Citrus Sinensis ID: 019218

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASARENSYISFP
cccccEEEEEEEEcccHHHHHHHccccccccccccccccEEEccccccEEEEEEEEccccccccEEEccEEEccccccHHHHHHHHHHHccccccccHHHHHHccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccEEEcccccccccccccEEEcccccccccEEEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHcccccccccc
ccccccEEEEEEEcccEEEEEEEccccccccEccccccEEEEEcHcccEEEEEEEEcccccccEEEEcccEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccEEEccccccccccEEEEEEEccccccccccccccccHccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEccccccEEEccHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEcccHHHHHHHHHHHccccEEEEcc
MAAEKWVLMVTAQTPTNIAVIKYwgkrdetlilpvndsisvtldpdhlcttttvavspsfdqdrmwlngkeislgggryqNCLKEIRSracdvedtekgIKIEKKDWQKLHLHIAsfnnfptaaglaSSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWilgkegngsdslaVQLVDEEHWNDLVIIIAVVSSrqketssttgmreSVETSLLLQHRAKEVVPKRIVQMEEAiqnhdfssfaqltcadsnqfhavcldtsppifymndtsHRIISYVErwnrsvgspqvCSFFAALSGrcyefcdlkHIFVLSILSAsarensyisfp
MAAEKWVLMvtaqtptniAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVavspsfdqdrmWLNGKeislgggryqNCLKEIRSracdvedtekGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVssrqketssttgmresvetslllqhrakEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILsasarensyisfp
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTaaglassaagfaCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASARENSYISFP
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE******AIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV*********************LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSA***********
******V**VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR************SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASARENSYIS*P
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS*****************TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASAR********
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASARENSYISFP
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MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKHIFVLSILSASARENSYISFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q99JF5401 Diphosphomevalonate decar yes no 0.889 0.763 0.564 1e-86
Q62967401 Diphosphomevalonate decar yes no 0.889 0.763 0.548 2e-84
Q5U403400 Diphosphomevalonate decar yes no 0.854 0.735 0.559 4e-84
Q54YQ9391 Diphosphomevalonate decar yes no 0.848 0.746 0.498 7e-84
P53602400 Diphosphomevalonate decar yes no 0.889 0.765 0.536 3e-83
Q0P570400 Diphosphomevalonate decar yes no 0.877 0.755 0.520 2e-82
Q751D8397 Diphosphomevalonate decar yes no 0.805 0.697 0.522 6e-77
Q6BY07388 Diphosphomevalonate decar yes no 0.845 0.75 0.522 9e-77
P32377396 Diphosphomevalonate decar yes no 0.875 0.760 0.504 5e-74
O13963393 Diphosphomevalonate decar yes no 0.938 0.821 0.479 2e-73
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function desciption
 Score =  320 bits (820), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 218/312 (69%), Gaps = 6/312 (1%)

Query: 1   MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
           MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  
Sbjct: 1   MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKD 60

Query: 60  FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
           F +DR+WLNG+E  +G  R Q CL+EIR  A     TE G  +      K+H  +AS NN
Sbjct: 61  FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNN 118

Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
           FPTAAGLASSAAG+ACL ++LA++  +   +  LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175

Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
           + +G DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVP 235

Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
           +R+ +M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N  
Sbjct: 236 ERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH 295

Query: 300 VGSPQVCSFFAA 311
            G  +V   F A
Sbjct: 296 QGQTKVAYTFDA 307
Performs the first committed step in the biosynthesis of isoprenes.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function description
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
255560311415 diphosphomevalonate decarboxylase, putat 0.898 0.744 0.870 1e-153
224110186416 predicted protein [Populus trichocarpa] 0.904 0.747 0.861 1e-152
224097622416 predicted protein [Populus trichocarpa] 0.904 0.747 0.864 1e-152
164604978415 diphosphomevelonate decarboxylase [Hevea 0.898 0.744 0.857 1e-151
16417950415 mevalonate disphosphate decarboxylase [H 0.898 0.744 0.854 1e-151
356575484421 PREDICTED: diphosphomevalonate decarboxy 0.904 0.738 0.840 1e-150
18410026419 diphosphomevalonate decarboxylase [Arabi 0.904 0.742 0.848 1e-150
343466161418 diphosphomevalonate decarboxylase [Sirai 0.904 0.744 0.839 1e-149
15224931412 mevalonate diphosphate decarboxylase 1 [ 0.904 0.754 0.839 1e-149
21593243419 diphosphomevalonate decarboxylase-like p 0.904 0.742 0.845 1e-149
>gi|255560311|ref|XP_002521172.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] gi|223539619|gb|EEF41203.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/309 (87%), Positives = 289/309 (93%)

