999999999999999999644

>CHL00181 cbbX CbbX; Provisional

Probab=96.71  E-value=0.0015  Score=63.21  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHHHHHHHc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK  226 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~lIE~~~g  226 (345)
                      .+.+|+|.|+||+||||+|+.+|+.+.         +-.++.++++.+..|
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g  108 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG  108 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence            356799999999999999999999762         234455566554443

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.69  E-value=0.0016  Score=65.34  Aligned_cols=34  Identities=15%  Similarity=0.068  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~  197 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  197 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEee
Confidence            3578999999999999999999999999987664

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.69  E-value=0.0016  Score=62.76  Aligned_cols=41  Identities=17%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHHHHHHHc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK  226 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~lIE~~~g  226 (345)
                      +.+++|.|++|+||||+|+.+|+.+.         +.+++.++++.+..|
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g  107 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG  107 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence            45899999999999999999888773         334555666544333

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.68  E-value=0.0017  Score=68.54  Aligned_cols=74  Identities=24%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             eeccccccccCCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          131 ETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       131 e~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +....|+|-+|..    -||.+++  .||-+       -++.|-.--+.....++..-.+|+|++||||||.-+.||+.|
T Consensus        68 ~~elW~eKy~P~t----~eeLAVH--kkKI~-------eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel  134 (634)
T KOG1970|consen   68 EFELWVEKYKPRT----LEELAVH--KKKIS-------EVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL  134 (634)
T ss_pred             ccchhHHhcCccc----HHHHhhh--HHhHH-------HHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence            3456779999984    7777755  33311       124453322445567777888899999999999999999999


Q ss_pred             CCceeeC
Q 019172          211 GYTPLST  217 (345)
Q Consensus       211 g~~fID~  217 (345)
                      |+.+++=
T Consensus       135 g~~~~Ew  141 (634)
T KOG1970|consen  135 GYQLIEW  141 (634)
T ss_pred             Cceeeee
Confidence            9988763

>CHL00176 ftsH cell division protein; Validated

Probab=96.67  E-value=0.0093  Score=64.04  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +++|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is  248 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS  248 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            568999999999999999999999999999764

>PRK10646 ADP-binding protein; Provisional

Probab=96.64  E-value=0.0037  Score=55.97  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             HHHHHhhhhhcC-CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          174 ESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       174 ~~l~a~~~~~l~-~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +.++..+.+.++ +..|+|.|..||||||+.|.+++.||.
T Consensus        15 ~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         15 LDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            344444555665 457889999999999999999999997

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.64  E-value=0.0013  Score=64.05  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=30.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE  222 (345)
                      |.|.|.+||||||+++.|++.|+     ..+|+.|++..
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            78899999999999999998775     57899999865

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.64  E-value=0.0019  Score=58.06  Aligned_cols=26  Identities=27%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+++|+|++|+|||.+++.||+.|..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47899999999999999999999995

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.64  E-value=0.0097  Score=58.65  Aligned_cols=36  Identities=17%  Similarity=0.034  Sum_probs=29.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      ++..|.|+|++|+||||++..||..+.     .-++++|.+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            356789999999999999999998873     456788864

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0032  Score=67.48  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT  228 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s  228 (345)
                      .++.|++-|+||||||++||.+|..-++.|+..  -+++-++.|.+
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeS  512 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGES  512 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCch
Confidence            367899999999999999999999999999877  56666666644

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=96.62  E-value=0.0056  Score=47.01  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=60.3

Q ss_pred             EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccCC
Q 019172           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP  162 (345)
Q Consensus        83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~  162 (345)
                      |.|+..++.+++.+||  + +..++.|+..+..+.|..   ..  -.++ .+|+..|.|.++.|.+++..+.+.+.|...
T Consensus         1 W~Qt~~~v~i~i~~p~--v-~~~~v~v~~~~~~l~i~~---~~--~~~~-~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~   71 (78)
T cd06469           1 WSQTDEDVKISVPLKG--V-KTSKVDIFCSDLYLKVNF---PP--YLFE-LDLAAPIDDEKSSAKIGNGVLVFTLVKKEP   71 (78)
T ss_pred             CcccCCEEEEEEEeCC--C-ccccceEEEecCEEEEcC---CC--EEEE-EeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence            7899999999999998  3 356788888887777755   11  2233 699999999999999999999999998765


Q ss_pred             CCCcch
Q 019172          163 ELKWPD  168 (345)
Q Consensus       163 ~~~~~~  168 (345)
                       ..||.
T Consensus        72 -~~W~~   76 (78)
T cd06469          72 -GIWEA   76 (78)
T ss_pred             -Ccccc
Confidence             35654

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=96.59  E-value=0.006  Score=48.05  Aligned_cols=83  Identities=16%  Similarity=0.362  Sum_probs=65.9

Q ss_pred             EEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccC
Q 019172           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (345)
Q Consensus        82 ~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~  161 (345)
                      +|.|+..+|.+.|.+++.+   ..++.|++.+.++.|+++......-.++ -+||..|.|.++.|-+=+..+.+.++|.+
T Consensus         1 dW~Q~~~~V~iti~~k~~~---~~~~~v~~~~~~l~~~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~kiei~L~K~~   76 (84)
T cd06489           1 DWYQTESQVVITILIKNVK---PEDVSVEFEKRELSATVKLPSGNDYSLK-LHLLHPIVPEQSSYKILSTKIEIKLKKTE   76 (84)
T ss_pred             CccccCCEEEEEEEECCCC---HHHCEEEEeCCEEEEEEECCCCCcEEEe-eecCceecchhcEEEEeCcEEEEEEEcCC
Confidence            5899999999999988722   5789999999999999876543334455 58999999999999887888999999876


Q ss_pred             CCCCcchh
Q 019172          162 PELKWPDI  169 (345)
Q Consensus       162 ~~~~~~~~  169 (345)
                      . ..||..
T Consensus        77 ~-~~W~~L   83 (84)
T cd06489          77 A-IRWSKL   83 (84)
T ss_pred             C-CCCccC
Confidence            4 467653

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.58  E-value=0.014  Score=54.27  Aligned_cols=143  Identities=17%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHHHHHHc----Cc---------------hhhhhhccChHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLETFAK----QT---------------IDSWMLAEGSDS  240 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lIE~~~g----~s---------------I~ei~~~~Gee~  240 (345)
                      ..++|.|++|+|||.+.+.++..+.       ..|++++++......    ..               ++++-.-.|.+.
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~  114 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR  114 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence            3699999999999999999976542       458888887544321    11               333323334443


Q ss_pred             HHHHHHHHHHHHhcCCC-EEEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccccccceeeee
Q 019172          241 VVNGECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEF  318 (345)
Q Consensus       241 FRelE~~vL~~L~~~~~-~VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~  318 (345)
                      ..+.--.++..+...+. +||++..-.... .+.++-+..|..|.++-|..|...+ .-+...+..++|.+.=--..++|
T Consensus       115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~-r~~il~~~a~~~~~~l~~~v~~~  193 (219)
T PF00308_consen  115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED-RRRILQKKAKERGIELPEEVIEY  193 (219)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH-HHHHHHHHHHHTT--S-HHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH-HHHHHHHHHHHhCCCCcHHHHHH
Confidence            44433455666655554 555544422111 1455666677789999998775522 22222223344433322233344


Q ss_pred             e-ccCCCChHHHh
Q 019172          319 V-SSFSRTNEHIM  330 (345)
Q Consensus       319 i-~~~~r~~~~~~  330 (345)
                      + ..+.|+..+++
T Consensus       194 l~~~~~~~~r~L~  206 (219)
T PF00308_consen  194 LARRFRRDVRELE  206 (219)
T ss_dssp             HHHHTTSSHHHHH
T ss_pred             HHHhhcCCHHHHH
Confidence            4 23455655554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.58  E-value=0.0038  Score=64.24  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ...++|.|++|+||||+++.||+.+|+.+++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln   71 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN   71 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence            578999999999999999999999999999875

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.58  E-value=0.0025  Score=62.95  Aligned_cols=34  Identities=15%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.++|.|++|+|||++++.+|..++.+|+...
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~  188 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  188 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence            3577999999999999999999999999988765

Many proteins may score above the trusted cutoff because an internal

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0064  Score=61.39  Aligned_cols=47  Identities=15%  Similarity=0.243  Sum_probs=38.0

Q ss_pred             hhHHHHH--HhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          171 ESWESLT--AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       171 ~~~~~l~--a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      +.|.+.+  ........++||+.||+.|.|||.+||.||+..|.||+-.
T Consensus        33 NR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          33 NRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             HHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            5676544  2244455689999999999999999999999999999843

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.57  E-value=0.0018  Score=60.95  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+++|.|++|+||||+|+.+|+.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.56  E-value=0.0066  Score=56.26  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ...++|+|++|+||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            34688999999999999999999886

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.51  E-value=0.0059  Score=62.43  Aligned_cols=34  Identities=15%  Similarity=0.022  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      .+.+|-||||+||||||+.+|..+++.|......
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            5788999999999999999999999999988765

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.50  E-value=0.01  Score=56.47  Aligned_cols=31  Identities=16%  Similarity=0.082  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      ..+++|.|++|+|||++++.+|..++..+.-
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~   60 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKI   60 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4579999999999999999999999977543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK07429 phosphoribulokinase; Provisional

Probab=96.50  E-value=0.0021  Score=63.60  Aligned_cols=36  Identities=25%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC---CceeeCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~D~lI  221 (345)
                      ...|.|+|.+||||||+++.|+..|+   ...+.+|+++
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            34678899999999999999999998   5678999975

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.48  E-value=0.0039  Score=65.44  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      .+-++|.||+||||||..+.||+.||+.+++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            4567789999999999999999999988776

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.48  E-value=0.0053  Score=66.33  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~  519 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR  519 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            3567999999999999999999999999998765

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.48  E-value=0.0033  Score=55.88  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++.|+|+|++|+||+||++.|.+.+.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            357899999999999999999998875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.46  E-value=0.0024  Score=61.51  Aligned_cols=33  Identities=18%  Similarity=0.046  Sum_probs=29.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL  221 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lI  221 (345)
                      |.|+|.+||||||+++.|+..+   +...+.+|++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            6789999999999999999888   46689999875

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.45  E-value=0.0084  Score=60.45  Aligned_cols=35  Identities=14%  Similarity=0.014  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ...+++|.|++|+||||+|+.+|+.++..|+..+.
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a   69 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA   69 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            34589999999999999999999999999987654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.45  E-value=0.0084  Score=57.73  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l  220 (345)
                      +..|.|+|+.|+||||++..||..+    |   ..+|++|.+
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            5678999999999999999998866    3   458999985

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.42  E-value=0.0024  Score=55.99  Aligned_cols=41  Identities=20%  Similarity=0.114  Sum_probs=27.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeC----cHHHHHHHcCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST----KELLETFAKQT  228 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~----D~lIE~~~g~s  228 (345)
                      +++|.|.+|.||||+++.||+.+|..|.+.    |-+.....|..
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~   45 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP   45 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee
Confidence            478999999999999999999999999865    44455556643

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=96.41  E-value=0.023  Score=56.00  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh--hccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM--LAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~--~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      -+++.|+.|+|||.|.+.|++. |+..||+...-+ ..|-....+-  ...-...|+..-...|.++.....+||-+-+.
T Consensus       129 ~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~-hrGs~fG~~~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e~es~  206 (311)
T TIGR03167       129 LIVLGGMTGSGKTELLHALANA-GAQVLDLEGLAN-HRGSSFGALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDESR  206 (311)
T ss_pred             eeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHH-hcCcccCCCCCCCCCchHHHHHHHHHHHHhCCCCceEEEEeCch
Confidence            3568899999999999999888 899999999544 3342222221  12234667554444444443333456644443


Q ss_pred             CCccc-CcHHHHHHHhcCcEEEEEcChh
Q 019172          266 QQGAA-ARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       266 ~~~av-lr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      ..|.+ +-+.-|+.|+.+.+|+|+.|.+
T Consensus       207 ~ig~~~~p~~l~~~m~~~~~i~i~~~~e  234 (311)
T TIGR03167       207 RIGRVALPDALFEAMRAAPLVELEASLE  234 (311)
T ss_pred             hhccccCCHHHHHHHhhCCEEEEECCHH
Confidence            22333 5555888999999999999987

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK05439 pantothenate kinase; Provisional

Probab=96.41  E-value=0.0052  Score=60.67  Aligned_cols=35  Identities=20%  Similarity=0.094  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      ..|.|.|.+||||||+++.|++.|+       ...|.+|+++
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            3577899999999999999999875       4578999986

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.40  E-value=0.021  Score=43.28  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=26.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---CCceeeCc
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D  218 (345)
                      |++.|..|+||||++..||..|   |+..+=.|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            6788999999999999999998   67776666

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.40  E-value=0.0034  Score=63.69  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~  211 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV  211 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            4688999999999999999999999999998764

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.38  E-value=0.0048  Score=60.12  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ..+.+.+++|.|++|.|||++++.+|+.+|++|+..
T Consensus        39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i   74 (329)
T COG0714          39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRI   74 (329)
T ss_pred             HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence            466789999999999999999999999999888764

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.37  E-value=0.013  Score=62.88  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHHHHHHHc----Cc---------------hhhhhhccChHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETFAK----QT---------------IDSWMLAEGSDSV  241 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~lIE~~~g----~s---------------I~ei~~~~Gee~F  241 (345)
                      .++|.|.+|+|||.|+..++..+       ...|+.+++++.+...    ..               |+++....|.+..
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t  395 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST  395 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence            39999999999999999999875       3478888887655421    01               2333222333333


Q ss_pred             HHHHHHHHHHHhcC-CCEEEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChh
Q 019172          242 VNGECDVLESLSSH-VRAVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       242 RelE~~vL~~L~~~-~~~VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      .+.-..++..+... ..+||++-...... .+.+.-+..|..|.++.|..+..
T Consensus       396 qeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~  448 (617)
T PRK14086        396 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL  448 (617)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence            22223455555443 34555433321000 12333444444699999998765

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.35  E-value=0.036  Score=55.38  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh-hccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~-~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      .-+++.|+.|||||+|...|++. |...+|+-.+.+- .|-....+- ...-...|...-...|.++.....++|=+-+-
T Consensus       142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es~  219 (345)
T PRK11784        142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDESR  219 (345)
T ss_pred             ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-ccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEeccc
Confidence            34778999999999999999876 8889999996653 332322222 23445567766666666665533455522221


Q ss_pred             CCc-ccCcHHHHHHHhcCcEEEEEcChh
Q 019172          266 QQG-AAARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       266 ~~~-avlr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      .-| +.+-+.-++.|+.+.+|+|++|.+
T Consensus       220 ~IG~~~lP~~l~~~m~~~~~v~i~~~~e  247 (345)
T PRK11784        220 RIGRVHLPEALYEAMQQAPIVVVEAPLE  247 (345)
T ss_pred             cccCccCCHHHHHHHhhCCEEEEECCHH
Confidence            111 457777889999999999999987

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0035  Score=67.87  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ..++|.-++|+||||.|||++|+-+|++||..|+-+
T Consensus       346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            456778899999999999999999999999999875

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.31  E-value=0.0041  Score=52.59  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE  222 (345)
                      .+..+.|+|++||||||+.+.+.  -|--.++.|++.+
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~   49 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE   49 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence            35779999999999999999987  4445667777543

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.30  E-value=0.0052  Score=63.66  Aligned_cols=129  Identities=16%  Similarity=0.099  Sum_probs=68.5

Q ss_pred             CcceEEeecccceeeeeeecCcccc------------------c-ccceeEecCCceEEE--EeeccCCccceeeecccc
Q 019172           78 TSQYEFSDGSAEIELRLQLGSLEIQ------------------S-SKDIFVDADGTCLTV--RVNRSGSFITLIETNQLF  136 (345)
Q Consensus        78 ~~~y~~~~~~~Ele~rl~l~~~~~~------------------~-sr~i~I~~~d~~L~~--~vls~~~~~tlIe~k~l~  136 (345)
                      -+.|=|.-+.+.|.+.+.+......                  + .+++..+-||.+.-+  .=+.++-..+-|+ +.|.
T Consensus        64 y~vyl~~~d~~~~~l~~~~~~t~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  142 (459)
T PRK11331         64 YPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGLDYTRFA-SMLD  142 (459)
T ss_pred             eEEEEEeccCCEEEEEEecCCCccHHHHHHHHhhHHHHHHHHHhcccCCCccccCceeEeeccccccCCCHHHHH-HHHh
Confidence            3478888888888888888775551                  1 235666666655322  1123333334444 5555


Q ss_pred             ccccCCCceeeecccceeehcccc-------CCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          137 DKIKPTETIWYIDEDQLVINLKKQ-------DPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       137 ~~i~p~Etiw~~Dd~~~~~~~k~~-------~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +.+.-+..+-..+.+.+.-..+.+       -.+.-.+.  ...+.+   ......+++|+|.|++|+|||++|+.||..
T Consensus       143 ~~i~~~~~~~~s~~~~~~p~~~~~~y~~~~~l~d~~i~e--~~le~l---~~~L~~~~~iil~GppGtGKT~lA~~la~~  217 (459)
T PRK11331        143 NIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPE--TTIETI---LKRLTIKKNIILQGPPGVGKTFVARRLAYL  217 (459)
T ss_pred             hHHHHHHHhhccccccCCchhcccchhHHHHhhcccCCH--HHHHHH---HHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence            544433222222222111111110       00011111  011111   223446889999999999999999999999


Q ss_pred             hCC
Q 019172          210 LGY  212 (345)
Q Consensus       210 Lg~  212 (345)
                      ++.
T Consensus       218 l~~  220 (459)
T PRK11331        218 LTG  220 (459)
T ss_pred             hcC
Confidence            863

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.30  E-value=0.0037  Score=65.57  Aligned_cols=29  Identities=17%  Similarity=0.142  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .++.|+|.|+||+|||++++.+|..|+.+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            35789999999999999999999999866

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.23  E-value=0.0082  Score=55.08  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +.|+|+|+.|+||||....||.++.     ..++.+|.+
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            5689999999999999888888775     567888876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.23  E-value=0.037  Score=53.27  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      ++.|.++|++|+||||++..||..+   |  ..++|+|.+
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~  111 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF  111 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            4678899999999999999998877   4  446899953

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.23  E-value=0.015  Score=59.87  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      .+..|+++|++|+||||++..||..|.     .-++++|.+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            356799999999999999999998773     556888876

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.21  E-value=0.0049  Score=63.44  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.++|.|++|+|||++++.+|..++.+|+..+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~  249 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVV  249 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence            4578999999999999999999999999988653

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.20  E-value=0.0045  Score=62.35  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+-++|+|++|+||||+++.||+.|+.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            466789999999999999999999975

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.014  Score=59.83  Aligned_cols=35  Identities=17%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      .+.|+|.|+||+|||.+|+.+|..++.+|+..+.-
T Consensus       276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~  310 (494)
T COG0464         276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS  310 (494)
T ss_pred             CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence            45799999999999999999999999999988875

>PRK13695 putative NTPase; Provisional

Probab=96.16  E-value=0.0063  Score=53.60  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCce
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP  214 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~f  214 (345)
                      |+|+|+|.+|+||||+.+.++..+   |+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            679999999999999999988776   5653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.15  E-value=0.0069  Score=52.28  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=19.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      ..+.+++|+|.+|+|||++.+.+.+.+.-.
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            356789999999999999999887776543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.14  E-value=0.014  Score=63.15  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D  218 (345)
                      ...|++|+|+||+|||++++.||+++          ++.++..|
T Consensus       202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~  245 (731)
T TIGR02639       202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD  245 (731)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence            46689999999999999999999998          77788777

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.12  E-value=0.021  Score=58.80  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      +..|.|+|+.|+||||++..||..|   |  .-++++|.+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~  139 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF  139 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence            4578899999999999999999877   4  467899986

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.11  E-value=0.005  Score=56.33  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .++|+|+|+||+||||+.+.+|+.|.
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            57899999999999999999997664

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.08  E-value=0.0055  Score=54.95  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|+|+|.+|+||||+.+.+.+.|
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            68999999999999999999999

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.08  E-value=0.0088  Score=53.94  Aligned_cols=41  Identities=17%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh-----hCCceeeCcHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLETFA  225 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~-----Lg~~fID~D~lIE~~~  225 (345)
                      .+.+++|.|++|+|||.+|..++..     ....|++.++++++..
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            4789999999999999999999863     4477899999988765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.08  E-value=0.0087  Score=58.23  Aligned_cols=31  Identities=16%  Similarity=0.069  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      ..+++|.|++|+||||+++.+|..++..+.-
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~   81 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRI   81 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            4589999999999999999999999987643

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.07  E-value=0.0095  Score=53.29  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             HHhhhhhc-CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          177 TAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       177 ~a~~~~~l-~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .....+.+ .+..|+|.|.-||||||+.|.+++.||.
T Consensus        15 g~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          15 GERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             HHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            33344555 6788999999999999999999999994

>PRK08727 hypothetical protein; Validated

Probab=96.06  E-value=0.025  Score=52.71  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CC--ceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~--~fID~D~lI  221 (345)
                      ..|+|.|.+|+|||.+++.++..+   |.  .|+.++++.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            459999999999999999985543   43  577777654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.03  E-value=0.023  Score=58.19  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~l  220 (345)
                      +..|+|+|+.|+||||++..||..+       ...+|++|.+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~  262 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY  262 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence            5689999999999999888887654       2678999985

>PRK09183 transposase/IS protein; Provisional

Probab=96.02  E-value=0.0076  Score=57.43  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~  223 (345)
                      .+.+++|+|++|+|||+++..++..+   |  ..|+++.+++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~  144 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ  144 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence            46889999999999999999997553   3  346666666543

>PRK08181 transposase; Validated

Probab=96.02  E-value=0.018  Score=55.59  Aligned_cols=40  Identities=23%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~  224 (345)
                      .+.+++|+|++|+|||.++..++..+   |  .-|+.+++++++.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            56889999999999999999998643   4  6678888887754

>PF05729 NACHT: NACHT domain

Probab=96.01  E-value=0.0065  Score=51.12  Aligned_cols=27  Identities=15%  Similarity=0.230  Sum_probs=23.2

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      -++|.|.+|+||||+++.++..+....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            478999999999999999998876443

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.99  E-value=0.0052  Score=50.56  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=21.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      |+|.|++|+|||++++.||+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998876

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.99  E-value=0.0061  Score=66.62  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +++|+|++|+|||++|+.||+.++.+++..|
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id  520 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD  520 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence            6889999999999999999999998886544

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.98  E-value=0.012  Score=60.53  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l  220 (345)
                      +..|+|+|++|+||||++..||..+    |  ..++++|.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~  263 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY  263 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence            4568899999999999999999755    2  567999985

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.98  E-value=0.0064  Score=49.91  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..++|+|.+|+|||++++.+++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999987

>PRK06526 transposase; Provisional

Probab=95.98  E-value=0.026  Score=53.93  Aligned_cols=40  Identities=10%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~  224 (345)
                      .+.+++|+|++|+|||+++..|+..+   |  .-|+...+++++.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l  141 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL  141 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence            46799999999999999999997764   3  3355555555544

>cd03112 CobW_like The function of this protein family is unkown

Probab=95.98  E-value=0.022  Score=50.09  Aligned_cols=21  Identities=10%  Similarity=-0.018  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHh
Q 019172          189 IFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ++|+|+.||||||+.+.+.+.
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            679999999999999987765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0058  Score=66.38  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ..+|+-|.++||||.|||+||+.+|++||..|+-.
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf  469 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF  469 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence            44688999999999999999999999999999864

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.95  E-value=0.035  Score=58.05  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..++|.|++|+||||+|+.+|+.|++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4458999999999999999999999985

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=95.95  E-value=0.015  Score=62.29  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ++.|+|+|++|+|||++++.+|..++.+|+..+.
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~  218 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG  218 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence            4579999999999999999999999999987653

>TIGR00763 lon ATP-dependent protease La

Probab=95.94  E-value=0.0071  Score=65.94  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ++..++|+|++|+|||++|+.+|..++.+|+..
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            456799999999999999999999999999854

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.93  E-value=0.0095  Score=53.09  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ..++.|+|+|++|+||||++..|.++ |..++.=|.
T Consensus        12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~   46 (149)
T cd01918          12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDR   46 (149)
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence            35789999999999999999998876 888885553

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.92  E-value=0.038  Score=48.37  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh-----CCceeeCc
Q 019172          189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTK  218 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D  218 (345)
                      |.++|..|+||||+.+.++..+     ....++.|
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D   36 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID   36 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            6789999999999999999986     24456666

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0074  Score=62.54  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=33.2

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .|.+.||+|+|+.|+|||-+|+-||+-|+.||.=+|-
T Consensus       223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDc  259 (564)
T KOG0745|consen  223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDC  259 (564)
T ss_pred             eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecc
Confidence            4567899999999999999999999999999986664

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.89  E-value=0.012  Score=57.98  Aligned_cols=26  Identities=8%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+|+|+|.+||||||+.+.|+..+
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            57899999999999999999998764

>TIGR00959 ffh signal recognition particle protein

Probab=95.88  E-value=0.034  Score=57.13  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l  220 (345)
                      +..|+++|++|+||||++..||..|    |  ..++|+|.+
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            4578899999999999988888774    2  557999954

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.87  E-value=0.035  Score=56.61  Aligned_cols=37  Identities=5%  Similarity=0.144  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-----C--CceeeCcHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLET  223 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-----g--~~fID~D~lIE~  223 (345)
                      ..++|.|++|+|||++++.++..+     +  ..|+.++++..+
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            459999999999999999999887     3  347777776543

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=95.87  E-value=0.0088  Score=60.80  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~  219 (345)
                      ..+.|+.|+|.|+||+|||.+|-.+|+.||  .||+.+..
T Consensus        46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg   85 (398)
T PF06068_consen   46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG   85 (398)
T ss_dssp             T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG
T ss_pred             ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc
Confidence            456789999999999999999999999999  88876643

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.86  E-value=0.0075  Score=65.16  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~  244 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN  244 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence            3578999999999999999999999999988654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.86  E-value=0.012  Score=55.82  Aligned_cols=37  Identities=11%  Similarity=0.007  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCce-eeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f-ID~D~lIE~~  224 (345)
                      +-|.|+|++||||||+++.+.+ .|.++ +.+-+-+.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~   38 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI   38 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence            4588999999999999999855 46666 7776666543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.86  E-value=0.021  Score=58.35  Aligned_cols=34  Identities=9%  Similarity=0.027  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      +..+.|-|++|+|||.+++++|..+|.+||-++.
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa  181 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA  181 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence            4567779999999999999999999999887664

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.84  E-value=0.0075  Score=50.23  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|.+||||||+.+.|+..+.
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            578899999999999999999987763

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.84  E-value=0.0072  Score=59.03  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=29.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      +.-|-|.|++||||||+++.|+..+.       ...+.+|.+.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            34577899999999999999988775       4467888765

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=95.83  E-value=0.046  Score=45.90  Aligned_cols=87  Identities=17%  Similarity=0.348  Sum_probs=67.2

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      +.+.|.|....|.++|.++.     .+++.|++...+|.|+..+. .-...-.+-++|..|.|.++.+..=.-.+.+.++
T Consensus         2 p~v~WaQr~~~V~ltI~v~d-----~~d~~v~l~~~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~   75 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVED-----SKDVKVDFEKSKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLR   75 (106)
T ss_pred             CcceeeECCCEEEEEEEeCC-----CCCcEEEEecCEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEE
Confidence            46789999999999999998     68999999999999988663 1111233468999999999888887777888888


Q ss_pred             ccCCCCCcchhHh
Q 019172          159 KQDPELKWPDIVE  171 (345)
Q Consensus       159 ~~~~~~~~~~~~~  171 (345)
                      |.+....||....
T Consensus        76 K~~~~~~WprL~k   88 (106)
T cd00237          76 KGKEGVAWPRLTK   88 (106)
T ss_pred             eCCCCCCCchhhc
Confidence            8664434666543

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.81  E-value=0.04  Score=56.39  Aligned_cols=36  Identities=17%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l  220 (345)
                      .+..|.|+|+.|+||||++..||..+     ...++++|.+
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence            35678899999999999999999766     2568999987

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.021  Score=54.60  Aligned_cols=121  Identities=17%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cCchh----hhhhc----cChHHHHHHHHHHHHHHhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQTID----SWMLA----EGSDSVVNGECDVLESLSS  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~sI~----ei~~~----~Gee~FRelE~~vL~~L~~  254 (345)
                      ++...+|+|.+|+||.|.+..+++.+++..+.+-+++.+..  +....    +++..    ..+-.++ +....|.... 
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~-~l~~~l~~~~-   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVR-LLEKRLENPR-   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHH-HHHhhccccc-
Confidence            46789999999999999999999999999999999877643  22211    11111    0111222 2222222221 


Q ss_pred             CCCEEEEcCCCCCcccCcHH-HHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccc
Q 019172          255 HVRAVVATLGGQQGAAARAD-KWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYF  313 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~-~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~  313 (345)
                      ..+..+-.|-     +-+-. ...++.    -..||-|++|.+.. ..|+.-+..|.=+...|+
T Consensus        92 ~~~~~ildg~-----Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L-~~ri~~r~ihp~sG~~Yh  149 (235)
T KOG3078|consen   92 CQKGFILDGF-----PRTVQQAEELLDRIAQIDLVINLKVPEEVL-VDRITGRRIHPASGRVYH  149 (235)
T ss_pred             cccccccCCC-----CcchHHHHHHHHccCCcceEEEecCCHHHH-HHHHhcccccCcccceec
Confidence            1122332221     22221 222232    26799999999987 788888888887666665

>cd04177 RSR1 RSR1 subgroup

Probab=95.78  E-value=0.0071  Score=51.99  Aligned_cols=62  Identities=6%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchh--------hhhhccChHHHHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID--------SWMLAEGSDSVVNGECDVLE  250 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~--------ei~~~~Gee~FRelE~~vL~  250 (345)
                      .+|+|+|.+|+||||+...++..--..-.+  .-+.......+.        ++++..|.+.|+.+....++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   71 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIK   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHh
Confidence            469999999999999999987443222111  111111111111        45677888888776655544

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.77  E-value=0.013  Score=60.69  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +..++|.|++|+||||+|+.+|+.+++
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            445899999999999999999999986

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.75  E-value=0.038  Score=56.15  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~l  220 (345)
                      .+..|+++|+.|+||||.+..||..+.         ..++++|.+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~  217 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY  217 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence            356799999999999999999998763         558999986

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.73  E-value=0.0091  Score=54.06  Aligned_cols=26  Identities=27%  Similarity=0.216  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.71  E-value=0.022  Score=57.67  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l  220 (345)
                      ++..|.|+|++|+||||+...||..+    |   ..++.+|.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            46789999999999999999999753    3   357888886

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.71  E-value=0.0088  Score=57.54  Aligned_cols=37  Identities=30%  Similarity=0.246  Sum_probs=28.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh----CCceeeCcHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKEL  220 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L----g~~fID~D~l  220 (345)
                      -.|..+-|+|.+||||||+++.||-..    |--.+|+..+
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~   71 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL   71 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence            368899999999999999999998544    3445565433

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.71  E-value=0.016  Score=55.43  Aligned_cols=30  Identities=17%  Similarity=0.078  Sum_probs=25.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      .++|.|++|+||||+++.+++.++.+++..
T Consensus        45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i   74 (316)
T PHA02544         45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFV   74 (316)
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence            344489999999999999999998776654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.70  E-value=0.0096  Score=52.95  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.70  E-value=0.0099  Score=49.39  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=27.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE  222 (345)
                      ++|+|++|+||||++..++..+.     ..|++.+....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence            67899999999999999988874     55677765543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.69  E-value=0.02  Score=59.73  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l  220 (345)
                      ++..|.|+|+.|+||||....||..+    |   .-+++.|.+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            35678899999999999999999766    2   457888885

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=95.69  E-value=0.047  Score=43.66  Aligned_cols=85  Identities=15%  Similarity=0.291  Sum_probs=64.5

Q ss_pred             ceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccc
Q 019172           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK  159 (345)
Q Consensus        80 ~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~  159 (345)
                      +|+|.|+.+.|-+.|..++.+   ..++.|.+...++.|.+.-.....-.++ -.||..|.|.++.|.+....+.+.++|
T Consensus         2 R~dW~Qs~~~V~ItI~~k~~~---~~~~~v~~~~~~l~v~~~~~~~~~y~~~-l~L~~~I~~~~s~~~v~~~kvei~L~K   77 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAKNSN---PELSVVEANSTVLTIHIVFEGNKEFQLD-IELWGVIDVEKSSVNMLPTKVEIKLRK   77 (87)
T ss_pred             CccEeeCCCEEEEEEEECcCC---ccceEEEecCCEEEEEEECCCCceEEEE-eeccceEChhHcEEEecCcEEEEEEEe
Confidence            699999999999999887633   4577888777787776543332222333 479999999999999999999999999


Q ss_pred             cCCCCCcchh
Q 019172          160 QDPELKWPDI  169 (345)
Q Consensus       160 ~~~~~~~~~~  169 (345)
                      .... .||..
T Consensus        78 ~~~~-~W~~L   86 (87)
T cd06488          78 AEPG-SWAKL   86 (87)
T ss_pred             CCCC-cCccC
Confidence            7754 67653

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.069  Score=53.57  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc--------------------hhhhh-----hcc-Ch
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT--------------------IDSWM-----LAE-GS  238 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s--------------------I~ei~-----~~~-Ge  238 (345)
                      +.|+|.|+||.|||-+|+++|..-+-+|+..  -+++.+-+|.+                    |+++-     ..+ -.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs  246 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES  246 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch
Confidence            3599999999999999999999999999865  44544333322                    23331     112 23


Q ss_pred             HHHHHHHHHHHHHHhc---CCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChh
Q 019172          239 DSVVNGECDVLESLSS---HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       239 e~FRelE~~vL~~L~~---~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      ++-|++-++.|-++.-   ....|+..|+-.--.++....|..  ...-||+-.|++
T Consensus       247 easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR--FekRIYIPLPe~  301 (439)
T KOG0739|consen  247 EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR--FEKRIYIPLPEA  301 (439)
T ss_pred             HHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH--hhcceeccCCcH
Confidence            5678888888877753   234677777642111233322222  245678877766

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=95.69  E-value=0.0087  Score=54.53  Aligned_cols=32  Identities=16%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC-CceeeCcHH
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG-YTPLSTKEL  220 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg-~~fID~D~l  220 (345)
                      |+=|+..||||||+|..|+..+| |..+-.|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            44489999999999999999999 999999995

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.013  Score=64.14  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK  226 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g  226 (345)
                      ++.++|+|+||+|||-+||++|-.-|.||+.+  -+++|-..|
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g  386 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG  386 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence            57899999999999999999999999999876  344444333

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.67  E-value=0.0099  Score=53.78  Aligned_cols=26  Identities=23%  Similarity=0.087  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999998765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.66  E-value=0.011  Score=63.94  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLE  222 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE  222 (345)
                      +++++|++|+|||++|+.||+.++.+++  |+.++.+
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~  522 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME  522 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence            5789999999999999999999997765  4545544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.66  E-value=0.01  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.66  E-value=0.009  Score=53.01  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ++|+|||..|||||||.+.|-.
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            5799999999999999998854

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.65  E-value=0.0095  Score=56.65  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=27.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      -++|+|+.|+|||.+|-.||+++|.+.|..|.+
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri   35 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRI   35 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence            467899999999999999999999999999986

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.65  E-value=0.01  Score=53.47  Aligned_cols=26  Identities=15%  Similarity=0.058  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.65  E-value=0.01  Score=54.57  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.65  E-value=0.015  Score=57.68  Aligned_cols=28  Identities=21%  Similarity=0.157  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..++|.|++|+||||+|+.+|+.+.+.
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            3457899999999999999999999853

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.65  E-value=0.01  Score=53.39  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999999765

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.64  E-value=0.012  Score=52.78  Aligned_cols=27  Identities=11%  Similarity=0.110  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+.+|+|+|++||||||+.+.|+..+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            478999999999999999999988764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.62  E-value=0.011  Score=53.44  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.62  E-value=0.011  Score=53.47  Aligned_cols=26  Identities=19%  Similarity=0.018  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05642 DNA replication initiation factor; Validated

Probab=95.61  E-value=0.034  Score=51.96  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh-----hCCceeeCcHHHHHHH-------cCc---hhhhhhccChHHHHHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLETFA-------KQT---IDSWMLAEGSDSVVNGECDVLES  251 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~-----Lg~~fID~D~lIE~~~-------g~s---I~ei~~~~Gee~FRelE~~vL~~  251 (345)
                      ..++|.|.+|+|||.+++.++..     ....|++++++.....       +..   ++++-...|.+.+.+.=..++..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~  125 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR  125 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence            57899999999999999998753     4567899888764311       111   33332223333333322334444


Q ss_pred             HhcCCC-EEEEcCCCCCccc-CcHHHHHHHhcCcEEEEEcChh
Q 019172          252 LSSHVR-AVVATLGGQQGAA-ARADKWQHLYAGFTVWLSQTEA  292 (345)
Q Consensus       252 L~~~~~-~VIAtGGG~~~av-lr~~~r~~L~~G~VV~Ld~s~a  292 (345)
                      +...+. .|+++........ ..++-+..+..|.++=|+.+..
T Consensus       126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~  168 (234)
T PRK05642        126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD  168 (234)
T ss_pred             HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence            443333 4444332211111 1344444444677777777554

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.61  E-value=0.019  Score=54.10  Aligned_cols=33  Identities=12%  Similarity=-0.058  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      +..++|.|.+|+||||+|+.|+.  ..-+++.|.-
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~   44 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS   44 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence            46799999999999999999972  3556666663

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.017  Score=58.60  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=37.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~  227 (345)
                      .++.++|-|+||.|||-+||++|...+..||-.  -+++.++.|.
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE  228 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE  228 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence            478899999999999999999999999999875  5666666663

>PRK14974 cell division protein FtsY; Provisional

Probab=95.59  E-value=0.077  Score=52.93  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      +..|+++|++|+||||+...||..|   |  ..++++|.+
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            4678999999999999777777654   3  446888854

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.57  E-value=0.059  Score=53.99  Aligned_cols=37  Identities=8%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-----C--CceeeCcHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLET  223 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-----g--~~fID~D~lIE~  223 (345)
                      ..++|.|++|+|||++++.++..+     +  .-|+.++++..+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            468999999999999999999876     3  447777776543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.56  E-value=0.042  Score=54.57  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=33.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~  225 (345)
                      ..+++|.|++|+|||.++..+|..+     ...|+++++++....
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~  227 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR  227 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence            4889999999999999999999876     356788888876543

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.03  Score=60.24  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~  227 (345)
                      +..|+|.|+||||||-+||++|..-|.-||..  -+++.++.|.
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE  588 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE  588 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence            56899999999999999999999999999876  5666666553

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.55  E-value=0.012  Score=52.98  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.54  E-value=0.012  Score=54.02  Aligned_cols=27  Identities=19%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            357889999999999999999998655

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.52  E-value=0.011  Score=54.17  Aligned_cols=26  Identities=15%  Similarity=0.004  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            57889999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.51  E-value=0.011  Score=53.38  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            57889999999999999999998765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.51  E-value=0.012  Score=53.59  Aligned_cols=26  Identities=23%  Similarity=0.051  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999999877

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.51  E-value=0.011  Score=53.43  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998664

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.50  E-value=0.013  Score=53.41  Aligned_cols=26  Identities=19%  Similarity=0.150  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.50  E-value=0.012  Score=53.45  Aligned_cols=26  Identities=23%  Similarity=0.070  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.49  E-value=0.012  Score=54.02  Aligned_cols=27  Identities=11%  Similarity=0.063  Sum_probs=23.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            357889999999999999999998665

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.48  E-value=0.013  Score=53.17  Aligned_cols=26  Identities=23%  Similarity=0.128  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.48  E-value=0.013  Score=52.46  Aligned_cols=26  Identities=15%  Similarity=0.164  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999999765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.48  E-value=0.013  Score=53.72  Aligned_cols=26  Identities=15%  Similarity=0.036  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999776

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=95.47  E-value=0.025  Score=55.10  Aligned_cols=49  Identities=27%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             HhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCcee-eCcHHHH
Q 019172          170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLE  222 (345)
Q Consensus       170 ~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-D~D~lIE  222 (345)
                      ...|..+..    ...+.-|+|=|.+|.||||+|..||.+||.+.+ .+|.+-|
T Consensus        77 Y~lwR~ir~----~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          77 YLLWRRIRK----MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             HHHHHHHhc----cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            345655442    334556666789999999999999999998765 5555433

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.46  E-value=0.013  Score=52.76  Aligned_cols=26  Identities=19%  Similarity=0.054  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.46  E-value=0.037  Score=54.45  Aligned_cols=26  Identities=8%  Similarity=0.132  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+++|.|++|+|||++.+.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999876

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.45  E-value=0.013  Score=53.03  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=95.44  E-value=0.015  Score=63.80  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ++..|+|+|++|+||||+++.+|+.++.+|+..
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            567899999999999999999999999998644

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.43  E-value=0.013  Score=52.63  Aligned_cols=26  Identities=27%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK12377 putative replication protein; Provisional

Probab=95.43  E-value=0.065  Score=51.20  Aligned_cols=39  Identities=10%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC---C--ceeeCcHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELLETF  224 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---~--~fID~D~lIE~~  224 (345)
                      ..+++|.|++|+|||.++..+|..+.   +  .|+...+++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            46899999999999999999998873   3  477777777643

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.42  E-value=0.013  Score=53.73  Aligned_cols=27  Identities=15%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999998763

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.41  E-value=0.014  Score=51.37  Aligned_cols=26  Identities=19%  Similarity=0.068  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.41  E-value=0.015  Score=55.54  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++|.|++|+||||+++.+|+.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999999884

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.40  E-value=0.014  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.138  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999665

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.40  E-value=0.014  Score=53.20  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            57889999999999999999999765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.39  E-value=0.014  Score=53.82  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998654

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.38  E-value=0.015  Score=51.47  Aligned_cols=26  Identities=19%  Similarity=0.079  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.37  E-value=0.015  Score=52.15  Aligned_cols=26  Identities=8%  Similarity=0.024  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|.+||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47789999999999999999998875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.37  E-value=0.014  Score=54.31  Aligned_cols=28  Identities=18%  Similarity=0.064  Sum_probs=24.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..|..|.|+|++||||||+-|++|....
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhccC
Confidence            3578899999999999999999997653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.35  E-value=0.015  Score=53.17  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.34  E-value=0.021  Score=59.83  Aligned_cols=29  Identities=14%  Similarity=0.074  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      ...++|.|++|+||||+|+.+|+.|++..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            45799999999999999999999998853

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.33  E-value=0.015  Score=52.78  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999999665

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR00368 Mg chelatase-related protein

Probab=95.32  E-value=0.0059  Score=63.76  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE  222 (345)
                      ...+.+++|+|++|+||||+++.++..+  +..+.++.++
T Consensus       208 a~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le  245 (499)
T TIGR00368       208 AAGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIE  245 (499)
T ss_pred             ccCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEe
Confidence            3467899999999999999999998875  4445555544

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.31  E-value=0.018  Score=46.43  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|+++|.+|+||||+-+.|+..-.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCC
Confidence            589999999999999998876643

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=95.30  E-value=0.052  Score=59.70  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=29.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~  219 (345)
                      ...+++|+|++|+|||++++.||+.+          +++++.+|-
T Consensus       199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~  243 (821)
T CHL00095        199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI  243 (821)
T ss_pred             ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence            45689999999999999999999987          366766663

>CHL00206 ycf2 Ycf2; Provisional

Probab=95.30  E-value=0.015  Score=68.89  Aligned_cols=38  Identities=13%  Similarity=0.161  Sum_probs=33.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE  222 (345)
                      .++.|.|+|++|+|||.+||+||...++||+.+  .++++
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            467899999999999999999999999998765  45554

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.29  E-value=0.016  Score=52.14  Aligned_cols=26  Identities=12%  Similarity=0.005  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.29  E-value=0.014  Score=52.49  Aligned_cols=29  Identities=31%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~  217 (345)
                      |+|+|.+|||||++|..+|...+  .-|+++
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            68899999999999999998866  345544

