Citrus Sinensis ID: 019180
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 345 | ||||||
| 255555723 | 373 | Protein MYG1, putative [Ricinus communis | 0.979 | 0.906 | 0.816 | 1e-168 | |
| 297805440 | 372 | hypothetical protein ARALYDRAFT_330340 [ | 1.0 | 0.927 | 0.783 | 1e-164 | |
| 297742425 | 338 | unnamed protein product [Vitis vinifera] | 0.962 | 0.982 | 0.822 | 1e-163 | |
| 225426621 | 361 | PREDICTED: UPF0160 protein MYG1, mitocho | 0.962 | 0.919 | 0.822 | 1e-163 | |
| 79527307 | 373 | Metal-dependent protein hydrolase [Arabi | 1.0 | 0.924 | 0.777 | 1e-162 | |
| 9757942 | 346 | GAMM1 protein-like [Arabidopsis thaliana | 1.0 | 0.997 | 0.777 | 1e-162 | |
| 15146292 | 346 | AT5g41970/MJC20_7 [Arabidopsis thaliana] | 1.0 | 0.997 | 0.774 | 1e-161 | |
| 449452196 | 345 | PREDICTED: UPF0160 protein-like [Cucumis | 0.936 | 0.936 | 0.829 | 1e-161 | |
| 356504252 | 369 | PREDICTED: UPF0160 protein MYG1, mitocho | 0.979 | 0.915 | 0.778 | 1e-160 | |
| 147827008 | 325 | hypothetical protein VITISV_034702 [Viti | 0.930 | 0.987 | 0.814 | 1e-155 |
| >gi|255555723|ref|XP_002518897.1| Protein MYG1, putative [Ricinus communis] gi|223541884|gb|EEF43430.1| Protein MYG1, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 276/338 (81%), Positives = 307/338 (90%)
Query: 8 SSPAYSTSSPSQTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLD 67
SSPAYST SP P KRVGTHNGSFHCDEALGCFMIRLT+KF NA+IVRSRD +VL+ LD
Sbjct: 36 SSPAYSTGSPCHAPPKRVGTHNGSFHCDEALGCFMIRLTNKFSNAEIVRSRDLQVLESLD 95
Query: 68 AVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGH 127
AVLDVGGVYDP +D YDHHQKGFEEVFGHGF+TKLSSAGLVYKHFGKE+IAKEL +DEGH
Sbjct: 96 AVLDVGGVYDPVHDRYDHHQKGFEEVFGHGFTTKLSSAGLVYKHFGKEIIAKELQLDEGH 155
Query: 128 PDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSA 187
P+VHRLFLA+YK+FMEAIDA+DNGINQYDTDKPPRYVNNT+LSSRVG+LNLDW EPDQS
Sbjct: 156 PNVHRLFLAIYKSFMEAIDAVDNGINQYDTDKPPRYVNNTHLSSRVGRLNLDWIEPDQSP 215
Query: 188 ERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCP 247
E+ENE FQ+ M LAG EFLD++ ++ +SWLPARSIV+EC+ R D DPSGEIMVL FCP
Sbjct: 216 EKENEVFQRAMTLAGSEFLDSLHYHAKSWLPARSIVMECLEARSDVDPSGEIMVLATFCP 275
Query: 248 WKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDE 307
WKLHLFE+EEE+KIEP IKYVLY+DDR K WRVQAVAV+PDRFESR+ LPAQWRGLRDDE
Sbjct: 276 WKLHLFEIEEELKIEPSIKYVLYQDDRSKHWRVQAVAVAPDRFESRRALPAQWRGLRDDE 335
Query: 308 LSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALKL 345
LS+E+GIP CVFVHMSGFIGGN+SY GALAMARAALKL
Sbjct: 336 LSRESGIPACVFVHMSGFIGGNKSYEGALAMARAALKL 373
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805440|ref|XP_002870604.1| hypothetical protein ARALYDRAFT_330340 [Arabidopsis lyrata subsp. lyrata] gi|297316440|gb|EFH46863.1| hypothetical protein ARALYDRAFT_330340 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|297742425|emb|CBI34574.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225426621|ref|XP_002280827.1| PREDICTED: UPF0160 protein MYG1, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|79527307|ref|NP_199012.2| Metal-dependent protein hydrolase [Arabidopsis thaliana] gi|332007365|gb|AED94748.1| Metal-dependent protein hydrolase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9757942|dbj|BAB08430.1| GAMM1 protein-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15146292|gb|AAK83629.1| AT5g41970/MJC20_7 [Arabidopsis thaliana] gi|19699166|gb|AAL90949.1| AT5g41970/MJC20_7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449452196|ref|XP_004143846.1| PREDICTED: UPF0160 protein-like [Cucumis sativus] gi|449509379|ref|XP_004163571.1| PREDICTED: UPF0160 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356504252|ref|XP_003520911.1| PREDICTED: UPF0160 protein MYG1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147827008|emb|CAN62285.1| hypothetical protein VITISV_034702 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 345 | ||||||
| TAIR|locus:2165760 | 373 | AT5G41970 "AT5G41970" [Arabido | 0.939 | 0.868 | 0.771 | 1.9e-140 | |
| TAIR|locus:2082981 | 354 | AT3G49320 "AT3G49320" [Arabido | 0.930 | 0.906 | 0.676 | 2.7e-123 | |
| MGI|MGI:1929864 | 380 | Myg1 "melanocyte proliferating | 0.913 | 0.828 | 0.487 | 2.9e-80 | |
| RGD|1359237 | 381 | Myg1 "melanocyte proliferating | 0.913 | 0.826 | 0.490 | 3.7e-80 | |
| UNIPROTKB|Q9HB07 | 376 | C12orf10 "UPF0160 protein MYG1 | 0.913 | 0.837 | 0.484 | 9.7e-80 | |
| UNIPROTKB|Q58DG1 | 381 | Q58DG1 "UPF0160 protein MYG1, | 0.913 | 0.826 | 0.481 | 4.2e-79 | |
| ZFIN|ZDB-GENE-060312-32 | 381 | myg1 "melanocyte proliferating | 0.910 | 0.824 | 0.442 | 4e-74 | |
| DICTYBASE|DDB_G0267768 | 329 | DDB_G0267768 "metal-dependent | 0.895 | 0.939 | 0.450 | 8.4e-74 | |
| CGD|CAL0002719 | 354 | orf19.4532 [Candida albicans ( | 0.924 | 0.901 | 0.430 | 4.1e-72 | |
| UNIPROTKB|Q59TJ7 | 354 | CaO19.4532 "Putative uncharact | 0.924 | 0.901 | 0.430 | 4.1e-72 |
| TAIR|locus:2165760 AT5G41970 "AT5G41970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
Identities = 250/324 (77%), Positives = 285/324 (87%)
Query: 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKXXXXXXXXXXXXXXYDPSND 81
+K+VGTHNGSFHCDEALGCFMIRL DKF A IVRSRDPK YDP +D
Sbjct: 50 VKKVGTHNGSFHCDEALGCFMIRLVDKFSGADIVRSRDPKILAELDAVLDVGGVYDPEHD 109
Query: 82 CYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNF 141
YDHHQKGFEEVFGHGF+TKLSSAGLVYKHFGKE+IAKELNV++ HPDV RLFLAVYK+F
Sbjct: 110 RYDHHQKGFEEVFGHGFNTKLSSAGLVYKHFGKEIIAKELNVEQDHPDVLRLFLAVYKSF 169
Query: 142 MEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLA 201
MEAIDA+DNGIN+YDTD+PPRYVNNT+LS RVG+LNLDW +PDQS E+ENEAFQ+ M LA
Sbjct: 170 MEAIDAVDNGINRYDTDQPPRYVNNTHLSPRVGRLNLDWIDPDQSQEKENEAFQRAMALA 229
Query: 202 GKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKI 261
GKEFL++V+F+ RSWLPARSIV++C+ ER+ DPSGEIM+L RFCPWKLHLFELE+EMKI
Sbjct: 230 GKEFLESVQFHARSWLPARSIVMQCLEERFKTDPSGEIMILDRFCPWKLHLFELEQEMKI 289
Query: 262 EPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVH 321
EPLIKYV+Y+D+R KQWRVQAVAV+PDRFE+RKPLP +WRGLRD+ELSK A IPGCVFVH
Sbjct: 290 EPLIKYVIYQDERAKQWRVQAVAVAPDRFENRKPLPEKWRGLRDEELSKAAEIPGCVFVH 349
Query: 322 MSGFIGGNQSYGGALAMARAALKL 345
MSGFIGGNQSY GAL+MA+ AL L
Sbjct: 350 MSGFIGGNQSYDGALSMAQTALTL 373
|
|
| TAIR|locus:2082981 AT3G49320 "AT3G49320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:1929864 Myg1 "melanocyte proliferating gene 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1359237 Myg1 "melanocyte proliferating gene 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9HB07 C12orf10 "UPF0160 protein MYG1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q58DG1 Q58DG1 "UPF0160 protein MYG1, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060312-32 myg1 "melanocyte proliferating gene 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0267768 DDB_G0267768 "metal-dependent protein hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| CGD|CAL0002719 orf19.4532 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q59TJ7 CaO19.4532 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 345 | |||
| pfam03690 | 315 | pfam03690, UPF0160, Uncharacterized protein family | 0.0 | |
| COG4286 | 306 | COG4286, COG4286, Uncharacterized conserved protei | 1e-103 |
| >gnl|CDD|217674 pfam03690, UPF0160, Uncharacterized protein family (UPF0160) | Back alignment and domain information |
|---|
Score = 504 bits (1300), Expect = 0.0
Identities = 188/322 (58%), Positives = 235/322 (72%), Gaps = 7/322 (2%)
Query: 23 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDC 82
K++GTH+GSFH DE L M++L ++ +A+IVR+RDP+VL+ D V+DVGGVYDP
Sbjct: 1 KKIGTHSGSFHADEVLAVAMLKLLPEYKDAEIVRTRDPEVLEKCDIVVDVGGVYDPEKKR 60
Query: 83 YDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFM 142
+DHHQ+GF E F TKLSSAGLVYKHFGKE+I + L + + DV L+ VYK+F+
Sbjct: 61 FDHHQRGFPETFLREDGTKLSSAGLVYKHFGKEIIRELLKLLD-EEDVELLYDKVYKSFV 119
Query: 143 EAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAG 202
E IDAIDNG++QYD P+Y NT+LS+RVG+LN W EPD E E+ AF + ++LAG
Sbjct: 120 EEIDAIDNGVSQYDG--EPKYKINTSLSARVGRLNPTWNEPDP--EDEDAAFLKAVELAG 175
Query: 203 KEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIE 262
EF V +Y SWLPAR+IV E IA+R++ DPSG I+VL R CPWK HLFELE+E +E
Sbjct: 176 SEFERFVDYYAASWLPARAIVAEAIAKRFEVDPSGRILVLDRGCPWKEHLFELEKEHNLE 235
Query: 263 PLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHM 322
IK+VLY D G QWRVQ V V P FESRKPLP WRGLRD+ELS+ +GIPG VFVH
Sbjct: 236 G-IKFVLYPDGSG-QWRVQTVPVEPGSFESRKPLPEAWRGLRDEELSEVSGIPGAVFVHA 293
Query: 323 SGFIGGNQSYGGALAMARAALK 344
SGFIGG ++ GALAMA AL+
Sbjct: 294 SGFIGGAKTREGALAMAELALE 315
|
This family of proteins contains a large number of metal binding residues. The patterns are suggestive of a phosphoesterase function. The conserved DHH motif may mean this family is related to pfam01368. Length = 315 |
| >gnl|CDD|226736 COG4286, COG4286, Uncharacterized conserved protein related to MYG1 family [Function unknown] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 345 | |||
| KOG2948 | 327 | consensus Predicted metal-binding protein [General | 100.0 | |
| PF03690 | 318 | UPF0160: Uncharacterised protein family (UPF0160); | 100.0 | |
| COG4286 | 306 | Uncharacterized conserved protein related to MYG1 | 100.0 |
| >KOG2948 consensus Predicted metal-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-135 Score=958.12 Aligned_cols=320 Identities=62% Similarity=1.099 Sum_probs=311.5
Q ss_pred CceEEecCCCccchhHHHHHHHhhccccCCceEEEcCCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCccc
Q 019180 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTK 101 (345)
Q Consensus 22 ~~~IgTH~G~FHaDEvlA~~~L~~l~~y~~a~iiRTRd~~~l~~cDiVvDVGgvYDp~~~rfDHHQr~F~~t~~~~~~~~ 101 (345)
+++||||||+|||||+|||+|||++|+|+||+|+|||||++|+.|||||||||+|||+++|||||||+|++||+.+++||
T Consensus 4 ~~~i~THnG~FH~DEalAc~mLr~lp~f~dAeIvRtRd~~~l~s~DIvvDVGg~yDp~~~ryDHHQr~F~ETfs~~~~tK 83 (327)
T KOG2948|consen 4 TKKIGTHNGTFHCDEALACFMLRLLPEFKDAEIVRTRDPKVLESCDIVVDVGGVYDPEKKRYDHHQRGFFETFSPKYKTK 83 (327)
T ss_pred CceEEecCCceehhHHHHHHHHHhccccCCCeeEecCCHHHHhhcCEEEecCccccccccccchhhhhhhhhcCCcccee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCCccccCCChhhhhccCCCCCC
Q 019180 102 LSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 181 (345)
Q Consensus 102 lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDNGv~~~~~~~~~~y~~~~~ls~~I~~lNP~w~ 181 (345)
||||||||||||+++|+++++...++++++.+|.+||++||+++|||||||++|. +++|+|..+|+||+||++|||.||
T Consensus 84 LSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kvY~~Fve~~DAiDNGi~~y~-~~~Pry~~~~~l~~rv~~~N~~w~ 162 (327)
T KOG2948|consen 84 LSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKVYKNFVEALDAIDNGISQYG-EIEPRYKSSTSLSHRVGRFNPDWN 162 (327)
T ss_pred ecccceeHHHhhHHHHHHHhcccCChhHHHHHHHHHHHHHHHHhhccccchhhhc-CCCCccccccchHHHHhhcCCCcc
Confidence 9999999999999999999988889999999999999999999999999999994 789999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcCcCCCCcEEEEeccCCchhhHHHhHhhhcc
Q 019180 182 EPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKI 261 (345)
Q Consensus 182 ~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE~e~~~ 261 (345)
+. ++++++++|.+||+++|++|++.|..++++|+|||++|++|+++|+++|+||.|++++++||||+|||+||+|+++
T Consensus 163 e~--~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPar~~v~~ai~er~~~d~sG~i~v~~~~cPWk~hlfelE~e~~i 240 (327)
T KOG2948|consen 163 ED--SDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPARELVEEAIAERFDVDPSGIILVLKQFCPWKEHLFELEKEYKI 240 (327)
T ss_pred cC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHhcCCCCCceEEEecCCCchHHHHHHHHHHhCC
Confidence 84 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCCCCeEEEEEeCCCCCCcCCCCCCcccCCCChhHhhhhhCCCCceEeecCCcccccCCHHHHHHHHHH
Q 019180 262 EPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARA 341 (345)
Q Consensus 262 ~~~i~fvi~p~~~~~~wriq~Vp~~~~sF~~R~~LPe~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA~~ 341 (345)
+.+|+||||+| .+++|||||||+.++||++|+|||++|||||||||+++||||||+|||+|||||||+|+||||+||++
T Consensus 241 e~~i~fvlf~d-~~~~wRVqaVpv~p~sFe~R~pLp~~WRGLrdeeLs~~SgIpgc~FVH~SGFIGgn~T~EgAl~Mar~ 319 (327)
T KOG2948|consen 241 EVKIKFVLFTD-ESGSWRVQAVPVDPGSFESRKPLPEPWRGLRDEELSEVSGIPGCIFVHASGFIGGNKTREGALEMARK 319 (327)
T ss_pred CcceEEEEEeC-CCCcEEEEEEecCCCcccccCCCchhhccccchhhhhhcCCCCeEEEeecccccCcccHHHHHHHHHH
Confidence 99999999998 45699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 019180 342 ALKL 345 (345)
Q Consensus 342 al~~ 345 (345)
||++
T Consensus 320 sl~~ 323 (327)
T KOG2948|consen 320 SLEA 323 (327)
T ss_pred hhcc
Confidence 9964
|
|
| >PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase | Back alignment and domain information |
|---|
| >COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 345 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 7e-10
Identities = 30/304 (9%), Positives = 74/304 (24%), Gaps = 108/304 (35%)
Query: 44 RLTDKFFNAQIVRS-------RDPKVLDDLD------------AVLDVGGVYDPSNDCYD 84
L + ++ K + + V D ++ D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 85 HHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDE---------GHPDVHRLFL 135
HH K L+ K L+ +P +
Sbjct: 293 HHSMTLTP------------------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 136 AVYKNFMEAID------------AIDNGINQYD-TDKPPRYVN------NTNLSSRVGKL 176
++ + D I++ +N + + + + ++ + + L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--L 392
Query: 177 NLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVEC---------- 226
+L W + + + L ++ +P+ + ++
Sbjct: 393 SLIWFDVI---KSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 227 -IAERYDYDPSGEIMVLKRFCPWKL---------------HLFELEEEMKIEPLIKYVLY 270
I + Y+ + K F L HL +E ++ ++
Sbjct: 448 SIVDHYN--------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VF 497
Query: 271 EDDR 274
D R
Sbjct: 498 LDFR 501
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00