Query: 3   AEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQ 62
           AE+WV MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDP HLCTTTTVAVSP+FDQ
Sbjct: 2   AERWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPAFDQ 61

Query: 63  DRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 122
           DRMWLNGKEISL GGRYQNCL+EIR+RACDVED EKGIKI KKDW+KLH+HIASFNNFPT
Sbjct: 62  DRMWLNGKEISLSGGRYQNCLREIRARACDVEDKEKGIKIAKKDWEKLHVHIASFNNFPT 121

Query: 123 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGN 182
           AAGLASSAAGFACLVF+LAKLMN +E+ S+LSAIARQGSGSACRSLFGGFVKWI+GK  +
Sbjct: 122 AAGLASSAAGFACLVFALAKLMNAREDNSELSAIARQGSGSACRSLFGGFVKWIMGKVDD 181

Query: 183 GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 242
           GSDSLAVQLVDE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPKRI
Sbjct: 182 GSDSLAVQLVDEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRI 241

Query: 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 302
           +QMEEAI   DF+SFAQ+TCADSNQFHAVCLDT PPIFYMNDTSHRIIS VE+WNRS  +
Sbjct: 242 IQMEEAINKRDFASFAQITCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSEET 301

Query: 303 PQVCSFFAA 311
           PQV   F A
Sbjct: 302 PQVAYTFDA 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224110186|ref|XP_002315441.1| predicted protein [Populus trichocarpa] gi|222864481|gb|EEF01612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097622|ref|XP_002311015.1| predicted protein [Populus trichocarpa] gi|222850835|gb|EEE88382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164604978|dbj|BAF98285.1| diphosphomevelonate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|16417950|gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|356575484|ref|XP_003555870.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|18410026|ref|NP_566995.1| diphosphomevalonate decarboxylase [Arabidopsis thaliana] gi|332645683|gb|AEE79204.1| diphosphomevalonate decarboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|343466161|gb|AEM42974.1| diphosphomevalonate decarboxylase [Siraitia grosvenorii] Back     alignment and taxonomy information
>gi|15224931|ref|NP_181404.1| mevalonate diphosphate decarboxylase 1 [Arabidopsis thaliana] gi|2288887|emb|CAA74700.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|3250736|emb|CAA76803.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|3786002|gb|AAC67348.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|31711704|gb|AAP68208.1| At2g38700 [Arabidopsis thaliana] gi|110736665|dbj|BAF00296.1| mevalonate diphosphate decarboxylase [Arabidopsis thaliana] gi|330254480|gb|AEC09574.1| mevalonate diphosphate decarboxylase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593243|gb|AAM65192.1| diphosphomevalonate decarboxylase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2080265419 AT3G54250 [Arabidopsis thalian 0.904 0.742 0.810 2.6e-134
TAIR|locus:2064092412 MVD1 "mevalonate diphosphate d 0.904 0.754 0.800 3.3e-134
MGI|MGI:2179327401 Mvd "mevalonate (diphospho) de 0.889 0.763 0.528 4.2e-79
UNIPROTKB|Q642E5401 Mvd "Mevalonate (Diphospho) de 0.889 0.763 0.512 3.4e-77
RGD|621292401 Mvd "mevalonate (diphospho) de 0.889 0.763 0.512 4.3e-77
ZFIN|ZDB-GENE-041114-127400 zgc:100824 "zgc:100824" [Danio 0.901 0.775 0.507 1.5e-76
UNIPROTKB|P53602400 MVD "Diphosphomevalonate decar 0.889 0.765 0.501 5e-76
FB|FBgn0030683388 CG8239 [Drosophila melanogaste 0.866 0.768 0.487 3.5e-75
UNIPROTKB|E2QYJ9400 MVD "Uncharacterized protein" 0.889 0.765 0.504 9.3e-75
UNIPROTKB|Q0P570400 MVD "Diphosphomevalonate decar 0.877 0.755 0.485 1.5e-74
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 252/311 (81%), Positives = 271/311 (87%)

Query:     1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
             MA EKWV MVTAQTPTNIAVIKYWGKRDE  ILPVNDSISVTLDPDHLCT TTVAVSP+F
Sbjct:     1 MATEKWVFMVTAQTPTNIAVIKYWGKRDEVRILPVNDSISVTLDPDHLCTVTTVAVSPAF 60

