Citrus Sinensis ID: 019254
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 344 | ||||||
| 255572411 | 352 | conserved hypothetical protein [Ricinus | 0.991 | 0.968 | 0.782 | 1e-146 | |
| 224132444 | 317 | predicted protein [Populus trichocarpa] | 0.904 | 0.981 | 0.852 | 1e-145 | |
| 359474957 | 344 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.973 | 0.760 | 1e-143 | |
| 449444419 | 350 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.902 | 0.787 | 1e-141 | |
| 224102787 | 299 | predicted protein [Populus trichocarpa] | 0.869 | 1.0 | 0.839 | 1e-139 | |
| 356574785 | 342 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.976 | 0.756 | 1e-135 | |
| 18398352 | 363 | protein exordium like 5 [Arabidopsis tha | 0.924 | 0.876 | 0.734 | 1e-135 | |
| 21594010 | 365 | unknown [Arabidopsis thaliana] | 0.924 | 0.871 | 0.731 | 1e-134 | |
| 297836448 | 334 | phosphate-responsive 1 family protein [A | 0.924 | 0.952 | 0.725 | 1e-133 | |
| 356535337 | 350 | PREDICTED: uncharacterized protein LOC10 | 0.898 | 0.882 | 0.791 | 1e-132 |
| >gi|255572411|ref|XP_002527143.1| conserved hypothetical protein [Ricinus communis] gi|223533503|gb|EEF35245.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/350 (78%), Positives = 301/350 (86%), Gaps = 9/350 (2%)
Query: 3 PPALHFLIFAALLLLSKTRAAADSSQTEYTLT--------NPKLPPPNTLSTSKKYEGSS 54
PP + +L S T A ++ + T NPKLPP TLSTSKK+EGSS
Sbjct: 4 PPHFFLSLLGFFMLFSNTYVYASTTSSPQIQTLNTKPEYINPKLPP-RTLSTSKKFEGSS 62
Query: 55 DLVNLRYHMGPVLSSSPINIYLVWYGRWPNYQKLLIKDFILSISPAAAAAKPSVSDWWRT 114
DLV LRYHMGPVLSS+PINIYL+WYGRW N QKLLIKDFI SISP A AAKPSVS+WW+T
Sbjct: 63 DLVQLRYHMGPVLSSTPINIYLIWYGRWTNSQKLLIKDFINSISPTATAAKPSVSEWWQT 122
Query: 115 VSLYTDQTGANVSRTVLIAGEHSDHLYSHGKSLTRLSVQQVIGTAVESAPFPVDHKNGIF 174
VSLYTDQTGANVSR+VLIAGE++D YSHG LTRLS+QQVI TAV+SAPFPVDHKNGI+
Sbjct: 123 VSLYTDQTGANVSRSVLIAGEYTDASYSHGNHLTRLSIQQVIATAVKSAPFPVDHKNGIY 182
Query: 175 LILTADDVTMQDYCRAVCGFHYFTFPSMVGYTMPYAWIGNSAKQCPEVCSYPFAVPGYMA 234
LILTA DVT+QD+CRAVCGFHYFTFPSMVGYT+PYAW+GNS KQCPEVC+YPFA+PGYM
Sbjct: 183 LILTAQDVTVQDFCRAVCGFHYFTFPSMVGYTLPYAWVGNSGKQCPEVCAYPFAIPGYMG 242
Query: 235 GGGPAALKPPNGDVGVDGMISVIAHELAELSTNPLVNAWYAGEDPTAPTEIGDLCEGLYG 294
GGGP LKPPN DVGVDGMISVI HELAELS+NPLVNAWYAGEDPTAPTEIGDLCEGLYG
Sbjct: 243 GGGPGTLKPPNRDVGVDGMISVIGHELAELSSNPLVNAWYAGEDPTAPTEIGDLCEGLYG 302
Query: 295 TGGGGGYIGQVMRDNKGRTFNMNGRRGRRFMVQWVWSPVLKACAGPNALD 344
TGGGGGYIGQVMRD +GRTFNMNGRRGR+F+VQW+WSPVLKACAGPNALD
Sbjct: 303 TGGGGGYIGQVMRDRQGRTFNMNGRRGRKFLVQWIWSPVLKACAGPNALD 352