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.29  E-value=0.016  Score=52.41  Aligned_cols=26  Identities=23%  Similarity=0.072  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.29  E-value=0.016  Score=53.49  Aligned_cols=26  Identities=19%  Similarity=0.081  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.28  E-value=0.016  Score=53.34  Aligned_cols=26  Identities=15%  Similarity=0.079  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.28  E-value=0.016  Score=53.10  Aligned_cols=26  Identities=8%  Similarity=-0.164  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999998654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.27  E-value=0.016  Score=53.21  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            47789999999999999999999765

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.26  E-value=0.015  Score=63.32  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .+-.+|+|++|.||||||..+|+.-||..+|+..
T Consensus       326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA  359 (877)
T KOG1969|consen  326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA  359 (877)
T ss_pred             cceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence            4556779999999999999999999999999854

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=95.25  E-value=0.015  Score=56.94  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      -|+|+|++||||||..+.| +-+||-+||-
T Consensus         3 ~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN   31 (284)
T PF03668_consen    3 LVIITGLSGAGKSTALRAL-EDLGYYCVDN   31 (284)
T ss_pred             EEEEeCCCcCCHHHHHHHH-HhcCeeEEcC
Confidence            4788999999999999988 7788888874

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.24  E-value=0.015  Score=52.37  Aligned_cols=25  Identities=20%  Similarity=0.064  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+ .+.|+|++||||||+.+.|+-.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            36 78999999999999999999654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10867 signal recognition particle protein; Provisional

Probab=95.23  E-value=0.063  Score=55.34  Aligned_cols=35  Identities=23%  Similarity=0.108  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l  220 (345)
                      +..|+++|++|+||||++..||..|    |  .-++|+|.+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            4678899999999999887777755    3  457999954

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.22  E-value=0.017  Score=53.43  Aligned_cols=26  Identities=12%  Similarity=0.115  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998664

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.21  E-value=0.017  Score=54.34  Aligned_cols=26  Identities=15%  Similarity=0.077  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999664

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.21  E-value=0.028  Score=60.90  Aligned_cols=28  Identities=18%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      ...++|.|++|+||||+|+.||+.|++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999874

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=95.20  E-value=0.018  Score=53.55  Aligned_cols=26  Identities=15%  Similarity=-0.051  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999999654

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=0.038  Score=58.74  Aligned_cols=64  Identities=14%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEE
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VI  260 (345)
                      ++.|+|+|+||.|||-+||++|-.-|.||+-+-       |-..+|.+-.-|....|++-.++    .+...|||
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s-------GSEFdEm~VGvGArRVRdLF~aA----k~~APcII  400 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS-------GSEFDEMFVGVGARRVRDLFAAA----KARAPCII  400 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEecc-------ccchhhhhhcccHHHHHHHHHHH----HhcCCeEE
Confidence            468999999999999999999999999998752       22334444555666666654443    33445665

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.18  E-value=0.018  Score=53.41  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=95.18  E-value=0.09  Score=53.91  Aligned_cols=38  Identities=8%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~lIE~~  224 (345)
                      ..++|.|++|+|||++++.+|..+       ..-|++.++++.+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~  175 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            469999999999999999999875       35677887765543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.17  E-value=0.018  Score=51.67  Aligned_cols=25  Identities=28%  Similarity=0.186  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+..+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=95.16  E-value=0.018  Score=53.01  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.15  E-value=0.02  Score=50.65  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=95.14  E-value=0.019  Score=51.43  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998765

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=95.13  E-value=0.018  Score=58.65  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      ....|+|+|+-.|||||++.+||.++.     +.+||+|-
T Consensus        72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv  111 (398)
T COG1341          72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV  111 (398)
T ss_pred             CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence            456899999999999999999999886     68899985

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.13  E-value=0.018  Score=52.05  Aligned_cols=26  Identities=27%  Similarity=0.211  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            57889999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.13  E-value=0.023  Score=55.39  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE  222 (345)
                      .+.+|+|+|.+||||||+.+.|...+     +...+-.++-.|
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E  173 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE  173 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence            46799999999999999999999887     344555555555

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=95.12  E-value=0.019  Score=53.87  Aligned_cols=26  Identities=12%  Similarity=0.017  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999765

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.12  E-value=0.02  Score=52.61  Aligned_cols=26  Identities=15%  Similarity=0.069  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999998654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=95.11  E-value=0.019  Score=52.90  Aligned_cols=26  Identities=12%  Similarity=0.045  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.||-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.11  E-value=0.019  Score=53.20  Aligned_cols=26  Identities=15%  Similarity=0.052  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.||-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999765

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=95.11  E-value=0.047  Score=39.93  Aligned_cols=73  Identities=18%  Similarity=0.316  Sum_probs=56.1

Q ss_pred             EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCC------ccceeeeccccccccCCCceeeecccceeeh
Q 019172           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS------FITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~------~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      |.|+.+++.+++.+|+..   ..++.|++.+.++.|+......      .....-.-.|+..+.|.++.|.+++..+.+.
T Consensus         1 ~~q~~~~v~i~i~~~~~~---~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~   77 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVK---KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEIT   77 (80)
T ss_pred             CEEcCCEEEEEEECCCCC---HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEE
Confidence            678889999999999933   6789999889999998876521      1222333558999999999999998887776


Q ss_pred             cc
Q 019172          157 LK  158 (345)
Q Consensus       157 ~k  158 (345)
                      ++
T Consensus        78 l~   79 (80)
T cd00298          78 LP   79 (80)
T ss_pred             Ec
Confidence            54

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.10  E-value=0.018  Score=53.45  Aligned_cols=26  Identities=15%  Similarity=0.004  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999999764

>PRK10908 cell division protein FtsE; Provisional

Probab=95.10  E-value=0.02  Score=52.16  Aligned_cols=26  Identities=19%  Similarity=0.118  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998665

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=95.09  E-value=0.019  Score=52.64  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.09  E-value=0.02  Score=53.13  Aligned_cols=26  Identities=12%  Similarity=-0.011  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999644

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.09  E-value=0.02  Score=52.17  Aligned_cols=27  Identities=15%  Similarity=0.094  Sum_probs=24.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|..+.|+|++||||||+.+.||-.+
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            357789999999999999999999765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.08  E-value=0.019  Score=53.32  Aligned_cols=26  Identities=19%  Similarity=0.158  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.08  E-value=0.018  Score=52.23  Aligned_cols=28  Identities=14%  Similarity=0.141  Sum_probs=24.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+..+.|+|++||||||+.+.|+-.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            3578899999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.07  E-value=0.021  Score=62.27  Aligned_cols=35  Identities=17%  Similarity=-0.007  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      ..+++|.|++|+||||+|+.+|..++..|+..+..
T Consensus        52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            45899999999999999999999999998887764

>PLN03025 replication factor C subunit; Provisional

Probab=95.07  E-value=0.023  Score=55.14  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+++|.|++|+||||+++.+|+.+
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999998

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.06  E-value=0.022  Score=53.31  Aligned_cols=26  Identities=12%  Similarity=0.095  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999999765

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.06  E-value=0.021  Score=50.77  Aligned_cols=27  Identities=15%  Similarity=-0.039  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            577899999999999999999997753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.06  E-value=0.021  Score=51.33  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998765

>PF13479 AAA_24: AAA domain

Probab=95.05  E-value=0.031  Score=51.32  Aligned_cols=32  Identities=16%  Similarity=0.081  Sum_probs=26.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      +.+++|.|++|+||||+|..+   =+.-|||+|.=
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g   34 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL---PKPLFIDTENG   34 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCC
Confidence            568999999999999999988   33447888775

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.05  E-value=0.017  Score=62.00  Aligned_cols=35  Identities=9%  Similarity=-0.034  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lI  221 (345)
                      .-|.|.|++||||||+++.|+..+ +...|.+|++.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            457789999999999999999998 45688888874

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=95.05  E-value=0.019  Score=53.78  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE  222 (345)
                      .+.+|+|+|++|+|||++|+.++..  +|-++.++.+|
T Consensus        21 G~h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e~le   56 (206)
T PF01078_consen   21 GGHHLLLIGPPGTGKTMLARRLPSL--LPPLTEEEALE   56 (206)
T ss_dssp             CC--EEEES-CCCTHHHHHHHHHHC--S--CCEECCES
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHh--CCCCchHHHhh
Confidence            5789999999999999999999977  55555555443

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=95.05  E-value=0.02  Score=52.60  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            578899999999999999999997653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PLN02796 D-glycerate 3-kinase

Probab=95.05  E-value=0.037  Score=55.63  Aligned_cols=35  Identities=11%  Similarity=0.061  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI  221 (345)
                      .-|.|+|.+||||||+++.|+..+.     ...|..|++.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            3488899999999999999999985     3456777764

>PRK13768 GTPase; Provisional

Probab=95.04  E-value=0.024  Score=53.77  Aligned_cols=34  Identities=12%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +.|+++|+.|+||||++..++..+.     .-.+|.|.-
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~   41 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA   41 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence            5689999999999999988887773     337788754

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.04  E-value=0.14  Score=52.54  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=64.6

Q ss_pred             hhHhhHHHHHHhhhhh---cCCceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHH----HHHHH--c--Cch
Q 019172          168 DIVESWESLTAGSMQL---LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL----LETFA--K--QTI  229 (345)
Q Consensus       168 ~~~~~~~~l~a~~~~~---l~~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~l----IE~~~--g--~sI  229 (345)
                      ...+.|..+.....+.   .+++.|.|+||.|.||||--..||.++.       ..+|-+|.+    +||.-  +  |.+
T Consensus       182 ~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v  261 (407)
T COG1419         182 YFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV  261 (407)
T ss_pred             hHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence            3345565555544444   3578899999999999876555555555       789999998    34432  1  222


Q ss_pred             hhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChh
Q 019172          230 DSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEA  292 (345)
Q Consensus       230 ~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a  292 (345)
                      +-.+.. .   ..+++. ++..+...+-+.|.|-|-.   ...+.+...|+      ...-+||..+..
T Consensus       262 p~~vv~-~---~~el~~-ai~~l~~~d~ILVDTaGrs---~~D~~~i~el~~~~~~~~~i~~~Lvlsat  322 (407)
T COG1419         262 PLEVVY-S---PKELAE-AIEALRDCDVILVDTAGRS---QYDKEKIEELKELIDVSHSIEVYLVLSAT  322 (407)
T ss_pred             ceEEec-C---HHHHHH-HHHHhhcCCEEEEeCCCCC---ccCHHHHHHHHHHHhccccceEEEEEecC
Confidence            211111 1   233332 2334444333444565532   45555555554      135677777654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.03  E-value=0.021  Score=52.75  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.03  E-value=0.029  Score=54.84  Aligned_cols=106  Identities=11%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC-------ceeeCcHHH------HHHH---cCchhhhhhccChHHHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKELL------ETFA---KQTIDSWMLAEGSDSVVNGECDVL  249 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~-------~fID~D~lI------E~~~---g~sI~ei~~~~Gee~FRelE~~vL  249 (345)
                      +.-|.|.|.+|+||||+++.|+..+..       ..|-+|-++      ++..   .+..++   .++-..|.+.-+++-
T Consensus        82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe---SyD~~~ll~fl~~vK  158 (283)
T COG1072          82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE---SYDVAALLRFLSDVK  158 (283)
T ss_pred             CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc---cccHHHHHHHHHHHh
Confidence            346888999999999999999998873       334455543      2211   011111   122223333222221


Q ss_pred             HH----------------------HhcCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhhchhh
Q 019172          250 ES----------------------LSSHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       250 ~~----------------------L~~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~~~~R  298 (345)
                      +.                      +....+.||.=|--+   ..+++.|..+.  .++.||+|++.+.+ ..|
T Consensus       159 ~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nv---Lq~~~p~~~~sdffDfSIyvDa~~~~l-e~w  227 (283)
T COG1072         159 AGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNV---LQDGEPWLFLSDFFDFSIYVDADEELL-EER  227 (283)
T ss_pred             cCCCccccccccccccccCCCceeecCCCCEEEEechhh---hcCCCccccccccceEEEEecCCHHHH-HHH
Confidence            10                      111234677777652   45555666665  47899999999866 444

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.03  E-value=0.024  Score=59.22  Aligned_cols=27  Identities=15%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +..++|.|++|+||||+++.+|+.+.+
T Consensus        36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         36 GHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            345689999999999999999999975

>cd04155 Arl3 Arl3 subfamily

Probab=95.03  E-value=0.029  Score=47.97  Aligned_cols=27  Identities=15%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+...|.|+|++|+||||+.+.+...
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            344678999999999999999999764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.02  E-value=0.02  Score=54.62  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh----hCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG----LGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~----Lg~~fID~D  218 (345)
                      +|..++|||++||||||+-|.|...    -|--.+|++
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~   64 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE   64 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence            5788999999999999999988642    234456663

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.02  E-value=0.022  Score=50.06  Aligned_cols=27  Identities=19%  Similarity=0.142  Sum_probs=23.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            357889999999999999999998765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.02  E-value=0.021  Score=53.06  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999876

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=95.01  E-value=0.066  Score=49.33  Aligned_cols=29  Identities=21%  Similarity=0.132  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .++-|++|||+|+||-||-.++...|.-.
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~   32 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGR   32 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccC
Confidence            36779999999999999999998888644

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.01  E-value=0.021  Score=52.90  Aligned_cols=26  Identities=19%  Similarity=0.033  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999665

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=95.01  E-value=0.021  Score=52.28  Aligned_cols=28  Identities=11%  Similarity=0.131  Sum_probs=24.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+..+.|+|++||||||+.+.|+-.+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            3578899999999999999999997654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.01  E-value=0.031  Score=58.49  Aligned_cols=28  Identities=29%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      ...++|.|++|.||||+|+.+|+.|++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            4679999999999999999999999764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=95.00  E-value=0.022  Score=52.55  Aligned_cols=26  Identities=19%  Similarity=0.082  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998665

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.99  E-value=0.02  Score=57.27  Aligned_cols=26  Identities=19%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|.-++|+|++||||||+-+++|-..
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35679999999999999999999543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.99  E-value=0.022  Score=51.85  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=94.99  E-value=0.022  Score=52.05  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57789999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=94.98  E-value=0.023  Score=51.31  Aligned_cols=27  Identities=19%  Similarity=0.027  Sum_probs=24.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+..+
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999998765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=94.98  E-value=0.024  Score=49.95  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++|+||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57889999999999999999999765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.98  E-value=0.022  Score=52.93  Aligned_cols=26  Identities=15%  Similarity=0.047  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.97  E-value=0.063  Score=58.47  Aligned_cols=103  Identities=14%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC------------CceeeCcHHHHHH---------HcCchhhhhhcc-----Ch
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG------------YTPLSTKELLETF---------AKQTIDSWMLAE-----GS  238 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg------------~~fID~D~lIE~~---------~g~sI~ei~~~~-----Ge  238 (345)
                      .|..|.|+|.+||||||++|.|...+.            +.-+|.+.+.++.         ..-++.|=+...     .|
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e  577 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE  577 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHH
Confidence            578999999999999999999987654            1222223322221         112444433221     12


Q ss_pred             HHHHHHHH----HHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh-------cCcEEEEEcCh
Q 019172          239 DSVVNGEC----DVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-------AGFTVWLSQTE  291 (345)
Q Consensus       239 e~FRelE~----~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-------~G~VV~Ld~s~  291 (345)
                      +..+.+..    +.++++..+-+..|.-+|+    -+...-|+.|.       +-.++.||-+.
T Consensus       578 ~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~----~LSGGQrQrlalARaLl~~P~ILlLDEaT  637 (709)
T COG2274         578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGA----NLSGGQRQRLALARALLSKPKILLLDEAT  637 (709)
T ss_pred             HHHHHHHHhCcHHHHHhcccccccccccCCC----CCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence            33333322    3345555556788877764    57777777553       35688888764

>cd01394 radB RadB

Probab=94.97  E-value=0.026  Score=51.19  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL  220 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l  220 (345)
                      ...+..+.|.|.+|+||||++..+|...     ..-|+|+|..
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~   58 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL   58 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence            4457788999999999999999998765     2448988753

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.96  E-value=0.024  Score=49.74  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++|+||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.95  E-value=0.022  Score=51.83  Aligned_cols=24  Identities=4%  Similarity=0.072  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|+|+|++||||||+.+.|+..+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            378999999999999999888775

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=94.95  E-value=0.023  Score=53.13  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++|+||||+.+.|+-.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999875

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.94  E-value=0.023  Score=52.17  Aligned_cols=26  Identities=27%  Similarity=0.184  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999765

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=94.94  E-value=0.022  Score=53.82  Aligned_cols=26  Identities=12%  Similarity=0.109  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47789999999999999999999765

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.93  E-value=0.024  Score=52.73  Aligned_cols=26  Identities=12%  Similarity=-0.100  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.||-.+
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57789999999999999999999664

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=94.93  E-value=0.024  Score=51.36  Aligned_cols=27  Identities=15%  Similarity=0.092  Sum_probs=23.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            357889999999999999999998664

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.92  E-value=0.021  Score=53.76  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            57889999999999999999999664

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.92  E-value=0.023  Score=52.78  Aligned_cols=26  Identities=12%  Similarity=0.031  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57889999999999999999999875

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.92  E-value=0.024  Score=52.57  Aligned_cols=26  Identities=15%  Similarity=-0.072  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999998654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=94.92  E-value=0.023  Score=52.20  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=94.91  E-value=0.023  Score=53.07  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999765

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=94.91  E-value=0.024  Score=52.07  Aligned_cols=27  Identities=15%  Similarity=0.067  Sum_probs=24.1

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            357889999999999999999999665

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.91  E-value=0.021  Score=55.49  Aligned_cols=35  Identities=17%  Similarity=0.082  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~  219 (345)
                      ++..+-|+|-+||||||+||.+...+.    --++++++
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~   76 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD   76 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence            578899999999999999999988765    44566554

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.91  E-value=0.025  Score=51.30  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999865

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=94.90  E-value=0.025  Score=51.59  Aligned_cols=27  Identities=26%  Similarity=0.108  Sum_probs=24.1

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+-.+
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            357889999999999999999999765

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.90  E-value=0.024  Score=53.04  Aligned_cols=26  Identities=15%  Similarity=-0.009  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.||-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999754

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.89  E-value=0.025  Score=50.86  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=24.1

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.+..+.|+|++||||||+.+.++-.+
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            357889999999999999999998765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.89  E-value=0.024  Score=51.35  Aligned_cols=27  Identities=15%  Similarity=0.105  Sum_probs=24.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.+..+.|+|++||||||+.+.|+-.+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999999998765

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.89  E-value=0.022  Score=55.01  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lI  221 (345)
                      ++.-+.|+|+.||||||+-|.|+..|.    --++|+.++.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~   67 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA   67 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence            578899999999999999999999765    4677776653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.89  E-value=0.024  Score=53.37  Aligned_cols=26  Identities=15%  Similarity=-0.019  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.||-.+
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57889999999999999999998753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.88  E-value=0.024  Score=52.54  Aligned_cols=25  Identities=12%  Similarity=0.038  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            5788999999999999999999864

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=94.88  E-value=0.024  Score=53.37  Aligned_cols=26  Identities=19%  Similarity=0.046  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.88  E-value=0.025  Score=51.51  Aligned_cols=27  Identities=19%  Similarity=0.160  Sum_probs=24.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+..+
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999999775

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.88  E-value=0.025  Score=52.51  Aligned_cols=26  Identities=15%  Similarity=-0.089  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|.+||||||+.+.|+-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            57789999999999999999999665

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.88  E-value=0.024  Score=58.38  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +..|.|+|+.|+||||++..||..|.     ..++++|.+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~  280 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  280 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence            46899999999999999999997763     558899976

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.87  E-value=0.026  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++..+.|+|++|+||||+.+.|+-.+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.87  E-value=0.027  Score=49.57  Aligned_cols=28  Identities=18%  Similarity=0.099  Sum_probs=24.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+..+.|+|++|+||||+.+.|+-.+.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3578899999999999999999987753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.87  E-value=0.025  Score=52.56  Aligned_cols=26  Identities=15%  Similarity=-0.041  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999998754

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.87  E-value=0.025  Score=51.03  Aligned_cols=26  Identities=15%  Similarity=0.026  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999764

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.02  Score=57.68  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      +-|.|-||||.|||++.|+||+.|.....|.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~  208 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDR  208 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence            4588899999999999999999999775543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=94.85  E-value=0.026  Score=51.17  Aligned_cols=27  Identities=19%  Similarity=0.180  Sum_probs=23.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.||-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            357889999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=94.85  E-value=0.025  Score=53.60  Aligned_cols=26  Identities=23%  Similarity=0.042  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999999765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.85  E-value=0.025  Score=52.52  Aligned_cols=25  Identities=8%  Similarity=-0.019  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .|..+.|+|++||||||+.+.||-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhh
Confidence            5788999999999999999999864

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=94.84  E-value=0.025  Score=52.35  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            57889999999999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.84  E-value=0.025  Score=54.49  Aligned_cols=27  Identities=19%  Similarity=0.043  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|.-+.|+|++||||||+-+.+|-...
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467799999999999999999986543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.83  E-value=0.021  Score=58.75  Aligned_cols=28  Identities=18%  Similarity=0.185  Sum_probs=24.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      -+|..+.|+|++||||||+.+.|+..+.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3689999999999999999999987663

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.82  E-value=0.025  Score=52.59  Aligned_cols=26  Identities=15%  Similarity=-0.036  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.81  E-value=0.039  Score=55.57  Aligned_cols=28  Identities=14%  Similarity=0.100  Sum_probs=25.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..+++.|++|+||||+|+.+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3458899999999999999999999884

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.80  E-value=0.027  Score=52.49  Aligned_cols=26  Identities=19%  Similarity=0.017  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999765

>PRK04296 thymidine kinase; Provisional

Probab=94.78  E-value=0.025  Score=51.14  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++-++++|+||+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999998877

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=94.78  E-value=0.028  Score=51.17  Aligned_cols=26  Identities=12%  Similarity=-0.070  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..-|.|+|++||||||+.+.|...|.
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh
Confidence            34578899999999999999998875

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.78  E-value=0.039  Score=57.76  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..+++.|++|+||||+|+.||+.|++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         38 HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4568899999999999999999999875

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=94.78  E-value=0.026  Score=51.89  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.07  Score=58.64  Aligned_cols=43  Identities=26%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT  228 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s  228 (345)
                      ...|+|-|+||+|||-+||++|..+.+.|+..  -+++.-+.|.+
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS  749 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS  749 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence            45699999999999999999999999999986  46666555543

>PRK08116 hypothetical protein; Validated

Probab=94.77  E-value=0.16  Score=48.68  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---CC--ceeeCcHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLET  223 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~--~fID~D~lIE~  223 (345)
                      +..++|.|.+|+|||.++..+|..+   |.  -|++.++++.+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            3459999999999999999999986   43  46677776654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.76  E-value=0.025  Score=53.43  Aligned_cols=26  Identities=19%  Similarity=0.060  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            57889999999999999999998765

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=94.76  E-value=0.028  Score=51.04  Aligned_cols=26  Identities=15%  Similarity=0.219  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999999664

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.023  Score=57.51  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ..+.|.|.||+|+|||-+|+++|++.|..||..+-
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~  160 (386)
T KOG0737|consen  126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV  160 (386)
T ss_pred             CCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence            35789999999999999999999999999998753

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=94.75  E-value=0.025  Score=52.20  Aligned_cols=26  Identities=15%  Similarity=0.123  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            57889999999999999999999874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.75  E-value=0.026  Score=53.85  Aligned_cols=26  Identities=8%  Similarity=0.017  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.026  Score=55.30  Aligned_cols=26  Identities=23%  Similarity=0.139  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|..+.|+|.+||||||+++.|+..+
T Consensus        32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         32 EGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            57889999999999999999999876

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.028  Score=52.19  Aligned_cols=26  Identities=12%  Similarity=-0.081  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.74  E-value=0.027  Score=53.10  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=94.73  E-value=0.028  Score=51.43  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999998665

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=94.73  E-value=0.027  Score=53.32  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=94.73  E-value=0.025  Score=52.36  Aligned_cols=25  Identities=16%  Similarity=0.147  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .|..+.|+|++||||||+.+.|+-.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            5788999999999999999999874

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.73  E-value=0.024  Score=60.76  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++.++|+||+|+||||+|+.||+.|.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            456788999999999999999999885

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=94.73  E-value=0.029  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+|+|+|.+|+||||+...+...-
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999886543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.73  E-value=0.027  Score=53.28  Aligned_cols=26  Identities=23%  Similarity=0.128  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            57889999999999999999999764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=94.72  E-value=0.028  Score=51.77  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++|+||||+.+.|+-.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.72  E-value=0.12  Score=56.18  Aligned_cols=27  Identities=15%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ...++|.|++|.||||+++.||+.|++
T Consensus        38 pHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         38 HHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            345788999999999999999999998

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.71  E-value=0.042  Score=53.38  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+++|.|++|+|||++++.+++.+
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.70  E-value=0.027  Score=53.35  Aligned_cols=26  Identities=12%  Similarity=0.084  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999998765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.70  E-value=0.029  Score=52.98  Aligned_cols=26  Identities=19%  Similarity=0.028  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57889999999999999999999765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.69  E-value=0.029  Score=52.86  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.+|-.+
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999654

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.68  E-value=0.029  Score=49.56  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh
Q 019172          189 IFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      |.|+|++|+||||+...|...|
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999998875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.68  E-value=0.029  Score=52.43  Aligned_cols=26  Identities=23%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|.+||||||+.+.|+-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.68  E-value=0.029  Score=53.13  Aligned_cols=26  Identities=12%  Similarity=0.097  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998766

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=94.68  E-value=0.028  Score=53.16  Aligned_cols=26  Identities=23%  Similarity=0.127  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         37 SGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998654

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.67  E-value=0.031  Score=50.37  Aligned_cols=28  Identities=25%  Similarity=0.227  Sum_probs=24.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..++..+.|+|++|+||||+.+.|+-.+
T Consensus        31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          31 VKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468889999999999999999998654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd04163 Era Era subfamily

Probab=94.67  E-value=0.03  Score=46.13  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=20.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...|.++|.+|+||||+...|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999998864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.66  E-value=0.036  Score=50.38  Aligned_cols=27  Identities=7%  Similarity=-0.026  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ...+|.|+|+.||||||+-+.+++.++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999998865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=94.66  E-value=0.045  Score=55.73  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~  217 (345)
                      ..+.|+.|++.|++|+|||.+|-.+|+.||  .||+.+
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i   98 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI   98 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence            456789999999999999999999999998  666544

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.66  E-value=0.03  Score=52.00  Aligned_cols=26  Identities=15%  Similarity=-0.064  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|.+||||||+.+.||-.+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            57889999999999999999999653

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=94.65  E-value=0.03  Score=50.44  Aligned_cols=26  Identities=19%  Similarity=0.100  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999776

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=94.65  E-value=0.033  Score=61.71  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+++|+|++|+|||++++.||+.+
T Consensus       198 ~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        198 TKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CcCceEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	345
3nwj_A	250	Crystal Structure Of Shikimate Kinase From Arabidop		6e-05

>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) Length = 250

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 148 IDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELA 207
            DE+Q +  LKK+  E+K                  L G S++LVG        V   +A
Sbjct: 28  FDEEQQI--LKKKAEEVK----------------PYLNGRSMYLVGMMGSGKTTVGKIMA 69
Query: 208 VGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN-GECDVLESLSSHVRAVVATLGGQ 266
             LGYT      L+E   K T  + +     +SV    E + L+ LS     VV + GG 
Sbjct: 70  RSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGG- 128
Query: 267 QGAAARADKWQHLYAGFTVWL 287
            GA  R   W++++ G ++WL
Sbjct: 129 -GAVIRPINWKYMHKGISIWL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	2e-10
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	9e-09
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	4e-08
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	5e-08
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	4e-07
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	5e-05
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 49/342 (14%), Positives = 110/342 (32%), Gaps = 83/342 (24%)

Query: 43  FISSSLHKSTNVVPIKTHDRRRF-TCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEI 101
           F+ S +          +   R +    + L +     ++Y  S     ++LR  L  LE+
Sbjct: 93  FLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LEL 147

Query: 102 QSSKDIFVDADG----TCLTVRVNRSGSF----------ITLIETNQLFDKIKPTETIWY 147
           + +K++ +D       T + + V  S             + L   N     ++  + + Y
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 148 -IDEDQLVINLKKQDPELKWPDI----------------------VESWESLTA--GSMQ 182
            ID +    +    + +L+   I                      V++ ++  A   S +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           +L  T    V D   ++      +++      L+  E+     K               +
Sbjct: 268 ILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLK--------------YL 311

Query: 243 NGECDVL--ESLSSH--VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR 298
           +     L  E L+++    +++A     +   A  D W+H+           + +  ++ 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHV---------NCDKLTTIIE 360

Query: 299 VFVLSLHLRSVTSYFVRLEFVSSFSRTNEHIMARKPAVMKTL 340
             +  L        F RL  V  F   + HI      ++  +
Sbjct: 361 SSLNVLEPAEYRKMFDRL-SV--F-PPSAHIP---TILLSLI 395

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W +     +++NL K   E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVG-EYWWNAILEG 111

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 52.3 bits (125), Expect = 9e-09
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A+   Y ++   +E++L +          KD+ VD     L V +    + I      +L
Sbjct: 14  ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAII----DGEL 69

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 70  YNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSS 107

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 12/91 (13%), Positives = 32/91 (35%)

Query: 79  SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDK 138
           S Y +      +++ + L  +    ++++ V        + V         +  N L   
Sbjct: 21  SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKP 80

Query: 139 IKPTETIWYIDEDQLVINLKKQDPELKWPDI 169
           I    +   +  D ++I  +K+    +W  +
Sbjct: 81  ISVEGSSKKVKTDTVLILCRKKVENTRWDYL 111

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P+  ++Y +     EI ++  +       S  I +   G  + V+         +I+  
Sbjct: 1   MPS-EAKYTWDQELNEINIQFPVT--GDADSSAIKIRMVGKKICVKNQGE----IVID-G 52

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
           +L  ++  +   W I+ D + +N+ K+  E  W  ++  
Sbjct: 53  ELLHEVDVSSLWWVINGDVVDVNVTKKRNEW-WDSLLVG 90

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Length = 157

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P  T   ++     E+ + +Q+       ++DI        + + V             
Sbjct: 9   VPCGTPWGQWYQTLEEVFIEVQVP--PGTRAQDIQCGLQSRHVALAVGGREIL-----KG 61

Query: 134 QLFDKIKPTETIWYIDEDQL---VINLKKQDPELKWPDIVE 171
           +LFD     E  W +++ ++   V+   K+D    W  ++E
Sbjct: 62  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLE 102

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%)

Query: 98  SLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157
              ++ SKD+ V+ + + LT            +    LF  I P ++     +  ++  L
Sbjct: 18  EFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL 77

Query: 158 KKQDPELKWP 167
           +K +    WP
Sbjct: 78  RKGESGQSWP 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.86
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.86
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.86
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.8
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.79
1via_A	175	Shikimate kinase; structural genomics, transferase	99.79
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.76
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.74
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.51
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.47
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.43
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.4
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.39
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.39
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.39
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.38
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.35
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.35
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.31
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.31
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.3
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.29
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.29
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.28
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.27
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.27
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.26
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.25
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.24
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.22
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.19
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.19
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.18
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.18
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.18
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.15
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.12
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.11
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.11
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.11
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.1
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.1
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.09
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.07
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.07
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	99.04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.04
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.96
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.95
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.95
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.93
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.93
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.92
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.92
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.91
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.89
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.88
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	98.88
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.85
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.85
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.83
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.83
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.82
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.81
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.81
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.8
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	98.78
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	98.74
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.72
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	98.71
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.71
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	98.7
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.7
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.69
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.63
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	98.58
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.52
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.52
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.47
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.33
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.3
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.26
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.21
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.15
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.1
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.08
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.03
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.02
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.86
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.83
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.79
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.75
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	97.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.72
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.71
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.68
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.64
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.63
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.62
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.58
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.57
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.5
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.49
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.45
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.42
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.42
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.35
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.32
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.32
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.29
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	97.28
3bos_A	242	Putative DNA replication factor; P-loop containing	97.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.27
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.23
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.23
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.23
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.22
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.17
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.16
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.1
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.1
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.09
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.07
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.05
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.05
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.04
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.03
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.03
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.01
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.0
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.98
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.94
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.9
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.89
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.89
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.88
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.87
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.85
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.84
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.8
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.78
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.78
3co5_A	143	Putative two-component system transcriptional RES	96.74
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.72
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.7
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.69
3pvs_A	447	Replication-associated recombination protein A; ma	96.67
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.66
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.63
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.56
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.56
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.55
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	96.51
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.5
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.49
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.48
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.47
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.43
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.43
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.39
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.39
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.33
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.31
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.29
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.25
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.24
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.21
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.2
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.18
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.17
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.13
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.1
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.09
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.08
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.03
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.98
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.93
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.84
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.84
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.83
2qgz_A	308	Helicase loader, putative primosome component; str	95.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.71
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.71
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.62
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.6
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.57
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.56
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.55
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.54
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.53
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.51
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.51
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.5
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.5
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.48
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.46
1g6h_A	257	High-affinity branched-chain amino acid transport	95.46
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.46
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.44
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.42
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.42
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.41
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.4
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.4
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.39
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.37
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.37
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.36
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.35
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.33
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.31
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.31
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.31
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.31
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.31
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.28
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.27
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.26
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.26
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.24
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.24
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.23
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.2
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.15
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.1
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.08
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.05
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.03
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.01
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.01
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.98
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.97
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.96
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.87
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.82
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.8
2og2_A	359	Putative signal recognition particle receptor; nuc	94.78
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.76
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.75
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.74
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.7
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.7
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.68
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.65
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.62
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.62
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.61
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.6
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.6
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.59
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.57
2fna_A	357	Conserved hypothetical protein; structural genomic	94.56
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.55
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.54
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.53
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.51
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.45
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.45
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.45
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.42
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.4
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.35
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.31
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.29
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.28
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.22
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.21
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.18
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.14
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.1
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.06
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	94.02
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.02
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.01
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.99
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	93.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.94
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.92
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	93.89
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	93.89
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.87
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.85
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	93.83
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.83
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.82
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.79
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	93.79
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.78
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.77
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.76
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.74
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.73
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.73
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.72
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.69
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.67
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.65
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.62
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.62
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.61
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.58
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.57
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.55
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.53
3end_A	307	Light-independent protochlorophyllide reductase ir	93.52
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.51
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.46
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.43
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.43
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.41
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.4
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.38
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.38
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.37
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.37
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.36
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.31
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.28
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.28
2xxa_A	433	Signal recognition particle protein; protein trans	93.25
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.2
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.2
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.15
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.12
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	93.09
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.09
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.05
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.02
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.02
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.01
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.94
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.93
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.89
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.89
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.88
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.88
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	92.88
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.87
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.76
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.75
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.74
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.73
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.66
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.65
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.63
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.61
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.61
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.48
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.48
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.47
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	92.45
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.45
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.4
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	92.38
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.38
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.37
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.34
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.32
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	92.31
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.3
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.25
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.25
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.22
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	92.21
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.2
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.19
2z43_A	324	DNA repair and recombination protein RADA; archaea	92.19
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	92.18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.16
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.16
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.03
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.03
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.02
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.01
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.98
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.9
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.88
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.88
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.87
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.87
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	91.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.83
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	91.83
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	91.8
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.76
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.72
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.71
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.65
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	91.63
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.62
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.58
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.56
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	91.55
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.52
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.47
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	91.45
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	91.4
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.3
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.26
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	91.23
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	91.22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.22
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.2
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.16
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.16
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	91.14
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	91.11
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	91.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	91.09
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	90.94
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	90.88
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	90.86
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	90.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.68
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	90.66
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	90.55
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	90.41
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	90.37
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.32

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.86  E-value=6.2e-22  Score=184.50  Aligned_cols=120  Identities=26%  Similarity=0.349  Sum_probs=108.1

Q ss_pred             HHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-cCchhhhhhccChHHHHHHHHHHHHHHh
Q 019172          175 SLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLS  253 (345)
Q Consensus       175 ~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~  253 (345)
                      .+.-.+.+.+.+..|+|+|++||||||+|+.||+.||++|+|+|+++++.. |+++.++++..|++.||++|.++++++.
T Consensus        37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~  116 (250)
T 3nwj_A           37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLS  116 (250)
T ss_dssp             HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            334445556678999999999999999999999999999999999999999 9999999999999999999999999988


Q ss_pred             cC-CCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172          254 SH-VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       254 ~~-~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R  298 (345)
                      .. .+.||+||||   +++++++|+.|+.|.+|||+++.++. ..|
T Consensus       117 ~~~~~~Via~GgG---~v~~~~~~~~l~~~~vV~L~a~~e~l-~~R  158 (250)
T 3nwj_A          117 LMYHQVVVSTGGG---AVIRPINWKYMHKGISIWLDVPLEAL-AHR  158 (250)
T ss_dssp             HHCSSEEEECCGG---GGGSHHHHHHHTTSEEEEEECCHHHH-HHH
T ss_pred             hhcCCcEEecCCC---eecCHHHHHHHhCCcEEEEECCHHHH-HHH
Confidence            76 6899999998   59999999999999999999999876 455

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.86  E-value=9.5e-22  Score=169.18  Aligned_cols=109  Identities=21%  Similarity=0.231  Sum_probs=101.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      +++|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.+++...|+.+|+++|.+++.++....+.||++|||
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~   84 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGG   84 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999998778899999998


Q ss_pred             CCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          266 QQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                         +++.+++++.|+ .|.+|||++|.++. ..|
T Consensus        85 ---~~~~~~~~~~l~~~~~vi~L~~~~e~l-~~R  114 (185)
T 3trf_A           85 ---VVLDEKNRQQISETGVVIYLTASIDTQ-LKR  114 (185)
T ss_dssp             ---GGGSHHHHHHHHHHEEEEEEECCHHHH-HHH
T ss_pred             ---eecCHHHHHHHHhCCcEEEEECCHHHH-HHH
Confidence               589999999997 68999999998865 555

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.2e-21  Score=172.47  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=101.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      .++.|+|+|++||||||+|+.||+.||++++|+|+++++..|+++.+++...|+.+|+++|.++++.+....++||++||
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~gg  103 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGG  103 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      |   .+..+++++.|. .+.+|||++|.++. ..|
T Consensus       104 g---~~~~~~~~~~l~~~~~vi~L~~~~e~l-~~R  134 (199)
T 3vaa_A          104 G---APCFYDNMEFMNRTGKTVFLNVHPDVL-FRR  134 (199)
T ss_dssp             T---GGGSTTHHHHHHHHSEEEEEECCHHHH-HHH
T ss_pred             c---EEccHHHHHHHHcCCEEEEEECCHHHH-HHH
Confidence            8   488999999886 69999999999876 445

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.80  E-value=1.3e-19  Score=154.19  Aligned_cols=105  Identities=20%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE-EEEcCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA-VVATLG  264 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~-VIAtGG  264 (345)
                      -.+|+|+|++||||||+|+.||+.||++++|+|+++++..|+++.+++...|++.|++.|.+++.++....++ ||++|+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~   86 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG   86 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCG
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999998766677 999888


Q ss_pred             CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      |.   ++. ++   |+ .+.+|||++|+++. ..|
T Consensus        87 g~---~~~-~~---l~~~~~vi~l~~~~e~~-~~R  113 (168)
T 1zuh_A           87 GI---VMH-EN---LKGLGTTFYLKMDFETL-IKR  113 (168)
T ss_dssp             GG---GGC-GG---GTTSEEEEEEECCHHHH-HHH
T ss_pred             CE---ech-hH---HhcCCEEEEEECCHHHH-HHH
Confidence            73   665 44   55 57899999999865 444

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.79  E-value=3.3e-19  Score=153.53  Aligned_cols=105  Identities=23%  Similarity=0.243  Sum_probs=95.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      +.|+|+|++||||||+|+.||+.||++++|+|+++++..|.++.+++...|+..|++.+.++++++....++||++|+| 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~-   81 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG-   81 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT-
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc-
Confidence            5699999999999999999999999999999999999999988889988999999999999988887667789999887 


Q ss_pred             CcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          267 QGAAARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                        +++.+.+|+.|+.+.+|||++|.++.
T Consensus        82 --~v~~~~~~~~l~~~~vV~L~~~~e~~  107 (184)
T 2iyv_A           82 --AVTSPGVRAALAGHTVVYLEISAAEG  107 (184)
T ss_dssp             --GGGSHHHHHHHTTSCEEEEECCHHHH
T ss_pred             --EEcCHHHHHHHcCCeEEEEeCCHHHH
Confidence              47888899988778999999998865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.79  E-value=7.3e-19  Score=150.82  Aligned_cols=101  Identities=23%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.+++...|+..|++.|.++++.+....++||++|+|.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~   84 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   84 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCE
Confidence            37999999999999999999999999999999999999999999999889999999999999999887778999999884


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                         ++. .+   |+ .+.+|||+++.+..
T Consensus        85 ---~~~-~~---l~~~~~~i~l~~~~e~~  106 (175)
T 1via_A           85 ---VNV-SN---LEKAGFCIYLKADFEYL  106 (175)
T ss_dssp             ---GGS-TT---GGGGCEEEEEECCHHHH
T ss_pred             ---ehh-hH---HhcCCEEEEEeCCHHHH
Confidence               555 33   55 68999999998865

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.76  E-value=2.4e-18  Score=145.48  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      |.|+|+|++||||||+|+.||+.||++++|+|+++++..|..+.+++...|++.|++++.+++..+.....+||++|+| 
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~-   79 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG-   79 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH-
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC-
Confidence            5799999999999999999999999999999999999999999999998999999999999999887667789998876 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                        ..+.+.+++.|+ .+.+|||++|+++.
T Consensus        80 --~~~~~~~~~~l~~~~~~i~l~~~~e~~  106 (168)
T 2pt5_A           80 --LGANEEALNFMKSRGTTVFIDIPFEVF  106 (168)
T ss_dssp             --HHTCHHHHHHHHTTSEEEEEECCHHHH
T ss_pred             --EeCCHHHHHHHHcCCEEEEEECCHHHH
Confidence              478888888887 58999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.76  E-value=3.5e-18  Score=144.76  Aligned_cols=107  Identities=28%  Similarity=0.318  Sum_probs=95.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      +.|+|+|++||||||+|+.||+.||++++|+|+++++..|.++.+++...|++.|++++..+++.+. ..++||++||| 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~-   80 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG-   80 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT-
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc-
Confidence            4699999999999999999999999999999999998889899888888899999999999998887 56789999987 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                        .++.+.+++.|+ .+.+|||++|+++. ..|
T Consensus        81 --~~~~~~~~~~l~~~~~~i~l~~~~e~~-~~R  110 (173)
T 1e6c_A           81 --MVLLEQNRQFMRAHGTVVYLFAPAEEL-ALR  110 (173)
T ss_dssp             --GGGSHHHHHHHHHHSEEEEEECCHHHH-HHH
T ss_pred             --EEeCHHHHHHHHcCCeEEEEECCHHHH-HHH
Confidence              478888999886 68999999998865 444

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.74  E-value=8e-18  Score=142.86  Aligned_cols=106  Identities=23%  Similarity=0.276  Sum_probs=95.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      ++.|+|+|++||||||+++.||..+|++++|+|+++++..|..+..+++..|++.|+..|..++..+....++|+++|+|
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~~   83 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   83 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCCe
Confidence            46799999999999999999999999999999999988888889999988999999999998999887777899999876


Q ss_pred             CCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          266 QQGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                         .++.+.+++.|+ .|.+|||++++++.
T Consensus        84 ---~~~~~~~~~~l~~~~~~i~l~~~~~~l  110 (173)
T 1kag_A           84 ---SVKSRETRNRLSARGVVVYLETTIEKQ  110 (173)
T ss_dssp             ---GGGSHHHHHHHHHHSEEEECCCCHHHH
T ss_pred             ---EEecHHHHHHHHhCCEEEEEeCCHHHH
Confidence               478888999887 69999999998865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.53  E-value=7.1e-14  Score=119.17  Aligned_cols=139  Identities=12%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH-----H-HHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE-----T-FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE-----~-~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~  257 (345)
                      ..++.|+|+|++||||||+++.|+..+|+.++|+|++..     + ..|+.+.+   ..++.+|+.+|..+...+..+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   82 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKV   82 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHHCSE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHHHhcCCc
Confidence            457789999999999999999999999999999999842     2 23554442   34667788887644333333445