Query:    61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
             D+DRMWLNGKEISL G RYQNCL+EIR RA DVED EKGIKI KKDW+KL+LHIAS NNF
Sbjct:    61 DRDRMWLNGKEISLSGSRYQNCLREIRGRAGDVEDMEKGIKIRKKDWEKLNLHIASHNNF 120

Query:   121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
             PT            CLVFSLAKLMN+ E+ S LSAIARQGSGSACRSLFGGFVKW +G +
Sbjct:   121 PTAAGLASSAAGFACLVFSLAKLMNVDEDPSHLSAIARQGSGSACRSLFGGFVKWTMGSK 180

Query:   181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
              +GSDS+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPK
Sbjct:   181 EDGSDSVAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPK 240

Query:   241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
             RI+QMEEAI+N DF+SF QLTC DSNQFHAVCLDTSPPIFYMNDTSHRIIS VE+WNRS 
Sbjct:   241 RILQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKWNRSE 300

Query:   301 GSPQVCSFFAA 311
             G+PQV   F A
Sbjct:   301 GTPQVAYTFDA 311
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
TAIR|locus:2064092 MVD1 "mevalonate diphosphate decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0030683 CG8239 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q751D8MVD1_ASHGO4, ., 1, ., 1, ., 3, 30.52260.80520.6977yesno
Q99JF5MVD1_MOUSE4, ., 1, ., 1, ., 3, 30.56410.88950.7630yesno
O13963MVD1_SCHPO4, ., 1, ., 1, ., 3, 30.47900.93890.8218yesno
Q62967MVD1_RAT4, ., 1, ., 1, ., 3, 30.54800.88950.7630yesno
Q5U403MVD1_DANRE4, ., 1, ., 1, ., 3, 30.55920.85460.735yesno
P32377MVD1_YEAST4, ., 1, ., 1, ., 3, 30.50490.8750.7601yesno
Q0P570MVD1_BOVIN4, ., 1, ., 1, ., 3, 30.52060.87790.755yesno
P53602MVD1_HUMAN4, ., 1, ., 1, ., 3, 30.53690.88950.765yesno
Q6BY07MVD1_DEBHA4, ., 1, ., 1, ., 3, 30.52200.84590.75yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 0.0
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 2e-85
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 2e-84
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 5e-08
TIGR01920261 TIGR01920, Shik_kin_archae, shikimate kinase 0.002
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  616 bits (1590), Expect = 0.0
 Identities = 256/306 (83%), Positives = 282/306 (92%), Gaps = 1/306 (0%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V+MVTAQ PTNIAVIKYWGKRDE LILP+N SISVTLDPDHLC TTTVAVSPSFDQDR+W
Sbjct: 1   VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNGKEISL GGRYQNCL+EIR+RA DVED EKGIKI KKDW+KLH+HIAS+NNFPTAAGL
Sbjct: 61  LNGKEISLSGGRYQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGL 120

Query: 127 ASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSD 185
           ASSAAGFACLVF+LAKLMN+KE+   +LSAIARQGSGSACRSL+GGFVKW +GK+ +GSD
Sbjct: 121 ASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSD 180

Query: 186 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245
           S+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETS LLQHRAKEVVPKRI+QM
Sbjct: 181 SIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQM 240

Query: 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQV 305
           EEAI+N DF+SFA+LTCADSNQFHA CLDTSPPIFYMNDTS RIIS VE+WNRS G+PQV
Sbjct: 241 EEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQV 300

Query: 306 CSFFAA 311
              F A
Sbjct: 301 AYTFDA 306

Length = 343
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN02407343 diphosphomevalonate decarboxylase 100.0
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 100.0
PTZ00299336 homoserine kinase; Provisional 100.0
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 100.0
PRK01212301 homoserine kinase; Provisional 100.0
PLN02451370 homoserine kinase 100.0
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.97
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.96
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.95
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.95
PTZ00298328 mevalonate kinase; Provisional 99.95
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
PRK03926302 mevalonate kinase; Provisional 99.94
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.93
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.93
PRK01123282 shikimate kinase; Provisional 99.91
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.9
PRK05905258 hypothetical protein; Provisional 99.9
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.9
PRK03817351 galactokinase; Provisional 99.89
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.89
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.89
COG1907312 Predicted archaeal sugar kinases [General function 99.89
PRK05322387 galactokinase; Provisional 99.87
PRK00555363 galactokinase; Provisional 99.87
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.86
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.85
PLN02677387 mevalonate kinase 99.85
PRK05101382 galactokinase; Provisional 99.85
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.79
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.74
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.73
PLN02521497 galactokinase 99.72
COG2605333 Predicted kinase related to galactokinase and meva 99.67
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.63
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.56
PLN02865423 galactokinase 99.55
COG4542293 PduX Protein involved in propanediol utilization, 99.52
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.46
PTZ00290468 galactokinase; Provisional 99.45
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.3
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.45
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 97.56
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 97.34
KOG0631489 consensus Galactokinase [Carbohydrate transport an 97.29
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information 
Probab=100.00  E-value=4.1e-67  Score=493.06  Aligned_cols=325  Identities=79%  Similarity=1.193  Sum_probs=288.6