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132444|ref|XP_002328273.1| predicted protein [Populus trichocarpa] gi|222837788|gb|EEE76153.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359474957|ref|XP_003631558.1| PREDICTED: uncharacterized protein LOC100853859 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449444419|ref|XP_004139972.1| PREDICTED: uncharacterized protein LOC101212308 [Cucumis sativus] gi|449475700|ref|XP_004154527.1| PREDICTED: uncharacterized LOC101212308 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224102787|ref|XP_002312800.1| predicted protein [Populus trichocarpa] gi|222849208|gb|EEE86755.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356574785|ref|XP_003555525.1| PREDICTED: uncharacterized protein LOC100786500 [Glycine max] | Back alignment and taxonomy information |
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| >gi|18398352|ref|NP_565409.1| protein exordium like 5 [Arabidopsis thaliana] gi|4584346|gb|AAD25141.1| expressed protein [Arabidopsis thaliana] gi|16604330|gb|AAL24171.1| At2g17230/T23A1.9 [Arabidopsis thaliana] gi|19699196|gb|AAL90964.1| At2g17230/T23A1.9 [Arabidopsis thaliana] gi|330251507|gb|AEC06601.1| protein exordium like 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21594010|gb|AAM65928.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297836448|ref|XP_002886106.1| phosphate-responsive 1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297331946|gb|EFH62365.1| phosphate-responsive 1 family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356535337|ref|XP_003536203.1| PREDICTED: uncharacterized protein LOC100782566 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 344 | ||||||
| TAIR|locus:2059652 | 363 | EXL5 "AT2G17230" [Arabidopsis | 0.860 | 0.815 | 0.703 | 2.2e-121 | |
| TAIR|locus:2153087 | 337 | EXL3 "AT5G51550" [Arabidopsis | 0.848 | 0.866 | 0.605 | 5e-99 | |
| TAIR|locus:2063399 | 323 | EXL7 "AT2G35150" [Arabidopsis | 0.857 | 0.913 | 0.544 | 1.1e-92 | |
| TAIR|locus:2203314 | 309 | PHI-1 "AT1G35140" [Arabidopsis | 0.796 | 0.886 | 0.313 | 5.7e-36 | |
| TAIR|locus:2138753 | 314 | EXO "AT4G08950" [Arabidopsis t | 0.779 | 0.853 | 0.335 | 6.5e-35 | |
| TAIR|locus:2173428 | 305 | EXL2 "AT5G64260" [Arabidopsis | 0.764 | 0.862 | 0.333 | 2.8e-34 | |
| TAIR|locus:2184792 | 278 | EXL4 "AT5G09440" [Arabidopsis | 0.529 | 0.654 | 0.370 | 4.6e-25 | |
| TAIR|locus:2075482 | 332 | EXL6 "AT3G02970" [Arabidopsis | 0.761 | 0.789 | 0.232 | 8.6e-13 |