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh-cC---cEEEEEcChhhhchhhhhhhcccc--cc--------ccc--cceeeeeecc
Q 019172          258 AVVATLGGQQGAAARADKWQHLY-AG---FTVWLSQTEAMGKLLRVFVLSLHL--RS--------VTS--YFVRLEFVSS  321 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv~v~~~h~--R~--------~~~--~~~~le~i~~  321 (345)
                      +||++|+      +.+.+++.++ .+   .+|||++|+++. ..|...+..+.  ++        +..  |.....++.|
T Consensus        83 ~vi~~~~------~~~~~~~~l~~~~~~~~vv~l~~~~e~~-~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id  155 (175)
T 1knq_A           83 SLIVCSA------LKKHYRDLLREGNPNLSFIYLKGDFDVI-ESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVD  155 (175)
T ss_dssp             EEEECCC------CSHHHHHHHHTTCTTEEEEEEECCHHHH-HHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEE
T ss_pred             EEEEeCc------hHHHHHHHHHhcCCCEEEEEEECCHHHH-HHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEe
Confidence            7777764      5677888887 34   699999998865 44432221110  11        111  2222345566


Q ss_pred             CCCChHHHhhh
Q 019172          322 FSRTNEHIMAR  332 (345)
Q Consensus       322 ~~r~~~~~~~~  332 (345)
                      -++++|++..+
T Consensus       156 ~~~~~~~~~~~  166 (175)
T 1knq_A          156 IDQPLEGVVAS  166 (175)
T ss_dssp             CSSCHHHHHHH
T ss_pred             CCCCHHHHHHH
Confidence            67788887654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.51  E-value=6.7e-14  Score=119.10  Aligned_cols=112  Identities=16%  Similarity=0.018  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceee--CcHHHHHHHcC--------chhhhhhccChHHHHHHHHHH---HHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ--------TIDSWMLAEGSDSVVNGECDV---LES  251 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID--~D~lIE~~~g~--------sI~ei~~~~Gee~FRelE~~v---L~~  251 (345)
                      .++.|+|+|+|||||||+|+.||+.|+.+|++  .|++++...+.        ++.+++...+++.|+..+..+   ++.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999886  88888765442        223333445678888887665   455


Q ss_pred             HhcCCC-EEEEcCCCCCcccCcHHHHHHHhc-C-cEEEEEcChhhhchhh
Q 019172          252 LSSHVR-AVVATLGGQQGAAARADKWQHLYA-G-FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       252 L~~~~~-~VIAtGGG~~~avlr~~~r~~L~~-G-~VV~Ld~s~a~~~~~R  298 (345)
                      +..... +||++.-. ++...++.+++.++. + .+|||+++.+.. ..|
T Consensus        82 ~~~~g~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l-~~R  129 (178)
T 1qhx_A           82 MARAGARIIIDDVFL-GGAAAQERWRSFVGDLDVLWVGVRCDGAVA-EGR  129 (178)
T ss_dssp             HHHTTCEEEEEECCT-TTHHHHHHHHHHHTTCCEEEEEEECCHHHH-HHH
T ss_pred             HHhcCCeEEEEeccc-cChHHHHHHHHHhcCCcEEEEEEECCHHHH-HHH
Confidence            554443 45544210 001235567777763 4 578999988755 444

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.47  E-value=1.2e-13  Score=114.75  Aligned_cols=142  Identities=13%  Similarity=0.069  Sum_probs=92.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc----------hhhhhhccChHHHHHHHHHHHHHHhcCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----------IDSWMLAEGSDSVVNGECDVLESLSSHV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s----------I~ei~~~~Gee~FRelE~~vL~~L~~~~  256 (345)
                      +.|+|+|++||||||+|+.| +.+|++++++|+++++..+..          ...+++..|++.|+++..+.++.  ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence            57999999999999999999 999999999999998765321          23344446888888777666542  334


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHhc--C---cEEEEEcChhhhchhhhhhhcc----------ccc-------cccccce
Q 019172          257 RAVVATLGGQQGAAARADKWQHLYA--G---FTVWLSQTEAMGKLLRVFVLSL----------HLR-------SVTSYFV  314 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~~--G---~VV~Ld~s~a~~~~~Rv~v~~~----------h~R-------~~~~~~~  314 (345)
                      ..||.+|-      ...+.++.|+.  +   .+|||++|.++. ..|...+..          ..|       +...+..
T Consensus        79 ~~vi~dg~------~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  151 (179)
T 3lw7_A           79 DLVVFDGV------RSLAEVEEFKRLLGDSVYIVAVHSPPKIR-YKRMIERLRSDDSKEISELIRRDREELKLGIGEVIA  151 (179)
T ss_dssp             SCEEEECC------CCHHHHHHHHHHHCSCEEEEEEECCHHHH-HHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEeCC------CCHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHH
Confidence            55666652      66777777752  2   799999999865 333222111          001       1222334


Q ss_pred             eeeeeccCCCChHHHhhhcchhhh
Q 019172          315 RLEFVSSFSRTNEHIMARKPAVMK  338 (345)
Q Consensus       315 ~le~i~~~~r~~~~~~~~~~~~~~  338 (345)
                      ...++.+-..+.|++..+--++++
T Consensus       152 ~ad~vId~~~~~~~~~~~i~~~l~  175 (179)
T 3lw7_A          152 MADYIITNDSNYEEFKRRCEEVTD  175 (179)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             hCCEEEECCCCHHHHHHHHHHHHH
Confidence            445666666677877665444443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.43  E-value=1.6e-13  Score=122.89  Aligned_cols=102  Identities=12%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH---HcCchhhhhhccChHH--HH----------------
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF---AKQTIDSWMLAEGSDS--VV----------------  242 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~---~g~sI~ei~~~~Gee~--FR----------------  242 (345)
                      ++.+.|.|.|++||||||||+.||++||++|+| ++++++.   .|++. ++++..|+..  |+                
T Consensus         4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQD   81 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHH
Confidence            345689999999999999999999999999999 7777654   45664 4666667665  34                


Q ss_pred             --HHHHHHHHHHh--cCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          243 --NGECDVLESLS--SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       243 --elE~~vL~~L~--~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                        +.|.++++++.  ...++||...||.  .++.. +    .++.+|||++|.+..
T Consensus        82 ~~~~~~~~i~~la~~~~~~~Vi~Gr~g~--~vl~~-~----~~~~~V~L~A~~e~r  130 (201)
T 3fdi_A           82 IAIRQFNFIRKKANEEKESFVIVGRCAE--EILSD-N----PNMISAFILGDKDTK  130 (201)
T ss_dssp             HHHHHHHHHHHHHHTSCCCEEEESTTHH--HHTTT-C----TTEEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEECCcc--hhcCC-C----CCeEEEEEECCHHHH
Confidence              67899999998  7778888753431  23332 1    247899999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.40  E-value=9.1e-13  Score=117.06  Aligned_cols=106  Identities=11%  Similarity=0.042  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChH----HHHH-HHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSD----SVVN-GECDVLESLS  253 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee----~FRe-lE~~vL~~L~  253 (345)
                      .++.|+|+|++||||||+|+.||+.||++++|+|+++++.      .|..+.+++.. |+.    .|.. ++..+.....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence            4578999999999999999999999999999999998873      45556666643 432    2333 3333333222


Q ss_pred             cCCCEEEEcCCCCCcccCcHHHHHHHh-c----CcEEEEEcChhhhchhh
Q 019172          254 SHVRAVVATLGGQQGAAARADKWQHLY-A----GFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       254 ~~~~~VIAtGGG~~~avlr~~~r~~L~-~----G~VV~Ld~s~a~~~~~R  298 (345)
                      ...++|| .|.     +...+.+..|. .    +.+|||++++++. ..|
T Consensus        83 ~~~~~vi-dg~-----~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~-~~R  125 (222)
T 1zak_A           83 QENGWLL-DGY-----PRSYSQAMALETLEIRPDTFILLDVPDELL-VER  125 (222)
T ss_dssp             HHTCEEE-ESC-----CCSHHHHHHHHTTTCCCSEEEEEECCHHHH-HHH
T ss_pred             cCCcEEE-ECC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHH-HHH
Confidence            2345667 553     34445556665 2    5799999999865 444

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.40  E-value=4.7e-13  Score=114.62  Aligned_cols=102  Identities=17%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      .++.|+|+|++||||||+|+.||+.+|++++|+|+++++.      .|..+.+++.. |+..+++.+..++.+...+.  
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~--   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAER--   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCSE--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcCC--
Confidence            4678999999999999999999999999999999998865      34556777754 77778887777777765543  


Q ss_pred             EEEcCCCCCcccCcHHHHH----HHh-----cCcEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~----~L~-----~G~VV~Ld~s~a~~  294 (345)
                      ||..|.     +.....+.    ++.     .+.+|||++|+++.
T Consensus        80 ~i~dg~-----~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~  119 (186)
T 3cm0_A           80 VIFDGF-----PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEEL  119 (186)
T ss_dssp             EEEESC-----CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHH
T ss_pred             EEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence            554443     23333332    333     24799999998765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.39  E-value=5.7e-13  Score=119.09  Aligned_cols=148  Identities=14%  Similarity=0.063  Sum_probs=97.1

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHH---------------HHH-H
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV---------------NGE-C  246 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FR---------------elE-~  246 (345)
                      ..-.+.|.|+|++||||||+|+.||+.+|++++|+|+++++.++..+.++++..|++.|.               ..| .
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~   88 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENL   88 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHH
Confidence            344578999999999999999999999999999999999988876777777777766441               111 1


Q ss_pred             HHH-------------HHHhcCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccc--cc
Q 019172          247 DVL-------------ESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSV--TS  311 (345)
Q Consensus       247 ~vL-------------~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~--~~  311 (345)
                      ..+             +.+......||.-+.     .+.+..+.. ..+.+|||++|+++. ..|.   -..+++.  ..
T Consensus        89 ~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~p-----ll~e~~~~~-~~d~vi~v~a~~e~r-~~Rl---i~~q~~~~~~~  158 (192)
T 2grj_A           89 KKLELLVHPLMKKRVQEIINKTSGLIVIEAA-----LLKRMGLDQ-LCDHVITVVASRETI-LKRN---READRRLKFQE  158 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCEEEEEECT-----TTTTTTGGG-GCSEEEEEECCHHHH-HHHC---SSHHHHHTTCT
T ss_pred             HHHHhhhCHHHHHHHHHHHHHcCCEEEEEEe-----ceeecChHH-hCCEEEEEECCHHHH-HHHH---HHhcCCchhhh
Confidence            111             122222345555433     233333221 158899999999866 4554   1122333  34


Q ss_pred             cceeeeeeccCCCChHHHhhhcchhhhhh
Q 019172          312 YFVRLEFVSSFSRTNEHIMARKPAVMKTL  340 (345)
Q Consensus       312 ~~~~le~i~~~~r~~~~~~~~~~~~~~~~  340 (345)
                      ......++.+-+.+.|++...--.+++.|
T Consensus       159 ~~~~AD~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          159 DIVPQGIVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             TCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            45667788887888888877655555544

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.39  E-value=6.1e-13  Score=118.78  Aligned_cols=109  Identities=11%  Similarity=0.078  Sum_probs=75.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHH-HHHhc--C
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS--H  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL-~~L~~--~  255 (345)
                      +++.|+|+|++||||||+|+.||+.||++++|+|+++.+..      |..+.+++.. |+..+++.+..++ +.+..  .
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence            45789999999999999999999999999999999988754      4556666654 6666666655544 34442  3


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R  298 (345)
                      ..+||..+++   .....+.+..+. .+.+|||+++.+.. ..|
T Consensus        85 ~~~vid~~~~---~~~~~~~l~~~~~~~~vi~L~~~~~~~-~~R  124 (227)
T 1zd8_A           85 YSWLLDGFPR---TLPQAEALDRAYQIDTVINLNVPFEVI-KQR  124 (227)
T ss_dssp             SCEEEESCCC---SHHHHHHHHTTSCCCEEEEEECCHHHH-HHH
T ss_pred             CCEEEeCCCC---CHHHHHHHHHhcCCCEEEEEECCHHHH-HHH
Confidence            4566665554   232333333333 57899999999865 444

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.39  E-value=8.3e-13  Score=117.60  Aligned_cols=109  Identities=15%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC---
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH---  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~---  255 (345)
                      +++.|+|+|++||||||+|+.||+.||++++|+|+++++.      .|..+.+++.. |+..+++.+.+++......   
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~   82 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDLGVC   82 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999999876      35567777754 7777788777776553321   


Q ss_pred             CCEEEEcCCCCCcccCc---HHHHH-HHh-cC----cEEEEEcChhhhchhhhh
Q 019172          256 VRAVVATLGGQQGAAAR---ADKWQ-HLY-AG----FTVWLSQTEAMGKLLRVF  300 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr---~~~r~-~L~-~G----~VV~Ld~s~a~~~~~Rv~  300 (345)
                      .+.||..|-     +..   .+.+. .+. .|    .+|||++++++. ..|..
T Consensus        83 ~~~~i~dg~-----~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-~~Rl~  130 (217)
T 3be4_A           83 VNGFVLDGF-----PRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEI-IERIS  130 (217)
T ss_dssp             TTCEEEESC-----CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-HHHHH
T ss_pred             CCCEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHH
Confidence            333444442     222   22223 332 33    799999999876 55543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.38  E-value=5.3e-12  Score=110.82  Aligned_cols=139  Identities=9%  Similarity=-0.026  Sum_probs=92.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH------HHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~------~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~  257 (345)
                      ..+..|+|+|++||||||+++.|+..+|+.++|+|++...      ..|..+.+   ..+..+++.+|..++..+.....
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~g~~  103 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSLAEWMDARADAGVS  103 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence            3578899999999999999999999999999999998432      22333322   23455677777777766666566


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHhc----CcEEEEEcChhhhchhhhhhhcccccc---c--------cccceeeeeeccC
Q 019172          258 AVVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAMGKLLRVFVLSLHLRS---V--------TSYFVRLEFVSSF  322 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~---~--------~~~~~~le~i~~~  322 (345)
                      +||+++.      +.+.+++.++.    ..+|||+++.++. ..|...+..+...   +        .-|.....++.|-
T Consensus       104 viid~~~------~~~~~~~~l~~~~~~~~vv~l~~~~e~l-~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~  176 (200)
T 4eun_A          104 TIITCSA------LKRTYRDVLREGPPSVDFLHLDGPAEVI-KGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLDL  176 (200)
T ss_dssp             EEEEECC------CCHHHHHHHTTSSSCCEEEEEECCHHHH-HHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEET
T ss_pred             EEEEchh------hhHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEEC
Confidence            7777753      67888888873    5799999998865 4443222111110   0        1112223455666


Q ss_pred             CCChHHHhhh
Q 019172          323 SRTNEHIMAR  332 (345)
Q Consensus       323 ~r~~~~~~~~  332 (345)
                      +++.|++.++
T Consensus       177 ~~~~~e~~~~  186 (200)
T 4eun_A          177 RQPPEQLIER  186 (200)
T ss_dssp             TSCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            7788877653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.35  E-value=3.3e-12  Score=111.62  Aligned_cols=136  Identities=15%  Similarity=0.064  Sum_probs=82.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH--HHcCchhhhhhc-cChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET--FAKQTIDSWMLA-EGSDSVVNGECDVLESLSSHVRAVVAT  262 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~--~~g~sI~ei~~~-~Gee~FRelE~~vL~~L~~~~~~VIAt  262 (345)
                      .+.|+|+|++||||||+|+.|++.+|+.++|+|+++..  ..++.....+.. ..+.+++.++..    +..+..+||.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~----~~~~~~vivd~   93 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGER----LASREPVVVSC   93 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHH----HTSSSCCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHH----HhcCCCEEEEC
Confidence            46899999999999999999999999999999998532  111122222221 123334333322    23334456665


Q ss_pred             CCCCCcccCcHHHHHHHhc-----CcEEEEEcChhhhchhhhhhhcccccc---ccc--------cceeeeeeccCCCCh
Q 019172          263 LGGQQGAAARADKWQHLYA-----GFTVWLSQTEAMGKLLRVFVLSLHLRS---VTS--------YFVRLEFVSSFSRTN  326 (345)
Q Consensus       263 GGG~~~avlr~~~r~~L~~-----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~---~~~--------~~~~le~i~~~~r~~  326 (345)
                      ++      +.+..++.+..     ..+|||+++.++. ..|...+..+.++   +..        +.....++.|-++++
T Consensus        94 ~~------~~~~~~~~l~~~~~~~~~vi~l~~~~e~~-~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~  166 (202)
T 3t61_A           94 SA------LKRSYRDKLRESAPGGLAFVFLHGSESVL-AERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPL  166 (202)
T ss_dssp             CC------CSHHHHHHHHHTSTTCCEEEEEECCHHHH-HHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEESSSCH
T ss_pred             CC------CCHHHHHHHHHhcCCCeEEEEEeCCHHHH-HHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeCCCCH
Confidence            43      56777887762     4799999998865 4443333222111   011        112234456777888


Q ss_pred             HHHhhh
Q 019172          327 EHIMAR  332 (345)
Q Consensus       327 ~~~~~~  332 (345)
                      |++.++
T Consensus       167 ~e~~~~  172 (202)
T 3t61_A          167 AEIVRE  172 (202)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.35  E-value=3e-12  Score=109.95  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHH----Hhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES----LSS  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~----L~~  254 (345)
                      +++.|+|+|++||||||+|+.||+.||++++|+|+++.+.      .|..+.+++. .|+..|++....++.+    ...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999999999999998773      3455666665 4665555544443332    222


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHH----h-cCcEEEEEcChhhh
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHL----Y-AGFTVWLSQTEAMG  294 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L----~-~G~VV~Ld~s~a~~  294 (345)
                      ....||..|-     +...+.++.+    . .+.+|||++|+++.
T Consensus        87 ~~~~vi~d~~-----~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~  126 (196)
T 2c95_A           87 TSKGFLIDGY-----PREVQQGEEFERRIGQPTLLLYVDAGPETM  126 (196)
T ss_dssp             TCSCEEEESC-----CCSHHHHHHHHHHTCCCSEEEEEECCHHHH
T ss_pred             cCCcEEEeCC-----CCCHHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence            3344555442     2333333332    2 46899999998865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.33  E-value=2.3e-12  Score=114.30  Aligned_cols=107  Identities=12%  Similarity=0.077  Sum_probs=74.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhc----
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS----  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~----  254 (345)
                      +++.|+|+|++||||||+|+.||+.||++++|+|+++++.      .|..+.+++. .|+..+++.+..++.+...    
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999999999999999875      3555666665 4666667766666655332    


Q ss_pred             -CCCEEEEcCCCCCcccCcHHHHH----HHh-cC----cEEEEEcChhhhchhhh
Q 019172          255 -HVRAVVATLGGQQGAAARADKWQ----HLY-AG----FTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       255 -~~~~VIAtGGG~~~avlr~~~r~----~L~-~G----~VV~Ld~s~a~~~~~Rv  299 (345)
                       +..+|+ .|-     +...+.++    .+. .|    .+|||+++.++. ..|.
T Consensus        82 ~~~~~i~-dg~-----~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-~~R~  129 (220)
T 1aky_A           82 CKNGFIL-DGF-----PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL-VARI  129 (220)
T ss_dssp             GGSCEEE-ESC-----CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-HHHH
T ss_pred             cCCCeEE-eCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHH
Confidence             233444 332     22222222    232 23    799999999866 5553

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.31  E-value=5.2e-12  Score=106.63  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=74.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH-hhCCceeeCcHHHHHHHcCchh--hhhhccChHHHHHHHHHHHHHHh---cCCCEEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAV-GLGYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLS---SHVRAVV  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~-~Lg~~fID~D~lIE~~~g~sI~--ei~~~~Gee~FRelE~~vL~~L~---~~~~~VI  260 (345)
                      +.|+|+|++||||||+|+.|++ .+|+.++++|.+.+...+.+..  ..+...++..+++...++++.+.   .....||
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi   82 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEE
Confidence            4689999999999999999999 7999999999988877665332  12334466677777667777765   4455666


Q ss_pred             EcCCCCCcccCcHHHHHHHh-----cC---cEEEEEcChhhhchhh
Q 019172          261 ATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~~~~R  298 (345)
                      ..+.     ......++.+.     .|   .+|||+++.++. ..|
T Consensus        83 ~d~~-----~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~-~~R  122 (181)
T 1ly1_A           83 ISDT-----NLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-VKR  122 (181)
T ss_dssp             ECSC-----CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHH-HHH
T ss_pred             EeCC-----CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH-HHH
Confidence            6554     24444444442     24   589999988755 344

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.31  E-value=4.3e-12  Score=107.99  Aligned_cols=106  Identities=12%  Similarity=0.156  Sum_probs=72.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHHHhc--CCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSS--HVR  257 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~L~~--~~~  257 (345)
                      ++.|+|+|++||||||+|+.||+.||++++|+|+++.+..      |..+.+++. .|+..+++.+..++.+...  ...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence            3579999999999999999999999999999999887653      334555554 3555556666666555432  233


Q ss_pred             EEEEcCCCCCcccCcHHHHHHH----h----cCcEEEEEcChhhhchhh
Q 019172          258 AVVATLGGQQGAAARADKWQHL----Y----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L----~----~G~VV~Ld~s~a~~~~~R  298 (345)
                      .||..|-     +...+.++.+    .    .+.+|||++|+++. ..|
T Consensus        85 ~vi~d~~-----~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~-~~R  127 (194)
T 1qf9_A           85 NFLVDGF-----PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM-TQR  127 (194)
T ss_dssp             CEEEETC-----CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH-HHH
T ss_pred             CEEEeCc-----CCCHHHHHHHHHHHhccCCCCEEEEEECCHHHH-HHH
Confidence            4554443     4555555544    2    25699999998865 444

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.31  E-value=6.1e-12  Score=108.28  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHH----HHhcC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLE----SLSSH  255 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~----~L~~~  255 (345)
                      ++.|+|+|++||||||+|+.||+.||++++|+|+++.+..      |..+.+++. .|+..+++....++.    .....
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccccc
Confidence            5789999999999999999999999999999999987654      445566664 355444443333332    22223


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhhchhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~R  298 (345)
                      ...||..|-     +...+.+..+.     .+.+|||++|+++. ..|
T Consensus        91 ~~~vi~dg~-----~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~-~~R  132 (199)
T 2bwj_A           91 TRGFLIDGY-----PREVKQGEEFGRRIGDPQLVICMDCSADTM-TNR  132 (199)
T ss_dssp             CSCEEEETC-----CSSHHHHHHHHHHTCCCSEEEEEECCHHHH-HHH
T ss_pred             CccEEEeCC-----CCCHHHHHHHHHhcCCCCEEEEEECCHHHH-HHH
Confidence            445665543     45555555443     36799999998864 344

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.30  E-value=4.9e-12  Score=107.83  Aligned_cols=104  Identities=18%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-------cCchhhhhhccChHHHHHHHHHHHHH----H-
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-------KQTIDSWMLAEGSDSVVNGECDVLES----L-  252 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-------g~sI~ei~~~~Gee~FRelE~~vL~~----L-  252 (345)
                      +++.|+|+|++||||||+|+.||+.+|++++|.|+++++..       |..+.+++. .|+..+++.+..++.+    . 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~   80 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM   80 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence            46789999999999999999999999999999999987754       223444443 4655555443333221    1 


Q ss_pred             --hcCCCEEEEcCCCCCcccCcHHHHHHHh--------cCcEEEEEcChhhh
Q 019172          253 --SSHVRAVVATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAMG  294 (345)
Q Consensus       253 --~~~~~~VIAtGGG~~~avlr~~~r~~L~--------~G~VV~Ld~s~a~~  294 (345)
                        ......||..|-     +...+.++.+.        .+.+|||++|+++.
T Consensus        81 ~~~~~~~~vi~dg~-----~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~  127 (196)
T 1tev_A           81 AANAQKNKFLIDGF-----PRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC  127 (196)
T ss_dssp             HHCTTCCEEEEESC-----CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHH
T ss_pred             ccccCCCeEEEeCC-----CCCHHHHHHHHHHhcccCCCCEEEEEECCHHHH
Confidence              112345554433     45555544321        24699999998865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.29  E-value=1.7e-12  Score=126.73  Aligned_cols=81  Identities=9%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcC-----chhhh-hhccChHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSW-MLAEGSDSVVNG  244 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~-----sI~ei-~~~~Gee~FRel  244 (345)
                      +++.|+|+|++|+||||||..||++++.++||+|.+              .++..|.     ++.++ .+..++..|++.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            345799999999999999999999999999999998              5666666     56677 788899999999


Q ss_pred             HHHHHHHHhcCCCEEEEcCCC
Q 019172          245 ECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       245 E~~vL~~L~~~~~~VIAtGGG  265 (345)
                      +.++++++....+.+|.+||+
T Consensus       119 a~~~i~~i~~~g~~pIlvGGt  139 (339)
T 3a8t_A          119 AGKAVSEITGRRKLPVLVGGS  139 (339)
T ss_dssp             HHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHhcCCeEEEEcCH
Confidence            999999998888899999996

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.29  E-value=1.2e-11  Score=108.06  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH  255 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~  255 (345)
                      ....++.|+|+|++||||||+|+.||+.||++++|+|+++++.      .|..+.+++. .|+..|++.+..++.+....
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~   94 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN   94 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc
Confidence            3456789999999999999999999999999999999998773      2334555554 46666777666666554321


Q ss_pred             ---CCEEEEcCCCCCcccCcHHHH----HHHh-----cCcEEEEEcChhhhchhh
Q 019172          256 ---VRAVVATLGGQQGAAARADKW----QHLY-----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       256 ---~~~VIAtGGG~~~avlr~~~r----~~L~-----~G~VV~Ld~s~a~~~~~R  298 (345)
                         .+.||..|.     ......+    +.+.     .+.+|||++|+++. ..|
T Consensus        95 ~~~~~~vIldg~-----~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~-~~R  143 (201)
T 2cdn_A           95 PDAANGFILDGY-----PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL-LER  143 (201)
T ss_dssp             GGGTTCEEEESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-HHH
T ss_pred             ccCCCeEEEECC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHH
Confidence               223443332     1222222    2343     24799999998865 444

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.28  E-value=2e-12  Score=118.53  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cCchhhhhhccChH------------------------
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQTIDSWMLAEGSD------------------------  239 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~sI~ei~~~~Gee------------------------  239 (345)
                      .+.|.|.|++||||||||+.||+.||++|+|.|.+.+...  |++.. .+...++.                        
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQ-FFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHH-HHHHHHhhccccHHHHHhcccccccccccccc
Confidence            4579999999999999999999999999999766544332  44432 33333322                        


Q ss_pred             -------HHHHHHHHHHHHHhcCCCEEEE-cCCCCCcccCc--HHHHHHHhcCcEEEEEcChhhh
Q 019172          240 -------SVVNGECDVLESLSSHVRAVVA-TLGGQQGAAAR--ADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       240 -------~FRelE~~vL~~L~~~~~~VIA-tGGG~~~avlr--~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                             .....+.++++++....++||+ +|||   ++++  +++    .++.+|||++|.+..
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg---~vl~~~~~~----~~~~~VfL~A~~e~r  150 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG---YVLDQDEDI----ERLIRIFVYTDKVKK  150 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHSCEEEESTTHH---HHHHHCTTC----CEEEEEEEECCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcc---hhcccccCC----CCeEEEEEECCHHHH
Confidence                   2235677888888877788887 8776   3453  222    247899999998855

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.27  E-value=1.6e-11  Score=105.10  Aligned_cols=104  Identities=12%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHH-------HHHHhcCCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV-------LESLSSHVR  257 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~v-------L~~L~~~~~  257 (345)
                      .++.|+|+|++||||||+|+.||+.||++++|.|.+.+...+. +    ...++++++.++...       ++.+...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~   78 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG-L----GWSDREWSRRVGATAIMMLYHTAATILQSGQ   78 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH-H----CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh-c----CccchHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence            3578999999999999999999999999999999998776542 1    223445555554321       223232334


Q ss_pred             EEEEcCCCCCcccCcHHHHHH--Hh-cC----cEEEEEcChhhhchhh
Q 019172          258 AVVATLGGQQGAAARADKWQH--LY-AG----FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~--L~-~G----~VV~Ld~s~a~~~~~R  298 (345)
                      .||..+..    ......+.+  |. .+    .+|||++|+++. ..|
T Consensus        79 ~vi~d~~~----~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~-~~R  121 (193)
T 2rhm_A           79 SLIMESNF----RVDLDTERMQNLHTIAPFTPIQIRCVASGDVL-VER  121 (193)
T ss_dssp             CEEEEECC----CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHH-HHH
T ss_pred             eEEEecCC----CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH-HHH
Confidence            45544431    011111222  44 33    699999998865 444

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.27  E-value=9e-12  Score=106.11  Aligned_cols=105  Identities=10%  Similarity=0.031  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHH---cC--chhhhhhccChHHHHHHHHHH---HHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDV---LES  251 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~---g~--sI~ei~~~~Gee~FRelE~~v---L~~  251 (345)
                      +++.|+|+|++||||||+++.||+.||     ++++++|+++.+..   |.  +..++.. ...+.++..+..+   +..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~   80 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE   80 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999     99999999876543   33  3444432 2344555555433   333


Q ss_pred             HhcCCCEEEEcCCCCCcccCcHHHH------HHH---hcCcEEEEEcChhhh
Q 019172          252 LSSHVRAVVATLGGQQGAAARADKW------QHL---YAGFTVWLSQTEAMG  294 (345)
Q Consensus       252 L~~~~~~VIAtGGG~~~avlr~~~r------~~L---~~G~VV~Ld~s~a~~  294 (345)
                      +.... .||.+|++   +..+...+      ..+   ..+.+|||++|+++.
T Consensus        81 ~~~~~-~viid~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  128 (192)
T 1kht_A           81 MAKES-PVAVDTHS---TVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEI  128 (192)
T ss_dssp             HHTTS-CEEEECCS---EEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH
T ss_pred             hccCC-eEEEccce---eccccccccccCcHHHHhccCCCEEEEEeCCHHHH
Confidence            44434 45556665   22222111      223   247799999999866

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.27  E-value=4.4e-13  Score=116.54  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=38.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh-hCCceeeCcHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG-LGYTPLSTKELLETF  224 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~-Lg~~fID~D~lIE~~  224 (345)
                      ..+++.|+|+|++||||||+|+.||+. +|++++|+|+++++.
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~   49 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN   49 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence            345789999999999999999999999 899999999998874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.26  E-value=1.2e-11  Score=113.78  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh---hCCcee--eCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEE
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG---LGYTPL--STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~---Lg~~fI--D~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VI  260 (345)
                      ++.|+|+|++||||||+|+.|++.   +|++++  |.|.+.+...+      +...++..|+..+...++.+... ..||
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~~e~~~~~~~~~~i~~~l~~-~~vI   76 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEKYEEFIKKSTYRLIDSALKN-YWVI   76 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhhC-CEEE
Confidence            567999999999999999999998   899998  99988765443      34557888999888887776665 5566


Q ss_pred             EcCCCCCcccCcHHHHHHHh-----c---CcEEEEEcChhhh
Q 019172          261 ATLGGQQGAAARADKWQHLY-----A---GFTVWLSQTEAMG  294 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L~-----~---G~VV~Ld~s~a~~  294 (345)
                      ..+.     .....+++.+.     .   ..+|||++|+++.
T Consensus        77 iD~~-----~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~  113 (260)
T 3a4m_A           77 VDDT-----NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVL  113 (260)
T ss_dssp             ECSC-----CCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHH
T ss_pred             EeCC-----cccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH
Confidence            5553     35566666554     1   4699999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.25  E-value=2.7e-12  Score=109.30  Aligned_cols=106  Identities=15%  Similarity=0.037  Sum_probs=62.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCcee-eCcHHHHHHHcCchhhhhhccChHHHHH------HHHHHHHHHhc-CC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVVN------GECDVLESLSS-HV  256 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-D~D~lIE~~~g~sI~ei~~~~Gee~FRe------lE~~vL~~L~~-~~  256 (345)
                      +++.|+|+|++||||||+|+.||+.||++++ |.|     ..|..+.+++. +|++.|+.      ...++++.+.. ..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~-----~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g   77 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE-----EMGQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAA   77 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH-----HHHHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh-----hhHHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999 543     23445555555 45544432      22344555443 24


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHh-cCcE---EEEEcChhhhchhh
Q 019172          257 RAVVATLGGQQGAAARADKWQHLY-AGFT---VWLSQTEAMGKLLR  298 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~-~G~V---V~Ld~s~a~~~~~R  298 (345)
                      ..||..+.-. .....++.++.++ .|.+   |||++++++. ..|
T Consensus        78 ~~vi~d~~~~-~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~-~~R  121 (183)
T 2vli_A           78 GPLIVPVSIS-DTARHRRLMSGLKDRGLSVHHFTLIAPLNVV-LER  121 (183)
T ss_dssp             SCEEEEECCC-CHHHHHHHHHHHHHTTCCCEEEEEECCHHHH-HHH
T ss_pred             CcEEEeeecc-CHHHHHHHHHHHHhcCCceEEEEEeCCHHHH-HHH
Confidence            5555443310 0013344555665 5655   9999998865 344

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.24  E-value=2.4e-11  Score=109.30  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC---
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH---  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~---  255 (345)
                      .++.|+|+|++||||||+|+.||+.||++++++|+++++.      .|..+.+++. .|+..+++.+.+++......   
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMD-AGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHH-CCCcCCHHHHHHHHHHHHhcccc
Confidence            5678999999999999999999999999999999998874      3445666664 46666677777666654332   


Q ss_pred             CCEEEEcCCCCCcccCcHHHHH----HHh-----cCcEEEEEcChhhhchhhhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAMGKLLRVF  300 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~----~L~-----~G~VV~Ld~s~a~~~~~Rv~  300 (345)
                      .+.||..|-     +......+    ++.     .+.+|||+++.++. ..|..
T Consensus        94 ~~g~ildg~-----~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~-~~Rl~  141 (233)
T 1ak2_A           94 KNGFLLDGF-----PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL-IRRIT  141 (233)
T ss_dssp             TTCEEEESC-----CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-HHHHH
T ss_pred             cCcEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHH
Confidence            123444442     12222122    232     25799999999876 55543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.22  E-value=5.3e-12  Score=110.05  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhhccChHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSV  241 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~~~Gee~F  241 (345)
                      +.|.|+|++||||||+++.||+ +|++++|+|+++++..   +..+.++++..|++.|
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~   58 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGIL   58 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTT
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhh
Confidence            4799999999999999999999 9999999999988655   2345555555554433

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.19  E-value=8.6e-11  Score=103.43  Aligned_cols=121  Identities=10%  Similarity=0.065  Sum_probs=72.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hhc---CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSS---HV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~---~~  256 (345)
                      |+|+|+|++||||||+++.||+.+|++++|+|+++.+..      |..+.+++.. |.....+....++.+ +..   ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccccC
Confidence            579999999999999999999999999999999988743      2334444432 322222222233222 322   23


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHh---------cCcEEEEEcChhhhchhhhhhhcccccccccccee
Q 019172          257 RAVVATLGGQQGAAARADKWQHLY---------AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVR  315 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~---------~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~  315 (345)
                      ++|+ .|-     +........+.         -..+|||++|.++. ..|..-++.|.-....|+..
T Consensus        80 ~~il-dg~-----p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-~~Rl~~R~~~~~~g~~y~~~  140 (216)
T 3dl0_A           80 GFLL-DGF-----PRTVAQAEALEEILEEMGKPIDYVINIQVDKDVL-MERLTGRRICSVCGTTYHLV  140 (216)
T ss_dssp             CEEE-ESC-----CCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGH-HHHHHTEEEETTTCCEEETT
T ss_pred             CEEE-eCC-----CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-HHHHHCCCcCCccCCccccc
Confidence            3444 332     33333333332         14699999999866 55644444444444444433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.19  E-value=4.6e-11  Score=105.64  Aligned_cols=141  Identities=11%  Similarity=0.067  Sum_probs=86.9

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC------CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHV  256 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg------~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~  256 (345)
                      ...++.|+|+|++||||||+++.|++.|+      +.++|.|.+.+...+ .. .++...+++.|+.++.. +..+...+
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~-~~-~~~~~~r~~~~~~~~~~-~~~~l~~g   98 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK-DL-GFSEADRNENIRRIAEV-AKLFADSN   98 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT-TC-CSSHHHHHHHHHHHHHH-HHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc-cc-CCCHHHHHHHHHHHHHH-HHHHHHCC
Confidence            34578899999999999999999999987      888888877543221 11 13335567777776643 44444445


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHhc--------------CcEEEEEcChhhhchhhh------hhhccccc---cccccc
Q 019172          257 RAVVATLGGQQGAAARADKWQHLYA--------------GFTVWLSQTEAMGKLLRV------FVLSLHLR---SVTSYF  313 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~~--------------G~VV~Ld~s~a~~~~~Rv------~v~~~h~R---~~~~~~  313 (345)
                      ..||+++.     .....+++.++.              ..+|||++|+++. ..|.      ..+..+..   .+..++
T Consensus        99 ~~VI~d~~-----~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~-~~R~~r~~~~~~r~~~~~~~~~~~~~y  172 (211)
T 1m7g_A           99 SIAITSFI-----SPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA-EQRDPKGLYKKAREGVIKEFTGISAPY  172 (211)
T ss_dssp             CEEEEECC-----CCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH-HTSCTTCHHHHHHHTSSSSCBTTTBCC
T ss_pred             CEEEEecC-----CccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHH-HHhhhHHHHHHHHhcchhhhhhhhhhc
Confidence            67777633     233345555531              4699999999876 4441      11111111   122222


Q ss_pred             e---eeeeeccCCC-ChHHHhhh
Q 019172          314 V---RLEFVSSFSR-TNEHIMAR  332 (345)
Q Consensus       314 ~---~le~i~~~~r-~~~~~~~~  332 (345)
                      .   ...++.|-+. +.|++..+
T Consensus       173 ~~~~~~~~~IDt~~~s~eev~~~  195 (211)
T 1m7g_A          173 EAPANPEVHVKNYELPVQDAVKQ  195 (211)
T ss_dssp             CCCSSCSEEEECSSSCHHHHHHH
T ss_pred             cCCCCCeEEEECCCCCHHHHHHH
Confidence            2   3346678887 88888664

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.19  E-value=4.6e-11  Score=109.21  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=76.5

Q ss_pred             HHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcHH---------HHHHHcCchhhhhhccChHHH
Q 019172          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKEL---------LETFAKQTIDSWMLAEGSDSV  241 (345)
Q Consensus       173 ~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~l---------IE~~~g~sI~ei~~~~Gee~F  241 (345)
                      |+.+..+......++.|+|+|+|||||||+|+.|++.++  +.++|.|.+         +.+..|+.+.++++.    .+
T Consensus        19 ~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~----~~   94 (253)
T 2p5t_B           19 LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD----FA   94 (253)
T ss_dssp             HHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH----HH
T ss_pred             HHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH----HH
Confidence            333333333334567899999999999999999999997  678899997         444456666555432    24


Q ss_pred             HHHHHHHHHHHhcC-CCEEEEcCCCCCcccCcHHHHHHHh-cCc---EEEEEcChhhh
Q 019172          242 VNGECDVLESLSSH-VRAVVATLGGQQGAAARADKWQHLY-AGF---TVWLSQTEAMG  294 (345)
Q Consensus       242 RelE~~vL~~L~~~-~~~VIAtGGG~~~avlr~~~r~~L~-~G~---VV~Ld~s~a~~  294 (345)
                      +++...+++.+... .++||.++++.  ...+..+++.++ .|.   +|||+++.++.
T Consensus        95 ~~~~~~~~~~~~~~g~~vVid~~~~~--~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~  150 (253)
T 2p5t_B           95 GKMVESLVTKLSSLGYNLLIEGTLRT--VDVPKKTAQLLKNKGYEVQLALIATKPELS  150 (253)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTS--SHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCC--HHHHHHHHHHHHHCCCcEEEEEEeCCHHHH
Confidence            45556666666554 46777765542  234566677776 575   45668877754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.18  E-value=5e-11  Score=105.45  Aligned_cols=106  Identities=12%  Similarity=0.095  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHH-HhcC--CC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES-LSSH--VR  257 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~-L~~~--~~  257 (345)
                      |+|+|+|++||||||+|+.||+.+|++++++|+++.+.      .|..+.+++.. |.....+....++.. +...  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~   79 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRN   79 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCC
Confidence            47999999999999999999999999999999999874      24445555543 322112222233332 2221  12


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh-c----CcEEEEEcChhhhchhhh
Q 019172          258 AVVATLGGQQGAAARADKWQHLY-A----GFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~-~----G~VV~Ld~s~a~~~~~Rv  299 (345)
                      .||..|-     +........|. .    +.+|||+++.++. ..|.
T Consensus        80 ~~i~dg~-----~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~-~~R~  120 (214)
T 1e4v_A           80 GFLLDGF-----PRTIPQADAMKEAGINVDYVLEFDVPDELI-VDRI  120 (214)
T ss_dssp             CEEEESC-----CCSHHHHHHHHHTTCCCSEEEEEECCHHHH-HHHH
T ss_pred             CEEEeCC-----CCCHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHH
Confidence            3554553     23334444453 2    4799999999866 4553

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.18  E-value=2.6e-11  Score=103.87  Aligned_cols=94  Identities=15%  Similarity=0.059  Sum_probs=62.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHH--HHHH---HHHHhcCCCE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG--ECDV---LESLSSHVRA  258 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRel--E~~v---L~~L~~~~~~  258 (345)
                      ..++.|+|+|++||||||+++.||+.+|++++|+|+++++.      .++...|+..|+..  +..+   ++.+....+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE------QLYDGYDEEYDCPILDEDRVVDELDNQMREGGV   82 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH------TCEEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc------chhhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence            35678999999999999999999999999999999998876      23333344433321  1112   2222222445


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh---cCcEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~---~G~VV~Ld~s~a~~  294 (345)
                      ||...+           +..+.   .+.+|||+++.++.
T Consensus        83 vv~~~~-----------~~~~~~~~~~~vi~L~~~~e~l  110 (180)
T 3iij_A           83 IVDYHG-----------CDFFPERWFHIVFVLRTDTNVL  110 (180)
T ss_dssp             EEECSC-----------CTTSCGGGCSEEEEEECCHHHH
T ss_pred             EEEech-----------hhhcchhcCCEEEEEECCHHHH
Confidence            554332           12222   57899999999865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.18  E-value=2e-10  Score=100.70  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      .++..|+|+|++||||||+++.||..|   |..  ++|+|++...... .+. +..+...+.++... .+...+......
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~   99 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR-DLS-FKAEDRAENIRRVG-EVAKLFADAGII   99 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-TCC-SSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc-ccC-cChHHHHHHHHHHH-HHHHHHHhCCce
Confidence            357889999999999999999999999   666  9999987542211 111 11111122233322 333444444556


Q ss_pred             EEEcCCCCCcccCcHHHHHHHhc----C--cEEEEEcChhhhchhh
Q 019172          259 VVATLGGQQGAAARADKWQHLYA----G--FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~~----G--~VV~Ld~s~a~~~~~R  298 (345)
                      ||+++++     ..++.|+.++.    .  .+|||+++.++. ..|
T Consensus       100 vi~~~~~-----~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~-~~R  139 (200)
T 3uie_A          100 CIASLIS-----PYRTDRDACRSLLPEGDFVEVFMDVPLSVC-EAR  139 (200)
T ss_dssp             EEEECCC-----CCHHHHHHHHHTSCTTSEEEEEECCCHHHH-HHH
T ss_pred             EEEecCC-----chHHHHHHHHHhcCCCCEEEEEEeCCHHHH-HHh
Confidence            6655543     45666776652    1  469999999866 444

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.18  E-value=5.8e-11  Score=104.30  Aligned_cols=120  Identities=12%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hh---cCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LS---SHV  256 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~---~~~  256 (345)
                      |+|+|+|++||||||+|+.||+.+|++++|+|+++.+..      |..+.+++.. |.....+....++.+ +.   ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence            579999999999999999999999999999999988743      2234444432 322222333333333 22   223


Q ss_pred             CEEEEcCCCCCcccCcHHHHHHHh---------cCcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172          257 RAVVATLGGQQGAAARADKWQHLY---------AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV  314 (345)
Q Consensus       257 ~~VIAtGGG~~~avlr~~~r~~L~---------~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~  314 (345)
                      .+|+ .|-     +........+.         -+.+|||++|.++. ..|..-++.|......|+.
T Consensus        80 ~~il-dg~-----p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-~~Rl~~R~~~~~~g~~y~~  139 (216)
T 3fb4_A           80 GFLL-DGF-----PRTVAQADALDSLLTDLGKKLDYVLNIKVEQEEL-MKRLTGRWICKTCGATYHT  139 (216)
T ss_dssp             CEEE-ESC-----CCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-HHHHHSEEEETTTCCEEET
T ss_pred             cEEE-eCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHHcCCCCCccCCcccc
Confidence            3444 442     34443333332         24799999999865 5554444444444444443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.18  E-value=5.3e-11  Score=106.73  Aligned_cols=106  Identities=7%  Similarity=0.004  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC--CCE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH--VRA  258 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~--~~~  258 (345)
                      +.|+|+|++||||||+++.||+.||++++++|+++.+.      .|..+.+++. .|+..+++....++......  ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence            46999999999999999999999999999999998875      2344555554 45544555555555443322  334


Q ss_pred             EEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhh
Q 019172          259 VVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv  299 (345)
                      ||..|-     +......+.|    . .    ..+|||++|+++. ..|.
T Consensus        80 vIlDg~-----~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~-~~Rl  123 (223)
T 2xb4_A           80 WLLDGF-----PRNTVQAQKLFEALQEKGMKINFVIEILLPREVA-KNRI  123 (223)
T ss_dssp             EEEESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-HHHH
T ss_pred             EEEeCC-----cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHH
Confidence            554443     2322223333    2 2    3799999999865 4553

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.15  E-value=2.2e-11  Score=105.05  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=37.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-cCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQT  228 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g~s  228 (345)
                      +.+.|.|+|++||||||+|+.||+. |++++|+|+++++.. |.+
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~   50 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE   50 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH
Confidence            3567999999999999999999999 999999999987766 543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.12  E-value=3.7e-10  Score=94.56  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=61.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc----
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT----  262 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt----  262 (345)
                      +.|+|+|++||||||+|+.||+.+|++++|.|.+.+...  .+..+        |.     ..+.+..+. .||+.    
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--~~~~~--------~~-----~~~~l~~~~-~vi~dr~~~   65 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--GNEKL--------FE-----HFNKLADED-NVIIDRFVY   65 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--CHHHH--------HH-----HHHHHTTCC-SEEEESCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--HHHHH--------HH-----HHHHHHhCC-CeEEeeeec
Confidence            468999999999999999999999999999999876533  11222        21     112233322 23321    


Q ss_pred             ------CCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhhchhh
Q 019172          263 ------LGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       263 ------GGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~R  298 (345)
                            ++|.....+...++..+.     .+.+|||++++++. ..|
T Consensus        66 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~-~~R  111 (173)
T 3kb2_A           66 SNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVI-KKR  111 (173)
T ss_dssp             HHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHH-HHH
T ss_pred             chHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHH-HHH
Confidence                  000000146677777665     35799999998865 444

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.11  E-value=1.4e-10  Score=118.09  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCcee-----eCcHHHHHHHcC-chhhhhhccChHHHHHHHHHHHHHH------h
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL-----STKELLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL------S  253 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-----D~D~lIE~~~g~-sI~ei~~~~Gee~FRelE~~vL~~L------~  253 (345)
                      +..|+|+|+|||||||+|+.||+.|++.++     +.|+++++..|. .+.++|...+++.|+..|..++..+      +
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L  114 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL  114 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999987775     559999888876 4678888889999987666543222      1


Q ss_pred             --cCCCEEE--EcCCCCCcccCcHHHHHHHh-cCc-EEEEEcC
Q 019172          254 --SHVRAVV--ATLGGQQGAAARADKWQHLY-AGF-TVWLSQT  290 (345)
Q Consensus       254 --~~~~~VI--AtGGG~~~avlr~~~r~~L~-~G~-VV~Ld~s  290 (345)
                        .....||  +++++   ...+...++.++ .|. ++||...
T Consensus       115 ~~~~g~~VIvDat~~~---~~~R~~~~~~a~~~g~~v~~l~~~  154 (520)
T 2axn_A          115 AKEGGQIAVFDATNTT---RERRHMILHFAKENDFKAFFIESV  154 (520)
T ss_dssp             HHSCCCEEEEESCCCS---HHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred             HhcCCceEEecCCCCC---HHHHHHHHHHHHHcCCeEEEEEEe
Confidence              3344555  45554   355666666665 464 6676653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.11  E-value=1.2e-10  Score=99.30  Aligned_cols=107  Identities=15%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHHHHcCchhhhhhccChH------HHHHHHH-----HHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSD------SVVNGEC-----DVLESL  252 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~~~g~sI~ei~~~~Gee------~FRelE~-----~vL~~L  252 (345)
                      +.|+|+|++||||||+++.|++.|   |++++++|+......|..+.+++.. |+-      .|...++     +++..+
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999   9999999864322233334444432 321      1222221     122233


Q ss_pred             hcCCCEEEEc----------CCCCCcccCcHHHHH----HHh----cCcEEEEEcChhhhchhh
Q 019172          253 SSHVRAVVAT----------LGGQQGAAARADKWQ----HLY----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       253 ~~~~~~VIAt----------GGG~~~avlr~~~r~----~L~----~G~VV~Ld~s~a~~~~~R  298 (345)
                      ......||+.          |++.   ........    ++.    .+.+|||++|+++. ..|
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~-~~R  139 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGK---GLDVEFIKNLNEFATRGVKPDITLLLDIPVDIA-LRR  139 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTT---CCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH-HHH
T ss_pred             HhCCCEEEECcchhHHHHHccccC---CCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHH-HHH
Confidence            3345567664          5442   23332222    222    36799999999865 444

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.11  E-value=8.2e-11  Score=102.83  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhhccChHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV  242 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~~~Gee~FR  242 (345)
                      +.|.|+|++||||||+++.||. +|++++|+|++..+..   +..+.++++..|++.|+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~   60 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILT   60 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC-
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhc
Confidence            3689999999999999999998 9999999999886643   23455666666665543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.10  E-value=3.1e-11  Score=104.45  Aligned_cols=51  Identities=14%  Similarity=0.153  Sum_probs=40.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHH-HHHHcCchhhhhhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQTIDSWMLA  235 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lI-E~~~g~sI~ei~~~  235 (345)
                      +++.|+|+|++||||||+++.||+.| |++++++++.. ....|..+.+++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~   55 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTR   55 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhc
Confidence            57889999999999999999999999 69999988654 33345556666654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.10  E-value=1.5e-10  Score=106.56  Aligned_cols=98  Identities=8%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc--------------------hhhhhh-ccChHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWML-AEGSDSVVNGEC  246 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s--------------------I~ei~~-~~Gee~FRelE~  246 (345)
                      .|+|+|++||||||+|+.||+.++++++++|++++. .|++                    ..++.+ ..+...|++.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~-~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCC-PQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGC-GGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhcc-CCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            588999999999999999999999999999997632 1211                    011122 356788988888


Q ss_pred             HHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHhc-----C---cEEEEEcCh-hh
Q 019172          247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA-----G---FTVWLSQTE-AM  293 (345)
Q Consensus       247 ~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~-----G---~VV~Ld~s~-a~  293 (345)
                      ..+ ++......||.+||+.   .   ..+..++.     +   .+|||+++. +.
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~---~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~  130 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSI---S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDA  130 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCH---H---HHHHHHHCTTTTSSCEEEEEECCCCCHHH
T ss_pred             HHH-HHHhCCCCeEEeccHH---H---HHHHHHhcccccccCceEEEEecchhHHH
Confidence            888 7665555566555531   1   22223322     2   689999987 53

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.09  E-value=4.3e-10  Score=117.53  Aligned_cols=108  Identities=15%  Similarity=0.101  Sum_probs=75.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHHHHcCchhhhhh-ccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~~~g~sI~ei~~-~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      .+++.|+|+|++||||||+|+.||+.|   |++++++|..+.. .++.....+. +.+++.||++. ++++.+......|
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR-~~L~~~~~fs~~dree~~r~i~-eva~~~l~~G~iV  127 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR-QGLNKNLGFSPEDREENVRRIA-EVAKLFADAGLVC  127 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT-TTTTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh-hccCccccCChhhhHHHHHHHH-HHHHHHHhCCCEE
Confidence            367789999999999999999999999   9999999865443 2444444444 57888898874 3555555444555


Q ss_pred             EEcCCCCCcccC---cHHHHHHHh-cC---cEEEEEcChhhhchhh
Q 019172          260 VATLGGQQGAAA---RADKWQHLY-AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       260 IAtGGG~~~avl---r~~~r~~L~-~G---~VV~Ld~s~a~~~~~R  298 (345)
                      |+. ++   .+.   ++.++++++ .|   .+|||+++.++. ..|
T Consensus       128 I~d-~~---s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl-~~R  168 (630)
T 1x6v_B          128 ITS-FI---SPYTQDRNNARQIHEGASLPFFEVFVDAPLHVC-EQR  168 (630)
T ss_dssp             EEE-CC---CCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHH-HHH
T ss_pred             EEe-Cc---hhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHH-HHH
Confidence            544 32   133   556666665 34   399999999876 444

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.09  E-value=1.7e-10  Score=101.96  Aligned_cols=53  Identities=15%  Similarity=0.139  Sum_probs=41.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhhccChH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSD  239 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~~~Gee  239 (345)
                      ++.|+|+|++||||||+++.||+ +|++++|+|+++.+..   +..+.++++..|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~   59 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGAN   59 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHH
Confidence            56799999999999999999999 9999999999987754   23445555444443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.08  E-value=8.2e-10  Score=96.04  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCc----hhhhhhccChHHHHHHHHHHHHH-----H
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQT----IDSWMLAEGSDSVVNGECDVLES-----L  252 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~s----I~ei~~~~Gee~FRelE~~vL~~-----L  252 (345)
                      +.+.|+|+|++||||||+++.||+.+|++++|+|+++++..   |..    +.+++. +|+..+++.+..++.+     +
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l   92 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV   92 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence            34679999999999999999999999999999999987753   333    333433 4554444444433322     2


Q ss_pred             hcCCCEEEEcCCCCCcccCcHHHHHHH----h-cCcEEEEEcChhhh
Q 019172          253 SSHVRAVVATLGGQQGAAARADKWQHL----Y-AGFTVWLSQTEAMG  294 (345)
Q Consensus       253 ~~~~~~VIAtGGG~~~avlr~~~r~~L----~-~G~VV~Ld~s~a~~  294 (345)
                      ..+.+.+|-.|-     ....+....+    . .+.+|||++|+++.
T Consensus        93 ~~g~~~~i~dg~-----~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~  134 (203)
T 1ukz_A           93 KANKHKFLIDGF-----PRKMDQAISFERDIVESKFILFFDCPEDIM  134 (203)
T ss_dssp             HTTCCEEEEETC-----CCSHHHHHHHHHHTCCCSEEEEEECCHHHH
T ss_pred             ccCCCeEEEeCC-----CCCHHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence            333234443333     1222222222    2 36799999999765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.07  E-value=3.8e-10  Score=104.12  Aligned_cols=106  Identities=11%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHHHHcCchh---hhhhccChHHHHHHHHHHHHHHh---cCCCEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTID---SWMLAEGSDSVVNGECDVLESLS---SHVRAV  259 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~~~g~sI~---ei~~~~Gee~FRelE~~vL~~L~---~~~~~V  259 (345)
                      +.|+|+|++||||||+|+.|++.+ |+.++|+|.+.+...+++..   .+. ..++..+.+...+++....   .....|
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~v   81 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYT-KKKEGIVTGMQFDTAKSILYGGDSVKGV   81 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CC-HHHHHHHHHHHHHHHHHHTTSCTTCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccc-hhhhhHHHHHHHHHHHHHHhhccCCCEE
Confidence            469999999999999999999985 99999999877766553221   121 2233344443344455554   444556


Q ss_pred             EEcCCCCCcccCcHHHHHHHh-----cC---cEEEEEcChhhhchhhh
Q 019172          260 VATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTEAMGKLLRV  299 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~~~~Rv  299 (345)
                      |..|..     .....++.+.     .|   .+|||+++.++. ..|.
T Consensus        82 i~d~~~-----~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~-~~R~  123 (301)
T 1ltq_A           82 IISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTEL-VKRN  123 (301)
T ss_dssp             EECSCC-----CCHHHHHHHHHHHHHTTCEEEEEECCCCHHHH-HHHH
T ss_pred             EEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEEEECCHHHH-HHHH
Confidence            655542     4444444432     24   689999988765 4443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.07  E-value=2.8e-10  Score=97.53  Aligned_cols=107  Identities=15%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHHHHcCchhh-hhhccChHHHHHHHHHHHHHHhcCCCEEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDS-WMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~~~g~sI~e-i~~~~Gee~FRelE~~vL~~L~~~~~~VI  260 (345)
                      +++.|+|+|++||||||+++.|++.|   |++++++|...... +..... +...++++.|++++... ..+.. .+.++
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~   80 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-GLNKNLGFSPEDREENVRRIAEVA-KLFAD-AGLVC   80 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHHHHHHHH-HHHHH-TTCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-HHhhccccccccHHHHHHHHHHHH-HHHHH-CCCEE
Confidence            57889999999999999999999998   99999776544321 111111 12235667787776422 22223 23333


Q ss_pred             EcCCCCCcccC---cHHHHHHHh-cC---cEEEEEcChhhhchhh
Q 019172          261 ATLGGQQGAAA---RADKWQHLY-AG---FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       261 AtGGG~~~avl---r~~~r~~L~-~G---~VV~Ld~s~a~~~~~R  298 (345)
                       ++++.+  +.   +..+++.++ .|   .+|||++|+++. ..|
T Consensus        81 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~-~~R  121 (179)
T 2pez_A           81 -ITSFIS--PYTQDRNNARQIHEGASLPFFEVFVDAPLHVC-EQR  121 (179)
T ss_dssp             -EEECCC--CCHHHHHHHHHHHHHTTCCEEEEEEECCHHHH-HHH
T ss_pred             -EEecCC--cchHHHHHHHHHhhccCCCeEEEEEeCCHHHH-HHH
Confidence             344431  22   344455554 45   689999999866 444

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.04  E-value=5.5e-12  Score=111.08  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~  223 (345)
                      +++.|+|+|++||||||+|+.||+.+|++++|+|+++++
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~   40 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA   40 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence            457899999999999999999999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=99.04  E-value=1.2e-10  Score=112.90  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc--------------------hhhhhhccChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s--------------------I~ei~~~~Gee~FRelE~  246 (345)
                      +.|+|+|++||||||+|+.||+.++..+|++|.++... |++                    +.++++..++..|++.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~   84 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL   84 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence            47999999999999999999999999999999975322 333                    345667789999999999


Q ss_pred             HHHHHHhcCCCEEEEcCCC
Q 019172          247 DVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       247 ~vL~~L~~~~~~VIAtGGG  265 (345)
                      ++++++...++.+|.+||+
T Consensus        85 ~~i~~i~~~g~~~IlvGGt  103 (323)
T 3crm_A           85 AAMAKATARGRIPLLVGGT  103 (323)
T ss_dssp             HHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHHcCCeEEEECCc
Confidence            9999988878888888886

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.04  E-value=3.6e-10  Score=96.03  Aligned_cols=39  Identities=10%  Similarity=-0.013  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~  225 (345)
                      +.|+|+|++||||||+++.|++.|+     +.++++|+++.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            4699999999999999999999998     89999999887655

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.00  E-value=1.6e-10  Score=105.12  Aligned_cols=38  Identities=18%  Similarity=0.166  Sum_probs=34.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc----------eeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~----------fID~D~lIE  222 (345)
                      +...|.|+|++||||||+|+.||+.||++          ++|+|+++.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            34679999999999999999999999998          799999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.96  E-value=2.2e-09  Score=100.89  Aligned_cols=109  Identities=8%  Similarity=0.042  Sum_probs=68.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh--CCceeeCcHHHHHHHcC-----chhhhhhccChHHHHHHHHHHHHHHh-cC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQ-----TIDSWMLAEGSDSVVNGECDVLESLS-SH  255 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L--g~~fID~D~lIE~~~g~-----sI~ei~~~~Gee~FRelE~~vL~~L~-~~  255 (345)
                      ..++.|+|+|+|||||||+++.|++.+  ++.+||+|.+.....+.     ...++.......++..+...+++++. .+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g  110 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQG  110 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcC
Confidence            346789999999999999999999999  89999999875322110     01111111113455665555666544 44


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHh-cCc---EEEEEcChhhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLY-AGF---TVWLSQTEAMG  294 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~-~G~---VV~Ld~s~a~~  294 (345)
                      .++||.+..+.  +..+...++.++ .|.   ++|+.+|+++.
T Consensus       111 ~~vIld~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~  151 (287)
T 1gvn_B          111 YNLVIEGTGRT--TDVPIQTATMLQAKGYETKMYVMAVPKINS  151 (287)
T ss_dssp             CCEEECCCCCC--SHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred             CeEEEECCCCC--HHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence            56677544431  222445566665 453   68899998866

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.95  E-value=2.8e-09  Score=97.13  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-HhcC--
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSSH--  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~~--  255 (345)
                      +++.|+|+|++||||||+++.|++.+|++++++|+++.+..      |..+.+++.. |...-.+.-..++.+ +...  
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~  106 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTPQC  106 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcccc
Confidence            57889999999999999999999999999999999988753      2233344433 221111111223322 2221  


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHH----Hh-----cCcEEEEEcChhhhchhhhhhhc
Q 019172          256 VRAVVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAMGKLLRVFVLS  303 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~----L~-----~G~VV~Ld~s~a~~~~~Rv~v~~  303 (345)
                      ...+|..|-     +........    +.     -..+|||++|+++. ..|..-+.
T Consensus       107 ~~~~ildg~-----p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~-~~Rl~~R~  157 (243)
T 3tlx_A          107 KKGFILDGY-----PRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL-VNRISGRL  157 (243)
T ss_dssp             SSEEEEESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-HHHHHTEE
T ss_pred             cCCEEecCC-----CCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHH-HHHHHcCC
Confidence            334554442     233332332    21     25799999999865 55544333

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.95  E-value=8e-10  Score=113.65  Aligned_cols=110  Identities=15%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC------CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg------~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~  257 (345)
                      .++..|+|+|++|||||||++.||..|+      +.++|+|++.+.. +..+. +-..+++++++.+ ..+++.+....+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l-~~~l~-f~~~~r~~~~r~i-~~v~q~l~~~~~  443 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL-SSELG-FSKAHRDVNVRRI-GFVASEITKNRG  443 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT-TSSCC-CSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh-ccccC-CCHHHHHHHHHHH-HHHHHHHHhcCC
Confidence            3678999999999999999999999995      5689999987642 22222 1122344556554 556666666677


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh-cC--cEEEEEcChhhhchhh
Q 019172          258 AVVATLGGQQGAAARADKWQHLY-AG--FTVWLSQTEAMGKLLR  298 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~-~G--~VV~Ld~s~a~~~~~R  298 (345)
                      .||+++++. ....++.+++.|+ .|  .+|||+++.++. ..|
T Consensus       444 ivi~~~~~~-~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~-~~R  485 (552)
T 3cr8_A          444 IAICAPIAP-YRQTRRDVRAMIEAVGGFVEIHVATPIETC-ESR  485 (552)
T ss_dssp             EEEECCCCC-CHHHHHHHHHHHHTTSEEEEEEECC---------
T ss_pred             EEEEecCCc-cHHHHHHHHHHHHHcCCEEEEEEcCCHHHH-HHh
Confidence            888877641 1356777888887 47  899999998765 344

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.93  E-value=4.8e-09  Score=95.87  Aligned_cols=147  Identities=12%  Similarity=0.041  Sum_probs=93.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhhccChHHHH--------------------
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV--------------------  242 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~~~Gee~FR--------------------  242 (345)
                      -+-|-|+|.+||||||++++|++ +|++++|+|.+..+..   +..+.++++..|++.|.                    
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            46799999999999999999998 9999999999887765   45677888877877652                    


Q ss_pred             --HHHH--------HHHHHHhc-CCCEEEEcCCCCCcccCcH-HHHHHHhcCcEEEEEcChhhhchhhhhhhcc------
Q 019172          243 --NGEC--------DVLESLSS-HVRAVVATLGGQQGAAARA-DKWQHLYAGFTVWLSQTEAMGKLLRVFVLSL------  304 (345)
Q Consensus       243 --elE~--------~vL~~L~~-~~~~VIAtGGG~~~avlr~-~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~------  304 (345)
                        .+|.        ++.+.+.. ....||.-..     .+-+ ..+.. .-+.+|||++|+++. ..|...++.      
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~p-----LL~E~~~~~~-~~D~vi~V~ap~e~r-~~Rl~~Rdg~s~eea  160 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVP-----LLVESRNWKA-RCDRVLVVDCPVDTQ-IARVMQRNGFTREQV  160 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECT-----TCTTCHHHHH-HCSEEEEEECCHHHH-HHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEe-----cccccCCccc-cCCeEEEEECCHHHH-HHHHHhcCCCCHHHH
Confidence              1111        11222222 2334554433     3444 33432 258899999999865 344332211      


Q ss_pred             -----ccccccccceeeeeeccCC-CChHHHhhhcchhhhhh
Q 019172          305 -----HLRSVTSYFVRLEFVSSFS-RTNEHIMARKPAVMKTL  340 (345)
Q Consensus       305 -----h~R~~~~~~~~le~i~~~~-r~~~~~~~~~~~~~~~~  340 (345)
                           .+++.........+|.+=+ .+.|++.+.=-.+++.+
T Consensus       161 ~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          161 EAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRY  202 (210)
T ss_dssp             HHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence                 1223333334566778878 78888887655555544

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.93  E-value=3e-09  Score=98.57  Aligned_cols=122  Identities=14%  Similarity=0.071  Sum_probs=81.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHH-Hhc---
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES-LSS---  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~-L~~---  254 (345)
                      -.+.+-|+|++||||||+++.||+.+|+++|++|+++.+.      .|..+.+++. .|.....++..+++++ |.+   
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~   85 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADC   85 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGG
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCccc
Confidence            4578999999999999999999999999999999998875      2344556655 3665566666555544 332   


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh-c----CcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY-A----GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV  314 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~  314 (345)
                      ..++|+ .|  +   +-+....+.|. .    ..||||++|.++. ..|..-+..+.-....|+.
T Consensus        86 ~~g~IL-DG--f---PRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l-~~Rl~~R~~~~~~G~~Yh~  143 (230)
T 3gmt_A           86 ANGYLF-DG--F---PRTIAQADAMKEAGVAIDYVLEIDVPFSEI-IERMSGRRTHPASGRTYHV  143 (230)
T ss_dssp             TTCEEE-ES--C---CCSHHHHHHHHHTTCCCSEEEEECCCHHHH-HHHHHTEEEETTTTEEEET
T ss_pred             CCCeEe-cC--C---CCcHHHHHHHHHhCCCccEEEEEeCCHHHH-HHHHHcCCcccccCCcccc
Confidence            234554 33  2   55555555554 2    4799999999876 5664444444444444443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.92  E-value=2.9e-11  Score=108.95  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=37.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~  223 (345)
                      ..+..|.|+|++||||||+++.||+.||++++|+|+++..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~   53 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   53 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence            3578899999999999999999999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.92  E-value=4e-09  Score=98.53  Aligned_cols=39  Identities=23%  Similarity=0.085  Sum_probs=34.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      .+.|.|+|++||||||+|+.|+ .+|+++||+|++..+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~  113 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY  113 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence            4579999999999999999999 69999999999866543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.91  E-value=2e-09  Score=106.02  Aligned_cols=89  Identities=19%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      ++.|+|+|+|||||||+|+.|++.+|+.+||.|++-                  .++.+...+.+.+..+..+||.+.++
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~~~~  319 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------------SWQRCVSSCQAALRQGKRVVIDNTNP  319 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------------SHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------------HHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence            567999999999999999999999999999999961                  24555555666666666677766553


Q ss_pred             CCcccCcHHHHHHHh-cC---cEEEEEcChhhh
Q 019172          266 QQGAAARADKWQHLY-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~  294 (345)
                      .  ...+...++.++ .|   .+|||+++.++.
T Consensus       320 ~--~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l  350 (416)
T 3zvl_A          320 D--VPSRARYIQCAKDAGVPCRCFNFCATIEQA  350 (416)
T ss_dssp             S--HHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred             C--HHHHHHHHHHHHHcCCeEEEEEEeCCHHHH
Confidence            1  233444444444 34   589999998755

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.89  E-value=5.1e-09  Score=94.50  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cC----chhhhhhccChHHHHHHHHHHHHHHhcCCCEEE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQ----TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~----sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VI  260 (345)
                      |.|+|+|+|||||+|+|+.||+.+|+++|++.+++.+..  +.    .+.+++. .|.-.=-++-..++++.....+.+|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYME-RGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHh-cCCcCCHHHHHHHHHHhhccCCceE
Confidence            679999999999999999999999999999999987643  22    2223322 2322222233344444333333444


Q ss_pred             EcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhccc
Q 019172          261 ATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLSLH  305 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h  305 (345)
                      -.|-     +-+....+.|    . .    ..||+|++|.+.. ..|..-++.+
T Consensus        80 lDGf-----PRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l-~~Rl~~R~~~  127 (206)
T 3sr0_A           80 FDGF-----PRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV-IERLSGRRIN  127 (206)
T ss_dssp             EESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-HHHHHTEEEC
T ss_pred             ecCC-----chhHHHHHHHHhhHHHhccccceeeecCCCHHHH-HHHHhCCccc
Confidence            4443     5554444433    2 2    4699999999876 4454444333

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.88  E-value=7e-11  Score=116.16  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCce--------------------eeCcHHHHHHHcCchhhhhhccChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTP--------------------LSTKELLETFAKQTIDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f--------------------ID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~  246 (345)
                      .+|+|+|+||+||||+|+.||..|+++|                    +|+|+.|++..|+++.++|+..|| .||+.|.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~if~~~ge-~fr~~E~  103 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGL-FKDHVED  103 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHHHHTTTC-CGGGTTC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHHHHHhcc-cchHHHh
Confidence            4699999999999999999999999999                    999999999999999999999999 9999998


Q ss_pred             HHHH
Q 019172          247 DVLE  250 (345)
Q Consensus       247 ~vL~  250 (345)
                      ..++
T Consensus       104 ~~~~  107 (359)
T 2ga8_A          104 VNFQ  107 (359)
T ss_dssp             TTCC
T ss_pred             hhcc
Confidence            6654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.88  E-value=4.5e-09  Score=90.50  Aligned_cols=106  Identities=14%  Similarity=0.013  Sum_probs=59.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      +++.|+|+|++||||||+++.||+.|+     +.++|.|.+.+...+. . .+...+.+..++.+. .+.+.+......|
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~~r~~~~~~~~-~~~~~~~~~g~~v   88 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEG-A-GFTREERLRHLKRIA-WIARLLARNGVIV   88 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTT-C-CCCHHHHHHHHHHHH-HHHHHHHTTTCEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhc-c-CCChhhHHHHHHHHH-HHHHHHHhCCCEE
Confidence            577899999999999999999999986     4678988874432221 0 010111111222111 1222333434445


Q ss_pred             EEcCCCCCcccCcHHHHHHHhc----CcEEEEEcChhhh
Q 019172          260 VATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAMG  294 (345)
Q Consensus       260 IAtGGG~~~avlr~~~r~~L~~----G~VV~Ld~s~a~~  294 (345)
                      |+ +++......++..++.+..    +.+|||++|+++.
T Consensus        89 i~-d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~  126 (186)
T 2yvu_A           89 IC-SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEV  126 (186)
T ss_dssp             EE-ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHH
T ss_pred             EE-eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHH
Confidence            54 3331000123344444442    4799999998865

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=98.88  E-value=3.5e-09  Score=88.77  Aligned_cols=93  Identities=22%  Similarity=0.426  Sum_probs=78.2

Q ss_pred             CCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeeccc-ce
Q 019172           75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QL  153 (345)
Q Consensus        75 ~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~-~~  153 (345)
                      -+.+++|.|+|+..||.++|+||.....+++++.|++...+|+|++++..   .+|+ ..||..|.|.++.|.+++. .+
T Consensus        13 G~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~---~~~~-g~L~~~I~~deS~w~i~~~~~i   88 (121)
T 3qor_A           13 GADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQP---AIID-GELYNEVKVEESSWLIADGAVV   88 (121)
T ss_dssp             SCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSC---CSEE-EEBSSCBCGGGCEEEEETTTEE
T ss_pred             CCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcc---eEEe-ccccccccccccEEEEcCCCEE
Confidence            34567999999999999999999855567899999999999999998753   3566 8999999999999999986 78


Q ss_pred             eehccccCCCCCcchhHh
Q 019172          154 VINLKKQDPELKWPDIVE  171 (345)
Q Consensus       154 ~~~~k~~~~~~~~~~~~~  171 (345)
                      .+.++|.....-|+.+..
T Consensus        89 ~i~L~K~~~~~~W~~L~~  106 (121)
T 3qor_A           89 TVHLEKINKMEWWSRLVS  106 (121)
T ss_dssp             EEEEEBSSSSCCCSCSBT
T ss_pred             EEEEEECCCCCCChhhhc
Confidence            899988776666777643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.85  E-value=5e-09  Score=92.15  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ++.|.|+|++||||||+++.||+.+|++++|+|+++.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            467999999999999999999999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.85  E-value=8.1e-09  Score=102.82  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH-----HHHHHHcC-chhhhhhccChHHHHHHHHHHHHHH------
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE-----LLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL------  252 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~-----lIE~~~g~-sI~ei~~~~Gee~FRelE~~vL~~L------  252 (345)
                      .+..|+|+|+|||||||+|+.||+.|++.++|+|.     +.++..|. ...++++..|++.|+..|..++..+      
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999988877776     66777776 4557889999988887777644333      


Q ss_pred             h--cCCCEEEEcCCCCCcccCcHHHHHHH----h-cC-cEEEEEc
Q 019172          253 S--SHVRAVVATLGGQQGAAARADKWQHL----Y-AG-FTVWLSQ  289 (345)
Q Consensus       253 ~--~~~~~VIAtGGG~~~avlr~~~r~~L----~-~G-~VV~Ld~  289 (345)
                      .  .....||....     ..+.+.|+.+    + .| .+|||+.
T Consensus       118 l~~~~G~~vV~D~t-----n~~~~~R~~~~~~~~~~~~~vv~l~~  157 (469)
T 1bif_A          118 LSEEGGHVAVFDAT-----NTTRERRAMIFNFGEQNGYKTFFVES  157 (469)
T ss_dssp             HHTTCCSEEEEESC-----CCSHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHhCCCCEEEEeCC-----CCCHHHHHHHHHHHHhcCCcEEEEEE
Confidence            1  22334443333     2345555544    3 35 5888883

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.83  E-value=1.9e-08  Score=91.97  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccCh----HHHHHHHHHHHHHHhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGS----DSVVNGECDVLESLSS  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Ge----e~FRelE~~vL~~L~~  254 (345)
                      +.+.|+|+|+|||||+|+|+.||+.+|+++|++.+++.+...      ..+.+++. .|.    +..-++-.+.+.+...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence            456788899999999999999999999999999999876542      22333332 232    2233333333334333


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~  294 (345)
                      ..+.+|-.|-     +-+......|.     -+.||+|+++.++.
T Consensus       107 ~~~g~ilDGf-----PRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~  146 (217)
T 3umf_A          107 KNCHFLIDGY-----PRELDQGIKFEKEVCPCLCVINFDVSEEVM  146 (217)
T ss_dssp             TCSEEEEETB-----CSSHHHHHHHHHHTCCCSEEEEEECCHHHH
T ss_pred             cccCcccccC-----CCcHHHHHHHHHhCCccCEEEeccCCHHHH
Confidence            3445554442     55555555553     26799999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.83  E-value=1.6e-08  Score=87.34  Aligned_cols=32  Identities=19%  Similarity=0.017  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc--eee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT--PLS  216 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~--fID  216 (345)
                      +++.|+|+|++||||||+++.||+.|+..  +++
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~   36 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL   36 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence            56789999999999999999999999884  665

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.82  E-value=5e-09  Score=89.91  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      +.|+|+|++||||||+++.||+.|++.+++
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            469999999999999999999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.81  E-value=2.3e-09  Score=93.21  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      +++.|+|+|++||||||+++.||+.|+..+++.|.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~   43 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   43 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            578899999999999999999999988776665443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.81  E-value=9.8e-09  Score=88.72  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=34.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      .|.|+|++||||||+|+.||+.||++++|.|++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence            7999999999999999999999999999999998664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.80  E-value=7.8e-09  Score=94.65  Aligned_cols=39  Identities=18%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~  223 (345)
                      .+..|.|+|++||||||+++.||+.||+.++|.|+++..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            467899999999999999999999999999999999844

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=98.78  E-value=1.2e-08  Score=86.18  Aligned_cols=92  Identities=21%  Similarity=0.437  Sum_probs=77.8

Q ss_pred             CCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeeccc-cee
Q 019172           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLV  154 (345)
Q Consensus        76 ~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~-~~~  154 (345)
                      +.+++|.|+|+..||.++|+||..+..+++++.|++...+|.|++++..   .+++ ..||..|.|.++.|.+.+. .+.
T Consensus         5 ~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~---~~~~-~~L~~~I~~e~s~w~i~~~k~v~   80 (131)
T 1wfi_A            5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQP---PVVD-GELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSC---CSBC-SCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCce---EEEe-cccccccccccCEEEEcCCCEEE
Confidence            3467999999999999999999755577899999999999999997653   3455 8999999999999999887 699


Q ss_pred             ehccccCCCCCcchhHh
Q 019172          155 INLKKQDPELKWPDIVE  171 (345)
Q Consensus       155 ~~~k~~~~~~~~~~~~~  171 (345)
                      +.++|......|+.+..
T Consensus        81 i~L~K~~~~~~W~~L~~   97 (131)
T 1wfi_A           81 VHLEKINKMEWWNRLVT   97 (131)
T ss_dssp             EEEEBSSSCCCCSCSBS
T ss_pred             EEEEECCCCCCChhhhc
Confidence            99999776567777653

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=98.74  E-value=2.5e-08  Score=83.52  Aligned_cols=92  Identities=21%  Similarity=0.423  Sum_probs=75.6

Q ss_pred             CCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc-ee
Q 019172           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-LV  154 (345)
Q Consensus        76 ~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~-~~  154 (345)
                      +.+++|.|+|+..||.++|+||.. +.+++++.|++...+|.|++++......+++ ..||..|.|.++.|.+++.. +.
T Consensus        17 ~~~~~y~W~Qt~~~V~i~I~lp~~-~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~e~S~w~i~~~k~v~   94 (124)
T 1wgv_A           17 AVRENYTWSQDYTDLEVRVPVPKH-VVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVL   94 (124)
T ss_dssp             BCCSSCEEEEETTEEEEEEECCTT-CCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEE
T ss_pred             CcCCcEEEEEcccEEEEEEEcCCC-CCchhheEEEEEcCEEEEEEEccCCCceEEc-ccccCcCCCcCCEEEEeCCCEEE
Confidence            346699999999999999999952 3368999999999999999986444445666 89999999999999998876 89


Q ss_pred             ehccccCCCCCcchhH
Q 019172          155 INLKKQDPELKWPDIV  170 (345)
Q Consensus       155 ~~~k~~~~~~~~~~~~  170 (345)
                      +.|+|... .-|+.+.
T Consensus        95 i~L~K~~~-~~W~~L~  109 (124)
T 1wgv_A           95 VNLSKVGE-YWWNAIL  109 (124)
T ss_dssp             EEECBSSS-CCCSCSB
T ss_pred             EEEEECCC-CCCcCcc
Confidence            99988753 4677654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.72  E-value=1.9e-08  Score=87.96  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE  222 (345)
                      .+..|.|+|++||||||+++.|++.+ ++.+++.|+++.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~   58 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK   58 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence            35678899999999999999999999 899999999865

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=8.2e-08  Score=80.73  Aligned_cols=96  Identities=13%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             CCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeeh
Q 019172           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        77 ~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      ..++|.|.|+..+|.+.|++++.+....+++.|++...+|.|.+.......-.++-..||..|.|.++.|.+++..+.|.
T Consensus        19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~   98 (127)
T 1x5m_A           19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLIL   98 (127)
T ss_dssp             ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEE
T ss_pred             CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEE
Confidence            34589999999999999999985444678999999999999999765545556775579999999999999999999999


Q ss_pred             ccccCCCCCcchhHhh
Q 019172          157 LKKQDPELKWPDIVES  172 (345)
Q Consensus       157 ~k~~~~~~~~~~~~~~  172 (345)
                      |+|.+.+..|+.+...
T Consensus        99 L~K~~~~~~W~~L~~~  114 (127)
T 1x5m_A           99 CRKKVENTRWDYLTQV  114 (127)
T ss_dssp             EECSSSSCCCSSSBHH
T ss_pred             EEECCCCCCCCccccc
Confidence            9998876688887543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.71  E-value=5.6e-08  Score=87.71  Aligned_cols=103  Identities=11%  Similarity=0.024  Sum_probs=62.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHH-HHHhc--C
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS--H  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL-~~L~~--~  255 (345)
                      ++..|+|+|++||||||+++.||+.+|+..++.|+++....      |..+..+++. |.........+.+ ..+..  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~v~~~l~~~l~~~~~  104 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEK-SLLVPDHVITRLMMSELENRRG  104 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999999876532      2223333332 3222222222222 22332  2


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHH---h-cCcEEEEEcChhhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHL---Y-AGFTVWLSQTEAMG  294 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L---~-~G~VV~Ld~s~a~~  294 (345)
                      ..+|+ .|..     ......+.+   . -+.+|||++++++.
T Consensus       105 ~~~il-~g~~-----~~~~~~~~l~~~~~~~~vi~L~~~~~~~  141 (246)
T 2bbw_A          105 QHWLL-DGFP-----RTLGQAEALDKICEVDLVISLNIPFETL  141 (246)
T ss_dssp             SCEEE-ESCC-----CSHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             CeEEE-ECCC-----CCHHHHHHHHhhcCCCEEEEEECCHHHH
Confidence            33444 3322     222222222   2 47899999998865

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=98.70  E-value=2.2e-08  Score=87.72  Aligned_cols=89  Identities=18%  Similarity=0.352  Sum_probs=75.1

Q ss_pred             CCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc-e
Q 019172           75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-L  153 (345)
Q Consensus        75 ~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~-~  153 (345)
                      +..+++|.|+|+..||.++|+||.  ..+++++.|++...+|.|++++.    ++|+ ..||..|.|.++.|.+.+.. +
T Consensus        10 ~~~~~~y~W~Qt~~eV~v~I~lp~--~~~~kdv~V~i~~~~L~v~~kg~----~~l~-g~L~~~I~~eeS~w~i~~~k~v   82 (157)
T 2rh0_A           10 PCGTPWGQWYQTLEEVFIEVQVPP--GTRAQDIQCGLQSRHVALAVGGR----EILK-GKLFDSTIADEGTWTLEDRKMV   82 (157)
T ss_dssp             CEECSSEEEEECSSEEEEEEECCT--TCCGGGEEEEECSSEEEEEETTE----EEEE-EEBSSCBCGGGCEEEEECCCEE
T ss_pred             cCCCCcEEEEecCCEEEEEEECCC--CCcccceEEEEecCEEEEEECCE----EEEe-eccccccCccccEEEEcCCcEE
Confidence            446779999999999999999986  25688999999999999999865    3566 89999999999999999876 8


Q ss_pred             eehccccCC--CCCcchhH
Q 019172          154 VINLKKQDP--ELKWPDIV  170 (345)
Q Consensus       154 ~~~~k~~~~--~~~~~~~~  170 (345)
                      .|.++|...  ...|+.+.
T Consensus        83 ~I~L~K~~~~~~~~W~~L~  101 (157)
T 2rh0_A           83 RIVLTKTKRDAANCWTSLL  101 (157)
T ss_dssp             EEEEEBSSCSTTCCCSEEE
T ss_pred             EEEEEEcCCCcCCcChhhh
Confidence            899988765  45676654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.70  E-value=1.5e-08  Score=98.89  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGECD  247 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE~~  247 (345)
                      ..|+|+|++||||||+|+.||+.++..+|++|.+              .++..|.+     +.+..+..+...|++.+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~   87 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK   87 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            4689999999999999999999999999999997              23333322     3333446677889998888


Q ss_pred             HHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEE-cChh
Q 019172          248 VLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEA  292 (345)
Q Consensus       248 vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld-~s~a  292 (345)
                      .+.++....+.||.+||+.       -+.+.+..|..+|++ .+.+
T Consensus        88 ~i~~i~~~g~~~IlvGGt~-------ly~~~l~~~l~~~~~~~d~~  126 (340)
T 3d3q_A           88 YIKDITRRGKVPIIAGGTG-------LYIQSLLYNYAFEDESISED  126 (340)
T ss_dssp             HHHHHHHTTCEEEEECCCH-------HHHHHHHBCSCCC---CCHH
T ss_pred             HHHHHHhCCCcEEEECChh-------hhHHHHHhcccccCCCCChH
Confidence            8888876677788888851       244455566657777 5554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.70  E-value=1.2e-08  Score=88.71  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      +++.|+|+|++||||||+++.||+.|+.+++++|.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~   43 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH   43 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence            47889999999999999999999999988887753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.69  E-value=6.8e-09  Score=91.19  Aligned_cols=26  Identities=8%  Similarity=0.082  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .++.|+|+|++||||||+++.|++.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            57889999999999999999999998

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.69  E-value=2.5e-08  Score=85.86  Aligned_cols=105  Identities=10%  Similarity=-0.084  Sum_probs=58.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC-ceeeCcHHHHHHHcCchhhhh-hccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY-TPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~-~fID~D~lIE~~~g~sI~ei~-~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      ..|+|+|++||||||+++.|+..++. .++|.|++.+......+.++. ...+...++.++..+...+......|+....
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~~~   82 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIA   82 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEeecc
Confidence            46889999999999999999998876 899999876532211222221 1112233444443322222233344555322


Q ss_pred             CCCcccCcHHHHHHHh------cCcEEEEEcChhhh
Q 019172          265 GQQGAAARADKWQHLY------AGFTVWLSQTEAMG  294 (345)
Q Consensus       265 G~~~avlr~~~r~~L~------~G~VV~Ld~s~a~~  294 (345)
                      +   .......++.++      ...+|||+.+.+..
T Consensus        83 ~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l  115 (189)
T 2bdt_A           83 F---PDEAEALAQTVQAKVDDVEIRFIILWTNREEL  115 (189)
T ss_dssp             C---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHH
T ss_pred             C---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHH
Confidence            2   122233344443      12368899888754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.63  E-value=5e-08  Score=100.56  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC----Cc--eeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~--fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      +++.|+|+|++||||||+|+.|++.|+    ++  ++|.|.+.....+ ... +-..+..+.++.+ .++++.+......
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~-~~~-f~~~er~~~i~ri-~~v~~~~~~~g~~  471 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS-ELG-FTREDRHTNIQRI-AFVATELTRAGAA  471 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT-TCC-CSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc-ccC-CChhHHHHHHHHH-HHHHHHHHhCCCE
Confidence            467899999999999999999999987    44  5555654332111 000 0011111122221 1355566555666


Q ss_pred             EEEcCCCCCcccCcHHHHHHHhc-C--cEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~~-G--~VV~Ld~s~a~~  294 (345)
                      ||++.-... ...+..+++.++. |  .+|||+++.++.
T Consensus       472 VI~~~is~~-~~~R~~~r~l~~~~g~~~~V~Lda~~ev~  509 (573)
T 1m8p_A          472 VIAAPIAPY-EESRKFARDAVSQAGSFFLVHVATPLEHC  509 (573)
T ss_dssp             EEEECCCCC-HHHHHHHHHHHHTTSEEEEEEECCCHHHH
T ss_pred             EEEEcCCCc-HHHHHHHHHHHHhcCCeEEEEEeCCHHHH
Confidence            776533100 0123445555553 6  799999998865

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=98.58  E-value=3.8e-08  Score=83.27  Aligned_cols=87  Identities=17%  Similarity=0.368  Sum_probs=71.3

Q ss_pred             CCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeeh
Q 019172           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        77 ~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      .+++|.|+|+..||.++|+||.  ...++++.|++...+|.|++++..    +++ ..||..|.|.++.|.+.+..+.+.
T Consensus         3 ~~~~y~W~Qt~~~V~i~I~lp~--~~~~kdv~V~i~~~~l~v~~~g~~----~~~-~~L~~~I~~e~S~w~i~~~kv~i~   75 (131)
T 2o30_A            3 SEAKYTWDQELNEINIQFPVTG--DADSSAIKIRMVGKKICVKNQGEI----VID-GELLHEVDVSSLWWVINGDVVDVN   75 (131)
T ss_dssp             --CCCEEEEETTEEEEEEECC-----CCSCEEEEEETTEEEEEETTEE----EEE-EEBSSCEEEEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEecCCEEEEEEECCC--CCCccceEEEEECCEEEEEECCEe----eEc-cccccccccccCEEEEeCCEEEEE
Confidence            4679999999999999999975  246889999999999999987542    566 899999999999999999889999


Q ss_pred             ccccCCCCCcchhHh
Q 019172          157 LKKQDPELKWPDIVE  171 (345)
Q Consensus       157 ~k~~~~~~~~~~~~~  171 (345)
                      ++|. ...-|+.+..
T Consensus        76 L~K~-~~~~W~~L~~   89 (131)
T 2o30_A           76 VTKK-RNEWWDSLLV   89 (131)
T ss_dssp             EEES-SCCCCSCSBC
T ss_pred             EEEC-CCCCCccccC
Confidence            9887 4455787754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.52  E-value=2.5e-07  Score=83.94  Aligned_cols=33  Identities=21%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~  217 (345)
                      .++.|+|.|++||||||+++.|++.|+  +.++.+
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~   59 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT   59 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence            578899999999999999999999996  566654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.52  E-value=9.3e-08  Score=97.71  Aligned_cols=90  Identities=13%  Similarity=0.046  Sum_probs=59.7

Q ss_pred             hhHHHHHHhhh-hhcCCceEEEEcCCCCChHHHHHHHHHhhCC-------ceeeCcHHHHHHHcCchhhhhhccChHHHH
Q 019172          171 ESWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKELLETFAKQTIDSWMLAEGSDSVV  242 (345)
Q Consensus       171 ~~~~~l~a~~~-~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~-------~fID~D~lIE~~~g~sI~ei~~~~Gee~FR  242 (345)
                      +.|+.+.+... ..-+++.|+|+|+|||||||||+.||++|+.       .|+|+|.  .       .+       -   
T Consensus       379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~-------~e-------i---  439 (511)
T 1g8f_A          379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K-------TE-------L---  439 (511)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C-------HH-------H---
T ss_pred             hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c-------HH-------H---
Confidence            44555555321 2335789999999999999999999999997       7999998  1       00       0   


Q ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEE
Q 019172          243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS  288 (345)
Q Consensus       243 elE~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld  288 (345)
                         ..++..+.+...+||++.--    .  ..+|+.++.|.+++|.
T Consensus       440 ---~~va~~~~~~G~~Vv~~~~s----p--~~~R~~l~~g~fv~v~  476 (511)
T 1g8f_A          440 ---LSLIQDFIGSGSGLIIPDQW----E--DDKDSVVGKQNVYLLD  476 (511)
T ss_dssp             ---HTTHHHHHHTTCEEEESSCC----C--GGGGGGSCCTTEEEEE
T ss_pred             ---HHHHHHHHhcCCeEEEecCC----H--HHHHHHhcCCCEEEEe
Confidence               11223344444555554321    2  4678888777788887

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.47  E-value=2.7e-07  Score=94.52  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC-----ceeeCcHHHHHHHcCchhhhhh-ccChHHHHHHHHHHHHHHhcCCCE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~-----~fID~D~lIE~~~g~sI~ei~~-~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      .++.|+|+|++||||||+|+.|++.|+.     .++|.|.+.+...+.   ..|. .+....++.+. .+.+.+.+....
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~---~~f~~~er~~~l~~i~-~~~~~~l~~G~~  446 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG---LGFSKEDRITNILRVG-FVASEIVKHNGV  446 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT---CCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc---ccccHHHHHHHHHHHH-HHHHHHHhCCCE
Confidence            4678999999999999999999999974     899999865432221   0011 11111111111 123344444455


Q ss_pred             EEEcCCCCCcccCcHHHHHHH----h-cC-cEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQHL----Y-AG-FTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L----~-~G-~VV~Ld~s~a~~  294 (345)
                      ||..+.     ...+..|+.+    + .+ .+|||+++.++.
T Consensus       447 VI~d~~-----~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~  483 (546)
T 2gks_A          447 VICALV-----SPYRSARNQVRNMMEEGKFIEVFVDAPVEVC  483 (546)
T ss_dssp             EEEECC-----CCCHHHHHHHHTTSCTTCEEEEEEECCGGGH
T ss_pred             EEEEcC-----CCCHHHHHHHHHHhhcCCEEEEEEeCCHHHH
Confidence            665533     2344444433    2 25 799999998865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.33  E-value=2.7e-07  Score=78.97  Aligned_cols=40  Identities=23%  Similarity=0.269  Sum_probs=34.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCc--eeeCcHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLET  223 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~--fID~D~lIE~  223 (345)
                      .++..|+|+|++||||||+++.||..++..  ++|+|++.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~   48 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY   48 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence            357889999999999999999999988766  8899997654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.30  E-value=1.4e-06  Score=84.59  Aligned_cols=80  Identities=15%  Similarity=0.090  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGE  245 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE  245 (345)
                      ++..|+|+|++|+||||++..||+.++..+|++|..              -++..|.+     +.++-+......|.+.-
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            456789999999999999999999999999999986              12333321     23344455666788877


Q ss_pred             HHHHHHHhcCCCEEEEcCC
Q 019172          246 CDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       246 ~~vL~~L~~~~~~VIAtGG  264 (345)
                      ...++++.+.++.+|-+||
T Consensus        82 ~~~i~~i~~~gk~pIlVGG  100 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGG  100 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESC
T ss_pred             HHHHHHHHhCCCcEEEEcC
Confidence            7888888777777777776

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.26  E-value=8.1e-07  Score=82.09  Aligned_cols=40  Identities=20%  Similarity=0.152  Sum_probs=36.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      +++.|+|+|++||||||+++.||+.||++++|.|.++...
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            4578999999999999999999999999999999987653

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.21  E-value=4.5e-06  Score=65.15  Aligned_cols=86  Identities=19%  Similarity=0.329  Sum_probs=71.9

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      .+|.|.|+..++.+.|++++.   .++++.|++.+.+|.|++.+.....-.++ -.||..|.|.++.|.+.+..+.+.++
T Consensus         3 ~~~~W~Qt~~~V~v~i~~~~v---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~   78 (92)
T 2xcm_C            3 YRHEYYQKPEEVVVTVFAKGI---PKQNVNIDFGEQILSVVIEVPGEDAYYLQ-PRLFGKIIPDKCKYEVLSTKIEICLA   78 (92)
T ss_dssp             SEEEEEEETTEEEEEEECCSC---CGGGEEEEECSSBEEEEECCTTSCCEEEC-CBBSSCBCGGGCEEEECSSCEEEEEE
T ss_pred             ccccEEeCCCEEEEEEEECCC---ChHHeEEEEECCEEEEEEEcCCCcEEEEe-eEcCCccCchhEEEEEECCEEEEEEE
Confidence            589999999999999999872   46799999999999999886543333455 68999999999999999999999999


Q ss_pred             ccCCCCCcchh
Q 019172          159 KQDPELKWPDI  169 (345)
Q Consensus       159 ~~~~~~~~~~~  169 (345)
                      |.... .|+.+
T Consensus        79 K~~~~-~W~~L   88 (92)
T 2xcm_C           79 KADII-TWASL   88 (92)
T ss_dssp             BSSSC-CCSCS
T ss_pred             cCCCC-cchhc
Confidence            97764 77765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.15  E-value=5.4e-06  Score=76.08  Aligned_cols=29  Identities=14%  Similarity=0.029  Sum_probs=22.7

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+++-|+|.|++||||||+++.|++.|+
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34688899999999999999999999993

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.10  E-value=8.6e-06  Score=66.41  Aligned_cols=90  Identities=16%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             CCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeeh
Q 019172           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        77 ~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      +..+|.|.|+..+|.+.|++|+   ..++++.|++.+.+|.|++.......-.++ -.||..|.|.++.|.+.+..+.+.
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~~---v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~~e~s~~~~~~~~l~i~   83 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIKN---VQKNDVNVEFSEKELSALVKLPSGEDYNLK-LELLHPIIPEQSTFKVLSTKIEIK   83 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCCS---CCGGGEEEECSSSCEEEEEECTTSSEEEEE-ECBSSCCCGGGEEEEECSSSEEEE
T ss_pred             CCCCccEEeCCCEEEEEEEeCC---CCHHHCEEEEEcCEEEEEEEeCCCcEEEEE-eeCCCcCCccccEEEEECCEEEEE
Confidence            4568999999999999999997   246799999999999999876433333455 689999999999999999999999


Q ss_pred             ccccCCCCCcchhHh
Q 019172          157 LKKQDPELKWPDIVE  171 (345)
Q Consensus       157 ~k~~~~~~~~~~~~~  171 (345)
                      ++|...+ .|+.+..
T Consensus        84 L~K~~~~-~W~~L~~   97 (114)
T 1rl1_A           84 LKKPEAV-RWEKLEG   97 (114)
T ss_dssp             EECSSCC-CCSSSBT
T ss_pred             EEcCCCC-cCccccc
Confidence            9997765 7887643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.08  E-value=6.2e-06  Score=79.88  Aligned_cols=79  Identities=18%  Similarity=0.158  Sum_probs=58.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcC-----chhhhhhccChHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGEC  246 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~-----sI~ei~~~~Gee~FRelE~  246 (345)
                      +..|+|+|++|+|||||+..||+.++..+|+.|..              -++..|.     ++.++-+......|.+.-.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~   89 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL   89 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH
Confidence            45688999999999999999999999999999985              1233331     2233444556667888777


Q ss_pred             HHHHHHhcCCCEEEEcCC
Q 019172          247 DVLESLSSHVRAVVATLG  264 (345)
Q Consensus       247 ~vL~~L~~~~~~VIAtGG  264 (345)
                      ..++++.+.++..|-+||
T Consensus        90 ~~i~~i~~~g~~pilVGG  107 (316)
T 3foz_A           90 AEMADITAAGRIPLLVGG  107 (316)
T ss_dssp             HHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHhCCCcEEEEcC
Confidence            788888777776666666

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.03  E-value=5.7e-06  Score=82.63  Aligned_cols=78  Identities=12%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcC-----chhhhhhccChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGECD  247 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~-----sI~ei~~~~Gee~FRelE~~  247 (345)
                      ..|+|+|++|+|||||+..||+.++..+|++|..              .++..|.     ++.++-+......|.+....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~   82 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN   82 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence            4688999999999999999999999999999984              1122221     12233345566788888888


Q ss_pred             HHHHHhcCCCEEEEcCC
Q 019172          248 VLESLSSHVRAVVATLG  264 (345)
Q Consensus       248 vL~~L~~~~~~VIAtGG  264 (345)
                      +++++...++.+|-+||
T Consensus        83 ~i~~i~~~g~~pilVGG   99 (409)
T 3eph_A           83 AIEDIHRRGKIPIVVGG   99 (409)
T ss_dssp             HHHHHHTTTCEEEEECS
T ss_pred             HHHHHHhcCCCEEEECC
Confidence            88998887777776776

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.02  E-value=4.3e-05  Score=70.83  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      +.|.|+|.+||||||+++.|++.+|++.+...+.+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~   36 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence            35889999999999999999999999998876543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.86  E-value=4.1e-05  Score=69.09  Aligned_cols=28  Identities=21%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++++-|+|.|++||||||+++.|++.|+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5688899999999999999999999985

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.83  E-value=1e-05  Score=71.37  Aligned_cols=27  Identities=22%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|+|+|++||||||+++.|+..+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            467899999999999999999999884

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.79  E-value=8.3e-05  Score=67.26  Aligned_cols=27  Identities=11%  Similarity=0.030  Sum_probs=24.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++-|+|.|++||||||+++.|++.|.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999999884

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.75  E-value=1.3e-05  Score=69.82  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLE  222 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~lIE  222 (345)
                      ++..|.|+|++||||||+++.|+..++  +.+++.|.++.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            467799999999999999999999999  99999998653

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=97.74  E-value=3.5e-05  Score=64.45  Aligned_cols=84  Identities=23%  Similarity=0.351  Sum_probs=69.4

Q ss_pred             ceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeec-cCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        80 ~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls-~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      .|.|.|+..+|.++|++++     .+++.|++..++|.|++.+ .....-.++ -.||..|.|.++.|.+-+..+.+.|+
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~~~y~~~-l~L~~~I~~e~S~~~v~~~kiei~L~   78 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCCLR   78 (125)
T ss_dssp             CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred             ceeEEeCCCEEEEEEEecC-----CCceEEEEECCEEEEEEEeCCCCceEEEE-EEccceeccccCEEEECCCEEEEEEE
Confidence            8999999999999999998     5799999999999999875 222334455 68999999999999998888999999


Q ss_pred             ccCCCCCcchh
Q 019172          159 KQDPELKWPDI  169 (345)
Q Consensus       159 ~~~~~~~~~~~  169 (345)
                      |......||.+
T Consensus        79 K~~~~~~W~rL   89 (125)
T 1ejf_A           79 KGESGQSWPRL   89 (125)
T ss_dssp             ESSTTCCCSSS
T ss_pred             ECCCCCCCCce
Confidence            87654566665

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.72  E-value=1.2e-05  Score=69.23  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=24.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +.++.|+|+|++||||||+.+.|+..+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678899999999999999999998763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.71  E-value=9.1e-05  Score=68.25  Aligned_cols=31  Identities=10%  Similarity=0.018  Sum_probs=25.7

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..++++-|+|.|++||||||+++.|++.|+.
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456788999999999999999999999853

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.68  E-value=0.0001  Score=66.45  Aligned_cols=32  Identities=13%  Similarity=0.118  Sum_probs=26.5

Q ss_pred             hhhhcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       180 ~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .++.++++.|+|+|++|+|||||.+.|++.+.
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34567889999999999999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.64  E-value=6.7e-05  Score=68.25  Aligned_cols=32  Identities=9%  Similarity=0.014  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-CCceee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS  216 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID  216 (345)
                      +++.|+|.|.+||||||+++.||+.| ++.++.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            46789999999999999999999999 677774

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.63  E-value=2.5e-05  Score=78.56  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH--HHHH-HHcCchhhhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLET-FAKQTIDSWM  233 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~--lIE~-~~g~sI~ei~  233 (345)
                      ....+|+|+|++|+||||+|+.||+.++++|++.|.  +.+. ..|.....++
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l  100 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII  100 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence            346789999999999999999999999999998874  3332 3454444333

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.62  E-value=1.5e-05  Score=75.08  Aligned_cols=36  Identities=11%  Similarity=0.039  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI  221 (345)
                      ...|.|.|++||||||+++.|++.||     +++||+|++.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            45689999999999999999999998     8999999986

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.58  E-value=0.00014  Score=61.95  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~lIE~~  224 (345)
                      .+..++|+|++|+||||+++.++..+    |  ..+++.+++++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~   82 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL   82 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            47899999999999999999999887    4  4567777776653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.57  E-value=9.7e-05  Score=66.41  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +.+|+|+|++|+||||+++.+|..++.+++..+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~   77 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            568999999999999999999999999888765

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.50  E-value=0.00013  Score=62.44  Aligned_cols=89  Identities=10%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             CCcceEEeec-ccceeeeeeecCcccccccceeEecCCceEEEEeeccCCc------------cceeeeccccccccCCC
Q 019172           77 NTSQYEFSDG-SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF------------ITLIETNQLFDKIKPTE  143 (345)
Q Consensus        77 ~~~~y~~~~~-~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~------------~tlIe~k~l~~~i~p~E  143 (345)
                      ...+|.|.|+ ..+|.+.|++++   ....++.|++...+|.|.+......            .-.++ -.||..|.|.+
T Consensus        18 ~~~r~~W~Qt~~~~V~vtI~~k~---v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~-~~L~~~I~pe~   93 (134)
T 1wh0_A           18 AFVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQ-VKLRNLIEPEQ   93 (134)
T ss_dssp             SCCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEE-EEBSSCEEEEE
T ss_pred             cCCCeEEEcCCCCEEEEEEEeCC---CCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEe-ccccccCCchh
Confidence            3559999999 999999999986   3357899999999999988754321            22233 56999999999


Q ss_pred             ceeeecccceeehccccCCCCCcchhH
Q 019172          144 TIWYIDEDQLVINLKKQDPELKWPDIV  170 (345)
Q Consensus       144 tiw~~Dd~~~~~~~k~~~~~~~~~~~~  170 (345)
                      +.|.+.+..+.|.|+|.+. ..|+.+.
T Consensus        94 S~~~v~~~kIeI~L~K~e~-~~W~~L~  119 (134)
T 1wh0_A           94 CTFCFTASRIDICLRKRQS-QRWGGLE  119 (134)
T ss_dssp             EEEEECSSEEEEEEEESSS-CCCSCSB
T ss_pred             CEEEEeCCEEEEEEEECCC-Ccccccc
Confidence            9999999999999998753 5777653

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.49  E-value=0.00058  Score=61.09  Aligned_cols=29  Identities=21%  Similarity=0.153  Sum_probs=24.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh--CCceee
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL--GYTPLS  216 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L--g~~fID  216 (345)
                      =|+|-|..||||||.++.|++.|  |++++-
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~   34 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM   34 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            37888999999999999999999  555553

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.45  E-value=0.00013  Score=70.29  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      .|.|+|++||||||+++.|+..++       ..++..|.+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            688999999999999999999986       5568888863

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.42  E-value=0.0011  Score=58.79  Aligned_cols=28  Identities=21%  Similarity=0.048  Sum_probs=24.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh---CCceee
Q 019172          189 IFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID  216 (345)
                      |+|-|.-||||||.++.|++.|   |++++-
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~   33 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL   33 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            7889999999999999999988   666663

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.42  E-value=8.3e-05  Score=63.82  Aligned_cols=27  Identities=26%  Similarity=0.127  Sum_probs=24.7

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..++.|+|+|++||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            357889999999999999999999987

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.37  E-value=0.00012  Score=66.04  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc----------eeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~----------fID~D~lI  221 (345)
                      .+..|.|+|++||||||+++.|+..+|..          +++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~   70 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY   70 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence            46679999999999999999999999976          78888653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.34  E-value=0.00013  Score=69.41  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=32.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .+.+|+|.|++|+|||++|+.+|+.++.+|+..+-
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence            46789999999999999999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.32  E-value=0.00016  Score=64.29  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=30.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|.|++|+|||++++.+|..++.+++..+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~   71 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA   71 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            4578999999999999999999999999987643

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.32  E-value=0.00023  Score=66.22  Aligned_cols=41  Identities=20%  Similarity=0.164  Sum_probs=34.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc--HHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFA  225 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D--~lIE~~~  225 (345)
                      .+..|+|.|++|+|||++++.+|..++.+|+..+  ++..+..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~   90 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF   90 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence            4678999999999999999999999999998766  4444333

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.32  E-value=0.00015  Score=67.73  Aligned_cols=33  Identities=9%  Similarity=0.027  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +..++|.|++|+|||++|+.+|+.+|++|+..+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            467888999999999999999999999998876

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00067  Score=67.61  Aligned_cols=34  Identities=12%  Similarity=0.080  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|+||+|||.+|+++|..+|++|+..+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~  214 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS  214 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence            3678999999999999999999999999998765

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0002  Score=60.85  Aligned_cols=87  Identities=14%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             CcceEEeecccc-------eeeeeeecCcccccccceeEecCCceEEEEeeccC------CccceeeeccccccccCCCc
Q 019172           78 TSQYEFSDGSAE-------IELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------SFITLIETNQLFDKIKPTET  144 (345)
Q Consensus        78 ~~~y~~~~~~~E-------le~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~------~~~tlIe~k~l~~~i~p~Et  144 (345)
                      ++.|.|.|+.++       |.++|++++     .+++.|++...+|.|++.+.+      ...-.++ -.||..|.|.++
T Consensus         6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~-l~L~~~Idpe~S   79 (134)
T 2cg9_X            6 NPQVAWAQRSSTTDPERNYVLITVSIAD-----CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLH-IDLYKEIIPEKT   79 (134)
T ss_dssp             -----CBCCCEEECCCSSEEEEECCCSS-----EESCCCCBCSSEEEECCEEC-------CEEBCEE-EECSSCCCSSSE
T ss_pred             CCCEEEEeCCCCcCCcCCEEEEEEEecC-----CCceEEEEECCEEEEEEecccccCCccCceEEEE-EEChhhcccccc
Confidence            568999999999       999999998     458999998999999887754      1223444 579999999999


Q ss_pred             eeeecccc-eeehccccCC-CCCcchhH
Q 019172          145 IWYIDEDQ-LVINLKKQDP-ELKWPDIV  170 (345)
Q Consensus       145 iw~~Dd~~-~~~~~k~~~~-~~~~~~~~  170 (345)
                      .|.+-... +.+.|+|... +..||.+.
T Consensus        80 ~~~v~~~~~vei~L~K~~~~~~~W~rL~  107 (134)
T 2cg9_X           80 MHKVANGQHYFLKLYKKDLESEYWPRLT  107 (134)
T ss_dssp             EEEECCC--CEEEEEECSSSSCCCSCSS
T ss_pred             EEEECCCEEEEEEEEECCCCCCCCCcee
Confidence            99987777 8999998763 56777764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.28  E-value=0.00058  Score=59.00  Aligned_cols=37  Identities=8%  Similarity=-0.048  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI  221 (345)
                      .+.+++|.|++|+||||+++.+|+.++     +.+++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            578999999999999999999999876     3566766654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.27  E-value=0.00018  Score=63.11  Aligned_cols=37  Identities=14%  Similarity=0.104  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI  221 (345)
                      .+..|.|+|++||||||+++.|+..+.     ..+|..|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            567899999999999999999999986     6788888763

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.26  E-value=0.00018  Score=68.67  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .+.+|+|+|++|+|||++|+.+|+.++.+|+..|.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~  105 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA  105 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence            46789999999999999999999999999987663

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.23  E-value=0.00059  Score=61.88  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ...+++|.|++|+|||++|+.+|+.++.+|+..+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~   96 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   96 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            3568999999999999999999999999988764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.23  E-value=0.00025  Score=63.47  Aligned_cols=27  Identities=4%  Similarity=-0.016  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++..|.|+|++||||||+++.|+..-|
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g   45 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKYKN   45 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccC
Confidence            577899999999999999999998833

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.23  E-value=0.00022  Score=61.22  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+++.|+..+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            567899999999999999999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.22  E-value=0.00021  Score=65.22  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|.|++|+||||+++.+|..++.+|+..+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~   86 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNIS   86 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence            3678999999999999999999999998887543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.22  E-value=0.00022  Score=64.56  Aligned_cols=34  Identities=18%  Similarity=0.086  Sum_probs=30.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ..+.+|+|.|++|+|||++++.+|..++.+++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3567899999999999999999999999998765

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.17  E-value=0.00027  Score=64.09  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+++|.|++|+|||++++.+|+.++.+++..|
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~   82 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            4678999999999999999999999998887543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.16  E-value=0.00032  Score=57.82  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+++|+|++|+|||++++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999997

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.10  E-value=0.00028  Score=66.30  Aligned_cols=36  Identities=17%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~l  220 (345)
                      .+..|.|+|++||||||+++.|+..++       ..++++|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            456789999999999999999999887       677888875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00029  Score=70.45  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|+||+|||++|+++|..+|++|+..+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            3678999999999999999999999999998775

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.10  E-value=0.00029  Score=58.37  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D  218 (345)
                      ...+++|+|++|+|||++++.+|+.+          +.+++..+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~   85 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD   85 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence            46789999999999999999999998          67666554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.09  E-value=0.00051  Score=58.23  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      .+..++|+|++|+||||+++.++..+   |  .-|++..++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            67899999999999999999999988   6  456665544

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.07  E-value=0.00034  Score=58.18  Aligned_cols=31  Identities=13%  Similarity=-0.103  Sum_probs=27.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCcee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fI  215 (345)
                      .+.+|+|.|.+|+|||++|+.++...   +.+|+
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            56789999999999999999999986   66665

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.05  E-value=0.00043  Score=62.05  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.++|+|++|+||||+++.+|..++.+++..+
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~   81 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   81 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            456999999999999999999999998887765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.05  E-value=0.00069  Score=62.99  Aligned_cols=35  Identities=11%  Similarity=0.013  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ...+|+|.|++|+|||++++.+|+.++.+|+..+.
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~   88 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA   88 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence            44689999999999999999999999999887754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00035  Score=70.08  Aligned_cols=34  Identities=15%  Similarity=0.020  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.||||+|||.+|+++|..+|++|+..+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~  247 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLA  247 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            3688999999999999999999999999998765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.04  E-value=0.00018  Score=64.78  Aligned_cols=33  Identities=18%  Similarity=0.094  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +..|+|.|++|+|||++++.+|..++.+|+..+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            567999999999999999999999999888764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00036  Score=70.00  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|+||+|||++|+++|..+|++|+..+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP  247 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            3689999999999999999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.03  E-value=0.00041  Score=64.33  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ++.+.|+|++|+||||+++.||..++..++..+
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~   76 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVK   76 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence            456999999999999999999999998776543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.01  E-value=0.00059  Score=58.38  Aligned_cols=35  Identities=14%  Similarity=0.022  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .+..+.|+|++||||||+++.+.  .|...++.|.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~   42 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR   42 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence            56789999999999999999864  466777777654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.00  E-value=0.00043  Score=64.92  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            468999999999999999999999999998765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.98  E-value=0.00047  Score=61.65  Aligned_cols=29  Identities=7%  Similarity=0.011  Sum_probs=25.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-CCce
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-GYTP  214 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-g~~f  214 (345)
                      ++.|+|.|.+||||||+++.|++.| ++.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            5779999999999999999999999 5543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.94  E-value=0.00094  Score=67.51  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ++.|+|+|++|+|||++++.+|..++.+|+..+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            567999999999999999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.90  E-value=0.00072  Score=59.04  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D~lI  221 (345)
                      .+..|.|+|++||||||+++.|+..+   |..  +++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            45679999999999999999999976   544  44667754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.89  E-value=0.0007  Score=61.82  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.|+|+|++|+||||+++.+|..++..++..+
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~  105 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS  105 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence            456999999999999999999999998888765

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.89  E-value=0.00056  Score=65.53  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~  116 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS  116 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence            467999999999999999999999999998765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.89  E-value=0.00066  Score=64.88  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ...+|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~  149 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS  149 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence            4678999999999999999999999999987654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.88  E-value=0.00023  Score=61.53  Aligned_cols=25  Identities=12%  Similarity=0.064  Sum_probs=22.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +.|+|+|++||||||+++.|++.|+
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999985

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.87  E-value=0.0007  Score=65.14  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +.+|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~  180 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS  180 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence            579999999999999999999999999998654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.85  E-value=0.00061  Score=59.46  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      +++.|+|++||||||+.+.|+..++..+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            4689999999999999999999998554

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.00056  Score=69.39  Aligned_cols=34  Identities=18%  Similarity=0.047  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|+||+|||++|+++|..++++|+..+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            4689999999999999999999999999998765

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0007  Score=68.19  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ++.|+|.|+||+|||.+|+++|..++++|+..+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~  248 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIV  248 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence            688999999999999999999999999998765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.81  E-value=0.00078  Score=63.69  Aligned_cols=32  Identities=22%  Similarity=0.128  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-CCceeeC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-GYTPLST  217 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~  217 (345)
                      .+.|+|.|++|+|||++++.+|..+ +.+|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i   77 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSI   77 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEE
Confidence            4789999999999999999999999 7777643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.80  E-value=0.00075  Score=61.75  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=32.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .++.|+|+|++|+||||++..|+++.+ .+|..|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~   68 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD   68 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence            578899999999999999999999977 999998753

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.78  E-value=0.00084  Score=66.34  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~  219 (345)
                      ..+.+|+|.|++|+|||++|+.+|+.+|  ++|+..+.
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~   98 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG   98 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence            3457899999999999999999999999  88887663

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.78  E-value=0.0013  Score=56.50  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCce--eeCcHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLETF  224 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~f--ID~D~lIE~~  224 (345)
                      .+|+|.|++|+|||++++.++..+   +.++  ++..+++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            789999999999999999999987   4444  6666665543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.74  E-value=0.00044  Score=57.50  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|.|.+|+|||++|+.++...+ +|+..|
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~   58 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA   58 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence            467899999999999999999999888 666554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.72  E-value=0.00083  Score=58.89  Aligned_cols=26  Identities=15%  Similarity=0.075  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .++.++|+|++||||||+.+.|+..+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            36789999999999999999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.71  E-value=0.00071  Score=61.80  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+.+|+|.|++|+|||++++.+|+.++
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999983

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.70  E-value=0.00092  Score=59.26  Aligned_cols=26  Identities=23%  Similarity=0.083  Sum_probs=17.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH-Hhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA-VGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA-~~L  210 (345)
                      .+..|.|+|++||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            57889999999999999999999 665

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.69  E-value=0.0015  Score=57.13  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=24.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      -.+..+.|+|++||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3578899999999999999999998874

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.67  E-value=0.0036  Score=62.34  Aligned_cols=33  Identities=15%  Similarity=0.001  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .+++|.|++|+||||+++.+|+.++.+|+..+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a   83 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISA   83 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence            689999999999999999999999999987653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.66  E-value=0.0012  Score=66.37  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ...++|.|++|+||||+++.+|+.+|++++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN  109 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            368999999999999999999999999998765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.63  E-value=0.0014  Score=62.02  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI  215 (345)
                      .+++|+|++|+||||+++.+|..++.++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~   80 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIH   80 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            67999999999999999999999987653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.56  E-value=0.0033  Score=67.50  Aligned_cols=33  Identities=15%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.|+|.|+||+|||.+|+++|..++.+|+..+
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~  543 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK  543 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence            467999999999999999999999999999876

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.56  E-value=0.0013  Score=60.39  Aligned_cols=33  Identities=21%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ...+++|.|++|+|||++++.+|+.++.+++..
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~   69 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   69 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            357899999999999999999999999988643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.55  E-value=0.0016  Score=60.56  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---CCcee--eCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---GYTPL--STKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fI--D~D~lI  221 (345)
                      +.+++|.|++|+||||+++.++..+   +.+++  +.+++.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            4689999999999999999999988   66655  444443

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=96.51  E-value=0.0039  Score=53.98  Aligned_cols=84  Identities=14%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CcceEEeecccceeeeeeecCcccccccceeEecC-CceEEEEeeccCCccceeeeccccccccCCCceeeecccceeeh
Q 019172           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDAD-GTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        78 ~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~-d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      ++.|.|.|+..+|.+.|.+++     ..++.|++. ..+|.|+........-.++ -.||..|.|. +.|.+-...+.+.
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~-----~~~v~V~~~~~~~l~~~~~~~~~~~y~~~-l~L~~~Idpe-S~~~v~~~kIei~   76 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPD-----AKDISVKCEPQGLFSFSALGAQGERFEFS-LELYGKIMTE-YRKNVGLRNIIFS   76 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSS-----EEEEEECCCTTEEEEEEEETTTTEEEEEE-EEBSSCEEEE-EEEEEESSSEEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeCC-----CCceEEEEecCCEEEEEEEcCCCceEEEE-eEhhhccccc-ceEEecCCEEEEE
Confidence            468999999999999999998     368999999 7899998874332333455 4799999999 9999988889999


Q ss_pred             ccccCCCCCcchh
Q 019172          157 LKKQDPELKWPDI  169 (345)
Q Consensus       157 ~k~~~~~~~~~~~  169 (345)
                      ++|... ..||.+
T Consensus        77 L~K~e~-~~W~rL   88 (150)
T 2kmw_A           77 IQKEER-SWWTRL   88 (150)
T ss_dssp             EEECCS-SCCSCS
T ss_pred             EEECCC-CcCccc
Confidence            988764 466665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.50  E-value=0.0012  Score=61.39  Aligned_cols=31  Identities=19%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      +.+++|.|++|+|||++++.+|..++.+++.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            6799999999999999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.49  E-value=0.0025  Score=54.02  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            347999999999999999999999865

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.49  E-value=0.0019  Score=60.43  Aligned_cols=33  Identities=18%  Similarity=0.340  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC--ceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY--TPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~--~fID~  217 (345)
                      .+.+++|.|++|+|||++++.+|+.++.  +|+..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~  103 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI  103 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc
Confidence            3578999999999999999999999985  55443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.48  E-value=0.0016  Score=57.92  Aligned_cols=26  Identities=12%  Similarity=0.057  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57889999999999999999999876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.47  E-value=0.0018  Score=64.02  Aligned_cols=33  Identities=21%  Similarity=0.118  Sum_probs=28.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-CCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~  217 (345)
                      ....|+|.|++|+|||++|+.+|..+ +.+|+..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v  199 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI  199 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence            35789999999999999999999999 8777644

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.45  E-value=0.0019  Score=58.85  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+++|+|++|+|||++|+.+|+.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            4799999999999999999999983

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.43  E-value=0.0019  Score=54.39  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+++|.|++|+|||++++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3469999999999999999999986

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.43  E-value=0.0014  Score=60.72  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---------g~~fID~D  218 (345)
                      .+.+++|+|++|+||||+++.+++.+         +++++..+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~   85 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN   85 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            46789999999999999999999998         77776554

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.41  E-value=0.0022  Score=63.87  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~  219 (345)
                      ....+++|+|++|+|||++++.||+.+          +.+++..|-
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~  244 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence            356789999999999999999999997          788887774

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.40  E-value=0.0021  Score=65.35  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ..+..++|+|++|+||||+++.+|..++.+++..
T Consensus       106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            3678899999999999999999999999887654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.39  E-value=0.0021  Score=59.40  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L------g~~fID~D  218 (345)
                      .+..++|+|++|+||||+++.++..+      ++.++..+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            46789999999999999999999988      77777665

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.39  E-value=0.0023  Score=59.82  Aligned_cols=34  Identities=9%  Similarity=-0.058  Sum_probs=30.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh-----------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----------g~~fID~D  218 (345)
                      .+.+++|.|++|+||||+++.+++.+           +++++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            35689999999999999999999988           88888766

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.39  E-value=0.012  Score=58.19  Aligned_cols=36  Identities=8%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-----CCcee--eCcHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPL--STKELL  221 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fI--D~D~lI  221 (345)
                      ..+++|.|++|+||||+++.+|..+     +.+++  +..++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5689999999999999999999988     65544  555543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.33  E-value=0.0019  Score=69.44  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ++.|+|.|+||+|||++|+.+|..+|.+|+..+-
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~  271 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING  271 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence            5789999999999999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.31  E-value=0.0025  Score=57.52  Aligned_cols=27  Identities=15%  Similarity=0.058  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..++|+|++||||||+.+.|+..+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            578899999999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.29  E-value=0.0024  Score=60.19  Aligned_cols=37  Identities=14%  Similarity=0.075  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC-------cee-eCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPL-STKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~-------~fI-D~D~lI  221 (345)
                      ++..|.|+|++||||||+++.|+..|+-       ..+ ..|.++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            4567889999999999999999999862       345 888874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.25  E-value=0.0022  Score=58.64  Aligned_cols=30  Identities=17%  Similarity=-0.129  Sum_probs=26.0

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..+++-|+|.|++||||||+++.|++.|+.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346788999999999999999999998765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.24  E-value=0.0028  Score=54.50  Aligned_cols=27  Identities=19%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.+..+.|+|++||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            457789999999999999999999988

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.21  E-value=0.0029  Score=63.84  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            4578999999999999999999999999998765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.21  E-value=0.0032  Score=55.95  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +.|+|+||+|+||+||.+.|.+.+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            459999999999999999998765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.20  E-value=0.0042  Score=57.44  Aligned_cols=32  Identities=13%  Similarity=0.016  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+++.|++|+|||++++.+|+.++.+++..+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            44566677999999999999999999988766

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.18  E-value=0.0033  Score=63.90  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ++.|+|+|++|+||||+++.+|..++.+|+..+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            456999999999999999999999998887665

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.17  E-value=0.0034  Score=56.48  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=27.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC---CceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~  217 (345)
                      .+.+|+|.|.+|+|||++++.+++.++   .+|+..
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v   63 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL   63 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence            467899999999999999999999875   456544

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.10  E-value=0.0039  Score=56.58  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +++-|+|.|++||||||+++.|++.|+.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4788999999999999999999999986

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.09  E-value=0.0041  Score=57.92  Aligned_cols=31  Identities=10%  Similarity=-0.121  Sum_probs=27.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh----CCceeeCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL----GYTPLSTK  218 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L----g~~fID~D  218 (345)
                      +++|+|++|+||||+++.++..+    ++.++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            89999999999999999999998    56666554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.08  E-value=0.0038  Score=65.31  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~  219 (345)
                      ..+.+++|+|++|+|||++++.||+.+          +..++..|-
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            356789999999999999999999998          888888776

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.03  E-value=0.0049  Score=60.48  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=30.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      ...+..|.|+|++|+||||+++.|+..++..++..
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~  200 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  200 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence            34577899999999999999999999998877763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0047  Score=59.39  Aligned_cols=26  Identities=4%  Similarity=0.143  Sum_probs=24.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+|+|.|+||+|||++++.+++.|
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999999

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.96  E-value=0.004  Score=53.85  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=23.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+++.|+..+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999743

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.96  E-value=0.0041  Score=59.09  Aligned_cols=37  Identities=19%  Similarity=0.060  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      .+..|.|+|++||||||+++.|+..+.       ..++..|.++
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~  132 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL  132 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence            466789999999999999999999873       4577777653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.93  E-value=0.0053  Score=52.80  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~  219 (345)
                      ...+..+.|+|++|+||||+++.++..+     ..-|++.+.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            3457889999999999999999999543     345666654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.91  E-value=0.0046  Score=54.62  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..|.|+|++||||||+.+.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            3568999999999999999999987

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.84  E-value=0.0068  Score=54.52  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      ..++.|+|.|++|+||||++..|.++ |+.++.=|...
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~   50 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID   50 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence            36788999999999999999999985 99988877654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.84  E-value=0.012  Score=55.42  Aligned_cols=44  Identities=11%  Similarity=0.024  Sum_probs=34.0

Q ss_pred             hhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       171 ~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      +.|+.+...+.....+..++|.|++|+|||++++.+|+.+....
T Consensus         9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A            9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            55666666444443455699999999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.83  E-value=0.0043  Score=56.33  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            477899999999999999999986653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.77  E-value=0.0061  Score=57.46  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC----Cc--eeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~--fID~D~lIE~~~  225 (345)
                      +.+++|.|++|+|||++++.+|..+.    ++  |+.+.+++.+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~  197 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK  197 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence            58999999999999999999998654    44  467777766543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.71  E-value=0.0051  Score=55.40  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999999986653

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.71  E-value=0.0088  Score=54.32  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC---CceeeCcHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLET  223 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~D~lIE~  223 (345)
                      .+-|.|+|++||||+|+|+.|.+.+|   ++.+.+-+.+.+
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~   51 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE   51 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence            34677899999999999999999885   778888777753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.65  E-value=0.007  Score=57.84  Aligned_cols=29  Identities=14%  Similarity=0.120  Sum_probs=25.9

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..-++..+.|+|++||||||+.+.|+..+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34468899999999999999999999887

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.64  E-value=0.0062  Score=53.18  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=29.7

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh--h---------CCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG--L---------GYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~--L---------g~~fID~D~  219 (345)
                      ...+..+.|+|++|+||||+++.+|..  +         +.-|++++.
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            345788999999999999999999983  3         355777765

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.62  E-value=0.032  Score=52.96  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=28.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      +..|.|+|++|+||||++..||..+   |  .-++|.|.+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            4578899999999999999999876   2  456677753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.60  E-value=0.0067  Score=55.36  Aligned_cols=34  Identities=9%  Similarity=-0.055  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      +..++|.|++|+||||+.+.+++.+++-+++.+.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            4789999999999999999999999888888754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.57  E-value=0.0063  Score=58.14  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      +..+.|+|++||||||+.+.|+..+....
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            67899999999999999999999986543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.55  E-value=0.0064  Score=55.27  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999998665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.54  E-value=0.0075  Score=62.86  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +++|+|++|+|||++|+.+|+.++.+++..|
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~  520 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD  520 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEe
Confidence            7999999999999999999999998877443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.53  E-value=0.0093  Score=52.07  Aligned_cols=26  Identities=12%  Similarity=0.055  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +++-++++|+||+||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46678899999999999997666654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.51  E-value=0.008  Score=54.97  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+..+.|+|++||||||+.+.|+-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5778999999999999999999875

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.51  E-value=0.016  Score=53.75  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..++|.|++|+||||+++.+|+.++..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3468999999999999999999999763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.50  E-value=0.0067  Score=56.03  Aligned_cols=27  Identities=15%  Similarity=0.083  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999999987653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.50  E-value=0.0067  Score=56.32  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            47789999999999999999998765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.48  E-value=0.0088  Score=56.69  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..|.|+|++||||||+.+.||..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999776

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.46  E-value=0.0072  Score=54.96  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            477899999999999999999987653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.46  E-value=0.0071  Score=55.54  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            477899999999999999999987653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.46  E-value=0.0071  Score=55.37  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            477899999999999999999987753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.44  E-value=0.0074  Score=54.49  Aligned_cols=27  Identities=11%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            578899999999999999999987653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.42  E-value=0.0091  Score=55.19  Aligned_cols=27  Identities=11%  Similarity=0.033  Sum_probs=24.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            357789999999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.42  E-value=0.027  Score=53.99  Aligned_cols=26  Identities=27%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++..|.|+|++||||||+.+.||..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.41  E-value=0.0076  Score=53.96  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+..+.|+|++||||||+.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.40  E-value=0.0099  Score=51.07  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~  219 (345)
                      ...+..+.|+|++|+||||+++.+|..-+  .-|++++.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            34578899999999999999999987433  55777765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.40  E-value=0.0075  Score=56.45  Aligned_cols=26  Identities=12%  Similarity=0.118  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            47789999999999999999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.39  E-value=0.0072  Score=54.95  Aligned_cols=26  Identities=15%  Similarity=0.003  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57789999999999999999998765

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.38  E-value=0.0092  Score=56.45  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..|.|+|++||||||+.+.||..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.37  E-value=0.0094  Score=55.20  Aligned_cols=26  Identities=15%  Similarity=0.123  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999999998763

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.37  E-value=0.0053  Score=56.72  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+|+|.|++|+|||++++.+|+.++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            45699999999999999999999987

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.36  E-value=0.008  Score=55.86  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            467799999999999999999987653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.35  E-value=0.0081  Score=55.40  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+++|.|++|+||||+++.+|+.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.33  E-value=0.014  Score=53.61  Aligned_cols=33  Identities=9%  Similarity=0.079  Sum_probs=27.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      +..+|+|.|++|+||||++..||+.++-..+..
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f   89 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   89 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence            345799999999999999999999987655543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.31  E-value=0.0084  Score=55.70  Aligned_cols=27  Identities=26%  Similarity=0.142  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            577899999999999999999987663

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.31  E-value=0.0085  Score=55.27  Aligned_cols=26  Identities=27%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            57889999999999999999998765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.31  E-value=0.0079  Score=54.22  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46779999999999999999998765

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.31  E-value=0.0067  Score=54.88  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+++|.|++|+|||++++.+|+.+
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHh
Confidence            359999999999999999999987

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.31  E-value=0.012  Score=54.70  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+++|+|++|+||||+++.+|..+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            349999999999999999999965

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.28  E-value=0.024  Score=58.04  Aligned_cols=35  Identities=17%  Similarity=0.064  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----CCcee-eCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----GYTPL-STKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g~~fI-D~D~  219 (345)
                      .+..|.|+|++||||||+.+.||..+    |-..+ +.|.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            36689999999999999999999876    33444 4564

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.27  E-value=0.013  Score=53.10  Aligned_cols=24  Identities=17%  Similarity=0.068  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+++|.|++|+||||+++.+|+.+
T Consensus        43 ~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           43 PHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            349999999999999999999987

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.27  E-value=0.0093  Score=55.90  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++|.|++|+||||+++.+|..+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            489999999999999999999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.26  E-value=0.019  Score=49.74  Aligned_cols=34  Identities=9%  Similarity=-0.009  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g~~fID~D  218 (345)
                      +...|+|+|.+|+||||+...|+..+    ..+.++.|
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d   74 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD   74 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            45789999999999999999999875    23445544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.26  E-value=0.0092  Score=63.54  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D  218 (345)
                      ...+++|+|++|+|||++++.||+.+          +.+++..|
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  233 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ  233 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence            45689999999999999999999998          77776554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.24  E-value=0.0092  Score=54.94  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            57789999999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.24  E-value=0.0092  Score=55.12  Aligned_cols=26  Identities=12%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            47789999999999999999998765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.24  E-value=0.016  Score=50.50  Aligned_cols=38  Identities=8%  Similarity=0.004  Sum_probs=29.2

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL  220 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l  220 (345)
                      ...+..+.|+|++|+||||++..+|..+     +.-|++++.-
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            3457889999999999999988876543     4567777643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.23  E-value=0.0092  Score=55.83  Aligned_cols=27  Identities=19%  Similarity=0.030  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+-.+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            467899999999999999999987653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.20  E-value=0.0096  Score=55.02  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467799999999999999999987653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.15  E-value=0.0068  Score=52.83  Aligned_cols=25  Identities=16%  Similarity=0.116  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +.|.|+|.+||||||+.+.|+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4688999999999999999998864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.10  E-value=0.012  Score=55.19  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~  217 (345)
                      .+.+|+|+|.+|+|||++|+.++...   +.+|+..
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v   59 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTL   59 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEE
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEE
Confidence            46789999999999999999999965   4555433

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.08  E-value=0.014  Score=54.93  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l  220 (345)
                      ++..|.|+|+.|+||||++..||..+    |  .-++|.|..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            46789999999999999999998655    3  357888863

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.08  E-value=0.011  Score=54.43  Aligned_cols=26  Identities=15%  Similarity=0.017  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47789999999999999999998765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.05  E-value=0.017  Score=60.26  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+++|+|++|+|||++++.||+.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999988

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.05  E-value=0.015  Score=53.29  Aligned_cols=29  Identities=14%  Similarity=0.065  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ....+..++|+|++|+||||+++.+|..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34467889999999999999999988765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.04  E-value=0.018  Score=48.52  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..+|+|++||||||+.++|+-.|+-
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5779999999999999999988863

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.03  E-value=0.013  Score=53.52  Aligned_cols=24  Identities=13%  Similarity=-0.029  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+.|+|++||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            568899999999999999999765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.01  E-value=0.015  Score=51.04  Aligned_cols=24  Identities=8%  Similarity=0.001  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|.|+|++||||||+...|+..|
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            468899999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.01  E-value=0.012  Score=56.75  Aligned_cols=27  Identities=11%  Similarity=0.132  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+.+.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            578999999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.98  E-value=0.014  Score=46.61  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+++|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.97  E-value=0.018  Score=49.66  Aligned_cols=34  Identities=6%  Similarity=0.040  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC----CceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D  218 (345)
                      +...|+|+|.+|+||||+...|+..+.    ...++.|
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d   66 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD   66 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence            456899999999999999999998763    3445554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.96  E-value=0.017  Score=52.42  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+++|.|++|+||||+++.+|+.+.
T Consensus        46 ~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           46 MPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            34699999999999999999999974

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.87  E-value=0.014  Score=51.90  Aligned_cols=28  Identities=18%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCCc--eeeC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGYT--PLST  217 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~~--fID~  217 (345)
                      |+|+|.+||||||+|+.||.. |.+  |+++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999987 754  6666

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.82  E-value=0.012  Score=59.70  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ...+.+|+|+|++|+|||++|+.||..++.
T Consensus        38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           38 ALSGESVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             HHHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             HhcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence            345789999999999999999999998853

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.80  E-value=0.019  Score=52.31  Aligned_cols=27  Identities=30%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+..+.|+|++|+||||++..++..+
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367889999999999999999988643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.78  E-value=0.017  Score=56.39  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..|.|+|++||||||+.+.||..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            35678999999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.76  E-value=0.017  Score=56.47  Aligned_cols=26  Identities=23%  Similarity=0.158  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.+|-.+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            46779999999999999999999765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.75  E-value=0.018  Score=46.24  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999888754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.74  E-value=0.016  Score=48.22  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|+..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999763

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.73  E-value=0.023  Score=54.75  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .++.++|+|.+|+||||++..|.++ |..++.-|...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~  178 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE  178 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence            4788999999999999999999886 99998666543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.70  E-value=0.017  Score=47.78  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...|+|+|.+|+||||+...|+.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999975

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.70  E-value=0.015  Score=53.98  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..+.|+|++||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6779999999999999999998664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.68  E-value=0.025  Score=50.26  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=27.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh--C--CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL--G--YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L--g--~~fID~D~  219 (345)
                      +...++++|..|+||||++..||..+  |  ...+|.|-
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45568889999999999999999765  3  44678773

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.65  E-value=0.016  Score=54.58  Aligned_cols=26  Identities=12%  Similarity=0.233  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            57889999999999999999998665

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.62  E-value=0.02  Score=58.67  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .+..++|+|++|+||||+++.+|..+...
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            56899999999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.62  E-value=0.019  Score=53.21  Aligned_cols=24  Identities=21%  Similarity=0.136  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++.|+|++||||||+-+.|+..+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            688999999999999999998763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.61  E-value=0.021  Score=59.71  Aligned_cols=29  Identities=17%  Similarity=0.219  Sum_probs=25.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh---CCceee
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~fID  216 (345)
                      +++|.|++|+|||++|+.+|+.+   +.+|+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~  554 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIR  554 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence            69999999999999999999998   455543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.60  E-value=0.01  Score=56.56  Aligned_cols=27  Identities=22%  Similarity=0.146  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+..+.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            477899999999999999999987664

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.60  E-value=0.02  Score=55.82  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            46779999999999999999999665

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.59  E-value=0.02  Score=45.92  Aligned_cols=25  Identities=12%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.58  E-value=0.02  Score=56.48  Aligned_cols=27  Identities=19%  Similarity=0.068  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.||-.+.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            467799999999999999999997663

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.57  E-value=0.073  Score=53.48  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      +..|+++|++|+||||++..||..|   |  .-++++|.+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5678999999999999999999765   3  346888865

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.56  E-value=0.044  Score=49.89  Aligned_cols=32  Identities=9%  Similarity=-0.007  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC--ceeeCc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY--TPLSTK  218 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~--~fID~D  218 (345)
                      ..++|.|++|+||||+.+.+++.++.  .++++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            68999999999999999999998764  456654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.55  E-value=0.021  Score=55.73  Aligned_cols=26  Identities=27%  Similarity=0.152  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            46779999999999999999999765

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=94.54  E-value=0.18  Score=43.77  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      |+|.+.|-.|+||||++..||..|.     .-.||+|-
T Consensus         1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4578899999999999999999884     34678775

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.53  E-value=0.021  Score=55.76  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.||-.+.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            467799999999999999999997653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.51  E-value=0.022  Score=48.52  Aligned_cols=24  Identities=17%  Similarity=0.201  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|.|+|++|+||||+.+.|+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999998654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.50  E-value=0.023  Score=45.65  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.45  E-value=0.024  Score=48.34  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|.|+|.+|+||||+.+.|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.45  E-value=0.023  Score=47.64  Aligned_cols=24  Identities=17%  Similarity=0.237  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +.+|+|+|.+|+||||+...|+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.45  E-value=0.022  Score=55.75  Aligned_cols=26  Identities=19%  Similarity=0.050  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            46779999999999999999999765

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.44  E-value=0.022  Score=55.61  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            46779999999999999999999665

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.43  E-value=0.022  Score=55.15  Aligned_cols=27  Identities=11%  Similarity=0.065  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+.+.|+..+.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            467899999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.42  E-value=0.026  Score=49.32  Aligned_cols=24  Identities=13%  Similarity=0.003  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..|.|+|++||||||+.+.|...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            468899999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.40  E-value=0.024  Score=45.71  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.38  E-value=0.023  Score=55.69  Aligned_cols=27  Identities=11%  Similarity=-0.004  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+-.+.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            467799999999999999999987653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.35  E-value=0.031  Score=52.45  Aligned_cols=29  Identities=24%  Similarity=0.271  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+.+..+.|+|++|+||||+.+.|+ .+.
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            45668889999999999999999998 543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.31  E-value=0.018  Score=54.91  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+.|+|++||||||+.+.|+..+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            478899999999999999999998764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.29  E-value=0.017  Score=55.95  Aligned_cols=26  Identities=12%  Similarity=0.004  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            46779999999999999999999665

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.29  E-value=0.029  Score=45.27  Aligned_cols=24  Identities=13%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.28  E-value=0.018  Score=57.31  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      ..|.|+|++|+||||++..||..+.     .-++|+|.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            5799999999999999999998863     67888884

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.22  E-value=0.026  Score=55.54  Aligned_cols=26  Identities=15%  Similarity=0.144  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.++||-.+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            57889999999999999999998654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.21  E-value=0.029  Score=53.59  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=27.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D  218 (345)
                      ...|.|+|.+|+||||+...|+..+   |  ..++|.|
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            4579999999999999999999876   3  4567777

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.18  E-value=0.036  Score=45.57  Aligned_cols=26  Identities=12%  Similarity=0.061  Sum_probs=22.0

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+..+|+|+|.+|+||||+...+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34678999999999999999988754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.027  Score=56.50  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh----C-C-ceeeCc
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----G-Y-TPLSTK  218 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L----g-~-~fID~D  218 (345)
                      .-.|..+.|+|++||||||+.|.|+-.+    | - -++|.|
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~  176 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD  176 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence            3368899999999999999999998875    4 4 566664

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.10  E-value=0.031  Score=59.52  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCceeeCc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D  218 (345)
                      .+++|+|++|+|||++|+.||+.+   +.+|+..|
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~  623 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID  623 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence            479999999999999999999998   66665443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.06  E-value=0.017  Score=49.24  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+..|.|+|.+|+||||+.+.|+.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            467899999999999999998753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=94.02  E-value=0.079  Score=54.12  Aligned_cols=98  Identities=8%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC---------------ceeeCcHHHHHHHcCchh-------------hhhhcc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY---------------TPLSTKELLETFAKQTID-------------SWMLAE  236 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~---------------~fID~D~lIE~~~g~sI~-------------ei~~~~  236 (345)
                      +-+||.|||..++||||+...|-..-|.               .+.|.++ .|+.-|.+|.             .++++.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~-~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMA-MERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChH-HHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            4689999999999999999998644432               5666665 5666676654             357788


Q ss_pred             ChHHHHH-HHHHHHHHHhcCCC--EEEEcCCCCCcccCcHHHHHHHh-cC--cEEEEEc
Q 019172          237 GSDSVVN-GECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLY-AG--FTVWLSQ  289 (345)
Q Consensus       237 Gee~FRe-lE~~vL~~L~~~~~--~VIAtGGG~~~avlr~~~r~~L~-~G--~VV~Ld~  289 (345)
                      |-..|-. .|+    .|..-+.  .||+.-.|+  .+-++..|+.+. .+  ++++|..
T Consensus       109 GHvDF~~Ev~r----aL~~~DgAvlVvda~~GV--~~qT~~v~~~a~~~~lp~i~fINK  161 (548)
T 3vqt_A          109 GHQDFSEDTYR----VLTAVDSALVVIDAAKGV--EAQTRKLMDVCRMRATPVMTFVNK  161 (548)
T ss_dssp             CGGGCSHHHHH----HHHSCSEEEEEEETTTBS--CHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CcHHHHHHHHH----HHHhcCceEEEeecCCCc--ccccHHHHHHHHHhCCceEEEEec
Confidence            8766644 333    2333333  455566675  366777777665 44  4777765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.02  E-value=0.039  Score=46.15  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4468999999999999999998764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.01  E-value=0.03  Score=52.75  Aligned_cols=33  Identities=21%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D  218 (345)
                      +..|.++|.+|+||||++..||..+     ..-++|.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5678899999999999999999777     35678888

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.99  E-value=0.027  Score=47.44  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+.+.|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=93.97  E-value=0.35  Score=40.90  Aligned_cols=88  Identities=11%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             eEEEE-cCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhc---------cChHHHHHHHHHHHHHH
Q 019172          188 SIFLV-GDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLA---------EGSDSVVNGECDVLESL  252 (345)
Q Consensus       188 ~IvLI-G~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~---------~Gee~FRelE~~vL~~L  252 (345)
                      .|.++ +-.|+||||++..||..|.     .-++|+|.-      .+...++..         -+.+.+    .+.++++
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~------~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~l   72 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ------MSLTNWSKAGKAAFDVFTAASEKD----VYGIRKD   72 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT------CHHHHHHTTSCCSSEEEECCSHHH----HHTHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC------CCHHHHHhcCCCCCcEEecCcHHH----HHHHHHh
Confidence            35555 5678999999999988764     567888842      112222211         112222    2445566


Q ss_pred             hcCCC-EEEEcCCCCCcccCcHHHHHHHh-cCcEEEEEcC
Q 019172          253 SSHVR-AVVATLGGQQGAAARADKWQHLY-AGFTVWLSQT  290 (345)
Q Consensus       253 ~~~~~-~VIAtGGG~~~avlr~~~r~~L~-~G~VV~Ld~s  290 (345)
                      ....+ +||.|++|     ........+. .+.+|..-.+
T Consensus        73 ~~~yD~viiD~~~~-----~~~~~~~~l~~ad~viiv~~~  107 (206)
T 4dzz_A           73 LADYDFAIVDGAGS-----LSVITSAAVMVSDLVIIPVTP  107 (206)
T ss_dssp             TTTSSEEEEECCSS-----SSHHHHHHHHHCSEEEEEECS
T ss_pred             cCCCCEEEEECCCC-----CCHHHHHHHHHCCEEEEEecC
Confidence            55555 45567765     4666677776 5666665544

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.95  E-value=0.018  Score=55.86  Aligned_cols=26  Identities=15%  Similarity=0.003  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.||-.+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            46779999999999999999999655

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.94  E-value=0.027  Score=47.04  Aligned_cols=26  Identities=12%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ++..+|+|+|.+|+||||+...|+..
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            34568999999999999999999865

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.93  E-value=0.031  Score=54.36  Aligned_cols=35  Identities=11%  Similarity=0.139  Sum_probs=28.6

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~  217 (345)
                      ...+..++|.|++|+||||++..+|...|  ..|+++
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            33456788999999999999999998655  458888

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.92  E-value=0.038  Score=44.50  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988654

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=93.89  E-value=0.051  Score=48.22  Aligned_cols=26  Identities=12%  Similarity=0.014  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +++-++++|+||+||||.+-.+|.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46778899999999999999998887

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=93.89  E-value=0.025  Score=53.09  Aligned_cols=26  Identities=8%  Similarity=0.038  Sum_probs=22.7

Q ss_pred             CCceEEE--EcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFL--VGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvL--IG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3557888  8999999999999999877

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.87  E-value=0.036  Score=52.84  Aligned_cols=35  Identities=11%  Similarity=0.006  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +..|.|+|++|+||||++..||..+.     .-++|.|-.
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            56788999999999999999998763     446788753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.85  E-value=0.038  Score=53.04  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhh----------CC-ceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GY-TPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~-~fID~D~  219 (345)
                      ..+..+.|+|++||||||++..++...          |- -|||+.+
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            356789999999999999999999876          22 5788754

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=93.83  E-value=0.02  Score=55.49  Aligned_cols=29  Identities=14%  Similarity=-0.036  Sum_probs=26.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +++-|+|-|+-||||||+++.|++.|+..
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~   34 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASGG   34 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence            46789999999999999999999999753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.83  E-value=0.038  Score=44.62  Aligned_cols=23  Identities=9%  Similarity=0.131  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999998875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.82  E-value=0.043  Score=44.91  Aligned_cols=24  Identities=4%  Similarity=0.088  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...|..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.79  E-value=0.036  Score=53.68  Aligned_cols=27  Identities=7%  Similarity=0.041  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+.+.|+..+.
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            345799999999999999999987763

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=93.79  E-value=0.025  Score=58.29  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=26.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      +|+|+|++|+|||++|+.+|+.++..++.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            89999999999999999999999865544

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.78  E-value=0.039  Score=47.40  Aligned_cols=24  Identities=13%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...+..
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            456899999999999999988875

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.77  E-value=0.041  Score=50.13  Aligned_cols=26  Identities=15%  Similarity=0.045  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++.-++++|+||+||||.+..++.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46778889999999999999888776

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.76  E-value=0.039  Score=44.91  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            35799999999999999998864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.75  E-value=0.07  Score=51.68  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeC----cHHHHHHHcCchhhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLST----KELLETFAKQTIDSW  232 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~----D~lIE~~~g~sI~ei  232 (345)
                      ...+..+.|.|.+|+||||++..+|..+     ..-|+|+    |....+..|.....+
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l  118 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL  118 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhhe
Confidence            4467889999999999999999988653     4668998    555544556554443

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.74  E-value=0.037  Score=45.44  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+...+|+|+|.+|+||||+...|...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence            345578999999999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.73  E-value=0.04  Score=44.70  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998863

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.73  E-value=0.043  Score=44.33  Aligned_cols=24  Identities=13%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.72  E-value=0.042  Score=44.49  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.72  E-value=0.036  Score=56.40  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.69  E-value=0.038  Score=44.69  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      .+|+|+|.+|+||||+...|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            579999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.67  E-value=0.049  Score=46.72  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+|+|+|++|+||||+...|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.65  E-value=0.044  Score=44.75  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999988654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.62  E-value=0.044  Score=45.27  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.62  E-value=0.044  Score=45.40  Aligned_cols=26  Identities=8%  Similarity=-0.088  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+|+|+|.+|+||||+.+.|.....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            35799999999999999988876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.61  E-value=0.049  Score=44.17  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999998653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.60  E-value=0.045  Score=44.65  Aligned_cols=25  Identities=8%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.58  E-value=0.036  Score=51.82  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+.+..+.|+|++|+||||+.+.|+..+
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence            34567889999999999999999987544

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.57  E-value=0.046  Score=46.39  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...|..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999986

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.56  E-value=0.047  Score=44.06  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            5799999999999999998874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.55  E-value=0.047  Score=44.63  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.53  E-value=0.049  Score=43.84  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.52  E-value=0.036  Score=56.29  Aligned_cols=27  Identities=11%  Similarity=0.119  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+.+|.|+|++||||||+.+.|+..+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            577899999999999999999988774

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.51  E-value=0.048  Score=44.90  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999998753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.46  E-value=0.046  Score=51.21  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      .+..|.|+|.+|+||||++..||..+.     .-++|.|-
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~  136 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            467889999999999999999997763     44667763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.43  E-value=0.04  Score=56.18  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----CCceeeC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST  217 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g~~fID~  217 (345)
                      .|..+.|+|++||||||+.+.|+..+    |--.+|+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g  404 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG  404 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence            57889999999999999999998775    3344554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.43  E-value=0.051  Score=44.24  Aligned_cols=25  Identities=8%  Similarity=-0.007  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+|+|+|.+|+||||+...|...-
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3679999999999999999987643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.42  E-value=0.03  Score=46.14  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.41  E-value=0.047  Score=52.10  Aligned_cols=26  Identities=12%  Similarity=0.006  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            56789999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.40  E-value=0.051  Score=44.48  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            467999999999999999998754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.38  E-value=0.14  Score=52.03  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~  219 (345)
                      ...|.|+|.+|+||||++..||..|   |  .-++|.|.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            4579999999999999999999765   4  44677774

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.38  E-value=0.038  Score=56.33  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+..+.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            578899999999999999999988764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.37  E-value=0.059  Score=50.78  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ...|+|.|++|+|||.++..||..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            346999999999999999999997654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.37  E-value=0.037  Score=45.11  Aligned_cols=25  Identities=8%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ++..+|+|+|.+|+||||+...|..
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHc
Confidence            3446899999999999999998874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.36  E-value=0.057  Score=43.58  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|+|+|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.33  E-value=0.047  Score=44.55  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      .+|+|+|.+|+||||+...|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.31  E-value=0.054  Score=44.64  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.28  E-value=0.044  Score=51.57  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .++|+|+.||||||+.+.|+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4778999999999999999964

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.28  E-value=0.04  Score=45.30  Aligned_cols=25  Identities=12%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999988753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.28  E-value=0.058  Score=45.05  Aligned_cols=25  Identities=20%  Similarity=0.029  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999988643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.25  E-value=0.045  Score=54.48  Aligned_cols=34  Identities=12%  Similarity=0.009  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC------CceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg------~~fID~D~  219 (345)
                      ++.|.++|..|+||||++..||..|.      .-++|+|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            45788999999999999999996663      34788884

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.20  E-value=0.055  Score=52.83  Aligned_cols=29  Identities=17%  Similarity=0.058  Sum_probs=24.7

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+.+..+.|+|++|+||||+.+.|+..+.
T Consensus       212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          212 ALTGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             HHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             hcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence            45688999999999999999999985543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.20  E-value=0.056  Score=44.77  Aligned_cols=24  Identities=17%  Similarity=0.075  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999988654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.15  E-value=0.054  Score=44.80  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999988753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.12  E-value=0.062  Score=51.81  Aligned_cols=31  Identities=13%  Similarity=-0.034  Sum_probs=27.2

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..-+|..+.|+|++|+||||+.+.|+..+.-
T Consensus        67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4447899999999999999999999998763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.11  E-value=0.056  Score=53.57  Aligned_cols=27  Identities=11%  Similarity=0.033  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+.+.|+..+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            456789999999999999999998875

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=93.09  E-value=0.07  Score=51.37  Aligned_cols=49  Identities=18%  Similarity=0.131  Sum_probs=34.5

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH----HHHHHcCchhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL----LETFAKQTIDS  231 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l----IE~~~g~sI~e  231 (345)
                      ...+..+.|.|++|+||||++..++...     ...|+|++.-    ..+..|.....
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~  115 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS  115 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHH
Confidence            3457889999999999999999988653     3667887643    33344544443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.09  E-value=0.061  Score=44.45  Aligned_cols=23  Identities=4%  Similarity=0.118  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999988754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.05  E-value=0.061  Score=44.94  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.02  E-value=0.063  Score=53.40  Aligned_cols=31  Identities=13%  Similarity=-0.023  Sum_probs=27.3

Q ss_pred             hhhcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       181 ~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ...-+|..+.|+|++||||||+.+.||..+.
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3455788999999999999999999999875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.02  E-value=0.056  Score=47.80  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...+|+|+|.+|+||||+...|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHcC
Confidence            346899999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.01  E-value=0.065  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.97  E-value=0.065  Score=44.26  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ....+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.95  E-value=0.065  Score=44.90  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.94  E-value=0.066  Score=43.90  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.93  E-value=0.044  Score=45.24  Aligned_cols=23  Identities=9%  Similarity=0.215  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46799999999999999998874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.89  E-value=0.058  Score=45.87  Aligned_cols=25  Identities=12%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            4568999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.89  E-value=0.072  Score=44.51  Aligned_cols=24  Identities=8%  Similarity=0.170  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...+|+|+|.+|+||||+...|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            456899999999999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.88  E-value=0.071  Score=45.01  Aligned_cols=25  Identities=4%  Similarity=0.106  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999998764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.88  E-value=0.063  Score=51.67  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      .++.|+|+|.+|+||||+|-.|.+ .|+.++.=|...
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~  181 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE  181 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence            578899999999999999999976 589888777653

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=92.88  E-value=0.034  Score=54.12  Aligned_cols=33  Identities=15%  Similarity=-0.170  Sum_probs=28.1

Q ss_pred             hhhcCCceEEEEcCCCCChHHHH-HHHHHhhCCc
Q 019172          181 MQLLKGTSIFLVGDSTEVNEKVA-LELAVGLGYT  213 (345)
Q Consensus       181 ~~~l~~~~IvLIG~~GSGKSTVA-k~LA~~Lg~~  213 (345)
                      +...+++-|+|-|.-|+||||+. +.|++.|+-.
T Consensus         7 ~~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A            7 DVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             -CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             cccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            34456788999999999999999 9999998854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.87  E-value=0.046  Score=45.05  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +..+|+|+|.+|+||||+...|.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            45689999999999999998775

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.87  E-value=0.05  Score=54.39  Aligned_cols=35  Identities=23%  Similarity=0.111  Sum_probs=28.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l  220 (345)
                      +..|+++|++|+||||++..||..|   |  .-++++|.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            5678999999999999999999766   3  336788843

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.76  E-value=0.066  Score=48.64  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|.|+|.+|+||||+...|...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999998643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.74  E-value=0.072  Score=44.73  Aligned_cols=25  Identities=12%  Similarity=0.209  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.73  E-value=0.063  Score=45.43  Aligned_cols=27  Identities=11%  Similarity=0.089  Sum_probs=22.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+..+|+|+|.+|+||||+...+...
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            345568999999999999999877654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.68  E-value=0.076  Score=45.35  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.66  E-value=0.066  Score=54.49  Aligned_cols=26  Identities=27%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.65  E-value=0.075  Score=44.80  Aligned_cols=24  Identities=13%  Similarity=0.109  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            468999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.63  E-value=0.077  Score=44.20  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57999999999999999998753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.61  E-value=0.046  Score=56.03  Aligned_cols=27  Identities=19%  Similarity=0.149  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+..+.
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            478899999999999999999987664

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.61  E-value=0.071  Score=44.77  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999988654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.56  E-value=0.075  Score=44.11  Aligned_cols=25  Identities=4%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.50  E-value=0.056  Score=55.16  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            46778999999999999999998765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.48  E-value=0.077  Score=50.41  Aligned_cols=26  Identities=8%  Similarity=0.017  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++..|.|+|.+|+||||+...|+..+
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.48  E-value=0.085  Score=44.33  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+|+|+|.+|+||||+...|...-
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            4689999999999999999988654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.47  E-value=0.06  Score=55.77  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            57889999999999999999998655

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.47  E-value=0.069  Score=45.70  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=21.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999998853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=92.45  E-value=0.073  Score=53.43  Aligned_cols=36  Identities=14%  Similarity=0.078  Sum_probs=27.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHH--HHhh----CCceeeCcH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALEL--AVGL----GYTPLSTKE  219 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~L--A~~L----g~~fID~D~  219 (345)
                      ..+..+.|+|++||||||+++.+  +-.+    |--+++..+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            36788999999999999999994  3332    455676654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.45  E-value=0.084  Score=44.18  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999988754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.42  E-value=0.085  Score=43.76  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.40  E-value=0.063  Score=54.79  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+..+.|+|++||||||+.+.|+-.+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999998755

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.40  E-value=0.073  Score=55.24  Aligned_cols=26  Identities=23%  Similarity=0.079  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            57889999999999999999999765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=92.38  E-value=0.072  Score=51.71  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..+|+|+|.+||||||+++.+.-..+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3457899999999999999999864444

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.38  E-value=0.084  Score=44.51  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.37  E-value=0.086  Score=44.72  Aligned_cols=25  Identities=24%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4578999999999999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.34  E-value=0.031  Score=53.30  Aligned_cols=28  Identities=7%  Similarity=0.099  Sum_probs=23.5

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+.+..+.|+|++|+||||+.+.|+..
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            4457889999999999999999998643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.32  E-value=0.088  Score=44.05  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999988653

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=92.31  E-value=0.041  Score=54.29  Aligned_cols=28  Identities=7%  Similarity=-0.091  Sum_probs=22.7

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+++-|+|-|.-||||||+++.|++.|.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3556799999999999999999999886

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.30  E-value=0.084  Score=44.59  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.28  E-value=0.089  Score=43.95  Aligned_cols=24  Identities=8%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.25  E-value=0.078  Score=54.92  Aligned_cols=26  Identities=27%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|..+.|+|++||||||+.+.|+-.+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57889999999999999999999754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.25  E-value=0.091  Score=44.15  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999988753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.22  E-value=0.091  Score=44.31  Aligned_cols=25  Identities=4%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            4568999999999999999888754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=92.21  E-value=0.085  Score=47.08  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999988643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.20  E-value=0.091  Score=44.58  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.19  E-value=0.093  Score=44.08  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...|...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=92.19  E-value=0.096  Score=49.24  Aligned_cols=37  Identities=14%  Similarity=0.136  Sum_probs=30.0

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----------CCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----------g~~fID~D~  219 (345)
                      ...+..+.|.|++|+||||++..+|...           +.-|+|++.
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            3457889999999999999999999764           245888775

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=92.18  E-value=0.037  Score=53.54  Aligned_cols=27  Identities=7%  Similarity=-0.066  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +++-|+|-|.-||||||+++.|++.|.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            356799999999999999999999886

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.16  E-value=0.095  Score=44.03  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            458999999999999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.16  E-value=0.041  Score=56.10  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+..+.
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            478899999999999999999987664

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.05  E-value=0.075  Score=49.76  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      -+|.|+|++|+||||+.+.|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.03  E-value=0.095  Score=50.16  Aligned_cols=25  Identities=12%  Similarity=-0.036  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..|.|+|++||||||+-..|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5679999999999999999998764

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.03  E-value=0.14  Score=47.27  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D~  219 (345)
                      ..+|++.|.+|+||||++-.+|..+   |+.  ++|+|.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4579999999999999988887665   555  568885

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.02  E-value=0.085  Score=43.93  Aligned_cols=27  Identities=7%  Similarity=0.176  Sum_probs=21.5

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+..+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            335678999999999999999988753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.01  E-value=0.1  Score=49.98  Aligned_cols=26  Identities=8%  Similarity=-0.032  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+++|+|++|+||||+.+.++..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999887653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.98  E-value=0.097  Score=44.11  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...+|+|+|.+|+||||+...|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            467899999999999999998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.92  E-value=0.052  Score=55.56  Aligned_cols=27  Identities=7%  Similarity=0.155  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.|+..+.
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            478899999999999999999987664

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.90  E-value=0.096  Score=44.47  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +..+|+|+|.+|+||||+...|.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999885

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.88  E-value=0.1  Score=45.12  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            358999999999999999988754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.88  E-value=0.084  Score=52.78  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=21.8

Q ss_pred             cCCce--EEEEcCCCCChHHHHHHHHHh
Q 019172          184 LKGTS--IFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       184 l~~~~--IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      -.|..  |.|+|++||||||+.+.|+..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            35666  999999999999999999755

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.87  E-value=0.1  Score=45.17  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.87  E-value=0.089  Score=44.61  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=20.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+.+.+..
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999887655

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=91.86  E-value=0.11  Score=46.14  Aligned_cols=24  Identities=4%  Similarity=0.084  Sum_probs=19.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+-++++|.+|+|||+++..++..
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            457889999999999999886544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.83  E-value=0.096  Score=44.26  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999998853

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.83  E-value=0.096  Score=43.73  Aligned_cols=25  Identities=4%  Similarity=0.052  Sum_probs=20.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ....+|+|+|.+|+||||+...|..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999999999999998753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=91.83  E-value=0.14  Score=59.21  Aligned_cols=62  Identities=10%  Similarity=0.166  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc-----eeeCcH----HHHHHHcCchhhhhhc---cChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-----PLSTKE----LLETFAKQTIDSWMLA---EGSDSVVNGEC  246 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-----fID~D~----lIE~~~g~sI~ei~~~---~Gee~FRelE~  246 (345)
                      +++.+.|.|++|||||++|+.++..-...     ||+.++    ++.+..|..+++|+.+   .+|..++.+..
T Consensus      1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~ 1154 (1706)
T 3cmw_A         1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1154 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHH
Confidence            46668889999999999999988755444     888765    4555668888888754   26666666554

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=91.80  E-value=0.15  Score=48.51  Aligned_cols=37  Identities=14%  Similarity=0.077  Sum_probs=29.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh--h---------CCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG--L---------GYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~--L---------g~~fID~D~  219 (345)
                      ...+..+.|.|++|+||||++..+|..  +         +.-|||++.
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            335678899999999999999999986  2         244888765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.76  E-value=0.1  Score=44.46  Aligned_cols=23  Identities=4%  Similarity=0.046  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999998863

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.76  E-value=0.11  Score=43.93  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999988743

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.72  E-value=0.12  Score=44.95  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...+..++|.|.+|+|||+++-.+|.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            44578899999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.72  E-value=0.11  Score=44.42  Aligned_cols=24  Identities=13%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            458999999999999999988763

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.71  E-value=0.095  Score=44.68  Aligned_cols=25  Identities=16%  Similarity=0.053  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+|+|.+|+||||+...|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999988754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.65  E-value=0.084  Score=45.14  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ...+|+|+|.+|+||||+...|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.63  E-value=0.12  Score=43.36  Aligned_cols=23  Identities=17%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999865

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.62  E-value=0.11  Score=44.46  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...|..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            5799999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.59  E-value=0.1  Score=54.14  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..+.|+|++||||||+.+.|+-.+
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCC
Confidence            4668999999999999999998765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.59  E-value=0.11  Score=50.50  Aligned_cols=49  Identities=12%  Similarity=0.178  Sum_probs=34.9

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcH----HHHHHHcCchhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE----LLETFAKQTIDS  231 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~----lIE~~~g~sI~e  231 (345)
                      ...+..+.|.|++|+||||++..+|..+   |  .-|+|++.    ...+..|.....
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~  115 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS  115 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh
Confidence            3356789999999999999999998764   3  34788765    334445555443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.58  E-value=0.13  Score=50.55  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----------CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----------YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----------~~fID~D~  219 (345)
                      .+..+.|+|++|+||||++..|+-..-           .-|+|+..
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            577899999999999999997763322           45788765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=91.55  E-value=0.12  Score=44.00  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.52  E-value=0.067  Score=44.21  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=10.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999988763

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.47  E-value=0.091  Score=43.98  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +..+|+|+|.+|+||||+...|...-
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999886543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=91.45  E-value=0.11  Score=48.24  Aligned_cols=27  Identities=11%  Similarity=0.024  Sum_probs=23.2

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+..+.|.|.+|+|||+++..+|..
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            335678999999999999999999864

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=91.40  E-value=0.31  Score=44.82  Aligned_cols=52  Identities=19%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             chhHhhHHHHHHhhhhhc---CCceEEEEcC-CCCChHHHHHHHHHhh---C--CceeeCc
Q 019172          167 PDIVESWESLTAGSMQLL---KGTSIFLVGD-STEVNEKVALELAVGL---G--YTPLSTK  218 (345)
Q Consensus       167 ~~~~~~~~~l~a~~~~~l---~~~~IvLIG~-~GSGKSTVAk~LA~~L---g--~~fID~D  218 (345)
                      ....|..+.|...+.-..   ..+.|.++|. +|+||||++..||..|   |  .-+||+|
T Consensus        60 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D  120 (271)
T 3bfv_A           60 SPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD  120 (271)
T ss_dssp             SHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            345566776666443322   2456777765 7999999999998876   3  4578988

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.30  E-value=0.13  Score=43.99  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+...|...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            357999999999999999988653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.26  E-value=0.13  Score=51.66  Aligned_cols=28  Identities=11%  Similarity=0.160  Sum_probs=24.2

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+..+.|+|++|+||||+++.++..+
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4467889999999999999999998654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=91.23  E-value=0.13  Score=44.53  Aligned_cols=26  Identities=23%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ....+|+|+|.+|+||||+...|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            35678999999999999999988754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=91.22  E-value=0.12  Score=51.40  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      .+..|.++|+.|+||||++..||..+.     .-++|.|-
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            356788999999999999999998763     45678774

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.22  E-value=0.12  Score=44.54  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999998864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.20  E-value=0.12  Score=45.01  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999998754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.16  E-value=0.13  Score=43.29  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -.+|+|+.|+|||||-.++.-.|
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999887666

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.16  E-value=0.13  Score=43.82  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+|||||-..+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=91.14  E-value=0.096  Score=43.68  Aligned_cols=23  Identities=9%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +..+|+|+|.+|+||||+...|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999873

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=91.11  E-value=0.26  Score=46.07  Aligned_cols=52  Identities=13%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             hhHhhHHHHHHhhhhhc---CCceEEEEcC-CCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          168 DIVESWESLTAGSMQLL---KGTSIFLVGD-STEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       168 ~~~~~~~~l~a~~~~~l---~~~~IvLIG~-~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      ...|....|...+...+   ..+.|.++|. +|+||||++..||..|.     .-+||+|-
T Consensus        83 ~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A           83 SAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            34566666655433222   3467888886 79999999999988763     45788885

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=91.10  E-value=0.22  Score=43.41  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=27.1

Q ss_pred             CceEEEEc-CCCCChHHHHHHHHHhhCCc------eeeCcHH
Q 019172          186 GTSIFLVG-DSTEVNEKVALELAVGLGYT------PLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG-~~GSGKSTVAk~LA~~Lg~~------fID~D~l  220 (345)
                      ++.|.+++ -.|+||||++-.||..|...      +||+|--
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            34566654 57899999999999988765      8899843

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=91.09  E-value=0.1  Score=51.73  Aligned_cols=25  Identities=8%  Similarity=-0.017  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+..+.|+|++||||||+.+.|+-.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3448899999999999999999874

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=90.94  E-value=0.15  Score=46.50  Aligned_cols=26  Identities=8%  Similarity=-0.015  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +++-++++|.||+||||.+-.+|.++
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45667889999999999999888776

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=90.88  E-value=0.14  Score=51.95  Aligned_cols=25  Identities=12%  Similarity=0.024  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+.|+|++||||||+.+.|+-.+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            5688999999999999999997763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=90.86  E-value=0.16  Score=52.02  Aligned_cols=29  Identities=17%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..+....++|.|++|+||||+.+.++..+
T Consensus       200 ~~~~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          200 QLAGHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             HHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999988754

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=90.72  E-value=0.16  Score=51.04  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...|.|+||.|.||||+|+.++.
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            36788999999999999999995

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.68  E-value=0.14  Score=56.31  Aligned_cols=24  Identities=8%  Similarity=0.032  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .|..+.|+|++||||||+.+.|+.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            578899999999999999999994

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=90.66  E-value=0.16  Score=44.02  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999998754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=90.55  E-value=0.15  Score=50.09  Aligned_cols=24  Identities=8%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ..++|.|++|+||||+...++..|
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            389999999999999999999877

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=90.41  E-value=0.12  Score=51.17  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      -+|.|+|.+|+||||+.+.|+...
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCC
Confidence            358999999999999999987543

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=90.37  E-value=0.32  Score=43.60  Aligned_cols=30  Identities=17%  Similarity=0.026  Sum_probs=25.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+.+.+++|+|++|+|||.++..++..++.
T Consensus       105 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~  134 (237)
T 2fz4_A          105 WLVDKRGCIVLPTGSGKTHVAMAAINELST  134 (237)
T ss_dssp             HTTTSEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             HHhCCCEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            445667999999999999999999988753

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.32  E-value=0.15  Score=50.74  Aligned_cols=23  Identities=13%  Similarity=-0.058  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ...|.|+|+.|.||||+++.++.
T Consensus       147 ~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          147 PGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Confidence            45788999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	345
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	3e-12
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	5e-10
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	6e-06
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	4e-04

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W ++  + V+    +  E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEG 111

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y++    +++ + L +   +     D+ V+     L+  V         ++   L   I 
Sbjct: 5   YDWYQTESQVVITLMI---KNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLE-LLHPII 60

Query: 141 PTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTA 178
           P ++ + +   ++ I LKK +           WE L  
Sbjct: 61  PEQSTFKVLSTKIEIKLKKPEA--------VRWEKLEG 90

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 98  SLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157
              ++ SKD+ V+ + + LT            +    LF  I P ++     +  ++  L
Sbjct: 18  EFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL 77

Query: 158 KKQDPELKWPDIVES 172
           +K +    WP + + 
Sbjct: 78  RKGESGQSWPRLTKE 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.9
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.9
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.56
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.37
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.35
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.3
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.3
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.25
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.24
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.23
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.21
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.19
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.15
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.11
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.09
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.08
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.07
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.01
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.99
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	98.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.89
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.87
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	98.86
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.64
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.63
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.46
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.38
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.34
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.25
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.17
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.16
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.0
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.96
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	97.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.88
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.85
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.8
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.64
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.56
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.55
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.54
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.52
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.35
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.27
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.13
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.09
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.02
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.97
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.96
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.94
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.92
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.85
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.83
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.81
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.75
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.69
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.65
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.63
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.59
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.44
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.35
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.33
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.33
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.27
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.21
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.15
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.08
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.93
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.87
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.85
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.85
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.78
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.69
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.69
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.67
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.65
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.64
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.63
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.62
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.6
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.6
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.59
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.54
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.53
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.49
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.4
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.39
d1okkd2	207	GTPase domain of the signal recognition particle r	95.36
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.24
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.21
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.18
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.12
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	95.08
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.0
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.9
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.83
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.83
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.8
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.77
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.7
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.67
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.62
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.52
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.51
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.25
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.16
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.15
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.07
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.75
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.64
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.59
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.54
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.54
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.51
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.47
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.42
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.39
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.35
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.35
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.35
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.32
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.27
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.15
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.06
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.05
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.04
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.03
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.02
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.97
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.84
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.82
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.81
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	92.75
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.71
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.69
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.67
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.62
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.61
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.57
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.54
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.51
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.5
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.48
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.48
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.44
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.44
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.39
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.36
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.34
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.23
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.23
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.15
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.12
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.11
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.99
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.92
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.91
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.91
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.86
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.84
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.81
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	91.72
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.71
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.64
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.64
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.64
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.48
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.46
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.37
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.26
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.25
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	91.21
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.21
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.2
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.14
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.02
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.97
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.93
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.78
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.68
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.66
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.64
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.62
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.61
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	90.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.51
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.49
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.3
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.29
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.24
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.2
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.15
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.99
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.97
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.84
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.48
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	89.37
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.2
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.17
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.95
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.88
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.53
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.32
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.17
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.79
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.4
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	87.39
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.18
d1g6sa_	427	5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha	87.09
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	86.93
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	86.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	86.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.19
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.13
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.18
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.87
d1xpua3	289	Transcription termination factor Rho, ATPase domai	83.11
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.74
d1rf6a_	427	5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha	81.75
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.32

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=5.1e-25  Score=186.99  Aligned_cols=117  Identities=22%  Similarity=0.235  Sum_probs=103.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      .+|+|+|+|||||||+|+.||++||++|+|+|++||+..|+++.+++...|++.||+.|.+.+.++....+.||++||| 
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~-   80 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG-   80 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT-
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhcccccccccccccc-
Confidence            3689999999999999999999999999999999999999999999999999999999999998887777889999998 


Q ss_pred             CcccCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccc
Q 019172          267 QGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSV  309 (345)
Q Consensus       267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~  309 (345)
                        .+..+.+|..+..+.+|||+++.+.. ..|  +.+...|++
T Consensus        81 --~~~~~~~~~~l~~~~~I~L~~~~~~~-~~R--~~~~~~Rpl  118 (165)
T d2iyva1          81 --AVTSPGVRAALAGHTVVYLEISAAEG-VRR--TGGNTVRPL  118 (165)
T ss_dssp             --GGGSHHHHHHHTTSCEEEEECCHHHH-HHH--TTCCCCCSS
T ss_pred             --ccccccccccccccceeeeeccchhh-hhc--ccccccchh
Confidence              48999999999999999999999866 455  333345544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.90  E-value=2.7e-24  Score=183.32  Aligned_cols=141  Identities=25%  Similarity=0.282  Sum_probs=113.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|+++|+..|+++.+++..+||+.|+++|.+++.+... .+.++++||| 
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~~-   80 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVAT-PNRVVATGGG-   80 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEECCTT-
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhcc-ccceeccccc-
Confidence            56999999999999999999999999999999999999999999999999999999999999988765 5578888888 


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhh-cccccccc------------------ccceeeeeeccCCCCh
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVL-SLHLRSVT------------------SYFVRLEFVSSFSRTN  326 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~-~~h~R~~~------------------~~~~~le~i~~~~r~~  326 (345)
                        .+..++++++|+ .|.+|||+++.+.. ..|.... ....|+..                  -|.....++.|-++++
T Consensus        81 --~~~~~~~~~~l~~~~~~v~L~~~~e~l-~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~Id~~~~~  157 (170)
T d1e6ca_          81 --MVLLEQNRQFMRAHGTVVYLFAPAEEL-ALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPP  157 (170)
T ss_dssp             --GGGSHHHHHHHHHHSEEEEEECCHHHH-HHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCH
T ss_pred             --chhhhHHHHhhhccceeEEEecCchhH-HHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEEcCCCCH
Confidence              489999999997 79999999999865 4443211 12222211                  1222234577888888


Q ss_pred             HHHhhh
Q 019172          327 EHIMAR  332 (345)
Q Consensus       327 ~~~~~~  332 (345)
                      +|+..+
T Consensus       158 ~eiv~~  163 (170)
T d1e6ca_         158 AAIVCE  163 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.90  E-value=3.2e-24  Score=182.64  Aligned_cols=114  Identities=22%  Similarity=0.194  Sum_probs=97.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~  266 (345)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|+++|+..|+++.+++...|+++||+.|..+++.+......|+++|||.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~   80 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   80 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch
Confidence            57999999999999999999999999999999999999999999999999999999999999999998888999999983


Q ss_pred             CcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccc
Q 019172          267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRS  308 (345)
Q Consensus       267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~  308 (345)
                         +    ++..++ .+.+|||++|.+.. ..|......+.||
T Consensus        81 ---~----~~~~l~~~~~vI~L~~s~~~l-~~Rl~~~~~~~Rp  115 (161)
T d1viaa_          81 ---V----NVSNLEKAGFCIYLKADFEYL-KKRLDKDEISKRP  115 (161)
T ss_dssp             ---G----GSTTGGGGCEEEEEECCHHHH-TTCCCGGGTTTSC
T ss_pred             ---h----hHHHHHhCCeEEEeccchHHH-HHHHccccccccc
Confidence               3    233454 79999999999866 5554333333443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=6.3e-15  Score=118.44  Aligned_cols=106  Identities=23%  Similarity=0.276  Sum_probs=84.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      .++|+|+|++||||||||+.||++||++|+|+|.......|..........|+...+.+..............++.+...
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            46899999999999999999999999999999999999999888877777788888877766655555555566665554


Q ss_pred             CCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172          266 QQGAAARADKWQHLY-AGFTVWLSQTEAMG  294 (345)
Q Consensus       266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~  294 (345)
                         ..........+. .+..+|+..+....
T Consensus        82 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~  108 (169)
T d1kaga_          82 ---SVKSRETRNRLSARGVVVYLETTIEKQ  108 (169)
T ss_dssp             ---GGGSHHHHHHHHHHSEEEECCCCHHHH
T ss_pred             ---hhhhhhhhHHhhhcceeeeccCcHHHh
Confidence               256666666665 68899999887654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8.9e-14  Score=114.79  Aligned_cols=141  Identities=14%  Similarity=0.031  Sum_probs=85.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhh---hhhccChHHHHHHHHHHHHHHhcCCCEEEE
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDS---WMLAEGSDSVVNGECDVLESLSSHVRAVVA  261 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~e---i~~~~Gee~FRelE~~vL~~L~~~~~~VIA  261 (345)
                      .++-|+|+|++||||||+|+.||++||+++++.|++.+.........   +....++...+.++..+...+......++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV   84 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCceEee
Confidence            45668889999999999999999999999999999875543222111   112223333444444444444443334444


Q ss_pred             cCCCCCcccCcHHHHHHHhc----CcEEEEEcChhhhchhhhhhhccccc---cccccceeee---------eeccCCCC
Q 019172          262 TLGGQQGAAARADKWQHLYA----GFTVWLSQTEAMGKLLRVFVLSLHLR---SVTSYFVRLE---------FVSSFSRT  325 (345)
Q Consensus       262 tGGG~~~avlr~~~r~~L~~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R---~~~~~~~~le---------~i~~~~r~  325 (345)
                      .++      .....++.++.    ..+|||++|++.. ..|...+..|..   .+.+++..+|         .+.|.+++
T Consensus        85 ~~~------~~~~~~~~~~~~~~~~~~v~l~~~~e~~-~~Rl~~R~~~~~~~~~~~~~~~~~e~~~~~e~~~~~id~~~~  157 (171)
T d1knqa_          85 CSA------LKKHYRDLLREGNPNLSFIYLKGDFDVI-ESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQP  157 (171)
T ss_dssp             CCC------CSHHHHHHHHTTCTTEEEEEEECCHHHH-HHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEECSSC
T ss_pred             ccc------hHHHHHHHHHHhCCCceEEeecCCHHHH-HHHHHhCcCCCccHHHHHhhHHHhhCCCcccCCEEEEeCCCC
Confidence            443      56667777752    2588999998865 455433322211   1233333333         34788899


Q ss_pred             hHHHhhh
Q 019172          326 NEHIMAR  332 (345)
Q Consensus       326 ~~~~~~~  332 (345)
                      +|+|-.+
T Consensus       158 ~e~v~~~  164 (171)
T d1knqa_         158 LEGVVAS  164 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.37  E-value=9.5e-13  Score=112.34  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc------hhhhhhccC----hHHHHHHHHHHHHH-Hh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT------IDSWMLAEG----SDSVVNGECDVLES-LS  253 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s------I~ei~~~~G----ee~FRelE~~vL~~-L~  253 (345)
                      .+++|+|+|+|||||||+|+.||+.+|+++|++|+++++.....      +.+.+. .|    .+.........+.. ..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHh-cCCcccceeehhhhhhHhhhccc
Confidence            47889999999999999999999999999999999988754211      112211 11    11111111111111 11


Q ss_pred             cCCCEEEEcCCCCCcccCcHHHHHHHhc-----CcEEEEEcChhhhchhhhhhhccc----c---------cccccccee
Q 019172          254 SHVRAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAMGKLLRVFVLSLH----L---------RSVTSYFVR  315 (345)
Q Consensus       254 ~~~~~VIAtGGG~~~avlr~~~r~~L~~-----G~VV~Ld~s~a~~~~~Rv~v~~~h----~---------R~~~~~~~~  315 (345)
                      ...++|+ .|.     +...+....+..     ..+|||+++++.. ..|...++..    .         .++..++..
T Consensus        81 ~~~~~vi-d~~-----~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l-~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~~  153 (189)
T d1zaka1          81 QENGWLL-DGY-----PRSYSQAMALETLEIRPDTFILLDVPDELL-VERVVFDDTEEKVKLRLETYYQNIESLLSTYEN  153 (189)
T ss_dssp             HHTCEEE-ESC-----CCSHHHHHHHHTTTCCCSEEEEEECCHHHH-HHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcEEe-ecc-----chhhHHHhhhhhcccccchheeechhhhhh-hhhccccchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2234444 444     244444555541     4699999998765 3342221111    1         134455544


Q ss_pred             eeeeccCCCChHHHhhhcchhhhhhhh
Q 019172          316 LEFVSSFSRTNEHIMARKPAVMKTLVT  342 (345)
Q Consensus       316 le~i~~~~r~~~~~~~~~~~~~~~~~~  342 (345)
                      .-...|-.++.++|.++=-++++.+..
T Consensus       154 ~~~~Id~~~~idev~~~I~~~l~~il~  180 (189)
T d1zaka1         154 IIVKVQGDATVDAVFAKIDELLGSILE  180 (189)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            445567788999998887777766644

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=8.4e-13  Score=112.28  Aligned_cols=143  Identities=13%  Similarity=0.079  Sum_probs=83.4

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHHHhc----C
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSS----H  255 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~L~~----~  255 (345)
                      .+.|+|+|+|||||||+|+.||+.+|+++|++|+++.+..      |..+..++...+..........+..++..    .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            4789999999999999999999999999999999987653      22344454444333333333333333332    2


Q ss_pred             CCEEEEcCCCCCcccCcHHHH-HHHh-----cCcEEEEEcChhhhchhhhhhhccc----------ccccccccee--ee
Q 019172          256 VRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAMGKLLRVFVLSLH----------LRSVTSYFVR--LE  317 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r-~~L~-----~G~VV~Ld~s~a~~~~~Rv~v~~~h----------~R~~~~~~~~--le  317 (345)
                      .++|+....+.   ....+.+ ..+.     ...+|||+++.+.. ..|..-++..          ..++..++..  .-
T Consensus        82 ~g~i~dg~p~~---~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~-~~R~~~~~~~~~r~~~y~~~~~~v~~~y~~~~~~  157 (180)
T d1akya1          82 NGFILDGFPRT---IPQAEKLDQMLKEQGTPLEKAIELKVDDELL-VARITNADALKKRLAAYHAQTEPIVDFYKKTGIW  157 (180)
T ss_dssp             SCEEEESCCCS---HHHHHHHHHHHHHHTCCCCEEEEEECCHHHH-HHHHHSHHHHHHHHHHHHHHTTHHHHHHHHHTCE
T ss_pred             CCEeccCccch---hhhHHHHHhhHHHcCCCceeeeecccccchh-hhcccccccccchHHHHHHHHHHHHHHHHhcCCE
Confidence            34555443331   1111222 2232     24699999998764 3332111111          1123333322  12


Q ss_pred             eeccCCCChHHHhhh
Q 019172          318 FVSSFSRTNEHIMAR  332 (345)
Q Consensus       318 ~i~~~~r~~~~~~~~  332 (345)
                      ...|-.+++|+|..+
T Consensus       158 ~~Id~~~~~eeV~~~  172 (180)
T d1akya1         158 AGVDASQPPATVWAD  172 (180)
T ss_dssp             EEEETTSCHHHHHHH
T ss_pred             EEEECCCCHHHHHHH
Confidence            346888999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.30  E-value=2.2e-13  Score=112.39  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhC-CceeeCcHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLET  223 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg-~~fID~D~lIE~  223 (345)
                      ..++++|+|+|+|||||||+|+.||+.|+ +.+++.|++..+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~   43 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE   43 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence            35789999999999999999999999997 566666665543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.5e-12  Score=106.97  Aligned_cols=106  Identities=12%  Similarity=0.024  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHHHhc--CCCE
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSS--HVRA  258 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~L~~--~~~~  258 (345)
                      |+|+|+|+|||||||+|+.||+.+|+.++++++++.+..      +..+.+++....-.........+...+..  ..+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            689999999999999999999999999999999987653      12344444432211111222112222211  1234


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhhchhh
Q 019172          259 VVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMGKLLR  298 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~R  298 (345)
                      +|..|..     -+......+.     -..+|||+++.++. ..|
T Consensus        81 ~i~~g~p-----r~~~~~~~~~~~~~~~~~vi~L~~~~~~l-~~R  119 (179)
T d1e4va1          81 FLLDGFP-----RTIPQADAMKEAGINVDYVLEFDVPDELI-VDR  119 (179)
T ss_dssp             EEEESCC-----CSHHHHHHHHHTTCCCSEEEEEECCHHHH-HHH
T ss_pred             eeecccc-----cchHHhhhhhhccCCceEEEEeccchhhh-hhh
Confidence            5545542     3333344443     25699999999865 344

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.25  E-value=7.9e-12  Score=104.55  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |+|+|+|+|||||||+|+.||+.+|+++|++|+++.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~   39 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAM   39 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhh
Confidence            679999999999999999999999999999999987643

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.24  E-value=6.4e-12  Score=103.35  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceee--CcHHHHHHHcCchhhhhh---ccChHHHHHHHHHHHHHHhcCCCE
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQTIDSWML---AEGSDSVVNGECDVLESLSSHVRA  258 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID--~D~lIE~~~g~sI~ei~~---~~Gee~FRelE~~vL~~L~~~~~~  258 (345)
                      |.|+-|+|+|+|||||||+|+.||+++|+++++  .|++.....+.....+..   ......+... ..++.........
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIA-ADVAGRYAKEGYF   80 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHH-HHHHHHHHHTSCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHH-HHHHHHHHhcCCC
Confidence            567889999999999999999999999999875  566554433333222211   1111111211 2233344444556


Q ss_pred             EEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhh
Q 019172          259 VVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMG  294 (345)
Q Consensus       259 VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~  294 (345)
                      ||..+..      ++..+..+.    ...+|||+++++..
T Consensus        81 vi~~~~~------~~~~~~~~~~~~~~~~~i~l~~~~e~~  114 (176)
T d1zp6a1          81 VILDGVV------RPDWLPAFTALARPLHYIVLRTTAAEA  114 (176)
T ss_dssp             EEECSCC------CTTTTHHHHTTCSCEEEEEEECCHHHH
T ss_pred             eEecccc------cHHHHHHHHhcccccccccCCCCHHHH
Confidence            7766553      222333332    34689999998855

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.23  E-value=2.7e-11  Score=104.81  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------Cchhhhhhc---cChHHHHHHHHHHHHHHhcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLA---EGSDSVVNGECDVLESLSSH  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~---~Gee~FRelE~~vL~~L~~~  255 (345)
                      +.++|+|+|+|||||||+|+.||+.+|+.+|++|+++.+...      ..+.+.+..   -..+.+..+..+.+.... .
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~-~   83 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT-Q   83 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh-h
Confidence            568999999999999999999999999999999999876442      112222222   123455555555555443 2


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHhc----CcEEEEEcChhhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAMG  294 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~~----G~VV~Ld~s~a~~  294 (345)
                      .++|+ .|.     +.+......|..    +.||||+++.+..
T Consensus        84 ~~~il-dGf-----Pr~~~q~~~l~~~~~~~~vi~L~v~~~~l  120 (189)
T d2ak3a1          84 YNWLL-DGF-----PRTLPQAEALDRAYQIDTVINLNVPFEVI  120 (189)
T ss_dssp             SCEEE-ESC-----CCSHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             cCccc-ccc-----cchhhHHHHhhhcCcceEEEEEeccchhh
Confidence            45555 333     566666666653    6799999997654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.22  E-value=7e-12  Score=102.55  Aligned_cols=40  Identities=20%  Similarity=0.185  Sum_probs=37.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      -++|+|+|+|||||||+|+.||++||++++|+|+.+++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~   43 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ   43 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhc
Confidence            4789999999999999999999999999999999988643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.21  E-value=3.9e-11  Score=102.08  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      -++..|+|+|+|||||||+|+.||+.+|+.+|++|+++.+..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~   45 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ   45 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHh
Confidence            356789999999999999999999999999999999987654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.19  E-value=5.7e-11  Score=96.92  Aligned_cols=147  Identities=12%  Similarity=-0.036  Sum_probs=74.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCchhh----hhh-------ccChHHHHHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQTIDS----WML-------AEGSDSVVNGECDVLE  250 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~sI~e----i~~-------~~Gee~FRelE~~vL~  250 (345)
                      |..+-|+|+|+|||||||+|+.||+.|+.++++.  |.+.....+.....    .+.       ......++....+...
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            3567799999999999999999999999988654  44444322211110    000       0011123333344445


Q ss_pred             HHhcCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhhchhhhhhhccccc-------cccccceeeeeecc
Q 019172          251 SLSSHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMGKLLRVFVLSLHLR-------SVTSYFVRLEFVSS  321 (345)
Q Consensus       251 ~L~~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~~~~Rv~v~~~h~R-------~~~~~~~~le~i~~  321 (345)
                      .+......+|...............+..+.  ...+|||++++++. ..|...+..+..       ........-.++.|
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~-~~R~~~R~~~~~~~~~~~~~~~~~~~~~dl~ID  159 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA-EGRETARGDRVAGMAAKQAYVVHEGVEYDVEVD  159 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHH-HHHHHHTSSSCTTHHHHHTTGGGTTCCCSEEEE
T ss_pred             HHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHH-HHHHHhcCCcchhhhhhhhhhhhcCCCCCEEEE
Confidence            555444444433321100112222233332  23579999998865 444333222211       11112223345567


Q ss_pred             CCC-ChHHHhh
Q 019172          322 FSR-TNEHIMA  331 (345)
Q Consensus       322 ~~r-~~~~~~~  331 (345)
                      -+. ++||+-+
T Consensus       160 ts~~s~ee~a~  170 (178)
T d1qhxa_         160 TTHKESIECAW  170 (178)
T ss_dssp             TTSSCHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            665 5777654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=4.2e-11  Score=101.05  Aligned_cols=139  Identities=15%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHHHHhc---CCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSS---HVR  257 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~~L~~---~~~  257 (345)
                      |+|+|+|+|||||||+|+.||+.||+.+|++|+++.+...      ..+..++.. |.....+....++.+...   ...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDA-GDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHhhCccccc
Confidence            6899999999999999999999999999999999876542      123333333 333334455555554332   133


Q ss_pred             EEEEcCCCCCcccCcHHHHHHHh-----c----CcEEEEEcChhhhchhhhhh------------hcccc-----ccccc
Q 019172          258 AVVATLGGQQGAAARADKWQHLY-----A----GFTVWLSQTEAMGKLLRVFV------------LSLHL-----RSVTS  311 (345)
Q Consensus       258 ~VIAtGGG~~~avlr~~~r~~L~-----~----G~VV~Ld~s~a~~~~~Rv~v------------~~~h~-----R~~~~  311 (345)
                      .+|..|++     ........+.     .    ..+++|+++.+.. ..|..-            +++..     .++..
T Consensus        80 ~~i~d~~p-----~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l-~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~  153 (181)
T d2cdna1          80 GFILDGYP-----RSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL-LERLKGRGRADDTDDVILNRMKVYRDETAPLLE  153 (181)
T ss_dssp             CEEEESCC-----CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH-HHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred             cEEecccc-----cchhHHHHHHHHHHhcCCCccEEEeccCCHHHH-HhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence            45555553     3333333332     1    3589999998754 222211            11110     02333


Q ss_pred             cceeeeeeccCCCChHHHhhh
Q 019172          312 YFVRLEFVSSFSRTNEHIMAR  332 (345)
Q Consensus       312 ~~~~le~i~~~~r~~~~~~~~  332 (345)
                      ++..--...|-..+.|||-++
T Consensus       154 ~y~~~~~~Id~~~s~eeV~~~  174 (181)
T d2cdna1         154 YYRDQLKTVDAVGTMDEVFAR  174 (181)
T ss_dssp             HTTTTEEEEECCSCHHHHHHH
T ss_pred             HHhcCeEEEECCCCHHHHHHH
Confidence            332222346778899998876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.15  E-value=5.7e-11  Score=100.48  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |+|+|+|+|||||||+|+.||+.||++++++++++.+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~   39 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAI   39 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhh
Confidence            679999999999999999999999999999999986543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.11  E-value=1.3e-10  Score=98.71  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ++++|+|+|+|||||||+|+.||+.+|+.+|++++++.+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~   41 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAM   41 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHH
Confidence            5789999999999999999999999999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=3.5e-10  Score=96.40  Aligned_cols=104  Identities=12%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc---Cc----hhhhhhccCh----HHHHHHHHHHHHHHhc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QT----IDSWMLAEGS----DSVVNGECDVLESLSS  254 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g---~s----I~ei~~~~Ge----e~FRelE~~vL~~L~~  254 (345)
                      ...|+|+|+|||||||+|+.||+.||+.+|++++++.+...   ..    +...+.....    ...+.....+......
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKA   87 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhcc
Confidence            45799999999999999999999999999999999866442   12    3333333221    1112222223333333


Q ss_pred             CCCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172          255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       255 ~~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~  294 (345)
                      ..+.+|-.|..     ...+.+..+.     -+.+|+|+++.++.
T Consensus        88 ~~~~~vl~g~p-----~~~~q~~~~~~~~~~~~~~i~l~~~~e~~  127 (196)
T d1ukza_          88 NKHKFLIDGFP-----RKMDQAISFERDIVESKFILFFDCPEDIM  127 (196)
T ss_dssp             TCCEEEEETCC-----CSHHHHHHHHHHTCCCSEEEEEECCHHHH
T ss_pred             CCCceeeeccc-----hhHHHHHHHHHhccccceeeccCCCHHHH
Confidence            34555555553     3333334332     36799999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=1.9e-10  Score=98.34  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccCh---HHHHHHHHHHHHHHhcC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGS---DSVVNGECDVLESLSSH  255 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Ge---e~FRelE~~vL~~L~~~  255 (345)
                      +++.|+|+|+|||||||+|+.||+.+|+++|++++++.+...      ..+.+.+...+.   +....+..+.+.+....
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            567899999999999999999999999999999999887642      223333332211   12222222222222222


Q ss_pred             CCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172          256 VRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG  294 (345)
Q Consensus       256 ~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~  294 (345)
                      .+.+|..|.     +-+......+.     -..+++++.+.+..
T Consensus        87 ~~g~ildg~-----pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~  125 (194)
T d3adka_          87 SKGFLIDGY-----PREVKQGEEFERKIGQPTLLLYVDAGPETM  125 (194)
T ss_dssp             CSCEEEESC-----CSSHHHHHHHHHHTCCCSEEEEEECCHHHH
T ss_pred             cccceeeec-----cchhHHHHHHHHHhCCccchhccccchhhh
Confidence            334555555     33444344442     26789999887654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=102.21  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc--hhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--IDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s--I~ei~~~~Gee~FRelE~~vL~~L~~~~~~V  259 (345)
                      ..++|+.|+|+|+|||||||||+.||+.|++.++++|.+..+.....  ....+...+...+.+.....+..+......+
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC   94 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            34478899999999999999999999999999999999887665432  2222222223333333344555555555444


Q ss_pred             E-EcCCCCCcccCcHHHHHHH
Q 019172          260 V-ATLGGQQGAAARADKWQHL  279 (345)
Q Consensus       260 I-AtGGG~~~avlr~~~r~~L  279 (345)
                      + ++.++   .......+..+
T Consensus        95 ~~~~~~~---~~~~~~~~~~~  112 (195)
T d1x6va3          95 ITSFISP---YTQDRNNARQI  112 (195)
T ss_dssp             EEECCCC---CHHHHHHHHHH
T ss_pred             ccccccc---hHHHHHHHHHH
Confidence            4 44444   23444444444

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.07  E-value=1.1e-10  Score=94.54  Aligned_cols=106  Identities=10%  Similarity=-0.031  Sum_probs=58.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCce-eeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f-ID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG  265 (345)
                      +-|+|+|++||||||+|+.||+.++..+ +++|.+.+...+..........+.........+...........+|..+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~   82 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIA   82 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            3589999999999999999999999875 577776554433333322222222222222333344444444444433332


Q ss_pred             CCcccCcHHHHHHH-h--cC---cEEEEEcChhhh
Q 019172          266 QQGAAARADKWQHL-Y--AG---FTVWLSQTEAMG  294 (345)
Q Consensus       266 ~~~avlr~~~r~~L-~--~G---~VV~Ld~s~a~~  294 (345)
                      .  ....+...+.+ .  .+   .+|||+++.++.
T Consensus        83 ~--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  115 (176)
T d2bdta1          83 F--PDEAEALAQTVQAKVDDVEIRFIILWTNREEL  115 (176)
T ss_dssp             C--HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHH
T ss_pred             c--cHHHHHHHHHHHHhcCCCceEEEeccccHHHH
Confidence            1  11122222222 1  22   478999998765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.5e-10  Score=93.77  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=36.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      ++.|+|+|+|||||||+|+.||+.||+.+|++++++.+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~   40 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER   40 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHH
Confidence            4679999999999999999999999999999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.99  E-value=5.7e-10  Score=90.71  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+|+.|+|+|+|||||||||++||++|+..+++.|
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~   38 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV   38 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCch
Confidence            457899999999999999999999999986666554

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.5e-09  Score=90.19  Aligned_cols=92  Identities=21%  Similarity=0.439  Sum_probs=77.8

Q ss_pred             CCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-ccee
Q 019172           76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLV  154 (345)
Q Consensus        76 ~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~  154 (345)
                      ..+++|.|+|+..|++++|+++.....++++|.|++...++.|.+++..   ++|+ +.||..|.|.|+.|.++| ..+.
T Consensus         5 ~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~---~ll~-g~L~~~I~~des~W~ied~~~l~   80 (131)
T d1wfia_           5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQP---PVVD-GELYNEVKVEESSWLIEDGKVVT   80 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSC---CSBC-SCBSSCBCSTTCEEEEETTTEEE
T ss_pred             CCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCc---eeec-ccccCcccccccEEEEeCCCEEE
Confidence            4567999999999999999998877778999999999999999998864   3465 899999999999999976 4678


Q ss_pred             ehccccCCCCCcchhHh
Q 019172          155 INLKKQDPELKWPDIVE  171 (345)
Q Consensus       155 ~~~k~~~~~~~~~~~~~  171 (345)
                      +.|+|......|+.+..
T Consensus        81 i~L~K~~~~~~W~~l~~   97 (131)
T d1wfia_          81 VHLEKINKMEWWNRLVT   97 (131)
T ss_dssp             EEEEBSSSCCCCSCSBS
T ss_pred             EEEEECCCCccCHHHcC
Confidence            88988776666777643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.89  E-value=3.1e-09  Score=85.74  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHH-HhhCCceeeCcHHHHHHHcCchhh--hhhccChHHHHHHHHHHHHHHhcC---CCEEE
Q 019172          187 TSIFLVGDSTEVNEKVALELA-VGLGYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLSSH---VRAVV  260 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA-~~Lg~~fID~D~lIE~~~g~sI~e--i~~~~Gee~FRelE~~vL~~L~~~---~~~VI  260 (345)
                      +-|+|+|+|||||||+|+.|+ +..++.+++.|++.....+.....  .+....+...++.....++.+...   ...||
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            358899999999999999875 456899999999988776432221  111112223334444445454432   23566


Q ss_pred             EcCCCCCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172          261 ATLGGQQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       261 AtGGG~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~  294 (345)
                      ..+++     ..++.++.+    + .|   .+|||++|.++.
T Consensus        83 ~d~~~-----~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~  119 (152)
T d1ly1a_          83 ISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTEL  119 (152)
T ss_dssp             ECSCC-----CSHHHHHHHHHHHHHHTCEEEEEECCCCHHHH
T ss_pred             ccccc-----CCHHHHHHHHHhhhhhccchhhhhcCCCHHHH
Confidence            55554     333334322    2 23   578899887754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.2e-09  Score=91.60  Aligned_cols=86  Identities=15%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG  264 (345)
                      .+.-|+++|+|||||||+|+.|++.+|+.+|+.|++..                  +..+...+-..|..+.++||....
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~t~   74 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS------------------WQRCVSSCQAALRQGKRVVIDNTN   74 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS------------------HHHHHHHHHHHHHTTCCEEEESCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH------------------HHHHHHHHHHHHHCCCCceeeCcC
Confidence            56789999999999999999999999999999998632                  122233333345555667776544


Q ss_pred             CCCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172          265 GQQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG  294 (345)
Q Consensus       265 G~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~  294 (345)
                            .+...|..+    + .|   .+|||++|.++.
T Consensus        75 ------~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~  106 (172)
T d1yj5a2          75 ------PDVPSRARYIQCAKDAGVPCRCFNFCATIEQA  106 (172)
T ss_dssp             ------CSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred             ------CCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHH
Confidence                  333334332    3 24   488999988754

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.9e-09  Score=86.98  Aligned_cols=92  Identities=22%  Similarity=0.411  Sum_probs=75.4

Q ss_pred             CCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeeh
Q 019172           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (345)
Q Consensus        77 ~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~  156 (345)
                      .+++|.|+|+..||+++|+||. +..++++|.|++...++.+.+.+......+++ ++||..|.|.++.|.+++..+.+.
T Consensus        18 ~~~~Y~W~Qt~~~V~i~i~lp~-~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~-g~L~~~I~~deS~w~i~~~~~~i~   95 (124)
T d1wgva_          18 VRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVLV   95 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCT-TCCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEEE
T ss_pred             CCCCeEEEeECCEEEEEEEeCC-CCcchhhEEEEEEeCEEEEEEeccCCcceEEe-CcccCcccccccEEEEeCCCEEEE
Confidence            4569999999999999999996 33467899999999999999998887667776 999999999999999988875554


Q ss_pred             -ccccCCCCCcchhHh
Q 019172          157 -LKKQDPELKWPDIVE  171 (345)
Q Consensus       157 -~k~~~~~~~~~~~~~  171 (345)
                       +|+ ..+..|+.+.+
T Consensus        96 ~lkK-~~~~~W~~L~~  110 (124)
T d1wgva_          96 NLSK-VGEYWWNAILE  110 (124)
T ss_dssp             EECB-SSSCCCSCSBT
T ss_pred             EEEe-cCCCcChhhcc
Confidence             455 34456777643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.72  E-value=8e-09  Score=90.96  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh----CC--ceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcC
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL----GY--TPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSH  255 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L----g~--~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~  255 (345)
                      ...+++.|+|+|+|||||||+|+.|++.|    ++  .++|+|.+-+.. +.... +-.....+..+.+. .+...+...
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l-~~~l~-ys~~~r~~~~~r~~-~~a~~~~~~   96 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL-NKDLG-FSEADRNENIRRIA-EVAKLFADS   96 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT-TTTCC-SSHHHHHHHHHHHH-HHHHHHHHT
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhh-cCCCC-CChhHHHHHHHHHH-HHHHHHhcc
Confidence            44578899999999999999999999876    44  457888754322 11111 10111111122221 222333333


Q ss_pred             CC-EEEEcCCCCCcccCcHHHHHHHh-------c---CcEEEEEcChhhh
Q 019172          256 VR-AVVATLGGQQGAAARADKWQHLY-------A---GFTVWLSQTEAMG  294 (345)
Q Consensus       256 ~~-~VIAtGGG~~~avlr~~~r~~L~-------~---G~VV~Ld~s~a~~  294 (345)
                      .. +||++-+..  ...+..+|+.+.       .   -+.|||++|.++.
T Consensus        97 g~~viv~~i~~~--~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~  144 (208)
T d1m7ga_          97 NSIAITSFISPY--RKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVA  144 (208)
T ss_dssp             TCEEEEECCCCC--HHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHH
T ss_pred             CCceeeeccccc--HHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHH
Confidence            33 455555432  234555555442       1   2579999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=2.6e-08  Score=80.57  Aligned_cols=39  Identities=10%  Similarity=0.062  Sum_probs=35.0

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      +..+.++|+|+|++|+||||+|+.||+.+|+++++.|..
T Consensus         3 ~~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~   41 (192)
T d1lw7a2           3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR   41 (192)
T ss_dssp             GGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehH
Confidence            345678999999999999999999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.63  E-value=1.2e-08  Score=87.49  Aligned_cols=42  Identities=24%  Similarity=0.305  Sum_probs=37.2

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      |+...|.|.|++||||||+|+.||+.||++|+++.+++...+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            355678888999999999999999999999999999987643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.59  E-value=4.2e-07  Score=73.67  Aligned_cols=108  Identities=10%  Similarity=-0.016  Sum_probs=56.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCc-----eeeCcHHHHHHHc----Cchhhhhhcc---ChHHHHHHHHHHHHHHhc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYT-----PLSTKELLETFAK----QTIDSWMLAE---GSDSVVNGECDVLESLSS  254 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~-----fID~D~lIE~~~g----~sI~ei~~~~---Gee~FRelE~~vL~~L~~  254 (345)
                      +-|+|.|++||||||+++.||++|+..     .+..++.......    ....+.+...   ....+.....+.+.++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            568999999999999999999998644     3444555433321    1111111111   111122222334455555


Q ss_pred             CCCEEEEcCCCCC---cc--cCcHHHHHHHhcCcEEEEEcChhhh
Q 019172          255 HVRAVVATLGGQQ---GA--AARADKWQHLYAGFTVWLSQTEAMG  294 (345)
Q Consensus       255 ~~~~VIAtGGG~~---~a--vlr~~~r~~L~~G~VV~Ld~s~a~~  294 (345)
                      ...+++.+.+..+   +.  ..............+|||++++++.
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  126 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEI  126 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHH
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHH
Confidence            4444444332100   00  0112222233357899999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4.8e-08  Score=82.64  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      -|.|.||+||||+|+|+.||+.||+++|++.+++.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            5677799999999999999999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.46  E-value=2.8e-07  Score=80.07  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=39.2

Q ss_pred             HhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHH
Q 019172          170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELL  221 (345)
Q Consensus       170 ~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lI  221 (345)
                      .+.++.+.++....-.++.|+|.|+||+||||+|+.||..++..|+  ++|++.
T Consensus        16 ~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          16 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            3556666665444445678999999999999999999999976554  556654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=7.5e-07  Score=74.44  Aligned_cols=41  Identities=17%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC-----ceeeCcHHHHHHHcC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ  227 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~-----~fID~D~lIE~~~g~  227 (345)
                      .-|+++|.|||||||+|+.||+.|++     ..++.|.+.....+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~   48 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT   48 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccc
Confidence            45899999999999999999998874     457889887776654

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.8e-07  Score=68.48  Aligned_cols=86  Identities=16%  Similarity=0.336  Sum_probs=72.8

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k  158 (345)
                      .+|.|.|+..+|.+.|++++   ...+++.|++...++.+.+.......-+++ ..||..|.|.++.|.+.+..+.+.++
T Consensus         3 ~ry~W~Qt~~~V~i~i~~~~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~-~~L~~~I~p~~s~~~~~~~kiei~L~   78 (92)
T d1rl1a_           3 IKYDWYQTESQVVITLMIKN---VQKNDVNVEFSEKELSALVKLPSGEDYNLK-LELLHPIIPEQSTFKVLSTKIEIKLK   78 (92)
T ss_dssp             CCEEEEECSSEEEEEECCCS---CCGGGEEEECSSSCEEEEEECTTSSEEEEE-ECBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred             CceeEEeCCCEEEEEEEeCC---CChHheEEEEecCEEEEEEEcCCCcEEEEE-EEcCcccCchhcEEEEeCCEEEEEEE
Confidence            48999999999999999986   346799999999999998876665545565 78999999999999999999999999


Q ss_pred             ccCCCCCcchh
Q 019172          159 KQDPELKWPDI  169 (345)
Q Consensus       159 ~~~~~~~~~~~  169 (345)
                      |... ..||..
T Consensus        79 K~~~-~~W~~L   88 (92)
T d1rl1a_          79 KPEA-VRWEKL   88 (92)
T ss_dssp             CSSC-CCCSSS
T ss_pred             ECCC-CcCcCc
Confidence            9765 467764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.33  E-value=1e-06  Score=71.82  Aligned_cols=26  Identities=12%  Similarity=-0.069  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      -|+|.|++||||||+++.||+.|+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            35678999999999999999999654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=1.1e-06  Score=73.82  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~  224 (345)
                      ++-|-|+|.+||||||+|+.|. .+|++++++|.+..+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~   40 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARA   40 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHh
Confidence            4667799999999999999995 5899999999986553

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=2.2e-06  Score=74.07  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      -|.|+|.+||||||++++|+ .+|++++|+|++..+..
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   41 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVV   41 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHH
Confidence            46689999999999999996 78999999999877654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=1.1e-06  Score=75.73  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~  225 (345)
                      -|.|+|.+||||||++++|. .+|++++|+|++..+.+
T Consensus         4 iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            46689999999999999997 58999999999876543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.4e-05  Score=68.06  Aligned_cols=34  Identities=21%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCc----------eeeCcHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL  220 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~----------fID~D~l  220 (345)
                      --|-|.|.+||||||+++.|++.||..          .+.+|++
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            347789999999999999999999753          5788876

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.3e-05  Score=69.69  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---CCceee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID  216 (345)
                      +|+-|+|.|+.||||||+++.|++.|   |+.++-
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            46778889999999999999999987   565553

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=7.9e-06  Score=64.57  Aligned_cols=87  Identities=21%  Similarity=0.340  Sum_probs=72.2

Q ss_pred             cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCC-ccceeeeccccccccCCCceeeecccceeehc
Q 019172           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-FITLIETNQLFDKIKPTETIWYIDEDQLVINL  157 (345)
Q Consensus        79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~  157 (345)
                      +.|.|+|+..+|.++|++|+     .+++.|++...++.|++.+... ...+++ ..||..|.|.++.|.+.+..+.+.+
T Consensus         4 ~~~~W~Qt~~~V~i~I~v~~-----~~~~~v~i~~~~l~~~~~~~~~~~~y~l~-~~L~~~I~~~~s~~~v~~~kiei~L   77 (110)
T d1ejfa_           4 ASAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCCL   77 (110)
T ss_dssp             CCEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEEE
T ss_pred             CCcEEEECCCEEEEEEEeCC-----CCCceEEEEeceEEEEEEecCCCceEEEE-EEcccCcccCccEEEEeCCEEEEEE
Confidence            37999999999999999986     5788888888899998876544 333444 7899999999999999999999999


Q ss_pred             cccCCCCCcchhHh
Q 019172          158 KKQDPELKWPDIVE  171 (345)
Q Consensus       158 k~~~~~~~~~~~~~  171 (345)
                      +|..+..-||...+
T Consensus        78 ~K~~~~~~W~~L~~   91 (110)
T d1ejfa_          78 RKGESGQSWPRLTK   91 (110)
T ss_dssp             EESSTTCCCSSSBS
T ss_pred             EEcCCCCCCCceec
Confidence            88777777877644

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.6e-05  Score=65.46  Aligned_cols=26  Identities=12%  Similarity=0.041  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|+=|+|-|+.||||||+++.|++.|
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36679999999999999999999987

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=6e-06  Score=80.37  Aligned_cols=51  Identities=12%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             hHhhHHHHHH--hhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          169 IVESWESLTA--GSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       169 ~~~~~~~l~a--~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      +.+.|+++..  .....+.++||+|+||+|+|||.||+.||+.++.||+-.|.
T Consensus        30 v~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~da   82 (443)
T d1g41a_          30 LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   82 (443)
T ss_dssp             HHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             HHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeec
Confidence            3456776652  23345568899999999999999999999999999986654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.84  E-value=1.3e-05  Score=71.53  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      .++|+|.|++|+|||++|+.||..+|++|+..+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~   73 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS   73 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccccc
Confidence            3679999999999999999999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=1.1e-05  Score=72.35  Aligned_cols=34  Identities=15%  Similarity=0.107  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .++.|+|.|++|+|||++++.+|+.+|++++..|
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            3568999999999999999999999999998876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.73  E-value=8.6e-06  Score=70.49  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=31.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceee-CcHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS-TKELLETF  224 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID-~D~lIE~~  224 (345)
                      -|.|+|.+||||||+|++|++.+|++.+| +|.+-.+.
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            47899999999999999999999999999 56654443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=2.1e-05  Score=67.67  Aligned_cols=33  Identities=18%  Similarity=0.065  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+++|.|+||+||||+|+.||+.++++++...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~   67 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS   67 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCccccc
Confidence            457999999999999999999999999998644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.60  E-value=1.5e-05  Score=64.87  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      |+|+|+|++||||||+.+.++..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            579999999999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=2.1e-05  Score=72.15  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+.+|+|.||||+|||.+|+.||+.++.+|+..|
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~   81 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence            5689999999999999999999999998877665

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.6e-05  Score=70.30  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ++.|+|.|+||+|||++++.+|..+|++++..+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~   77 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEE
Confidence            578999999999999999999999999997755

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=2.3e-05  Score=67.62  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ..+++|.|+||+||||+|+.+|+.+++++...+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~   68 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSG   68 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEET
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccC
Confidence            4689999999999999999999999999888764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.3e-05  Score=62.66  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++|+|+|++|+||||+++.+++.|
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            689999999999999999999998

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=4.1e-05  Score=65.96  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ..+++|.|++|+||||+++.||+.+++.++..+
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~   84 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN   84 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhhccc
Confidence            457999999999999999999999999887554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=2.9e-05  Score=63.55  Aligned_cols=29  Identities=21%  Similarity=0.093  Sum_probs=24.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID  216 (345)
                      -|.|.|++||||||+|+.|++.|+...++
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~~   52 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccccc
Confidence            46699999999999999999988754333

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.7e-05  Score=60.40  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|.|+|++||||||+++.|++.|
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.6e-05  Score=66.97  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=32.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ..+.|+|.|++|+|||++++.+|..+|++|+..+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~   74 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG   74 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEH
Confidence            46789999999999999999999999999998873

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=9.3e-05  Score=65.94  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ++.|+|.|++|+|||++++.+|..++++++..+-
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~   71 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLING   71 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEEEc
Confidence            5789999999999999999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.13  E-value=0.00049  Score=59.74  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=75.2

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHc----Cc---------------hhhhhhccChHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAK----QT---------------IDSWMLAEGSDSVVN  243 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g----~s---------------I~ei~~~~Gee~FRe  243 (345)
                      .++|.|++|+|||.++++++..+.     ..|+++.++..+...    ..               ++++-.-.|.+...+
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~~  117 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQI  117 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHHH
Confidence            499999999999999999988763     457777776543221    01               222222224444444


Q ss_pred             HHHHHHHHHhcCCC-EEEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccccccceeeeeecc
Q 019172          244 GECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVSS  321 (345)
Q Consensus       244 lE~~vL~~L~~~~~-~VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i~~  321 (345)
                      .--.++..+..... +|+++....... ...++-+..|..|.++-|. +.+ +..-+...+....|.+.=--+-++|+..
T Consensus       118 ~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d-~~~~~iL~~~a~~rgl~l~~~v~~yl~~  195 (213)
T d1l8qa2         118 EFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDN-KTRFKIIKEKLKEFNLELRKEVIDYLLE  195 (213)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCH-HHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCc-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44455666555444 555555432111 1456667777789888886 322 2122222222334444333455666665


Q ss_pred             CCCC
Q 019172          322 FSRT  325 (345)
Q Consensus       322 ~~r~  325 (345)
                      ..|+
T Consensus       196 ~~~~  199 (213)
T d1l8qa2         196 NTKN  199 (213)
T ss_dssp             HCSS
T ss_pred             hcCc
Confidence            5554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00015  Score=60.34  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      |+-|+|+|++|||||||.+.|.+.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5779999999999999999999886

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00015  Score=61.38  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|+|+|++|+||+||++.|++.++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.02  E-value=0.00032  Score=59.43  Aligned_cols=26  Identities=12%  Similarity=-0.116  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ..+++|.|++|+||||+++.||+.+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999984

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0002  Score=65.86  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.3

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      +++++|++|+|||.+|+.||+.++.+|+-.|
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d   84 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD   84 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence            6888999999999999999999999987555

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.96  E-value=0.00039  Score=65.54  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=30.7

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ....+|+++||+|+|||-+||.||+.++.+|+-.|
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D  100 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  100 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcccceeehh
Confidence            35788999999999999999999999998876444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.96  E-value=0.00037  Score=65.71  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      ...+++.++|.||||+|||++|+.||..+|.+|+..+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            3446678999999999999999999999999999863

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00026  Score=59.47  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +.|+|+|++||||+||++.|++.+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            4599999999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00099  Score=61.68  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI  221 (345)
                      .-|-|.|.+||||||+|+.|+..|+       ...|.+|+++
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            3577899999999999999999985       3458999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00016  Score=61.85  Aligned_cols=28  Identities=21%  Similarity=0.110  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      +..+++|.|++|+||||+++.+|+.++.
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3467999999999999999999998753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.83  E-value=0.00022  Score=59.17  Aligned_cols=31  Identities=6%  Similarity=-0.040  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI  215 (345)
                      +++-|+|-|..||||||+++.|++.|+-..+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            5678999999999999999999999975443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.81  E-value=0.00032  Score=57.21  Aligned_cols=23  Identities=9%  Similarity=-0.039  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      |.|+|++||||||+...|+..|.
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            45999999999999999987654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00098  Score=57.17  Aligned_cols=48  Identities=13%  Similarity=0.044  Sum_probs=35.6

Q ss_pred             chhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          167 PDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       167 ~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      |-..+.|+.+.......--+..++|.|++|+||||+|+.+|+.|-..-
T Consensus         5 Pw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~   52 (207)
T d1a5ta2           5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (207)
T ss_dssp             GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccc
Confidence            433456777776544444456699999999999999999999985443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.00059  Score=56.82  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCcee
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~fI  215 (345)
                      +-|+|.|..||||||+++.|++.|   |++++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~   32 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            358999999999999999999987   55443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0002  Score=61.19  Aligned_cols=28  Identities=14%  Similarity=-0.039  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f  214 (345)
                      .+++|.|++|+||||+|+.+|+.++...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~~   64 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGRS   64 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhccc
Confidence            4699999999999999999999988653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00054  Score=58.50  Aligned_cols=27  Identities=11%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ...+++|.|++|+||||+++.+|+.+.
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            345799999999999999999999873

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.65  E-value=0.0007  Score=57.15  Aligned_cols=34  Identities=6%  Similarity=-0.025  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D  218 (345)
                      .+..|+|.|++|+|||++.+.+++.++..+...|
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~   61 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLD   61 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEE
Confidence            4578999999999999999999999997765443

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00033  Score=59.31  Aligned_cols=32  Identities=9%  Similarity=-0.130  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~  217 (345)
                      .+-|+|-|+.||||||+++.||+.|.-..+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~~   33 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   33 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCCCee
Confidence            57799999999999999999999996544443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.00099  Score=56.41  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=26.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .+..|+|.|..||||||+.|.+++.||..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34568899999999999999999999975

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0036  Score=54.44  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=41.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS  254 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~  254 (345)
                      ...|++|+|.+|.|||+|.+.||+++          +..++.+|-- .-.+|++.        ...|.+.-..+++++..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~-~LiAg~~~--------rG~~E~rl~~il~e~~~  112 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG-ALVAGAKY--------RGEFEERLKGVLNDLAK  112 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH-HHHTTTCS--------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH-HHhccCCc--------cHHHHHHHHHHHHHHhc
Confidence            46799999999999999999999866          3556666531 00123221        12344444566777654


Q ss_pred             C-CCEE
Q 019172          255 H-VRAV  259 (345)
Q Consensus       255 ~-~~~V  259 (345)
                      . .++|
T Consensus       113 ~~~~iI  118 (195)
T d1jbka_         113 QEGNVI  118 (195)
T ss_dssp             STTTEE
T ss_pred             CCCcEE
Confidence            4 3544

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=55.34  Aligned_cols=24  Identities=13%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +.|+|+||+|+||+||.+.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            569999999999999999998775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0015  Score=56.19  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=26.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +|+-|+|-|+.||||||+++.|++.|.-.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            57889999999999999999999999643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.00093  Score=56.42  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+++|.|++|+||||+++.+|+.+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            469999999999999999999986

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0015  Score=55.63  Aligned_cols=30  Identities=7%  Similarity=-0.082  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI  215 (345)
                      ++-|+|-|..||||||+++.|++.|+-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            567999999999999999999999986554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.0045  Score=54.24  Aligned_cols=36  Identities=14%  Similarity=0.021  Sum_probs=27.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      ++..|+|+|+.|+||||....||.++-     ..++-+|.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            356788999999999998777776553     456788876

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0016  Score=56.12  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|+-|+|+||+|+||+||.+.|.+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0037  Score=56.65  Aligned_cols=66  Identities=18%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcHHHHHHHcCchhhhhhc-cChHHHHHHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKELLETFAKQTIDSWMLA-EGSDSVVNGECDVLESLS  253 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~lIE~~~g~sI~ei~~~-~Gee~FRelE~~vL~~L~  253 (345)
                      ...|++|+|++|+|||+|.+.||+++          +..++.+|-          ..+++. .....|.+.-..++.++.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~----------~~liag~~~~g~~e~r~~~i~~~~~  107 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI----------GSLLAGTKYRGDFEKRFKALLKQLE  107 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC----------C---CCCCCSSCHHHHHHHHHHHHS
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee----------chHhccCccchhHHHHHHHHHHHhh
Confidence            45789999999999999999999874          334444442          122221 112235555566777777


Q ss_pred             cCCCEEE
Q 019172          254 SHVRAVV  260 (345)
Q Consensus       254 ~~~~~VI  260 (345)
                      ...++|+
T Consensus       108 ~~~~iIl  114 (268)
T d1r6bx2         108 QDTNSIL  114 (268)
T ss_dssp             SSSCEEE
T ss_pred             ccCCceE
Confidence            7666655

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0013  Score=55.63  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+++|.|++|+||||+++.+|+.++.
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhhc
Confidence            36899999999999999999998753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.08  E-value=0.00093  Score=56.78  Aligned_cols=23  Identities=9%  Similarity=-0.133  Sum_probs=20.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++|.|++|+|||++++.+++.|+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            45579999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.93  E-value=0.0017  Score=60.45  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             CceEEE-EcCCCCChHHHHHHHHHhhC--Ccee--eCcHHHH
Q 019172          186 GTSIFL-VGDSTEVNEKVALELAVGLG--YTPL--STKELLE  222 (345)
Q Consensus       186 ~~~IvL-IG~~GSGKSTVAk~LA~~Lg--~~fI--D~D~lIE  222 (345)
                      +++++| +|+||+|||.+|+.||..+|  .+|+  +..+++.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS  163 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh
Confidence            455555 79999999999999999987  5555  4445443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.87  E-value=0.014  Score=50.71  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      ..|+|+|+.|+||||....||..+.     ..++.+|.+
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            3467799999999998888887653     457888876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.85  E-value=0.0026  Score=54.51  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      ..++.|+|+|.+|+||||++-.|.++ |+.+|.=|...
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~   48 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVD   48 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEE
Confidence            46888999999999999999999986 99998777653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.85  E-value=0.0052  Score=53.76  Aligned_cols=36  Identities=19%  Similarity=0.019  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      .+..|+|+|++|+||||....||..+.     ..+|-+|.+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            356688899999999998877877663     567888876

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0019  Score=59.27  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~  217 (345)
                      +++++|++|+|||.+|+.||+.|   +.+++..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~   87 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   87 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEE
Confidence            67788999999999999999998   5555444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.69  E-value=0.0031  Score=52.92  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      -|+|+|+.||||||+-+.|.+.++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            478999999999999999987653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0022  Score=57.18  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..|.|+|.+||||||+.+.|+..+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            578899999999999999999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.67  E-value=0.002  Score=59.27  Aligned_cols=35  Identities=11%  Similarity=0.064  Sum_probs=27.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhC---C--ceeeCcHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL  221 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg---~--~fID~D~lI  221 (345)
                      .-|-|.|.+||||||+++.|++.|+   .  .+|++|+++
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            3588999999999999999998774   3  489999985

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.65  E-value=0.0026  Score=57.00  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|.|+|++||||||+.+.|+..+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            578899999999999999999986654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.016  Score=50.69  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=28.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +..|+|+|+.|+||||....||..+.     ..++.+|.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            45688899999999998888886653     557888887

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.63  E-value=0.0038  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.62  E-value=0.0016  Score=58.93  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+|+|+|++|+||||+||.+|..|
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhC
Confidence            34689999999999999999999987

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.60  E-value=0.0033  Score=53.92  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l  220 (345)
                      ..++.++|.|++|+||||++-.|.++ |+.+|.=|..
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v   48 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI   48 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence            36888999999999999999999876 9998877765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.60  E-value=0.0028  Score=56.29  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.++-.+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCCC
Confidence            477899999999999999999987654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0033  Score=57.57  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhh--------CCceeeCcHH
Q 019172          188 SIFLVGDSTEVNEKVALELAVGL--------GYTPLSTKEL  220 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~L--------g~~fID~D~l  220 (345)
                      -|-|.|..||||||++..|.+.|        ...++.+|++
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            45679999999999999887665        3566899998

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.54  E-value=0.0036  Score=55.96  Aligned_cols=27  Identities=19%  Similarity=0.046  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+.|+|++||||||+.+.++-.+.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            467799999999999999999986653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0027  Score=56.78  Aligned_cols=27  Identities=26%  Similarity=0.139  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.|+..+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            578899999999999999999987664

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.49  E-value=0.0053  Score=52.12  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI  221 (345)
                      ..++.++|.|.+|+||||++-.|.++ |+.+|.=|..+
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            46888999999999999999999888 99988777653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0043  Score=55.19  Aligned_cols=27  Identities=19%  Similarity=0.068  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.++-.+.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            467899999999999999999986653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0069  Score=52.20  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      +..++|.|++|+||||+|+.+++.++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            4568999999999999999999999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.36  E-value=0.019  Score=49.88  Aligned_cols=36  Identities=14%  Similarity=0.096  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l  220 (345)
                      +++.|.|+|+.|+||||....||..+.     ..+|-+|.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            457789999999999998777777654     456777775

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.35  E-value=0.0033  Score=55.93  Aligned_cols=27  Identities=15%  Similarity=-0.010  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++..+.|+|++||||||+.+.|+..+.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            578899999999999999999987663

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.32  E-value=0.0037  Score=53.77  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|..+.|+|++||||||+.+.++..+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            47789999999999999999998655

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0058  Score=48.46  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=24.9

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ....+..+.|.|++|+|||+++-.+|...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35568899999999999999999998653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.21  E-value=0.0053  Score=54.81  Aligned_cols=27  Identities=19%  Similarity=0.038  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++..+.|+|++||||||+.+.++-.+.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            467799999999999999999987664

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0045  Score=55.29  Aligned_cols=27  Identities=11%  Similarity=-0.004  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.++-.+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            467799999999999999999986653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0057  Score=55.42  Aligned_cols=28  Identities=14%  Similarity=0.184  Sum_probs=24.4

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+|..+.|+|++||||||+.+.|+..+.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            3678899999999999999999986653

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=95.08  E-value=0.16  Score=41.02  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC--C
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG--G  265 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG--G  265 (345)
                      -|+|-|+.-|=|||+|..|++.|.||.|-+..+--...|  ...+|             +-..+|....+++|.---  .
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelaksg--neklf-------------ehfnkladednviidrfvysn   66 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--NEKLF-------------EHFNKLADEDNVIIDRFVYSN   66 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHHC--HHHHH-------------HHHHHHTTCCSEEEESCHHHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhcc--CHHHH-------------HHHHhhccccceeeehhhhhh
Confidence            488999999999999999999999999998875333332  11111             223456666677765210  0


Q ss_pred             ------CCc-ccCcHHHHHHHh-----cCcEEEEEcChhhhchhhhhhhc
Q 019172          266 ------QQG-AAARADKWQHLY-----AGFTVWLSQTEAMGKLLRVFVLS  303 (345)
Q Consensus       266 ------~~~-avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~Rv~v~~  303 (345)
                            +.+ ..+++.....+.     ...||||++++..+ ..|.+++.
T Consensus        67 lvyakkfkdysilterqlrfiedkikakakvvylhadpsvi-kkrlrvrg  115 (164)
T d2axpa1          67 LVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVI-KKRLRVRG  115 (164)
T ss_dssp             HHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHH-HHHHHHHT
T ss_pred             hHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHH-HHHhcccc
Confidence                  000 135555444442     36799999999876 55555544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.03  E-value=0.0054  Score=55.09  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            47789999999999999999997544

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.00  E-value=0.0045  Score=54.95  Aligned_cols=27  Identities=11%  Similarity=-0.037  Sum_probs=23.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++..+.|+|++||||||+.+.|+-.+.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            467799999999999999999987764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.90  E-value=0.0083  Score=54.45  Aligned_cols=97  Identities=11%  Similarity=0.028  Sum_probs=57.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC-----------ceeeCcHHHHHHHcCchh-------------hhhhccChHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY-----------TPLSTKELLETFAKQTID-------------SWMLAEGSDSVV  242 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~-----------~fID~D~lIE~~~g~sI~-------------ei~~~~Gee~FR  242 (345)
                      +||.|+|..|+||||+...|....|.           ...|.+. .|+..|++|.             .+++..|-..|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~-~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFME-QERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccH-HHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            68999999999999999999766663           2334333 3444466644             256777766664


Q ss_pred             HHHHHHHHHHhcCCC--EEEEcCCCCCcccCcHHHHHHHh-c--CcEEEEEc
Q 019172          243 NGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLY-A--GFTVWLSQ  289 (345)
Q Consensus       243 elE~~vL~~L~~~~~--~VIAtGGG~~~avlr~~~r~~L~-~--G~VV~Ld~  289 (345)
                      ..-...|.   .-+.  +||+...|+  .+.++..|+..+ .  -+++|+..
T Consensus        86 ~e~~~~l~---~~D~avlVvda~~Gv--~~~T~~~w~~a~~~~lP~i~fINK  132 (276)
T d2bv3a2          86 IEVERSMR---VLDGAIVVFDSSQGV--EPQSETVWRQAEKYKVPRIAFANK  132 (276)
T ss_dssp             TTHHHHHH---HCCEEEEEEETTTSS--CHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHH---hhhheEEeccccCCc--chhHHHHHHHHHHcCCCEEEEEec
Confidence            42222222   2233  455666676  367778888776 3  35788765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.83  E-value=0.0065  Score=54.33  Aligned_cols=24  Identities=13%  Similarity=-0.044  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      -+.|+|++||||||+.+.++-.+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            467899999999999999997763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.83  E-value=0.028  Score=47.85  Aligned_cols=98  Identities=12%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC--------ceeeCcHHH-HHHHcCchh-------------hhhhccChHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY--------TPLSTKELL-ETFAKQTID-------------SWMLAEGSDSVVNG  244 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~--------~fID~D~lI-E~~~g~sI~-------------ei~~~~Gee~FRel  244 (345)
                      -||.++|..++|||||...|-..+|.        ....+|..- |+.-|.+++             .+++..|-..|-. 
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~-   82 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK-   82 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH-
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH-
Confidence            47999999999999999998654431        112223333 334466643             2466777555543 


Q ss_pred             HHHHHHHHhcCCC--EEEEcCCCCCcccCcHHHHHHHh-cC---cEEEEEc
Q 019172          245 ECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLY-AG---FTVWLSQ  289 (345)
Q Consensus       245 E~~vL~~L~~~~~--~VIAtGGG~~~avlr~~~r~~L~-~G---~VV~Ld~  289 (345)
                        +++..+...+.  .||+.-.|+  ..-+.+.|.++. .|   .+|+|..
T Consensus        83 --~~~~~~~~aD~avlVvda~~Gv--~~qt~~~~~~~~~~gi~~iiv~iNK  129 (204)
T d2c78a3          83 --NMITGAAQMDGAILVVSAADGP--MPQTREHILLARQVGVPYIVVFMNK  129 (204)
T ss_dssp             --HHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             --HHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHHcCCCeEEEEEEe
Confidence              44555554444  345555563  133345555554 34   3566664

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.83  E-value=0.035  Score=49.81  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC-----------ceeeCcHHHHHHHcCchh-------------hhhhccChHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY-----------TPLSTKELLETFAKQTID-------------SWMLAEGSDSVV  242 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~-----------~fID~D~lIE~~~g~sI~-------------ei~~~~Gee~FR  242 (345)
                      +||.|+|..|+||||+...|...-|.           .+.|.+. -|+..|+++.             .+++..|-..|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~-~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchH-HHHHhCCeEEeecccccccccceeEEccCchhhhh
Confidence            58999999999999999999655443           3344433 3445566644             357888877775


Q ss_pred             HHHHHHHHHHhcCCC--EEEEcCCCCCcccCcHHHHHHHh-c--CcEEEEEc
Q 019172          243 NGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLY-A--GFTVWLSQ  289 (345)
Q Consensus       243 elE~~vL~~L~~~~~--~VIAtGGG~~~avlr~~~r~~L~-~--G~VV~Ld~  289 (345)
                      ..-...+   ..-+.  .||+.-.|+  .+-++..|+.++ .  .++|++..
T Consensus        82 ~e~~~al---~~~D~avlvvda~~Gv--~~~t~~~~~~~~~~~~p~~i~iNk  128 (267)
T d2dy1a2          82 GEIRGAL---EAADAALVAVSAEAGV--QVGTERAWTVAERLGLPRMVVVTK  128 (267)
T ss_dssp             HHHHHHH---HHCSEEEEEEETTTCS--CHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhhhhh---cccCceEEEeeccCCc--cchhHHHHHhhhhccccccccccc
Confidence            5333333   22233  344555565  356777777775 3  35777665

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.80  E-value=0.0072  Score=47.88  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +..+|+|+|.+|+||||+-..|.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34679999999999999998874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.77  E-value=0.0045  Score=55.45  Aligned_cols=26  Identities=15%  Similarity=0.003  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +|..+.|+|++||||||+.+.++-.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            46789999999999999999998765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.70  E-value=0.0044  Score=55.62  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      ++..+.|+|++||||||+.+.|+..+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            578899999999999999999876654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.67  E-value=0.0091  Score=47.55  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            45799999999999999998854

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.62  E-value=0.0098  Score=47.42  Aligned_cols=24  Identities=8%  Similarity=0.282  Sum_probs=20.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +..+|+|+|.+|+||||+...|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.52  E-value=0.0088  Score=52.97  Aligned_cols=27  Identities=15%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.++-.+.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            477899999999999999999986653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.51  E-value=0.012  Score=45.81  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..+|+|+|.+|+||||+-..+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999987653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.012  Score=45.31  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|+|+|.+|+||||+...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988763

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.013  Score=47.89  Aligned_cols=32  Identities=13%  Similarity=0.120  Sum_probs=25.9

Q ss_pred             ceEEEEcCC-CCChHHHHHHHHHhh---C--CceeeCc
Q 019172          187 TSIFLVGDS-TEVNEKVALELAVGL---G--YTPLSTK  218 (345)
Q Consensus       187 ~~IvLIG~~-GSGKSTVAk~LA~~L---g--~~fID~D  218 (345)
                      ++|+|+|-. |+||||++-.||..|   |  .-++|.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            689999996 999999999999888   3  3456654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.011  Score=48.83  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ....+..+.|.|++|+||||++-.+|..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3667889999999999999999988754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.22  E-value=0.011  Score=52.59  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|..+.|+|++||||||+.+.|+-.+.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            477899999999999999999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.0097  Score=52.19  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .|..+.|+|++||||||+.+.|+-.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5788999999999999999999863

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.15  E-value=0.013  Score=52.01  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...|.|+||.|.||||+|+.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999998765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.014  Score=46.74  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+||||+...+...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            4568999999999999999988653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.017  Score=47.84  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ++|+|+|.+|+||||+-..|..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999888865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.014  Score=46.88  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHH
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      |+..+|+|+|.+|+||||+...|..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            4456799999999999999998865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.64  E-value=0.017  Score=51.10  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .|..+-|+|++||||||+.+.|+-.+.
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            467788999999999999999987765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.59  E-value=0.02  Score=45.88  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +..+|+|+|.+|+||||+-..|.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999998773

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.022  Score=45.47  Aligned_cols=21  Identities=10%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.54  E-value=0.024  Score=47.59  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE  219 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~  219 (345)
                      ..++..++|.|++|+|||+++..+|...     ..-|+++++
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            4467889999999999999999998886     255776654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.51  E-value=0.017  Score=54.62  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...|++|||.+|+|||+|...||+++
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999863

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.47  E-value=0.024  Score=47.37  Aligned_cols=29  Identities=17%  Similarity=0.107  Sum_probs=24.8

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ....+..++|.|++|+||||+|-.+|...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35667889999999999999999888654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.42  E-value=0.018  Score=52.87  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+++|+++|..||||||+.+.|...+.
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcc
Confidence            367899999999999999999987764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.023  Score=47.22  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=23.7

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHH
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ....+..+.|.|++|+|||++|..+|.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            355678899999999999999999985

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.027  Score=45.68  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D  218 (345)
                      +|-.|++.|.+|+||||||++|...|.       +..+|.|
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            577899999999999999999977662       3456666

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.024  Score=45.70  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3699999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.35  E-value=0.025  Score=45.50  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|+++|.+|+||||+-..|...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5999999999999999988754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.023  Score=44.70  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      |.+|+|+|.+|+||||+-..|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999998863

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.27  E-value=0.026  Score=44.76  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.15  E-value=0.024  Score=46.42  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ..|.|+|.+|+||||+-..|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            369999999999999999986

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.026  Score=45.19  Aligned_cols=25  Identities=8%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +..+|+|+|.+|+|||++...+...
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4457999999999999999988653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.06  E-value=0.022  Score=52.86  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..|+|=|.-|+||||+++.|++.++.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.05  E-value=0.026  Score=45.17  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .|.|+|.+|+||||+-..|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.029  Score=44.87  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.03  E-value=0.027  Score=45.08  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .|.|+|.+|+||||+.+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998853

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.02  E-value=0.03  Score=44.67  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+||||+...|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999988653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.03  Score=44.94  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+-+.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999999875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.08  Score=45.16  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+...+|.|.+|+||||++-.||..+
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4557788899999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.029  Score=45.55  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      -+|+|+|.+|+||||+...|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3599999999999999998763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.84  E-value=0.027  Score=49.71  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=24.0

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..++++..+|+|.+|+||||+-..|...
T Consensus        91 ~~l~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          91 EYLKGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HHhcCCeEEEECCCCCCHHHHHHhhcch
Confidence            4678899999999999999999987433

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.82  E-value=0.023  Score=45.81  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ..+|+|+|.+|+||||+-..+.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4679999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.81  E-value=0.036  Score=45.34  Aligned_cols=28  Identities=14%  Similarity=0.070  Sum_probs=24.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ...+..+.|.|.+|+|||+++-.+|..+
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999754

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.11  Score=42.04  Aligned_cols=91  Identities=12%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CCCcceEEeecc-cceeeeeeecCcccccccceeEecCCceEEEEeeccC-----------CccceeeeccccccccCCC
Q 019172           76 ANTSQYEFSDGS-AEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG-----------SFITLIETNQLFDKIKPTE  143 (345)
Q Consensus        76 ~~~~~y~~~~~~-~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~-----------~~~tlIe~k~l~~~i~p~E  143 (345)
                      .+.-+|.|-|.. ..|-+.|.+++  + ...++.|++.+.+|.+.+....           ......-+-.||..|.|.+
T Consensus        17 ~~~ir~dwyq~~~~~V~VtI~~K~--v-~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~   93 (134)
T d1wh0a_          17 LAFVKNDSYEKGPDSVVVHVYVKE--I-CRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQ   93 (134)
T ss_dssp             ESCCCEEEEEETTTEEEEEEECCS--B-CTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEE
T ss_pred             ccccccceeecCCCEEEEEEEeCC--C-chhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhH
Confidence            344477777775 67888888887  3 3579999999999888774221           1112233468999999999


Q ss_pred             ceeeecccceeehccccCCCCCcchhH
Q 019172          144 TIWYIDEDQLVINLKKQDPELKWPDIV  170 (345)
Q Consensus       144 tiw~~Dd~~~~~~~k~~~~~~~~~~~~  170 (345)
                      +.|.+-...+.|.|+|.+. ..|+.+.
T Consensus        94 S~~~v~~~kiei~L~K~~~-~~W~~Le  119 (134)
T d1wh0a_          94 CTFCFTASRIDICLRKRQS-QRWGGLE  119 (134)
T ss_dssp             EEEEECSSEEEEEEEESSS-CCCSCSB
T ss_pred             cEEEeCCCEEEEEEEeCCC-CcCcCcc
Confidence            9999999999999998775 4577763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.035  Score=44.32  Aligned_cols=21  Identities=10%  Similarity=0.148  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+|||++...+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999998865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.69  E-value=0.021  Score=52.87  Aligned_cols=28  Identities=21%  Similarity=0.103  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      ...|+|-|.-|+||||+++.|++.|+..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3569999999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.033  Score=44.92  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ++|+|+|.+|+|||++...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            56899999999999999888754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.62  E-value=0.032  Score=45.18  Aligned_cols=19  Identities=16%  Similarity=0.314  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCChHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALEL  206 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~L  206 (345)
                      +|+|+|.+|+||||+-.++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999988

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.61  E-value=0.024  Score=45.85  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALEL  206 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~L  206 (345)
                      +..+|+|+|.+|+||||+-..+
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            4568999999999999999876

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.57  E-value=0.037  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|+++|.+|+||||+...+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.038  Score=43.81  Aligned_cols=21  Identities=5%  Similarity=0.219  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.028  Score=44.87  Aligned_cols=23  Identities=9%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+||||+...|..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.038  Score=44.23  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+++|.+|+||||+...|...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.038  Score=44.31  Aligned_cols=22  Identities=5%  Similarity=0.140  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.038  Score=44.55  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.44  E-value=0.035  Score=44.40  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.39  E-value=0.035  Score=45.22  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ..|+|+|.+|+||||+-..|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999998754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.04  Score=44.16  Aligned_cols=22  Identities=9%  Similarity=0.214  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+|||||-..+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.031  Score=44.66  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.042  Score=44.30  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|.+|+|||+|...+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.042  Score=43.81  Aligned_cols=22  Identities=9%  Similarity=0.135  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+-..+..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999987754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.042  Score=44.08  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            689999999999999988753

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.071  Score=45.71  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh---CC--ceeeCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTK  218 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~--~fID~D  218 (345)
                      ++-|++.|=-|.||||++-.||..|   |.  -.||+|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            5678889999999999888888877   44  357888

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.047  Score=43.83  Aligned_cols=21  Identities=14%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999988865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.95  E-value=0.051  Score=44.28  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ...+..+.|.|.+|+|||+++..+|
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            5568899999999999999997654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.92  E-value=0.048  Score=44.18  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.91  E-value=0.049  Score=46.85  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=23.8

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|.-++|.|.+|+||||++..+|..
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            4556888999999999999999888753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.025  Score=44.81  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=19.6

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ..-.|.|+|.+++|||||-..|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            34679999999999999998773

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.01  Score=46.59  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=19.7

Q ss_pred             EEEcCCCCChHHHHHHHHHhhC
Q 019172          190 FLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       190 vLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +|+|+.||||||+-.+|.-.|+
T Consensus        28 vi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999988774

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.84  E-value=0.026  Score=52.37  Aligned_cols=26  Identities=8%  Similarity=-0.037  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      ..|+|-|.-|+||||+++.|++.++.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            45999999999999999999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.81  E-value=0.064  Score=46.92  Aligned_cols=23  Identities=9%  Similarity=0.182  Sum_probs=20.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      ...+|+|+|.+|+||||++..|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Confidence            45689999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.076  Score=48.72  Aligned_cols=26  Identities=8%  Similarity=0.017  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +...|-|+|+||+||||+-..|+..+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            35568899999999999999998654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.053  Score=43.45  Aligned_cols=23  Identities=4%  Similarity=0.133  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      -+|+|+|.+|+|||++-..+...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999988753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.055  Score=43.91  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      -+|+|+|.+|+|||++-..+...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999888653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.055  Score=43.24  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+|||++.+.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.05  Score=46.73  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCc
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D  218 (345)
                      ..+-|++.|=-|+||||++-.||..|   |  .-.||+|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            34556678999999999877777666   3  3467888

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.055  Score=43.65  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=19.3

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+|||++...+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.053  Score=43.27  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      -+|+|+|.+|+|||++...+...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999987543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.37  E-value=0.028  Score=49.87  Aligned_cols=29  Identities=7%  Similarity=0.113  Sum_probs=24.3

Q ss_pred             hhhhcCCceEEEEcCCCCChHHHHHHHHH
Q 019172          180 SMQLLKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       180 ~~~~l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ....++++..+|+|.+|+||||+-..|..
T Consensus        91 L~~~l~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          91 IIPHFQDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HHHhhccceEEEECCCCccHHHHHHhhcc
Confidence            34567888899999999999999998853

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.26  E-value=0.056  Score=43.54  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .|.|+|.+|+||||+...|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999988643

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.25  E-value=0.064  Score=43.06  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.21  E-value=0.093  Score=47.96  Aligned_cols=26  Identities=12%  Similarity=0.006  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +...|-|+|+||+||||+-..|.+.+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999988754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.063  Score=43.80  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|+|+|.+|+|||++-..+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            6999999999999999988653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.065  Score=43.20  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      -+|+|+|.+|+||||+-..|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.14  E-value=0.062  Score=43.77  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|.+|+|||++.+.+...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999888663

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.02  E-value=0.055  Score=43.17  Aligned_cols=21  Identities=10%  Similarity=0.327  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCChHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      .+|+|+|..|+|||++-+++-
T Consensus         3 ~KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999998874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.00  E-value=0.07  Score=42.88  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.97  E-value=0.11  Score=48.42  Aligned_cols=102  Identities=14%  Similarity=0.022  Sum_probs=54.1

Q ss_pred             eEEEEcCCCCChHHHHHHHHHhhCC---ceeeCcHHHHHHH-cCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172          188 SIFLVGDSTEVNEKVALELAVGLGY---TPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~Lg~---~fID~D~lIE~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG  263 (345)
                      -|+|+|+.||||||....+-+.+.-   .++-.-+=+|-.. |..--++....|.. |.    ++++.+..++.=||..|
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~-~~----~~l~~~lR~dPDvi~ig  234 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMT-FA----RGLRAILRQDPDVVMVG  234 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBC-HH----HHHHHHGGGCCSEEEES
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCC-HH----HHHHHHHhhcCCEEEec
Confidence            4778999999999999888877743   2333333233221 11111112223332 33    34555555555466556


Q ss_pred             CCCCcccCcHHHHHHHh---cCcEEE--EEcChhhhchhh
Q 019172          264 GGQQGAAARADKWQHLY---AGFTVW--LSQTEAMGKLLR  298 (345)
Q Consensus       264 GG~~~avlr~~~r~~L~---~G~VV~--Ld~s~a~~~~~R  298 (345)
                      =-    -..+.....+.   .|+.||  |++..+.....|
T Consensus       235 Ei----Rd~~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~R  270 (401)
T d1p9ra_         235 EI----RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTR  270 (401)
T ss_dssp             CC----CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHH
T ss_pred             Cc----CChHHHHHHHHHHhcCCeEEEEeccCchHhhhhh
Confidence            41    22233444454   589898  455555444444

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.93  E-value=0.064  Score=43.09  Aligned_cols=23  Identities=9%  Similarity=0.089  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .-+|.|+|.+|+||||+-..|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35799999999999999988864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.056  Score=46.40  Aligned_cols=22  Identities=9%  Similarity=-0.034  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhh
Q 019172          189 IFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      ++|.|+-||||||+-+.|.+..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            6789999999999998887753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.066  Score=42.50  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .|.|+|.+|+||||+-.+|-.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999964

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.78  E-value=0.073  Score=43.72  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+...+..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            4599999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.68  E-value=0.16  Score=44.30  Aligned_cols=34  Identities=6%  Similarity=0.032  Sum_probs=28.1

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI  215 (345)
                      ...+...|+|.|++++|||+++..|.+.|+-..+
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi   82 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   82 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence            3445678999999999999999999999974443

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.66  E-value=0.1  Score=52.38  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=41.3

Q ss_pred             ccCCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          139 IKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       139 i~p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      +.|+..+-.++++.+.. ++........|-+....+..-..+....+..+|+|.|-+|||||+-+|.+=+.|
T Consensus        40 vNP~~~l~~y~~~~~~~-y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          40 TNPFKNLNIYKESDIKA-YNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             ECCSSCCSCCSHHHHHH-HSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCHHHHHH-HcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            33544444466655443 322222223355544333222223445578899999999999999999886655

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.64  E-value=0.073  Score=46.33  Aligned_cols=19  Identities=5%  Similarity=0.169  Sum_probs=15.7

Q ss_pred             CceEEEEcCCCCChHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVAL  204 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk  204 (345)
                      ..+++|.|.+||||||++-
T Consensus        24 ~g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHH
Confidence            4568899999999998763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.62  E-value=0.025  Score=44.39  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCChHHHHHHHHHh
Q 019172          188 SIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      +|.|+|.+|+||||+-..|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.61  E-value=0.15  Score=44.44  Aligned_cols=27  Identities=19%  Similarity=0.116  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      .+..|+|.|.+|+||+++|+.+.+...
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            467899999999999999999987643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.55  E-value=0.05  Score=45.04  Aligned_cols=23  Identities=13%  Similarity=0.190  Sum_probs=19.4

Q ss_pred             hcCCceEEEEcCCCCChHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALE  205 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~  205 (345)
                      .+.+++++|.++.|+|||+++..
T Consensus        37 l~~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          37 VFSGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HTTCSCEEEECSSHHHHHHHHHH
T ss_pred             HHcCCCEEEEcCCCCchhHHHHH
Confidence            44578999999999999998754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.51  E-value=0.1  Score=42.41  Aligned_cols=26  Identities=19%  Similarity=0.088  Sum_probs=21.2

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHH
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+.+.+.+|+++.|+|||.++-.++.
T Consensus        20 ~~~~~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          20 KCKETNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             HGGGSCEEEECCTTSCHHHHHHHHHH
T ss_pred             HHhcCCeEEEeCCCCcHHHHHHHHHH
Confidence            33466788999999999998887775

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.49  E-value=0.045  Score=44.06  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=9.4

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      +|+|+|.+|+||||+...|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.47  E-value=0.07  Score=45.18  Aligned_cols=23  Identities=9%  Similarity=0.316  Sum_probs=20.1

Q ss_pred             CceEEEEcCCCCChHHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      ..+|+|+|..|+||||+-+.+..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999998853

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.077  Score=42.41  Aligned_cols=23  Identities=9%  Similarity=0.205  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      .+|+|+|..|+|||++-..+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999998655

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.065  Score=43.85  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      -+|+|+|.+|+|||++...+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999887764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.24  E-value=0.059  Score=46.62  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      -+|+|+.||||||+-++|+-.||.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCC
Confidence            468999999999999999777664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.054  Score=43.60  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=18.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHH
Q 019172          187 TSIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .+|+|+|.+|+||||+-..+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999886643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.15  E-value=0.078  Score=45.44  Aligned_cols=18  Identities=6%  Similarity=0.117  Sum_probs=15.1

Q ss_pred             CceEEEEcCCCCChHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVA  203 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVA  203 (345)
                      ..+++|+|.+|+||||+.
T Consensus        14 ~~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SSEEEECCCTTSCHHHHH
T ss_pred             CCCEEEEeeCCccHHHHH
Confidence            456788999999999874

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.99  E-value=0.12  Score=52.02  Aligned_cols=69  Identities=16%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             CCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          141 PTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       141 p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      |+..+-.++++.+.. ++........|-+....+..-..+...-+..+|+|.|-+|||||+-.|.+-+.|
T Consensus        47 P~k~l~~y~~~~~~~-y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          47 PYKQLPIYSEKIIDM-YKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CSSCCTTCCHHHHHH-TTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHH-HcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444343456655443 222222223355544433322223445567899999999999999999887666

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.97  E-value=0.092  Score=45.04  Aligned_cols=33  Identities=12%  Similarity=0.142  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC-----ceeeCcH
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKE  219 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~-----~fID~D~  219 (345)
                      +.|.|.|=-|+||||++-.||..|..     -.||+|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46888999999999999888877753     4789883

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.91  E-value=0.055  Score=43.57  Aligned_cols=20  Identities=15%  Similarity=0.187  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCChHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA  207 (345)
                      +|.|+|.+++||||+...|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48899999999999999884

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.84  E-value=0.064  Score=43.70  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhh
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .-+|.|+|.+.+||||+...|...-
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhc
Confidence            4479999999999999999997543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.48  E-value=0.14  Score=51.58  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=40.7

Q ss_pred             cCCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          140 KPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       140 ~p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|+..+-.++++.+.. ++........|.+....+..-..+...-+..+|+|.|-+|||||.-.|.+-+.|
T Consensus        80 NP~k~l~iy~~~~~~~-y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2          80 NPFKRIPIYTQEMVDI-FKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCSSCCSCCSHHHHHH-HTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHH-HcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            3444343455555443 322222223455554433322223344467899999999999999999886655

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.37  E-value=0.19  Score=51.17  Aligned_cols=45  Identities=13%  Similarity=0.042  Sum_probs=30.9

Q ss_pred             cchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          166 WPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       166 ~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|-+....+..-..+...-+..+|+|.|-+|||||+-.+.+=+.|
T Consensus       103 pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         103 PPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            455654433322334445568899999999999999999776555

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.20  E-value=0.11  Score=40.09  Aligned_cols=28  Identities=11%  Similarity=-0.006  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      -+..+|.++.|+|||+++-.+....|..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3567889999999999987766666643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.17  E-value=0.076  Score=42.80  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCChHHHHHHHHH
Q 019172          188 SIFLVGDSTEVNEKVALELAV  208 (345)
Q Consensus       188 ~IvLIG~~GSGKSTVAk~LA~  208 (345)
                      .|.|+|.+++||||+-..|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999998843

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.11  Score=42.38  Aligned_cols=25  Identities=12%  Similarity=0.207  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+|+++|.+|+||||+...+...
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999977543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.88  E-value=0.11  Score=43.90  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .+.+++|.|++|+||+|+|+.||+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999999866

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.53  E-value=0.15  Score=47.18  Aligned_cols=26  Identities=8%  Similarity=0.075  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      =+||.|+|.-|+||||+...|-...|
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            36899999999999999999976555

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.32  E-value=0.17  Score=45.01  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             cCCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          184 LKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .+...++|.|++++|||+++..|+..+|-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            34567899999999999999999999974

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.17  E-value=0.089  Score=39.40  Aligned_cols=20  Identities=20%  Similarity=0.096  Sum_probs=17.4

Q ss_pred             CCceEEEEcCCCCChHHHHH
Q 019172          185 KGTSIFLVGDSTEVNEKVAL  204 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk  204 (345)
                      ++++.+|.+++|+|||.++-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            57899999999999997763

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.79  E-value=0.15  Score=45.23  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhhCC
Q 019172          189 IFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      -+|+|..|||||++-.+++=.||.
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            368999999999999999877764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.40  E-value=0.19  Score=42.44  Aligned_cols=29  Identities=10%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             hhhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172          181 MQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       181 ~~~l~~~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      ...+.+++++++++.|+|||+++-..+..
T Consensus        53 ~~~l~g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          53 KRILRKESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             HHHHTTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEecCCChHHHHHHHHHHH
Confidence            45678999999999999999988776643

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=87.39  E-value=0.24  Score=49.82  Aligned_cols=45  Identities=18%  Similarity=0.018  Sum_probs=30.5

Q ss_pred             cchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          166 WPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       166 ~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      .|-+....+..-..+....++.+|+|.|-+|||||...+.+-+.|
T Consensus        74 ~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          74 DPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345544333222223344578899999999999999999886655

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.18  E-value=0.19  Score=51.21  Aligned_cols=69  Identities=9%  Similarity=0.074  Sum_probs=38.8

Q ss_pred             CCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172          141 PTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (345)
Q Consensus       141 p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L  210 (345)
                      |+..+-.+|++.+.. ++........|.+...-+..-..+...-+..+|+|.|-+|||||.-++.+-+.|
T Consensus        77 P~k~l~iy~~~~~~~-y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2          77 PYRRLPIYTDSVIAK-YRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             CSSCCSTTSHHHHHH-HTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444333455555443 222222222355544332222223334467899999999999999988876655

>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

Probab=87.09  E-value=0.053  Score=50.45  Aligned_cols=60  Identities=8%  Similarity=-0.031  Sum_probs=44.8

Q ss_pred             ccceeeeeeecCcccccccceeEecC-Cce--EEEEeeccCCccceeeeccccccccCCCceeeecccc
Q 019172           87 SAEIELRLQLGSLEIQSSKDIFVDAD-GTC--LTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ  152 (345)
Q Consensus        87 ~~Ele~rl~l~~~~~~~sr~i~I~~~-d~~--L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~  152 (345)
                      ..|-.+++.|.|.  ..-+...|++| |||  |++.+.+-......|+..+|+.+.+|.    |||+..
T Consensus       359 i~~~~d~l~I~G~--~~l~~~~v~s~~DHRiama~~iaal~~~g~~I~~~~~i~ksyP~----F~~~l~  421 (427)
T d1g6sa_         359 VEEGHDYIRITPP--EKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPD----YFEQLA  421 (427)
T ss_dssp             EEECSSEEEEECC--SSCCCCEECCTTCHHHHHHHHGGGSSSSCEEEESGGGGGGTCTT----HHHHHH
T ss_pred             EEEeCCEEEEeCC--CCCccceEeCCCCHHHHHHHHHHHHcCCCeEEeCCCcccccCHH----HHHHHH
Confidence            3466778888883  33456789996 799  777777765556668889999999998    888754

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.93  E-value=0.33  Score=40.42  Aligned_cols=31  Identities=16%  Similarity=0.026  Sum_probs=25.8

Q ss_pred             hcCCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (345)
Q Consensus       183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~  213 (345)
                      .+...+.+|.+++|+|||-++-.++..++.+
T Consensus        82 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          82 WLVDKRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             HTTTSEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             HHhCCCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            4456677889999999999999999888754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.87  E-value=0.18  Score=41.60  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             eEEEE-cCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          188 SIFLV-GDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       188 ~IvLI-G~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      .|.++ |=.|+||||++..||..|.     .-+||+|-
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45555 7789999999998877764     33778873

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.66  E-value=0.14  Score=43.57  Aligned_cols=21  Identities=5%  Similarity=0.067  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHh
Q 019172          189 IFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       189 IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      |.|+|.+.+||||+...|-..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            999999999999999888654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.2  Score=45.51  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.2

Q ss_pred             CceEEEEcCCCCChHHHHHHHH
Q 019172          186 GTSIFLVGDSTEVNEKVALELA  207 (345)
Q Consensus       186 ~~~IvLIG~~GSGKSTVAk~LA  207 (345)
                      .++++|+|.+|+|||+..+.+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            5789999999999999875433

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.23  Score=45.81  Aligned_cols=25  Identities=12%  Similarity=0.082  Sum_probs=19.8

Q ss_pred             hhcCCceEEEEcCCCCChHHHHHHH
Q 019172          182 QLLKGTSIFLVGDSTEVNEKVALEL  206 (345)
Q Consensus       182 ~~l~~~~IvLIG~~GSGKSTVAk~L  206 (345)
                      ..+...-.+|.|++|+||||+...+
T Consensus       159 ~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         159 VALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             HHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             HHHcCCeEEEEcCCCCCceehHHHH
Confidence            4556778889999999999887543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.18  E-value=0.26  Score=40.48  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             ceEEEE-cCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172          187 TSIFLV-GDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (345)
Q Consensus       187 ~~IvLI-G~~GSGKSTVAk~LA~~Lg-----~~fID~D~  219 (345)
                      +.|.+. +-.|+||||++..||..|.     .-++|+|.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            456666 6689999999998887663     34788873

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.87  E-value=0.38  Score=36.30  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (345)
Q Consensus       185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~  219 (345)
                      ..++|+++|.-|+|.|.+|+.|.++ |+.+-=.|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~   40 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDI   40 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEES
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeC
Confidence            4688999999999999999988654 887766664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.38  Score=43.58  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=27.4

Q ss_pred             hhhhcCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (345)
Q Consensus       180 ~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg  211 (345)
                      +...-+|.++.|+|.+|+|||++...+++...
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            44566899999999999999999999998553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.74  E-value=0.3  Score=42.25  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=23.6

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCc
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D  218 (345)
                      +.|.+.|=-|.||||++--||..|   |+.  .||+|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            457788999999999766665544   443  48888

>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.75  E-value=0.093  Score=48.89  Aligned_cols=58  Identities=5%  Similarity=0.019  Sum_probs=42.3

Q ss_pred             ceeeeeeecCcccccccceeEecC-Cce--EEEEeeccC-C-ccceeeeccccccccCCCceeeecccc
Q 019172           89 EIELRLQLGSLEIQSSKDIFVDAD-GTC--LTVRVNRSG-S-FITLIETNQLFDKIKPTETIWYIDEDQ  152 (345)
Q Consensus        89 Ele~rl~l~~~~~~~sr~i~I~~~-d~~--L~~~vls~~-~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~  152 (345)
                      |-+++|.|.|.  ..-+...|++| |||  |++.+++-. . -.+.|+.-.|++|.+|.    ||++.+
T Consensus       360 ~~~d~l~I~G~--~~l~g~~v~s~~DHRiama~~i~al~~~~g~~~I~~~~~v~ksyP~----F~~~l~  422 (427)
T d1rf6a_         360 PTADGMIIKGK--SALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPS----FFDDLE  422 (427)
T ss_dssp             EETTEEEEEEC--CCCCCEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGGGGGGTCTT----HHHHHH
T ss_pred             EECCEEEEECC--CCCcCCEEECCCcHHHHHHHHHHHHhcCCCcEEEcCCcEEECCchh----HHHHHH
Confidence            34588999883  33446779997 699  788787742 2 23668889999999998    777654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=80.76  E-value=0.44  Score=40.01  Aligned_cols=23  Identities=4%  Similarity=0.044  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHh
Q 019172          187 TSIFLVGDSTEVNEKVALELAVG  209 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~  209 (345)
                      -||.++|...+||||+...|-..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            47999999999999999988654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.32  E-value=0.58  Score=40.46  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (345)
Q Consensus       187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~  212 (345)
                      .||.++|.-++||||+...|.-.+|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            48999999999999999998776664