Q ss_pred             eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218            8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR   87 (344)
Q Consensus         8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~   87 (344)
                      .+++|+||+||||||||||||+.+++|.++|||++|+++++||+|+|+++++.+.|++++||+..+....++.++++.+|
T Consensus         2 ~~~ta~A~~NIALIKYWGKrD~~l~LP~nsSiSlTL~~~~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~~l~~~r   81 (343)
T PLN02407          2 VMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREIR   81 (343)
T ss_pred             eEEEEEecceeeeehhcccccccccCCCCCeeEEEccCCcceeeEEEEECCCCCCCEEEECCEecCcccHHHHHHHHHHH
Confidence            46899999999999999999999999999999999998889999999998765578999999876544569999999999


Q ss_pred             HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCC-HHHHHHHHHhccCcccc
Q 019218           88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACR  166 (344)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls-~~el~~lA~~~~Gs~a~  166 (344)
                      +.++...+++.|..|++++....+++|.++|++|.++|||||||+.+|++.|++++++++++ .++|+.+|++|+||+|+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~r  161 (343)
T PLN02407         82 ARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACR  161 (343)
T ss_pred             HHhcccccccccccccccccccccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHHH
Confidence            98876555566666665555445799999999999999999999999999999999999999 99999999999999999


Q ss_pred             ccccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHH
Q 019218          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME  246 (344)
Q Consensus       167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  246 (344)
                      |+|||+|.|..|...++.+++.+++..+.+||++++++++++..+|+++||++|+..+.++|+|+.|+.+.+..++..+.
T Consensus       162 S~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~~~~  241 (343)
T PLN02407        162 SLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQME  241 (343)
T ss_pred             HhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHHHHH
Confidence            99999999988754456789999997656789999999999999999999999999889999999999875689999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhcCCceEEEEecCCCCcEEEeecCCc-h
Q 019218          247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCSFFAALSGRCYEFCDLKH-I  325 (344)
Q Consensus       247 ~al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~g~~~~~~~sgAGpt~~~~~~~~~~-~  325 (344)
                      .||.++||+.|+++++.|++.||+++++++|++.||+|.+.++++.|+++|++.|.+.++||+|||||++ +++.+++ .
T Consensus       242 ~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~-vl~~~~~~~  320 (343)
T PLN02407        242 EAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAV-LIALNRKVA  320 (343)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCCCEE-EEEChhhhH
Confidence            9999999999999999999999999999999999999999999999999997657535999999999999 6666554 4


Q ss_pred             H-HHHHHHH
Q 019218          326 F-VLSILSA  333 (344)
Q Consensus       326 ~-~~~~l~~  333 (344)
                      + +.+.+..
T Consensus       321 ~~v~~~~~~  329 (343)
T PLN02407        321 AQLLQRLLY  329 (343)
T ss_pred             HHHHHHHHH
Confidence            4 6655543

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3f0n_A414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 1e-85
3d4j_A400 Crystal Structure Of Human Mevalonate Diphosphate D 5e-83
1fi4_A416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 3e-69
2hke_A380 Mevalonate Diphosphate Decarboxylase From Trypanoso 1e-51
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 2e-33
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 3e-33
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 5e-33
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 5e-32
3lto_A323 Crystal Structure Of A Mevalonate Diphosphate Decar 7e-15
2gs8_A317 Structure Of Mevalonate Pyrophosphate Decarboxylase 2e-06
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure 
Iteration: 1