| TAIR|locus:2059652 EXL5 "AT2G17230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 209/297 (70%), Positives = 250/297 (84%)
Query: 48 KKYEGSSDLVNLRYHMGPVLSSSPINIYLVWYGRWPNYQKLLIKDFILSISPXXXXXKPS 107
KK+EGSS+LV+LRYHMGPVLSSSPINIY++WYG+W K LI+DF+ SIS PS
Sbjct: 68 KKFEGSSNLVHLRYHMGPVLSSSPINIYVIWYGQWSRPHKSLIRDFLNSISDAKAPS-PS 126
Query: 108 VSDWWRTVSLYTDQTGANVSRTVLIAGEHSDHLYSHGKSLTRLSVQQVIGTAVESAPFPV 167
VS+WWRT SLYTDQTG+NVSR+VLIAGE+SD YSHG+ LTRL++Q+VI +A SA FPV
Sbjct: 127 VSEWWRTASLYTDQTGSNVSRSVLIAGEYSDSKYSHGQHLTRLTIQEVIASAARSASFPV 186
Query: 168 DHKNGIFLILTADDVTMQDYCRAVCGFHYFTFPSMVGYTMPYAWIGNSAKQCPEVCSYPF 227
DHKNG++L+LT+ DVTMQD+CRAVCGFHYFTFPSMVGYTMPYAW+G S KQCPEVC+YPF
Sbjct: 187 DHKNGMYLVLTSHDVTMQDFCRAVCGFHYFTFPSMVGYTMPYAWVGQSGKQCPEVCAYPF 246
Query: 228 AVPGYMAGGGPAALKPPNGDVGVDGMISVIAHELAELSTNPLVNAWYAGEDPTAPTEIGD 287
A+PGYM GGP L+PPNG+ GVDGM+SVI HELAE+ +NPL+NAWYAGEDPTAPTEIGD
Sbjct: 247 ALPGYMGHGGPGELRPPNGETGVDGMVSVIGHELAEVVSNPLINAWYAGEDPTAPTEIGD 306
Query: 288 LCEXXXXXXXXXXXXXQVMRDNKGRTFNMNGRRGRRFMVQWVWSPVLKACAGPNALD 344
LCE QVMRD +G+TFNMNG+ GR+F+VQW+W+P LKAC+GPN++D
Sbjct: 307 LCEGLYGSGGGGGYIGQVMRDREGKTFNMNGKGGRKFLVQWIWNPNLKACSGPNSVD 363
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| TAIR|locus:2153087 EXL3 "AT5G51550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2063399 EXL7 "AT2G35150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2203314 PHI-1 "AT1G35140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2138753 EXO "AT4G08950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173428 EXL2 "AT5G64260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2184792 EXL4 "AT5G09440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2075482 EXL6 "AT3G02970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 344 | |||
| pfam04674 | 273 | pfam04674, Phi_1, Phosphate-induced protein 1 cons | 1e-145 |
| >gnl|CDD|218205 pfam04674, Phi_1, Phosphate-induced protein 1 conserved region | Back alignment and domain information |
|---|
Score = 411 bits (1059), Expect = e-145
Identities = 133/284 (46%), Positives = 182/284 (64%), Gaps = 12/284 (4%)
Query: 59 LRYHMGPVLSSSPINIYLVWYGRWPNYQKLLIKDFILSISPAAAAAKPSVSDWWRTVSLY 118
L YHMG VLS I++ L+WYG++ Q+ +I+DF+LS+S + A PSV+ WW+TV LY
Sbjct: 1 LTYHMGAVLSG-NISVNLIWYGKFTPAQRAIIRDFLLSLSSPSPAPSPSVAAWWKTVELY 59
Query: 119 TDQTGANVSRTVLIAGEHSDHLYSHGKSLTRLSVQQVIGTAVESAPFPVDHKNGIFLILT 178
DQTGAN+S ++++ G+ D YS GKSLTRL +Q + A H+ G++L+LT
Sbjct: 60 YDQTGANISASLVLGGQVLDESYSLGKSLTRLQIQSLAAKAGT-------HRGGVYLVLT 112
Query: 179 ADDVTMQDYCRAVCGFHYFTFPSMVGYTMPYAWIGNSAKQCPEVCSYPFAVPGYMAGGGP 238
+ DVT++ +C + CGFH TFPS+VGY YAW+GNSA QCP C++PF P Y P
Sbjct: 113 SPDVTVEGFCMSRCGFHGSTFPSVVGYRFAYAWVGNSATQCPGQCAWPFHQPVYGPQAPP 172
Query: 239 AALKPPNGDVGVDGMISVIAHELAELSTNPLVNAWYAGEDPTAPTEIGDLCEGLYGTGGG 298
L PNGDVGVDGM+ +AH LA TNP N +Y G D TAP E C G+YG+G
Sbjct: 173 --LVAPNGDVGVDGMVINLAHLLAGTVTNPFGNGYYQG-DATAPLEAASACPGVYGSGAY 229
Query: 299 GGYIGQVMRDNK-GRTFNMNGRRGRRFMVQWVWSPVLKACAGPN 341
GY GQ++ D G ++N NG GR++++ +W PV AC+
Sbjct: 230 PGYAGQLLVDAATGASYNANGVNGRKYLLPALWDPVTSACSTLV 273
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Family of conserved plant proteins. Conserved region identified in a phosphate-induced protein of unknown function. Length = 273 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 344 | |||
| PF04674 | 273 | Phi_1: Phosphate-induced protein 1 conserved regio | 100.0 |
| >PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-128 Score=913.96 Aligned_cols=271 Identities=51% Similarity=0.972 Sum_probs=262.3
Q ss_pred eeecCCccccCCCceEeEEEeecCCchhHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhhcccCCcceeeEEEceEEec
Q 019254 59 LRYHMGPVLSSSPINIYLVWYGRWPNYQKLLIKDFILSISPAAAAAKPSVSDWWRTVSLYTDQTGANVSRTVLIAGEHSD 138 (344)
Q Consensus 59 L~YH~GplLtg~~i~V~lIwYG~ftp~QksiI~DFl~Sls~~~~~~~PSVs~WW~t~~~Y~~~~g~~v~~~v~lg~qv~D 138 (344)
|+|||||||+| +|+|||||||+|+|+||+||+|||+||++++++++|||++||+|+++|+++++++++.+|+|++|+.|
T Consensus 1 L~YH~GplLtg-~i~V~lIWYG~ftp~QkaiI~DFl~SLs~~~~~~~PSVa~WW~t~~~Y~~~~~~~~~~~v~l~~qv~D 79 (273)
T PF04674_consen 1 LTYHGGPLLTG-NINVYLIWYGRFTPAQKAIIRDFLRSLSSSAPAPSPSVAQWWKTTEKYYDQAGANVSGRVVLGGQVSD 79 (273)
T ss_pred CCCCCCceeec-CeeEEEEEeeCCCHHHHHHHHHHHHhcCCCCCCCCCChhhhhhhHHhhcccccccccceEEEeeEEec
Confidence 79999999999 99999999999999999999999999999876789999999999999999999988899999999999
Q ss_pred CCCCCCCCCChhhHHHHHHHhhhcCCCCCCCCCceEEEeccCCccccccccccccccccCCCCCCCccccEEEecCCCCC
Q 019254 139 HLYSHGKSLTRLSVQQVIGTAVESAPFPVDHKNGIFLILTADDVTMQDYCRAVCGFHYFTFPSMVGYTMPYAWIGNSAKQ 218 (344)
Q Consensus 139 ~~ySlGksLt~~~i~~lv~~ai~~~~lP~~~~~gvylVLTa~DV~v~gFC~s~CG~H~~~~~s~~~~~~~YawVGNs~~q 218 (344)
++|||||+|+++||++||++++. ++|+|||||||+||+||||||++||+|++++++.++.+++|+|||||++|
T Consensus 80 ~~ySlGksL~~~~i~~lv~~~~~-------~~~gvylVLTa~DV~v~gFC~~~CG~H~~~~~~~~~~~~~YawVGns~~q 152 (273)
T PF04674_consen 80 ENYSLGKSLSRSQIQQLVAKAIP-------DPNGVYLVLTAADVAVEGFCMSRCGFHGSTFPSSVGKRLPYAWVGNSETQ 152 (273)
T ss_pred CCCCCCcccCHHHHHHHHHhcCC-------CCCceEEEEecccceecccccccccCCcCCcccccccceeEEEecCccCC
Confidence 99999999999999999999852 45999999999999999999999999999988877889999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCCCCccCCCCCCccchhhHHHHHHHHHhhhcCccccccccCCCCCCCccccccCCCcccCCCC
Q 019254 219 CPEVCSYPFAVPGYMAGGGPAALKPPNGDVGVDGMISVIAHELAELSTNPLVNAWYAGEDPTAPTEIGDLCEGLYGTGGG 298 (344)
Q Consensus 219 CPg~CAwPF~~P~ygpq~~p~~L~~PNgDvGvDGMvi~iA~~LAgavTNPf~ngwyqG~~~~aplEaadaC~giyG~Gay 298 (344)
|||+||||||||+||||++| |++||||||||||||||||||||++||||+|||||| |++||+||+|+|+||||+|||
T Consensus 153 CPg~CAwPf~~p~ygp~~~~--l~~PNgDvGvDGMvi~iA~~LA~~~TNP~~~g~yqg-~~~aplEaa~aC~giyG~Gay 229 (273)
T PF04674_consen 153 CPGQCAWPFHQPIYGPQGPP--LVPPNGDVGVDGMVINIAHELAGAVTNPFGNGYYQG-DATAPLEAADACAGIYGSGAY 229 (273)
T ss_pred CCCCCCCCCcccccCCCCCC--ccCCCCCcchhhHHHHHHHHHHHhhcCccccccccC-CCCCccchhhhccccccCCCC
Confidence 99999999999999999999 999999999999999999999999999999999998 489999999999999999999
Q ss_pred CCCccceeec-CCCcccccccCCCceeeeeccccCCCCCccCC
Q 019254 299 GGYIGQVMRD-NKGRTFNMNGRRGRRFMVQWVWSPVLKACAGP 340 (344)
Q Consensus 299 pGY~G~llvD-~~GASyNa~G~nGRkfLlpa~WdP~t~~C~~p 340 (344)
|||+|+|++| .+|||||++|+|||||||||||||+|++|+|+
T Consensus 230 pgy~G~l~vD~~tGaSyN~~G~~gRkfLlpa~wdP~t~~C~t~ 272 (273)
T PF04674_consen 230 PGYPGQLLVDPATGASYNANGVNGRKFLLPALWDPETSSCSTL 272 (273)
T ss_pred CCCCcceeecCCCCceeeccccCCceEEeecccCCCcCccccc
Confidence 9999999999 55999999999999999999999999999987
|
A conserved region in these proteins was identified in a phosphate-induced protein of unknown function []. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 344 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 7e-04
Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 67/246 (27%)
Query: 7 HFLIFAALLLLSKTRAAADS----SQTEYTLTNPK--LPPPNTLSTSKKYEGSSDLVNLR 60
F + +LL ++ + D + T +L + L P S KY ++ R
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDCR 314
Query: 61 YHMGP--VLSSSPINIYLVW------YGRWPNYQKL-------LIKDFI----------- 94
P VL+++P + ++ W N++ + +I+ +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 95 ---LSISPAAAAAKPSV-SDWWRTVSLYTDQTGAN--VSRTVLIAGEHSDHLYS-HGKSL 147
LS+ P +A + S W V N + L+ + + S L
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYL 433
Query: 148 TRLSVQQVIGTAVESAPFPVDHKNGIFLILTADDVTMQDYCRAVCGFHYFTFPSMVGYTM 207
L V+ A+ H++ I+ ++ + + P + Y
Sbjct: 434 -ELKVKLENEYAL--------HRS----IVDHYNIP-KTFD-----SDDLIPPYLDQYF- 473
Query: 208 PYAWIG 213
Y+ IG
Sbjct: 474 -YSHIG 478
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00