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/304 (52%), Positives = 201/304 (66%), Gaps = 5/304 (1%)
Query: 8   LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWL 67
           LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR+WL
Sbjct: 22  LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWL 81
Query: 68  NGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXX 127
           NG+E  +G  R Q CL+EIR  A     TE G  +      K+H  +AS NNFPT     
Sbjct: 82  NGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNNFPTAAGLA 139
Query: 128 XXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSL 187
                  CL ++LA++  +   +  LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+
Sbjct: 140 SSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSI 196
Query: 188 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE 247
           A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M  
Sbjct: 197 ARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR 256
Query: 248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVCS 307
            IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +V  
Sbjct: 257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAY 316
Query: 308 FFAA 311
            F A
Sbjct: 317 TFDA 320
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate Decarboxylase From Legionella Pneumophila Length = 323 Back     alignment and structure
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From Streptococcus Pyogenes Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-110
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 1e-103
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 6e-98
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 6e-78
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 5e-76
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 1e-70
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3k17_A365 LIN0012 protein; protein structure initiative II(P 2e-06
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 5e-06
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 7e-06
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 3e-05
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 2e-04
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
 Score =  326 bits (835), Expect = e-110
 Identities = 169/302 (55%), Positives = 211/302 (69%), Gaps = 5/302 (1%)

Query: 5   KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDR 64
              LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR
Sbjct: 19  PQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDR 78

Query: 65  MWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124
           +WLNG+E  +G  R Q CL+EIR  A     TE G  +         +H+AS NNFPTAA
Sbjct: 79  IWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSY--KVHVASVNNFPTAA 136

Query: 125 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGS 184
           GLASSAAG+ACL ++LA++  ++ +   LS +AR+GSGSACRSL+GGFV+W +G++ +G 
Sbjct: 137 GLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSLYGGFVEWQMGEQADGK 193

Query: 185 DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244
           DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +
Sbjct: 194 DSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKE 253

Query: 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQ 304
           M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +
Sbjct: 254 MTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK 313

Query: 305 VC 306
           V 
Sbjct: 314 VA 315
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 100.0
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 100.0
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 100.0
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.98
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.96
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.96
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.95
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.95
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.95
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.94
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.94
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.94
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.94
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.93
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.92
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.92
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.91
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.91
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.9
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.89
3v2u_C 520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.56
4hhu_A170 OR280; engineered protein, PSI-biology, structural 84.96
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=4.2e-65  Score=493.31  Aligned_cols=323  Identities=53%  Similarity=0.815  Sum_probs=275.3

Q ss_pred             eEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHHH
Q 019218            8 LMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIR   87 (344)
Q Consensus         8 ~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~~   87 (344)
                      .+++++||+||||||||||||+.+++|.+||||++|++++|||+|+|+++++.+++++++||++.+....++.+|++.+|
T Consensus        22 ~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~iR  101 (414)
T 3f0n_A           22 LMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIR  101 (414)
T ss_dssp             EEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHHH
T ss_pred             ceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHHH
Confidence            45899999999999999999999999999999999998889999999998765568999999976655688999999999


Q ss_pred             HHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCccccc
Q 019218           88 SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRS  167 (344)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~s  167 (344)
                      +.++......-|.  ..+++...+++|+++|+||+++|||||||++||++.|+|+++++   .++|+++|++++||+++|
T Consensus       102 ~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s  176 (414)
T 3f0n_A          102 RLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRS  176 (414)
T ss_dssp             HHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGG
T ss_pred             HHhcccccccccc--cccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchH
Confidence            9877521000000  01112236899999999999999999999999999999999997   368999999999999999


Q ss_pred             cccCEEEEecccCCCCCCceEEEcCCCCCCCCceEEEEEECCCCcccCchhhhhhhhhhchhHHHHHhhhhHHHHHHHHH
Q 019218          168 LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEE  247 (344)
Q Consensus       168 ~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~vlv~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  247 (344)
                      +|||+|+|..+...++.+++..++++..+||++.++++++|...++++||++|++++++++++++++.+.+..++..|+.
T Consensus       177 ~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~~  256 (414)
T 3f0n_A          177 LYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTR  256 (414)
T ss_dssp             GSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHH
T ss_pred             hhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHHH
Confidence            99999999765323344667788865567999999999999998999999999999999999999997523789999999


Q ss_pred             HHHhCCHHHHHHHHHHhhhHHhhhhccCCCCeeeecccHHHHHHHHHHHHhhc-CCceEEEEecCCCCcEEEeecCCc-h
Q 019218          248 AIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVCSFFAALSGRCYEFCDLKH-I  325 (344)
Q Consensus       248 al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~l~~~v~~~~~~~-g~~~~~~~sgAGpt~~~~~~~~~~-~  325 (344)
                      ||.++||++|+++++.|+++||++++.++||+.||+|.+.++++.++++|+.. |++ ++||||||||++ +++++++ +
T Consensus       257 AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~-vl~~~~~~~  334 (414)
T 3f0n_A          257 CIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYTFDAGPNAV-IFTLEDTVA  334 (414)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEECCSSSCEE-EEEEHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEEECCCCCEE-EEEecccHH
Confidence            99999999999999999999999999999999999999999999999998543 776 999999999999 6665544 7


Q ss_pred             HHHHHHHHHhhh
Q 019218          326 FVLSILSASARE  337 (344)
Q Consensus       326 ~~~~~l~~~~~~  337 (344)
                      ++.+.|+..|..
T Consensus       335 ~v~~~l~~~f~~  346 (414)
T 3f0n_A          335 EFVAAVRHSFPP  346 (414)
T ss_dssp             HHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCC
Confidence            788898877764
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 1e-81
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 2e-40
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 4e-04
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  244 bits (623), Expect = 1e-81
 Identities = 98/191 (51%), Positives = 127/191 (66%), Gaps = 4/191 (2%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V   +   P NIA +KYWGKRD  L LP N SISVTL  D L T T+ A +P F++D +W
Sbjct: 1   VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNG+  S+   R QNCL+++R    ++E  +  +        +  LHI S NNFPTAAGL
Sbjct: 61  LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLP----TLSQWKLHIVSENNFPTAAGL 116

Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
           ASSAAGFA LV ++AKL  L ++ S++S IAR+GSGSACRSLFGG+V W +GK  +G DS
Sbjct: 117 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 176

Query: 187 LAVQLVDEEHW 197
           +AVQ+ D   W
Sbjct: 177 MAVQIADSSDW 187
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.94
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 99.9
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.77
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.71
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.6
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.57
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.5
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.43
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.33
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.28
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.2
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 98.35
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 98.29
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 98.12
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 98.09
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 98.01
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 97.95
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.24
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-42  Score=297.21  Aligned_cols=188  Identities=52%  Similarity=0.877  Sum_probs=157.3

Q ss_pred             eeEEEEEecceeEeeeecccccCCCCCCCCCeeEEEeCCCCceeEEEEEEcCCCCcceEEecCcccCCCcchHHHHHHHH
Q 019218            7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI   86 (344)
Q Consensus         7 ~~~~~~~a~~nial~ky~Gk~d~~~~~P~~dsiglal~~~~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~~~~~~~~   86 (344)
                      |.+++++||+||||||||||+|+.+|+|.++||+++|++.+++|+|+|+.+++.+.+++++||++......++.++++.+
T Consensus         1 ~~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~~~~~l   80 (188)
T d1fi4a1           1 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDL   80 (188)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHH
T ss_pred             CeEEEEEccCcEEEEEeccccCcccCCCCCCeEEEEecCCCcEEEEEEEeCCCCcccceeECCeecccchHHHHHHHHHH
Confidence            46899999999999999999999999999999999998778899999998876667889999997665566777777766


Q ss_pred             HHHccccccccccccccccccccccEEEEEeeCCCCcccccchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 019218           87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR  166 (344)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~~~GLGSSaA~~vA~i~Al~~l~~~~ls~~el~~lA~~~~Gs~a~  166 (344)
                      ++.....+....+.    +.+...+++|+++|++|+++||+|||++.+|++.|++++++++++.++++.+||+|+||+|+
T Consensus        81 ~~~~~~~~~~~~~~----p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAcR  156 (188)
T d1fi4a1          81 RQLRKEMESKDASL----PTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR  156 (188)
T ss_dssp             HHHHHHHHTTCTTS----CCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHhcccccC----cccccceEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccchhh
Confidence            65422110000000    11224579999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCEEEEecccCCCCCCceEEEcCCCCCCC
Q 019218          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN  198 (344)
Q Consensus       167 s~~GG~v~~~~~~~~~~~~~~~~~l~~~~~~~  198 (344)
                      |+|||+|+|..+...++.+++++++.++.|||
T Consensus       157 Si~Gg~v~W~~g~~~dg~d~~a~~~~~~~hWp  188 (188)
T d1fi4a1         157 SLFGGYVAWEMGKAEDGHDSMAVQIADSSDWP  188 (188)
T ss_dssp             GGSSSEEEEECCSCTTCTTCEEEEEECGGGST
T ss_pred             hhcCCeeEeccCCCCCCCceeEEECCCccCCC
Confidence            99999999987766667789999987666786
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure