Citrus Sinensis ID: 019258
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NFH3 | 380 | Nucleoporin Nup43 OS=Homo | yes | no | 0.548 | 0.494 | 0.276 | 7e-09 | |
| P59235 | 380 | Nucleoporin Nup43 OS=Mus | yes | no | 0.440 | 0.397 | 0.307 | 3e-08 | |
| Q54Z22 | 417 | Nuclear pore complex prot | yes | no | 0.469 | 0.386 | 0.276 | 7e-06 |
| >sp|Q8NFH3|NUP43_HUMAN Nucleoporin Nup43 OS=Homo sapiens GN=NUP43 PE=1 SV=1 | Back alignment and function desciption |
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Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 40/228 (17%)
Query: 82 QSLVAASTLSGSLHVLSSAMQVLLSVDEN---SGFHVGP---------ISGVDLTGSECV 129
+ +VAAS+ L LSV++ + +H GP +GV E V
Sbjct: 86 ERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCNNPEIV 145
Query: 130 SVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAG 189
+VGEDGR+NL E R D + V + E +T L+ WD R+ G
Sbjct: 146 TVGEDGRINLFRA-DHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQG 204
Query: 190 SG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248
+ +L G+ +H VD HP+++H GG G + WD+R Q ++ +S
Sbjct: 205 NEPSQILSLTGD-------RVPLHCVDRHPNQQHVVATGGQDGMLSIWDVR--QGTMPVS 255
Query: 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296
+ EA E+WEV + S CSEDG L
Sbjct: 256 LLKAHEA--------EMWEVHF---------HPSNPEHLFTCSEDGSL 286
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Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|P59235|NUP43_MOUSE Nucleoporin Nup43 OS=Mus musculus GN=Nup43 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 72/179 (40%), Gaps = 28/179 (15%)
Query: 119 SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGY 178
+G+ E V+VGEDGR+NL V E R D + V + E VT
Sbjct: 135 TGIVCDNPEIVTVGEDGRINLFRV-DHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIG 193
Query: 179 GLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237
L+ WD R+ GS +L G+ +H VD HP ++H GG G + WD
Sbjct: 194 QLKIWDFRQQGSEPCQILSLTGD-------RVPLHCVDRHPDQQHVVATGGQDGMLSIWD 246
Query: 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296
+R GT E+E+WEV H SN CSEDG L
Sbjct: 247 VR----------QGTMPVSLLKAHEAEMWEV----HFHPSNPDH-----LFTCSEDGSL 286
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Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q54Z22|NUP43_DICDI Nuclear pore complex protein nup43 OS=Dictyostelium discoideum GN=nup43 PE=3 SV=1 | Back alignment and function description |
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Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 129 VSVGEDGRVNLVSV--IGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGG-FGYGLQWWDL 185
V+VG DG +NL+S+ + R DG + N VK + + +T G G +++WD+
Sbjct: 206 VTVGNDGVMNLLSIENLIPIYTNRYIDG---LSVNVVKSITSNQIITSGELGRYIKFWDI 262
Query: 186 RRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245
R + S PV K I S+ IH +H AG S G V +D+R
Sbjct: 263 R-SNSSQPVKTIK-------TQCPRIFSLAIHKDEQHIIAAGSSDGQVNLFDIR------ 308
Query: 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305
+ + TH+ S VWE+ + S S CSEDG + ++
Sbjct: 309 --NDYSIDQNKTHN---SNVWELSF---------SKSNPNQLYSCSEDGFIYQYSYNKDN 354
Query: 306 F---ELLAEPCAI-NSFDI 320
++ P I N+FDI
Sbjct: 355 LGGGGMMTLPNQINNTFDI 373
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Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| 224091841 | 360 | predicted protein [Populus trichocarpa] | 0.982 | 0.936 | 0.622 | 1e-119 | |
| 225445772 | 357 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.927 | 0.632 | 1e-114 | |
| 297798886 | 362 | WD-40 repeat protein family [Arabidopsis | 0.962 | 0.911 | 0.596 | 1e-112 | |
| 255574970 | 354 | conserved hypothetical protein [Ricinus | 0.959 | 0.929 | 0.640 | 1e-112 | |
| 18417678 | 361 | transducin/WD40 domain-containing protei | 0.953 | 0.905 | 0.593 | 1e-110 | |
| 21554881 | 358 | unknown [Arabidopsis thaliana] | 0.953 | 0.913 | 0.593 | 1e-110 | |
| 449453944 | 350 | PREDICTED: nucleoporin Nup43-like [Cucum | 0.976 | 0.957 | 0.589 | 1e-104 | |
| 356498785 | 346 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.945 | 0.599 | 1e-102 | |
| 356562545 | 347 | PREDICTED: nucleoporin Nup43-like [Glyci | 0.953 | 0.942 | 0.594 | 6e-98 | |
| 357479953 | 351 | Nucleoporin Nup43 [Medicago truncatula] | 0.973 | 0.951 | 0.567 | 3e-97 |
| >gi|224091841|ref|XP_002309368.1| predicted protein [Populus trichocarpa] gi|222855344|gb|EEE92891.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/366 (62%), Positives = 274/366 (74%), Gaps = 29/366 (7%)
Query: 1 MAITGVRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA 60
MA T + PP++HR PQ K+IDA+RWLP SP K + +++D+D +PSLE HS+
Sbjct: 1 MARTNLTEPPKIHRIPQPKFIDAIRWLPSPSPFRKSFITSLFDSDFHTPSLEIHSLDPSK 60
Query: 61 SLT-PHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSG------- 112
+LT P WTPP+RISSL ++ SL AAST GSLH+ + ++ + ++ SG
Sbjct: 61 TLTTPLLSWTPPSRISSLKST-PSLFAASTFLGSLHIFKTPEEMSVLGNDMSGLGSETSV 119
Query: 113 -----------FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159
FHVG I GVDL GSECVSVGEDGRVNLV GG F+RV+DGNGLV
Sbjct: 120 MEPVVSVVGREFHVGSIGGVDLMEGGSECVSVGEDGRVNLVVEKGG--FRRVFDGNGLVS 177
Query: 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219
++ VKWASP+EFVTGG G+GLQWWDLR+ G+ V QFKG++ +G SG+IHS+DIHPS
Sbjct: 178 YSAVKWASPSEFVTGGCGFGLQWWDLRQPGAA--VAQFKGSW-DRGTTSGIIHSIDIHPS 234
Query: 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS--S 277
RKHTCLAGGSSGTVFAWDLR QQ+ I+LS +G+ + +T LSESEVWEVQYD +TKS S
Sbjct: 235 RKHTCLAGGSSGTVFAWDLRRQQEPIILSSIGSSDTMTQPLSESEVWEVQYDYYTKSLNS 294
Query: 278 NISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESI 337
NISSSR+LPAM CSEDGILAV+EQGEEP ELLAEPCAINSFDID QNPSDVICSLEWESI
Sbjct: 295 NISSSRILPAMICSEDGILAVIEQGEEPTELLAEPCAINSFDIDRQNPSDVICSLEWESI 354
Query: 338 AIVSRP 343
I+SRP
Sbjct: 355 VILSRP 360
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445772|ref|XP_002273237.1| PREDICTED: uncharacterized protein LOC100251872 [Vitis vinifera] gi|297743697|emb|CBI36580.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/359 (63%), Positives = 267/359 (74%), Gaps = 28/359 (7%)
Query: 7 RTPP----QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL 62
+ PP Q+HR PQS+YIDAVR+LP S L + AVLA++DT + SPSL+ HS LP S
Sbjct: 5 KAPPSHSLQIHRLPQSQYIDAVRFLPAFSGLDRFAVLALFDTHSSSPSLQIHS--LPKST 62
Query: 63 TPHSQWTPPTRISSLST-------SHQSLVAASTLSGSLHVL----SSAMQVLLSVDENS 111
P +SS + +H+ L+AAST SGSLH+L +++Q SV E S
Sbjct: 63 PPSLNLQSSLSLSSRVSSLSLSLSAHKPLIAASTFSGSLHILLLDFDASVQSEFSVPEKS 122
Query: 112 GFHVGPISGVDL--TGSECVSVGEDGRVNLVSVIGGGE--FKRVYDGNGLVGFNCVKWAS 167
HVG IS VDL +G ECVSVGEDGRVNLV+ G ++RV+D +GLV + KWAS
Sbjct: 123 -LHVGAISCVDLQESGVECVSVGEDGRVNLVAFGDGSRLSYRRVWDSDGLVSYTAAKWAS 181
Query: 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227
PTEF TGGFG+GLQWWDLR+ G GPV QFKGN+ +Q SG++HS+DIHPSRKHTCLAG
Sbjct: 182 PTEFATGGFGFGLQWWDLRKPG--GPVSQFKGNW-AQRTTSGIVHSIDIHPSRKHTCLAG 238
Query: 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN---ISSSRV 284
GS GTVFAWDLRWQQQ I+LSGVGT E THS ESEVWEV+YD + ++SN +SSSR+
Sbjct: 239 GSLGTVFAWDLRWQQQPIILSGVGTSEVATHSPCESEVWEVKYDPYMRTSNFGNMSSSRI 298
Query: 285 LPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
LPAM CSEDGILAVVEQGEEP ELLAEPCAINSFDID QNPSDVICSLEWESIAI+SRP
Sbjct: 299 LPAMLCSEDGILAVVEQGEEPIELLAEPCAINSFDIDRQNPSDVICSLEWESIAILSRP 357
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798886|ref|XP_002867327.1| WD-40 repeat protein family [Arabidopsis lyrata subsp. lyrata] gi|297313163|gb|EFH43586.1| WD-40 repeat protein family [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/357 (59%), Positives = 253/357 (70%), Gaps = 27/357 (7%)
Query: 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSI--------SLPASL 62
QVHR PQSKY+D VRWLP S L++ A YD D DS S+E S+ + +
Sbjct: 9 QVHRIPQSKYVDGVRWLPQASALNRFFATAFYDPDCDSSSIEIQSLDPNPKGNQNTNPLI 68
Query: 63 TPHSQWTPPTRISSLST--------SHQSLVAASTLSGSLHVL-----SSAMQVLLSVDE 109
S WT P+R+SSL S + +V+A+T SGSLHVL A + V E
Sbjct: 69 ESLSSWTTPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMVDLVEGAAIEEVYVAE 128
Query: 110 NSGFHVGPISGVD-LTGSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWA 166
FHVG + GVD G ECV+VGEDGRVN+V ++ G +++V+DGNGLV + VKWA
Sbjct: 129 GERFHVGRVEGVDWREGGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVKWA 188
Query: 167 SPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226
SPTEFVTGG+G+GLQ WD R++G Q KGN+ QGK S ++HS+DIHPSRKHTC+A
Sbjct: 189 SPTEFVTGGYGFGLQLWDQRKSGEAAS--QLKGNW-FQGKTSAIVHSIDIHPSRKHTCIA 245
Query: 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286
GGSSGTVFAWDLRW QQ IVLSGVG E + + LSESEVWEVQYD +TKS+NISSSR+LP
Sbjct: 246 GGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKSNNISSSRILP 305
Query: 287 AMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
M CSEDGIL V+EQGEEP ELLAEPCAINSFDID QNP DVICSLEWESIA+ SRP
Sbjct: 306 VMTCSEDGILGVIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSRP 362
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574970|ref|XP_002528391.1| conserved hypothetical protein [Ricinus communis] gi|223532179|gb|EEF33984.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/353 (64%), Positives = 269/353 (76%), Gaps = 24/353 (6%)
Query: 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLT----PHS 66
++ R PQ KY+D++RWLP LSP + ++A +D+D D+PSLETHS+S +S T P S
Sbjct: 6 EIQRLPQFKYVDSIRWLPSLSPFQRSIIIAFFDSDTDAPSLETHSLSSTSSETLTLTPLS 65
Query: 67 QWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSG------FHVGPISG 120
WTPP+RISSL ++ SL+AA+T SGSLH+ +A + L S FHVGPI G
Sbjct: 66 SWTPPSRISSLKST-SSLIAAATFSGSLHIFPTAQESTLEPPRMSELLGGREFHVGPIRG 124
Query: 121 VDLT---GSECVSVGEDGRVNLVSVIGGGE-----FKRVYDGNGLVGFNCVKWASPTEFV 172
VD+ GSE VSVGEDGRVNLV V+G G+ +RV+DGNGLV ++ VKWAS TEFV
Sbjct: 125 VDVMEGGGSEVVSVGEDGRVNLVRVLGEGKTGINNCQRVFDGNGLVSYSAVKWASNTEFV 184
Query: 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232
TGG G+GLQWWDLRR S V QFKG + QG +SG+IHS+DIH SRK+TCLAGGSSGT
Sbjct: 185 TGGCGFGLQWWDLRRPNSA--VAQFKGIW-DQGMSSGIIHSIDIHQSRKYTCLAGGSSGT 241
Query: 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR--VLPAMFC 290
VFAWDLRW+ Q IVLSGV + THSLSES+VWEVQYDC+TKS + +SS +LPAM C
Sbjct: 242 VFAWDLRWKDQPIVLSGVELNDTATHSLSESDVWEVQYDCYTKSLSSNSSSSCILPAMIC 301
Query: 291 SEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
SEDGILAV+EQGEEP ELLAEPCAINSFDID QNPSDVICSLEWESIAI+SRP
Sbjct: 302 SEDGILAVIEQGEEPIELLAEPCAINSFDIDCQNPSDVICSLEWESIAIISRP 354
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417678|ref|NP_567858.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|90093296|gb|ABD85161.1| At4g30840 [Arabidopsis thaliana] gi|332660417|gb|AEE85817.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/359 (59%), Positives = 255/359 (71%), Gaps = 32/359 (8%)
Query: 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH----- 65
QVHR PQSKY+D VRWLP S L++ A YD D DS S+E S+ P H
Sbjct: 9 QVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLD-PNPRGNHNTNPL 67
Query: 66 ----SQWTPPTRISSLST--------SHQSLVAASTLSGSLHVL------SSAMQVLLSV 107
S WT P+R+SSL S + +V+A+T SGSLHVL +A++ +
Sbjct: 68 IESLSSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEFYAA 127
Query: 108 DENSGFHVGPISGVD-LTGSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVK 164
E FHVG + GVD G ECV+VGEDGRVN+V ++ G +++V+DGNGLV + VK
Sbjct: 128 -EGERFHVGRVEGVDWREGGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVK 186
Query: 165 WASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224
WASPTEFVTGG+G+GLQ WD R++G V Q KGN+ QGK S ++HS+DIHPSRKHTC
Sbjct: 187 WASPTEFVTGGYGFGLQLWDQRKSGEA--VSQLKGNW-FQGKTSAIVHSIDIHPSRKHTC 243
Query: 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRV 284
+AGGSSGTVFAWDLRW QQ IVLSGVG E + + LSESEVWEVQYD +TK SN+SSSR+
Sbjct: 244 IAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTK-SNVSSSRI 302
Query: 285 LPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
LP M CSEDGIL ++EQGEEP ELLAEPCAINSFDID QNP DVICSLEWESIA+ SRP
Sbjct: 303 LPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSRP 361
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21554881|gb|AAM63718.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/359 (59%), Positives = 256/359 (71%), Gaps = 32/359 (8%)
Query: 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH----- 65
QVHR PQSKY+D VRWLP S L++ A YD D DS S+E S+ P H
Sbjct: 6 QVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLD-PNPRGNHNTNPL 64
Query: 66 ----SQWTPPTRISSLST--------SHQSLVAASTLSGSLHVL------SSAMQVLLSV 107
S WT P+R+SSL S + +V+A+T SGSLHVL +A++ + +
Sbjct: 65 IESLSSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEVYAA 124
Query: 108 DENSGFHVGPISGVD-LTGSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVK 164
E FHVG + GVD G ECV+VGEDGRVN+V ++ G +++V+DGNGLV + VK
Sbjct: 125 -EGERFHVGRVEGVDWREGGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVK 183
Query: 165 WASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224
WASPTEFVTGG+G+GLQ WD R++G V Q KGN+ QGK S ++HS+DIHPSRKHTC
Sbjct: 184 WASPTEFVTGGYGFGLQLWDQRKSGEA--VSQLKGNW-FQGKTSAIVHSIDIHPSRKHTC 240
Query: 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRV 284
+AGGSSGTVFAWDLRW QQ IVLSGVG E + + LSESEVWEVQYD +TK SN+SSSR+
Sbjct: 241 IAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTK-SNVSSSRI 299
Query: 285 LPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
LP M CSEDGIL ++EQGEEP ELLAEPCAINSFDID QNP DVICSLEWESIA+ SRP
Sbjct: 300 LPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSRP 358
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453944|ref|XP_004144716.1| PREDICTED: nucleoporin Nup43-like [Cucumis sativus] gi|449511548|ref|XP_004163987.1| PREDICTED: nucleoporin Nup43-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/358 (58%), Positives = 261/358 (72%), Gaps = 23/358 (6%)
Query: 1 MAITGVRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-P 59
MAI + PQ+HRFPQ KY+D VRWLPPLS S+ AV+A++D+D+DS S+E HS++ P
Sbjct: 1 MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNP 60
Query: 60 ASLTPHSQWTPPTRISSLSTSH---QSLVAASTLSGSLHVLS-----SAMQVLLSVDENS 111
+ PHS W P+R+SSL TS LV AST +GSLHVLS +++ LSV E
Sbjct: 61 LDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 112 GFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWASP 168
H GPIS VD+ G EC++V EDGRV+LVSV G ++R++D NGLV +N VKWASP
Sbjct: 121 -LHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASP 179
Query: 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228
TEFVTGG G+ LQWWD R+ G G V QFK N+ ASG++H +DIHPSRKHTCLAGG
Sbjct: 180 TEFVTGGCGFSLQWWDQRKPG--GAVSQFKANW-----ASGIVHCIDIHPSRKHTCLAGG 232
Query: 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI---SSSRVL 285
S GTVFAWDLR QQQ I+LSG+ + S ESEVWEV YD + KS N+ SS+++L
Sbjct: 233 SFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQIL 292
Query: 286 PAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
PAM CSEDGIL +EQG+EP ELLAEPCAIN FDI+ Q+PS+VIC+LEWES+AI+SRP
Sbjct: 293 PAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP 350
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498785|ref|XP_003518229.1| PREDICTED: uncharacterized protein LOC100795073 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/342 (59%), Positives = 248/342 (72%), Gaps = 15/342 (4%)
Query: 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQWTP 70
+ RFPQ +Y+DAVRWLP S + AVLA++D D+D+ S+E H+++ P SL PHS W+
Sbjct: 8 IQRFPQHRYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHALNQNPFSLEPHSSWSS 67
Query: 71 PTRISSLSTSH---QSLVAASTLSGSLHVLSSAMQVLLSVDENS----GFHVGPISGVDL 123
P+R+SSL SH + L+ AST SGSLH L S + E S H P S VDL
Sbjct: 68 PSRVSSLKPSHFLQKPLIVASTSSGSLHFLFSDSSDASLLSEVSLPEGALHSLPASCVDL 127
Query: 124 T--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGL 180
G ECVSVGEDG+VNLV + ++R++D GLV + V+WASP EF TGGFG+GL
Sbjct: 128 MDGGVECVSVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVRWASPMEFATGGFGFGL 187
Query: 181 QWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240
QWWD R+ G GPV QFKGN+ + SG++HS+DIHPSRKHTCLAGGS GTVFAWDLRW
Sbjct: 188 QWWDQRKPG--GPVSQFKGNWDKK-LTSGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRW 244
Query: 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300
QQQ I+LSG G S+SESEVWEVQYD K SN SS+R+LP+M CSEDGIL V+E
Sbjct: 245 QQQPIILSGAGAANTAVQSISESEVWEVQYDRCIK-SNTSSTRILPSMICSEDGILGVIE 303
Query: 301 QGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342
QGEEP ELLAEPCAINSFDID NPSDVICSLEWE++AI++R
Sbjct: 304 QGEEPIELLAEPCAINSFDIDRHNPSDVICSLEWEAVAILTR 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562545|ref|XP_003549530.1| PREDICTED: nucleoporin Nup43-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/345 (59%), Positives = 246/345 (71%), Gaps = 18/345 (5%)
Query: 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS-LPASLTPHSQWTP 70
+ RFPQ KY+DAVRWLP S + AVLA++D D+D+ S+E HS++ P SL PHS W+
Sbjct: 6 IQRFPQHKYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHSLNPNPLSLEPHSSWSS 65
Query: 71 PTRISSLSTSH---QSLVAASTLSGSLHVLSSAMQVLLSVDENS----GFHVGPISGVDL 123
P+R+SSL SH + L+ AST SGSLH L S V E S H P S VDL
Sbjct: 66 PSRVSSLKASHFLQKPLIVASTSSGSLHFLFSDSSVATLESEVSIPEGALHSVPASCVDL 125
Query: 124 T--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGL 180
G ECV+VGEDG+VNLV + ++R++D GLV + V WASP EF TGG+G+GL
Sbjct: 126 LDGGVECVTVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVSWASPMEFATGGYGFGL 185
Query: 181 QWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240
WWD R+ G GPV QFKGN+ + SG++HS+DIHPSRKHTCLAGGS GTVFAWDLRW
Sbjct: 186 HWWDQRKPG--GPVSQFKGNWDKK-LTSGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRW 242
Query: 241 QQQSIVLSGVGTG---EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297
QQQ I+LSG G G S+SESEVWEVQYD K N SS+R+LP+M CSEDGIL
Sbjct: 243 QQQPIILSGAGAGAGGNTAVQSISESEVWEVQYDRCIKP-NTSSTRILPSMICSEDGILG 301
Query: 298 VVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342
V+EQGEEP ELLAEPCAINSFDID NPSDVICSLEWE++AI++R
Sbjct: 302 VIEQGEEPIELLAEPCAINSFDIDRHNPSDVICSLEWEAVAILTR 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479953|ref|XP_003610262.1| Nucleoporin Nup43 [Medicago truncatula] gi|355511317|gb|AES92459.1| Nucleoporin Nup43 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 249/358 (69%), Gaps = 24/358 (6%)
Query: 1 MAITGVRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS-LP 59
MA+T ++HRFPQ KYIDAVRWLP LS ++ AVLA D D++ S+E HS P
Sbjct: 1 MAVTA---NSEIHRFPQYKYIDAVRWLPVLSAFNRFAVLATSDFDSNLSSIEIHSFKPNP 57
Query: 60 ASLTPHSQWTPPTRISSLSTSH---QSLVAASTLSGSLHVL-----SSAMQVLLSVDENS 111
S S WT P+ ISS+ +S +S++A+ST SGSLH L + + +SV EN
Sbjct: 58 LSFEFQSSWTSPSPISSIKSSQFLQKSIIASSTSSGSLHFLFADSTDARLVSEVSVPENE 117
Query: 112 GFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWASP 168
H+ +DL G ECV+VG+DGR+NLV+V ++R++D GLV + VKWASP
Sbjct: 118 -LHLEGKCCIDLMDGGVECVTVGDDGRINLVTVGDSNLNYRRLFDSGGLVSYTSVKWASP 176
Query: 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228
EF TGG+G+GL WWD R+ G GPV QFKGN+ + SG++HS+DIHPSRKHTCLA G
Sbjct: 177 VEFATGGYGFGLHWWDQRKPG--GPVSQFKGNW-DKNLNSGIVHSIDIHPSRKHTCLAAG 233
Query: 229 SSGTVFAWDLRWQQQSIVLSGVGTGE----AVTHSLSESEVWEVQYDCHTKSSNISSSRV 284
S GTV AWDLR QQQ I+LSG G G+ S+SESEVWEVQYD KS N SS+R+
Sbjct: 234 SLGTVLAWDLRMQQQPIILSGTGAGDGAGNTAVQSISESEVWEVQYDRCIKS-NTSSTRI 292
Query: 285 LPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342
LPAM CSEDGIL V+EQGEEP ELLAEPCAINSFDID NP DVICSLEWES+AI++R
Sbjct: 293 LPAMICSEDGILGVIEQGEEPIELLAEPCAINSFDIDRHNPLDVICSLEWESVAILTR 350
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| TAIR|locus:2126689 | 361 | AT4G30840 "AT4G30840" [Arabido | 0.795 | 0.756 | 0.630 | 4.8e-94 | |
| MGI|MGI:1917162 | 380 | Nup43 "nucleoporin 43" [Mus mu | 0.492 | 0.444 | 0.303 | 1.5e-07 | |
| RGD|1596513 | 378 | Nup43 "nucleoporin 43" [Rattus | 0.492 | 0.447 | 0.303 | 2e-07 | |
| ZFIN|ZDB-GENE-040426-2533 | 372 | nup43 "nucleoporin 43" [Danio | 0.504 | 0.465 | 0.308 | 6.9e-07 | |
| FB|FBgn0038609 | 358 | Nup43 "Nucleoporin 43kD" [Dros | 0.349 | 0.335 | 0.284 | 8.1e-07 | |
| UNIPROTKB|F1P643 | 380 | NUP43 "Uncharacterized protein | 0.393 | 0.355 | 0.294 | 9.4e-07 | |
| UNIPROTKB|Q8NFH3 | 380 | NUP43 "Nucleoporin Nup43" [Hom | 0.492 | 0.444 | 0.289 | 9.4e-07 | |
| UNIPROTKB|F1S7T5 | 380 | NUP43 "Uncharacterized protein | 0.393 | 0.355 | 0.288 | 1.2e-06 | |
| UNIPROTKB|A3KMW1 | 380 | NUP43 "NUP43 protein" [Bos tau | 0.396 | 0.357 | 0.296 | 1.2e-05 | |
| UNIPROTKB|E1C370 | 374 | NUP43 "Uncharacterized protein | 0.390 | 0.358 | 0.307 | 1.6e-05 |
| TAIR|locus:2126689 AT4G30840 "AT4G30840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 186/295 (63%), Positives = 223/295 (75%)
Query: 66 SQWTPPTRISSLST--------SHQSLVAASTLSGSLHVL------SSAMQVLLSVDENS 111
S WT P+R+SSL S + +V+A+T SGSLHVL +A++ + E
Sbjct: 72 SSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEFYAA-EGE 130
Query: 112 GFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG-G-EFKRVYDGNGLVGFNCVKWASP 168
FHVG + GVD G ECV+VGEDGRVN+V ++ G G +++V+DGNGLV + VKWASP
Sbjct: 131 RFHVGRVEGVDWREGGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVKWASP 190
Query: 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228
TEFVTGG+G+GLQ WD R++G V Q KGN+ QGK S ++HS+DIHPSRKHTC+AGG
Sbjct: 191 TEFVTGGYGFGLQLWDQRKSGEA--VSQLKGNW-FQGKTSAIVHSIDIHPSRKHTCIAGG 247
Query: 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288
SSGTVFAWDLRW QQ IVLSGVG E + + LSESEVWEVQYD +TKS N+SSSR+LP M
Sbjct: 248 SSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKS-NVSSSRILPVM 306
Query: 289 FCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343
CSEDGIL ++EQGEEP ELLAEPCAINSFDID QNP DVICSLEWESIA+ SRP
Sbjct: 307 TCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSRP 361
|
|
| MGI|MGI:1917162 Nup43 "nucleoporin 43" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 62/204 (30%), Positives = 88/204 (43%)
Query: 82 QSLVAASTLSGSLHV-LSSAMQVLLSVDEN---SGFHVGP----ISGVDLTGSEC----- 128
+ +VAAS+ +G + V L LSV++ + +H GP S TG C
Sbjct: 86 ERIVAASS-TGCVTVFLHHPNNQTLSVNQQWPAAHYHTGPSSPSYSSAPCTGIVCDNPEI 144
Query: 129 VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GGFGYGLQWWDLRR 187
V+VGEDGR+NL V E R D + V + E VT G L+ WD R+
Sbjct: 145 VTVGEDGRINLFRV-DHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQ-LKIWDFRQ 202
Query: 188 AGSGG-PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246
GS +L G+ +H VD HP ++H GG G + WD+R +
Sbjct: 203 QGSEPCQILSLTGD-------RVPLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVS 255
Query: 247 LSGVGTGEAVTHSLSESEVWEVQY 270
L H E+E+WEV +
Sbjct: 256 L-------LKAH---EAEMWEVHF 269
|
|
| RGD|1596513 Nup43 "nucleoporin 43" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 62/204 (30%), Positives = 87/204 (42%)
Query: 82 QSLVAASTLSGSLHV-LSSAMQVLLSVDEN---SGFHVGP----ISGVDLTGSEC----- 128
+ +VAAS+ +G + V L LSV + + +H GP S TG C
Sbjct: 86 ERIVAASS-TGCVTVFLHHPNNQTLSVSQQWPTAHYHTGPGSPSYSSAPCTGIVCDNPEI 144
Query: 129 VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GGFGYGLQWWDLRR 187
V+VGEDGR+NL V E R D + V + E VT G L+ WD R+
Sbjct: 145 VTVGEDGRINLFRV-DHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQ-LKIWDFRQ 202
Query: 188 AGSGG-PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246
GS +L G+ +H VD HP ++H GG G + WD+R +
Sbjct: 203 QGSEPCQILSLTGD-------RVPLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVS 255
Query: 247 LSGVGTGEAVTHSLSESEVWEVQY 270
L H E+E+WEV +
Sbjct: 256 L-------LKAH---EAEMWEVHF 269
|
|
| ZFIN|ZDB-GENE-040426-2533 nup43 "nucleoporin 43" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 63/204 (30%), Positives = 93/204 (45%)
Query: 84 LVAASTLSGSLHV--LSSAMQVL-LS-VDENS---GFHVGPISGVDLTGSECVSVGEDGR 136
LV+AS+ SG++ + L S Q L L+ V E + + P + + E VSVGEDGR
Sbjct: 88 LVSASS-SGAVSIFKLQSDCQALSLAHVWERAHRCSCNNAPCTAIVCRSPEIVSVGEDGR 146
Query: 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GGFGYGLQWWDLRR-AGSGGPV 194
V L E RV + + V + TE +T G L+ WD R+ + S +
Sbjct: 147 VILYKA-DQAEVTRVIENADSSTIHAVTFLRTTEVLTVNSIGQ-LKMWDFRQQSDSPAQI 204
Query: 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254
L G+ +H VD HP+++H GG G + WD+R L+ E
Sbjct: 205 LSLTGD-------RMPLHCVDKHPNQQHIVATGGQDGMLCIWDVRQGNTPFSLT-----E 252
Query: 255 AVTHSLSESEVWEVQYDCHTKSSN 278
A HS +E+WEV + H + N
Sbjct: 253 A--HS---AEMWEVHF--HPSNPN 269
|
|
| FB|FBgn0038609 Nup43 "Nucleoporin 43kD" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 35/123 (28%), Positives = 59/123 (47%)
Query: 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF 176
P + + + G++ + GEDG V++VSV + KR + + + F+ + + S E VT
Sbjct: 131 PCTDLSVYGTDIATAGEDGCVSIVSVENVRQVKRQIEADSMALFS-ICYISQQELVTANR 189
Query: 177 GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236
++ D R A P F SQ S + S+ HP ++H L G G++ W
Sbjct: 190 MGVIRMLDARVATEAQPKTTFM--VASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVW 247
Query: 237 DLR 239
D+R
Sbjct: 248 DMR 250
|
|
| UNIPROTKB|F1P643 NUP43 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 46/156 (29%), Positives = 67/156 (42%)
Query: 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GG 175
P +GV E V+VGEDGR+NL E R D + V + E +T
Sbjct: 133 PCTGVVCNSPEIVTVGEDGRINLFRA-DHKEAVRTIDNADSSTLHAVTFLRTPEILTVNS 191
Query: 176 FGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234
G L+ WD R+ G+ +L G+ +H VD HP+++H GG G +
Sbjct: 192 IGQ-LKIWDFRKQGNEPSQILSLTGD-------RVPLHCVDRHPNQQHVVATGGQDGMLS 243
Query: 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270
WD+R + L H E+E+WEV +
Sbjct: 244 IWDVRQGTMPVSL-------LKAH---EAEMWEVHF 269
|
|
| UNIPROTKB|Q8NFH3 NUP43 "Nucleoporin Nup43" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 59/204 (28%), Positives = 88/204 (43%)
Query: 82 QSLVAASTLSGSLHV-LSSAMQVLLSVDEN---SGFHVGP----ISGVDLTGSEC----- 128
+ +VAAS+ +G + V L LSV++ + +H GP S TG C
Sbjct: 86 ERIVAASS-TGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCNNPEI 144
Query: 129 VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GGFGYGLQWWDLRR 187
V+VGEDGR+NL E R D + V + E +T G L+ WD R+
Sbjct: 145 VTVGEDGRINLFRA-DHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQ-LKIWDFRQ 202
Query: 188 AGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246
G+ +L G+ +H VD HP+++H GG G + WD+R +
Sbjct: 203 QGNEPSQILSLTGD-------RVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 255
Query: 247 LSGVGTGEAVTHSLSESEVWEVQY 270
L H E+E+WEV +
Sbjct: 256 L-------LKAH---EAEMWEVHF 269
|
|
| UNIPROTKB|F1S7T5 NUP43 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 45/156 (28%), Positives = 70/156 (44%)
Query: 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GG 175
P +GV E V+VGEDGR+NL K + + + + V + E +T
Sbjct: 133 PCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIDNADSST-LHAVTFLRTPEILTVNS 191
Query: 176 FGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234
G L+ WD R+ G+ +L G+ +A +H VD HP+++H GG G +
Sbjct: 192 IGQ-LKIWDFRQQGNEPSQILSLTGD-----RAP--LHCVDRHPNQQHVVATGGQDGMLS 243
Query: 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270
WD+R + L H E+E+WEV +
Sbjct: 244 IWDVRQGTMPVSL-------LKAH---EAEMWEVHF 269
|
|
| UNIPROTKB|A3KMW1 NUP43 "NUP43 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 46/155 (29%), Positives = 66/155 (42%)
Query: 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GG 175
P +GV E V+VGEDGR+NL E R D + V + E +T
Sbjct: 133 PCTGVVCNNPEIVTVGEDGRINLFRA-DHKEAVRTIDNADSSTLHAVTFLRTPEILTVNS 191
Query: 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235
G L+ WD R+ + P Q G + +H VD HP+++H GG G +
Sbjct: 192 IGQ-LKIWDFRQQRNE-PT-QILSLTGDRVP----LHCVDRHPNQQHVVATGGQDGMLSI 244
Query: 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270
WD+R + L H E+E+WEV +
Sbjct: 245 WDVRQGTMPVSL-------LKAH---EAEMWEVHF 269
|
|
| UNIPROTKB|E1C370 NUP43 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 47/153 (30%), Positives = 69/153 (45%)
Query: 119 SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT-GGFG 177
+GV E V+VGEDGR+NL + R D + V + TE +T G
Sbjct: 134 TGVICNNPEIVTVGEDGRINLYRA-DQKDAVRTIDNADSSTLHAVTFLRTTEILTVNSIG 192
Query: 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237
L+ WD R+ + P Q F G + H VD HP+++H GG G + WD
Sbjct: 193 Q-LKIWDFRQQRNE-PA-QI---FSLTGDRVPL-HCVDRHPNQQHIVATGGQDGMLSIWD 245
Query: 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270
+R Q ++ +S + EA E+WEV +
Sbjct: 246 IR--QGTMPVSLLNAHEA--------EMWEVHF 268
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 343 343 0.00096 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 622 (66 KB)
Total size of DFA: 262 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.14u 0.13s 30.27t Elapsed: 00:00:01
Total cpu time: 30.14u 0.13s 30.27t Elapsed: 00:00:01
Start: Sat May 11 06:16:15 2013 End: Sat May 11 06:16:16 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 343 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (98), Expect = 3e-04
Identities = 46/247 (18%), Positives = 82/247 (33%), Gaps = 11/247 (4%)
Query: 55 SISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH 114
+ L+ + T P + S L+A+ + G++ + + LL SG
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHS 242
Query: 115 VGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173
+S GS S DG + L + R G+ V ++ +
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLAS 301
Query: 174 GGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233
G ++ WDL G +L G G + S+ P G GT+
Sbjct: 302 GSSDGTVRLWDLE----TGKLLSSLTLKGH----EGPVSSLSFSPDGSLLVSGGSDDGTI 353
Query: 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293
WDLR + L G +V+ S V D + ++S+ +L +
Sbjct: 354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413
Query: 294 GILAVVE 300
+ ++
Sbjct: 414 RVTSLDF 420
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 49/227 (21%), Positives = 76/227 (33%), Gaps = 43/227 (18%)
Query: 114 HVGPISGVDLTGSE--CVSVGEDGRVNLVSVIGGGEFKRVYDG-NGLVGFNCVKWASPTE 170
H +S V + S D + + V G + G V N V ++
Sbjct: 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWV--NSVAFSPDGT 148
Query: 171 FVTGGFGYG-LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229
FV G ++ WDLR +G V G+ +G ++SV P + L+ S
Sbjct: 149 FVASSSQDGTIKLWDLR---TGKCVATLTGH-------TGEVNSVAFSPDGEK-LLSSSS 197
Query: 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289
GT+ WDL + L G E+ V V + + +S
Sbjct: 198 DGTIKLWDLSTGKCLGTLRG-----------HENGVNSVAFS---PDGYLLAS------- 236
Query: 290 CSEDGILAV--VEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW 334
SEDG + V + GE L ++ S P + S
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK--RLASGSA 281
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.98 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.98 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.89 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.86 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.86 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.81 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.73 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.68 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.58 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.55 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.53 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.52 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.5 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.5 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.48 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.42 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.38 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.38 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.37 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.35 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.35 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.33 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.31 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.26 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.25 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.23 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.21 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.18 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.14 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.08 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.07 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.07 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.02 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.0 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.98 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.97 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.89 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.81 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.78 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.78 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.78 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.74 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.74 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.74 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.74 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.74 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.72 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.71 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.7 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.7 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.59 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.58 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.58 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.56 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.54 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.4 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.34 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.31 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.3 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.25 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.25 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.19 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.19 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.17 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.14 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.12 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.11 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.1 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.06 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.02 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.93 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.89 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.84 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.83 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.72 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.69 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.56 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.55 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.43 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.41 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.4 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.33 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.31 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.13 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.03 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.98 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.91 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.89 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.85 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.84 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.81 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.81 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.78 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.75 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.74 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.55 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.45 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.38 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.27 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.88 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.69 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.64 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.52 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.46 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.38 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.23 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.23 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.14 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.05 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.7 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.51 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.4 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.34 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.26 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.05 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.02 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.97 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.94 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.59 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.24 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.12 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 92.94 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.88 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.68 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.32 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.22 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.14 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.33 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.17 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 89.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.65 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.41 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 89.4 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 89.25 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.4 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.17 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 88.14 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.11 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 87.23 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 87.02 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.5 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.13 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 86.05 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 85.15 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.1 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 84.75 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 84.72 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.34 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.26 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 84.11 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 83.38 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 83.35 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 83.04 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 82.06 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.48 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 80.77 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 80.74 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 80.25 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 80.23 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=282.62 Aligned_cols=278 Identities=18% Similarity=0.195 Sum_probs=237.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.-..+|+...+++ ++..||||||++. +++|+.+.-+ ......+|.+.|.++.|+ ++..+++++.||
T Consensus 173 gd~rPis~~~fS~----ds~~laT~swsG~-----~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 173 GDTRPISGCSFSR----DSKHLATGSWSGL-----VKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred cCCCcceeeEeec----CCCeEEEeecCCc-----eeEeecCCcc--eeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence 4457899999999 9999999999987 4599996542 224456899999999999 255899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
++++|++....++.-. .+|...|..+.|+ |++++|++.|.+-++||++++.. ....++|.. .|.+++|++ +.
T Consensus 242 tvklw~~~~e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~-~v~~iaf~~DGS 316 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSK-GVFSIAFQPDGS 316 (459)
T ss_pred ceeeeccCCCcchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhccccc-ccceeEecCCCc
Confidence 9999999865555433 3699999999999 99999999999999999999853 444467776 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.++|||.|..-++||+|+ +.++.-+.+|. .+|.+|+|+|+|.+ +|+|+.|++++|||+|.... ...+
T Consensus 317 L~~tGGlD~~~RvWDlRt---gr~im~L~gH~-------k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r~~-ly~i- 383 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRT---GRCIMFLAGHI-------KEILSVAFSPNGYH-LATGSSDNTCKVWDLRMRSE-LYTI- 383 (459)
T ss_pred eeeccCccchhheeeccc---CcEEEEecccc-------cceeeEeECCCceE-EeecCCCCcEEEeeeccccc-ceec-
Confidence 999999999999999999 89888888876 88999999999865 68999999999999998544 4545
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeeecCCCCCe
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
.+|..-|..|.|.|+... +|+|||.|+++++|... .....+..+...|.|+|+++ +++.
T Consensus 384 ---------pAH~nlVS~Vk~~p~~g~---------fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~ 444 (459)
T KOG0272|consen 384 ---------PAHSNLVSQVKYSPQEGY---------FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQA 444 (459)
T ss_pred ---------ccccchhhheEecccCCe---------EEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCce
Confidence 689999999999996666 89999999999999864 44556666778999999999 6799
Q ss_pred eEEccCCceEEEEe
Q 019258 328 VICSLEWESIAIVS 341 (343)
Q Consensus 328 l~~~~~~~~i~~~~ 341 (343)
+++++-|.+|.+|+
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=262.17 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=238.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|-+++|+| ++..|||||.|.+ +++||+..+... ..--.|..-|.|++|+ ++..|++|+.||.|
T Consensus 113 GH~e~Vl~~~fsp----~g~~l~tGsGD~T-----vR~WD~~TeTp~--~t~KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSP----TGSRLVTGSGDTT-----VRLWDLDTETPL--FTCKGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCCCcEEEEEecC----CCceEEecCCCce-----EEeeccCCCCcc--eeecCCccEEEEEEECCCcchhhccccCCeE
Confidence 5889999999999 8999999999975 679999654433 3334688899999999 99999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-------CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-------GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
++||-..++.+ .+...+|+..|++++|. ...+++++.||.|++||+..+. +.....+|.. +|+|++|-.
T Consensus 182 ~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~-~VTCvrwGG 257 (480)
T KOG0271|consen 182 RLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTA-SVTCVRWGG 257 (480)
T ss_pred EEecCCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCcc-ceEEEEEcC
Confidence 99997755433 33345799999999997 4689999999999999999884 6666677777 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc-----------CCCCe--------------
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH-----------PSRKH-------------- 222 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----------p~~~~-------------- 222 (343)
.+++.+++.|++|++|+... +.....+++|. .+|+.++++ |.+..
T Consensus 258 ~gliySgS~DrtIkvw~a~d---G~~~r~lkGHa-------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 258 EGLIYSGSQDRTIKVWRALD---GKLCRELKGHA-------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred CceEEecCCCceEEEEEccc---hhHHHhhcccc-------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 99999999999999999988 78888888876 778888776 33322
Q ss_pred ----------EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 223 ----------TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 223 ----------~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.+++|++|.++++|+-....+|+..+ .+|...|+.+.|+|++. +++++|-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm----------tgHq~lVn~V~fSPd~r----------~IASaSF 387 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM----------TGHQALVNHVSFSPDGR----------YIASASF 387 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhh----------hchhhheeeEEECCCcc----------EEEEeec
Confidence 47899999999999988878888887 89999999999999988 8999999
Q ss_pred CCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 293 DGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 293 dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|..|++|+-.. -...+..+..+|+.++|+. +...|++|+.|-++.+|.
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEE
Confidence 99999998753 3455556778999999998 458999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=261.79 Aligned_cols=279 Identities=15% Similarity=0.191 Sum_probs=227.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc------CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS------HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~------~~~~l~~~ 88 (343)
.|...|-+|+|+| ++..+|+|+.|++ |.+|+-+... ... ..-.|...|++++|. +.++|+++
T Consensus 155 gH~~WVlcvawsP----Dgk~iASG~~dg~-----I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 155 GHKNWVLCVAWSP----DGKKIASGSKDGS-----IRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred CCccEEEEEEECC----CcchhhccccCCe-----EEEecCCCCCcccc--cccCcccceeEEeecccccCCCccceecc
Confidence 5788999999999 9999999999976 6799975432 222 224688899999997 45689999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC-
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA- 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~- 166 (343)
+.||.|+|||+.....+... .+|+.+|+|+.|- ..+++++|.|++|++|+...++ +.+.+.+|.. .|+.++.+
T Consensus 224 skDg~vrIWd~~~~~~~~~l---sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHah-wvN~lalsT 298 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTL---SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAH-WVNHLALST 298 (480)
T ss_pred cCCCCEEEEEccCceEEEEe---ccCccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccch-heeeeeccc
Confidence 99999999999855544443 3799999999999 7899999999999999999885 4455555654 67777665
Q ss_pred ----------C-C-------------------------CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccC
Q 019258 167 ----------S-P-------------------------TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 167 ----------~-~-------------------------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (343)
+ + ..+++|++|.++.+|+... ..+|+....+|. ..
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~--~kkpi~rmtgHq-------~l 369 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK--SKKPITRMTGHQ-------AL 369 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc--cccchhhhhchh-------hh
Confidence 2 1 2499999999999999877 456777777775 77
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
|+.+.|+|++. ++|+++-|..|++||.++++....+ .+|-+.|++++|+.|.. .|++|
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasf-----------RGHv~~VYqvawsaDsR----------LlVS~ 427 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASF-----------RGHVAAVYQVAWSADSR----------LLVSG 427 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhh-----------hhccceeEEEEeccCcc----------EEEEc
Confidence 99999999987 4689999999999999997665554 47999999999998877 89999
Q ss_pred ecCCeEEEEecCCC-c-ccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 291 SEDGILAVVEQGEE-P-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 291 s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|.|.+|++|+-..+ . ..+-.+..-|.++||+| +|+.|++|+.|..+.+|+.
T Consensus 428 SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~~ 480 (480)
T KOG0271|consen 428 SKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWRH 480 (480)
T ss_pred CCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeecC
Confidence 99999999996533 2 33334556799999999 7899999999988888863
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=263.17 Aligned_cols=276 Identities=15% Similarity=0.228 Sum_probs=228.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|+.|+|.| +++.|+||+.-++ +.+|+...=.. ......|..+|.++.|+ ++..+++|..+|.|++|+
T Consensus 98 ~V~~v~WtP----eGRRLltgs~SGE-----FtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 98 PVNVVRWTP----EGRRLLTGSQSGE-----FTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ceeeEEEcC----CCceeEeeccccc-----EEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 599999999 8999999998876 56998833111 12234688999999999 999999999999999998
Q ss_pred ccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~ 175 (343)
.+.+. +.. ....|...|++++|+ +..|++||+||+|++||....+ ..+.+.+|+. .|.+++|+| ..+++++|
T Consensus 167 pnmnn-Vk~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 167 PNMNN-VKI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSVDWHPTKGLIASGS 241 (464)
T ss_pred cchhh-hHH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-CcceeccCCccceeEEcc
Confidence 87322 211 222456899999999 8899999999999999999875 4555567776 799999999 88999999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|+.|++||.|+ +.++.++..|. ..|..+.|+|++ +.|++++.|..++++|+|.......+
T Consensus 242 kDnlVKlWDprS---g~cl~tlh~HK-------ntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~-------- 302 (464)
T KOG0284|consen 242 KDNLVKLWDPRS---GSCLATLHGHK-------NTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTY-------- 302 (464)
T ss_pred CCceeEeecCCC---cchhhhhhhcc-------ceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHh--------
Confidence 999999999999 89998887765 679999999998 56789999999999999964433333
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCccccccc--ccccceeeecCCCCCeeEEcc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAE--PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+|+..|+++.|+|-... .|.+++.||.|..|... +++...... ...|.|+++|| -|..|.+|+
T Consensus 303 ---r~Hkkdv~~~~WhP~~~~---------lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgs 369 (464)
T KOG0284|consen 303 ---RGHKKDVTSLTWHPLNES---------LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGS 369 (464)
T ss_pred ---hcchhhheeecccccccc---------ceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecC
Confidence 579999999999999887 89999999999999876 444444432 57899999999 778888888
Q ss_pred CCceEEEEeCC
Q 019258 333 EWESIAIVSRP 343 (343)
Q Consensus 333 ~~~~i~~~~~~ 343 (343)
-|..+.+|+|+
T Consensus 370 nd~t~rfw~r~ 380 (464)
T KOG0284|consen 370 NDRTVRFWTRN 380 (464)
T ss_pred CCcceeeeccC
Confidence 88899999984
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=235.09 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=220.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--LTPH-SQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|.+.|..++-.+ ...+.++++|.|.. +-+|++..++. ..++ ...+|...|..+..+ ++++.++++.|
T Consensus 13 gh~d~Vt~la~~~---~~~~~l~sasrDk~-----ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 13 GHTDWVTALAIKI---KNSDILVSASRDKT-----IIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred CCCceEEEEEeec---CCCceEEEcccceE-----EEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 5889999999999 46789999999964 66999965432 2222 234578899999999 99999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
+++++||+..++...... +|...|.+++++ ..++++|+.|.++++|++.... ...+.+..+...|.|+.|+|
T Consensus 85 ~~lrlWDl~~g~~t~~f~---GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV---GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ceEEEEEecCCcEEEEEE---ecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCC
Confidence 999999999765444332 799999999999 7899999999999999998873 44443332133799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
+..+++++.|++|++||+++ .+....+.+|. +.++.++++|+|. ++++|+.||.+.+||++..+....
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~gh~-------~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRN---CQLRTTFIGHS-------GYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred CCcEEEEccCCceEEEEccCC---cchhhcccccc-------ccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEe
Confidence 56899999999999999998 66656677665 8899999999985 678999999999999998776444
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc---------cccc
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE---------PCAI 315 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~---------~~~i 315 (343)
+ .|...|.+++|+|... .|+ +..+-.|++|+.... ..++..+ ....
T Consensus 230 l------------~a~~~v~sl~fspnry----------wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 230 L------------EAFDIVNSLCFSPNRY----------WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred c------------cCCCeEeeEEecCCce----------eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 3 4889999999999764 344 444455999997432 2232222 2335
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEe
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++|++ +|+.|+||..++.|++|.
T Consensus 287 lslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 287 LSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 7889998 789999999999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=234.94 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=230.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|..||.++.|++ +.++++++|.|+. |-+||.-... ....++.+ .-|..++|+ .+++++.|+.|..
T Consensus 53 GH~~Ki~~~~ws~----Dsr~ivSaSqDGk-----lIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 53 GHLNKIYAMDWST----DSRRIVSASQDGK-----LIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK 120 (343)
T ss_pred ccccceeeeEecC----CcCeEEeeccCCe-----EEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCce
Confidence 5888999999999 9999999999974 7799984321 12233444 469999999 8899999999999
Q ss_pred EEEEEccCc--e-eeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 94 LHVLSSAMQ--V-LLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 94 v~v~~~~~~--~-~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
..||++... + ...+.+...+|.+.+.++.|. ...|+++|.|.+..+||+++++ ....+.+|.. .|.++++.|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~g-DV~slsl~p~~ 198 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTG-DVMSLSLSPSD 198 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcc-cEEEEecCCCC
Confidence 999999822 2 234444556899999999998 8999999999999999999995 5666677776 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.+.|++|+-|+..++||+|. +...++|.+|+ +-|++|.|+|+|. -|++|++|+++++||+|..++...+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~---~~c~qtF~ghe-------sDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRS---GQCVQTFEGHE-------SDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred CCeEEecccccceeeeeccC---cceeEeecccc-------cccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeee
Confidence 88999999999999999999 88899999988 7799999999986 4689999999999999997665555
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeeecCCCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDIDPQNP 325 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~~~~~~ 325 (343)
.. ..-..+|++++|+..+. +|++|..|.++.+||.- +..-.|..+...|.++.++| +|
T Consensus 268 s~---------~~~~~gitSv~FS~SGR----------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG 327 (343)
T KOG0286|consen 268 SH---------DSIICGITSVAFSKSGR----------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DG 327 (343)
T ss_pred cc---------CcccCCceeEEEccccc----------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CC
Confidence 41 33456899999999887 78999999999999973 33344555678899999999 55
Q ss_pred CeeEEccCCceEEEEe
Q 019258 326 SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 ~~l~~~~~~~~i~~~~ 341 (343)
--|.+|+=|..++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 5555555556888884
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=234.09 Aligned_cols=285 Identities=16% Similarity=0.166 Sum_probs=229.9
Q ss_pred eeeEEecCCCCCCCCeEEEE--eecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLA--IYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHV 96 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~--s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v 96 (343)
=.+++|+|- ..++|+.+ ..=+-.+.-+|-|.++.+.........+.-+..+.+++|+ .++.+++++.||++++
T Consensus 11 GysvqfSPf---~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 11 GYSVQFSPF---VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred cceeEeccc---ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence 467899993 23333333 2222233446778888654445556667777889999999 7889999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEF 171 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l 171 (343)
||+..... .+...+.|+..|.+++|+ ...++++|.|++||+|+...+. ..+++.+|.. .|+...|+| ++.|
T Consensus 88 ~d~~~~s~--Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~-~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 88 FDLTMPSK--PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNS-CIYQAAFSPHIPNLF 163 (311)
T ss_pred eccCCCCc--chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCcc-EEEEEecCCCCCCeE
Confidence 99763322 122234699999999999 7788999999999999998874 5666777776 899999999 8999
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+++++||+|. +++.+. +..|. ..|.|++|+...++++++|+.|+.|+.||+|+.+.|+..+
T Consensus 164 as~Sgd~~l~lwdvr~--~gk~~~-i~ah~-------~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--- 230 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRS--PGKFMS-IEAHN-------SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--- 230 (311)
T ss_pred EEccCCceEEEEEecC--CCceeE-EEecc-------ceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---
Confidence 9999999999999999 555554 77665 6799999999999999999999999999999999998887
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccc-cccceeeecCCCCCee
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEP-CAINSFDIDPQNPSDV 328 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~-~~i~s~~~~~~~~~~l 328 (343)
.+|.-.|..|+|+|+... .|+|||.|-++++|+.. +...+....+ .-+-.+||++..+.++
T Consensus 231 -------~gh~~AVRkvk~Sph~~~---------lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~v 294 (311)
T KOG0277|consen 231 -------NGHGLAVRKVKFSPHHAS---------LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQV 294 (311)
T ss_pred -------cCCceEEEEEecCcchhh---------HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCcee
Confidence 789999999999999887 89999999999999974 3344555444 4577889988888999
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
++.+=|+.++||+
T Consensus 295 As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 295 ASTGWDELLYVWN 307 (311)
T ss_pred eecccccceeeec
Confidence 9999889999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=247.50 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=236.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC------------CCCCccCCCCCCeeEEEcc-C
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS------------LTPHSQWTPPTRISSLSTS-H 81 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~------------~~~~~~~~~~~~v~~v~~~-~ 81 (343)
.+|...|..-+|+| .....+++|+.|-. .++|++.++.. -.+..+.+.+..|++++|+ +
T Consensus 175 l~~~~~V~~~~WnP---~~~~llasg~~~s~-----ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 175 LRHESEVFICAWNP---LRDGLLASGSGDST-----ARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred ccCCCceEEEecCc---hhhhhhhccCCccc-----eeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence 34788899999999 45568889988743 56999965211 0112334445689999999 9
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+.+|++|+.||.+++|+..... ......|++||.++.|+ |.+|++++.|+++.+||..++ .+.+.+..|.. +
T Consensus 247 G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~-~ 320 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSA-P 320 (524)
T ss_pred CCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccC-C
Confidence 9999999999999999987332 22234699999999999 999999999999999999998 46677677765 4
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 160 v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
-.++.|-....|++.+.|+.|+++-+.. ..|+.++.+|+ ++|.++.|+|.+. +|+++++|++++||.+.
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~---~~P~~t~~GH~-------g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGE---DRPVKTFIGHH-------GEVNALKWNPTGS-LLASCSDDGTLKIWSMG 389 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecC---CCcceeeeccc-------CceEEEEECCCCc-eEEEecCCCeeEeeecC
Confidence 5789999888999999999999999988 78999999877 8899999999985 78999999999999987
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccce
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINS 317 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s 317 (343)
.......+ .+|...|..+.|+|+++.. .+.+.-+.+++++.|+++++|+.... ...++.+..||++
T Consensus 390 ~~~~~~~l-----------~~Hskei~t~~wsp~g~v~-~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 390 QSNSVHDL-----------QAHSKEIYTIKWSPTGPVT-SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred CCcchhhh-----------hhhccceeeEeecCCCCcc-CCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 74443333 5799999999999998843 22233337999999999999997543 4566677889999
Q ss_pred eeecCCCCCeeEEccCCceEEEEeCC
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++++| +|.++++|+-++.+++|+.+
T Consensus 458 vafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 458 VAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EEecC-CCcEEEecCCCCeeEecccc
Confidence 99999 78999999999999999753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=251.05 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=208.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|..+|.++.|+|.. ++..+|||+.|+. +++|+++.... +.....|..+|..++|+ ++.+|++++.|.+
T Consensus 214 ~gH~~~v~~~~fhP~~--~~~~lat~s~Dgt-----vklw~~~~e~~--l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVD--SDLNLATASADGT-----VKLWKLSQETP--LQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred eccccceeeEEEccCC--CccceeeeccCCc-----eeeeccCCCcc--hhhhhcchhhheeeeecCCCceeeecccccc
Confidence 3689999999999932 4778999999986 55999965322 12334688899999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
-++||++...++...+ +|..+|.+++|. |..++|||.|..-++||+++++ ...++.+|.. .|.+++|+| +..
T Consensus 285 WRlWD~~tk~ElL~QE---GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k-~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQE---GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIK-EILSVAFSPNGYH 359 (459)
T ss_pred hhhcccccchhhHhhc---ccccccceeEecCCCceeeccCccchhheeecccCc-EEEEeccccc-ceeeEeECCCceE
Confidence 9999999776665554 699999999999 8999999999999999999995 6666677776 899999999 888
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
++||+.|++++|||+|. ..++.++..|. ..|+.|.|.|....++++++.|+++++|..++. .+...+
T Consensus 360 lATgs~Dnt~kVWDLR~---r~~ly~ipAH~-------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksL-- 426 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRM---RSELYTIPAHS-------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSL-- 426 (459)
T ss_pred EeecCCCCcEEEeeecc---cccceeccccc-------chhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhh--
Confidence 99999999999999999 77788888877 779999999977778899999999999998874 444444
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+|++.|.++..+|++. .++++|.|.++++|.+
T Consensus 427 --------aGHe~kV~s~Dis~d~~----------~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 427 --------AGHEGKVISLDISPDSQ----------AIATSSFDRTIKLWRP 459 (459)
T ss_pred --------cCCccceEEEEeccCCc----------eEEEeccCceeeeccC
Confidence 68999999999999988 7999999999999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=236.10 Aligned_cols=278 Identities=14% Similarity=0.153 Sum_probs=225.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.+..+.|++++|+. ++.+||||++|+. +++|+.+.... ...-.|.++|.+++|. .+++|++++-||+
T Consensus 232 ~~~nkdVT~L~Wn~----~G~~LatG~~~G~-----~riw~~~G~l~---~tl~~HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNN----DGTLLATGSEDGE-----ARIWNKDGNLI---STLGQHKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred CCccCCcceEEecC----CCCeEEEeecCcE-----EEEEecCchhh---hhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence 34557899999999 9999999999986 77999965321 2234689999999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
+.+||...++..+..+ .|..+-.++.|- ...|++++.||.+.++.+.... +...+.+|+. .|.+++|+| +.+|
T Consensus 300 tilwd~~~g~~~q~f~---~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g-~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFE---FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHG-EVNALKWNPTGSLL 374 (524)
T ss_pred EEEEeccCceEEEeee---eccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccC-ceEEEEECCCCceE
Confidence 9999997665544443 477787889998 8999999999999999998774 5555556666 899999999 8999
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC--------eEEEEEecCCcEEEEEccCCce
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK--------HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--------~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+++++|++++||...+ ......+..|. ..|..+.|+|.++ ..+++++.|++|++||+..+..
T Consensus 375 aS~SdD~TlkiWs~~~---~~~~~~l~~Hs-------kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQ---SNSVHDLQAHS-------KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEecCCCeeEeeecCC---Ccchhhhhhhc-------cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999877 55666666665 6688888888754 4678999999999999988544
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDP 322 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~ 322 (343)
... + ..|..+|++|+|+|++. ++++|+-||.|.+|+.+.. ....+...+-|..+.|+-
T Consensus 445 i~~-f----------~kH~~pVysvafS~~g~----------ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 445 IHT-L----------MKHQEPVYSVAFSPNGR----------YLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred eEe-e----------ccCCCceEEEEecCCCc----------EEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcC
Confidence 444 4 57999999999999988 8999999999999997643 444455567799999997
Q ss_pred CCCCeeEEccCCceEEEEe
Q 019258 323 QNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~ 341 (343)
+|++|.....++.+.+.+
T Consensus 504 -~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 -AGDKLGACASDGSVCVLD 521 (524)
T ss_pred -CCCEEEEEecCCCceEEE
Confidence 457776666777877764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=216.56 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=222.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC--CCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW--TPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~--~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|.++|-.++|+| ..+..|+|++.|+. |++|+..+.....|...+ .|...|.+++|+ .+++|+++|.|.
T Consensus 12 gh~~r~W~~awhp---~~g~ilAscg~Dk~-----vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 12 GHKDRVWSVAWHP---GKGVILASCGTDKA-----VRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CCCCcEEEEEecc---CCceEEEeecCCce-----EEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4667899999999 34779999999965 779999754445444333 577899999999 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC--ceEEEEEcCCCccceEEEEeCC-
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG--GEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
++.||.-... ++.......+|...|.+++|+ |.+|++|++|..|-+|.+..+ -.+..+++.|.. -|..+.|+|
T Consensus 84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCC
Confidence 9999987632 232333334799999999999 999999999999999998743 245667777766 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
..+|+++++|++|++|+-..++.=.+..++.++. .-|.+++|+|.|.. ++++++|++|+||-++. .+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-------~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~-----~~ 228 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-------NTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYT-----DL 228 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCcc-------ceEEEEEecCCCce-EEEecCCcceEeeeecc-----Cc
Confidence 8999999999999999876412224566677665 57999999999854 58999999999998663 12
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC----cccccc-----ccccccee
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE----PFELLA-----EPCAINSF 318 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~----~~~~~~-----~~~~i~s~ 318 (343)
. ..|..+++.+.|. +. .++|++.|+.|+++..... ...++. +...||++
T Consensus 229 ~----------~~~sr~~Y~v~W~--~~----------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 229 S----------GMHSRALYDVPWD--NG----------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred c----------hhcccceEeeeec--cc----------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 2 4578899999999 33 6999999999999976432 223332 13579999
Q ss_pred eecCCCCCeeEEccCCceEEEEe
Q 019258 319 DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++|.....|++|+|||.+.+|.
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEE
Confidence 99996578999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=218.55 Aligned_cols=266 Identities=15% Similarity=0.160 Sum_probs=210.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENS 111 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~ 111 (343)
+.-+|||+|||.+ |++|.... ..|..+++|+ +.|+.++...+..++++.....|++||++...+..+...+
T Consensus 9 ~~viLvsA~YDhT-----IRfWqa~t---G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 9 DPVILVSAGYDHT-----IRFWQALT---GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred CceEEEeccCcce-----eeeeehhc---CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe
Confidence 5578999999976 77999954 6778888886 6899999994444444456678999999955443333332
Q ss_pred CccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEcccc
Q 019258 112 GFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRA 188 (343)
Q Consensus 112 ~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~ 188 (343)
+|.+.|+++.|. |...++||+||++++||++.. .+.+.+... + +|+++..+| +..|+++..+|.|++||++.
T Consensus 81 -~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~~~-s-pVn~vvlhpnQteLis~dqsg~irvWDl~~- 155 (311)
T KOG0315|consen 81 -GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQHN-S-PVNTVVLHPNQTELISGDQSGNIRVWDLGE- 155 (311)
T ss_pred -ccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhccCC-C-CcceEEecCCcceEEeecCCCcEEEEEccC-
Confidence 699999999998 999999999999999999996 466666554 3 799999999 88999999999999999988
Q ss_pred CCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-----eeeeeecCCCCcccccCCccc
Q 019258 189 GSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ-----QSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~h~~ 263 (343)
......+..... .+|.++...|+|.. ++++...|.+++|++-... .|+..+ +.|++
T Consensus 156 --~~c~~~liPe~~------~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~----------~ah~~ 216 (311)
T KOG0315|consen 156 --NSCTHELIPEDD------TSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKF----------QAHNG 216 (311)
T ss_pred --CccccccCCCCC------cceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhhe----------ecccc
Confidence 434334333221 67999999999875 5778899999999986533 244444 78999
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccc--cccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLA--EPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
-+....++|++. +|++||.|.++++|+.... ..++.- +...+...+|+. +|.||+.|+.|...++|
T Consensus 217 ~il~C~lSPd~k----------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVK----------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCc----------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeec
Confidence 999999999988 8999999999999998654 223322 245799999998 67999999999999888
Q ss_pred e
Q 019258 341 S 341 (343)
Q Consensus 341 ~ 341 (343)
.
T Consensus 286 ~ 286 (311)
T KOG0315|consen 286 D 286 (311)
T ss_pred c
Confidence 5
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=231.35 Aligned_cols=288 Identities=15% Similarity=0.168 Sum_probs=231.7
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-C---CCe
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-H---QSL 84 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~---~~~ 84 (343)
|..++-+.|++.|++|.-.+ ++++||+||+. +++|+..++.. +...+|.++|.+++|. . ...
T Consensus 96 P~pl~~~~hdDWVSsv~~~~------~~IltgsYDg~-----~riWd~~Gk~~---~~~~Ght~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGAS------KWILTGSYDGT-----SRIWDLKGKSI---KTIVGHTGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred CCccccccchhhhhhhcccC------ceEEEeecCCe-----eEEEecCCceE---EEEecCCcceeeeEEEecCCccce
Confidence 55778888888888887654 68999999986 66999976432 4556899999999998 2 235
Q ss_pred EEEEcCCCcEEEEEccCceee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-----------------
Q 019258 85 VAASTLSGSLHVLSSAMQVLL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG----------------- 144 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~----------------- 144 (343)
|++++.|.++++|..+.++.. .......+|.+.|-+++.. +..+++++.|.+|++|+..+
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999999999854432 2223334899999999987 99999999999999999311
Q ss_pred -------CceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 145 -------GGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 145 -------~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
.+.+...+.+|.. +|.++.|.+...+.+++.|.+|+.||+.. +....++... ..++|++.+
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d~~v~yS~SwDHTIk~WDlet---g~~~~~~~~~--------ksl~~i~~~ 309 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTE-PVSSVVWSDATVIYSVSWDHTIKVWDLET---GGLKSTLTTN--------KSLNCISYS 309 (423)
T ss_pred hhhhcccccCceEEeccccc-ceeeEEEcCCCceEeecccceEEEEEeec---ccceeeeecC--------cceeEeecc
Confidence 0124455677777 89999999988999999999999999999 6776666643 669999999
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|. ..++++|+.|..+++||.|++......+ ...+|.+.|.++.|+|.+.. +|+++|.||+++
T Consensus 310 ~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~--------s~~gH~nwVssvkwsp~~~~---------~~~S~S~D~t~k 371 (423)
T KOG0313|consen 310 PL-SKLLASGSSDRHIRLWDPRTGDGSVVSQ--------SLIGHKNWVSSVKWSPTNEF---------QLVSGSYDNTVK 371 (423)
T ss_pred cc-cceeeecCCCCceeecCCCCCCCceeEE--------eeecchhhhhheecCCCCce---------EEEEEecCCeEE
Confidence 96 4688999999999999999875433222 01579999999999999998 999999999999
Q ss_pred EEecCC---CcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 298 VVEQGE---EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 298 ~~~~~~---~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+||-.. ....+..+...|.+++|+. +..+++|+-|..|++++.
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 999753 3345555677899999995 589999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=241.91 Aligned_cols=276 Identities=13% Similarity=0.165 Sum_probs=229.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.++++|-+|.++| -.++++++-+.++ +.||+...+.. ..++.- .-+|.+.+|. ..+.+++|+.|..
T Consensus 11 ~rSdRVKsVd~HP----tePw~la~LynG~-----V~IWnyetqtm---VksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 11 SRSDRVKSVDFHP----TEPWILAALYNGD-----VQIWNYETQTM---VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred ccCCceeeeecCC----CCceEEEeeecCe-----eEEEeccccee---eeeeeecccchhhheeeeccceEEEecCCce
Confidence 4889999999999 6778999999876 56999965432 334443 3588999998 8999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PT 169 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 169 (343)
|+||++++.+.+...+ +|..-|.++.++ ..+++|+|+|-+|++||.++.-.+.+.+++|.- .|.+++|+| .+
T Consensus 79 IrVfnynt~ekV~~Fe---AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H-yVMqv~fnPkD~n 154 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFE---AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH-YVMQVAFNPKDPN 154 (794)
T ss_pred EEEEecccceeeEEee---ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce-EEEEEEecCCCcc
Confidence 9999999776665443 799999999999 889999999999999999998888899999887 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-CeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-KHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.|++++.|++|++|.+.+ ..+..++++|. ..|+||++-|-+ ...+++|++|.+|++||..+..+...+
T Consensus 155 tFaS~sLDrTVKVWslgs---~~~nfTl~gHe-------kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL- 223 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGS---PHPNFTLEGHE-------KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL- 223 (794)
T ss_pred ceeeeeccccEEEEEcCC---CCCceeeeccc-------cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-
Confidence 999999999999999988 78888999887 669999998765 235679999999999999886555444
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~ 326 (343)
++|..-|..+.|||.-+ .++|||+||++++|+...-. ..+...-..+.++.-.+. +.
T Consensus 224 ----------eGHt~Nvs~v~fhp~lp----------iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~-~~ 282 (794)
T KOG0276|consen 224 ----------EGHTNNVSFVFFHPELP----------IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKG-DG 282 (794)
T ss_pred ----------hcccccceEEEecCCCc----------EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCC-CC
Confidence 67999999999999988 79999999999999975322 233333467888887764 46
Q ss_pred eeEEccCCceEEE
Q 019258 327 DVICSLEWESIAI 339 (343)
Q Consensus 327 ~l~~~~~~~~i~~ 339 (343)
.++.|.|.+.|.+
T Consensus 283 ~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 283 KIAVGFDEGSVTV 295 (794)
T ss_pred eEEEeccCCcEEE
Confidence 7888888877654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=217.68 Aligned_cols=240 Identities=17% Similarity=0.163 Sum_probs=197.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCce-ee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQV-LL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~-~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
-.|++.|..++-. +.+.|++++.|.++.+|++.... .. ...+...+|...|..+..+ ++++++++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 3688999999987 67899999999999999998331 11 2233345799999999988 99999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
+.++ +..+.+.+|.. .|.+++|++ +..+++|+.|++|++|+... .+..++.... +.++|.|+.|+|+.
T Consensus 92 l~~g-~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g----~ck~t~~~~~-----~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 92 LATG-ESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----VCKYTIHEDS-----HREWVSCVRFSPNE 160 (315)
T ss_pred ecCC-cEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecc----cEEEEEecCC-----CcCcEEEEEEcCCC
Confidence 9998 46666777776 799999999 88999999999999999966 4444433221 12889999999985
Q ss_pred -CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 221 -KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 221 -~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
..++++++.|++|++||+++.+....+ .+|.+.++.+.++||+. ..++|+.||.+.+|
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----------~gh~~~v~t~~vSpDGs----------lcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTF-----------IGHSGYVNTVTVSPDGS----------LCASGGKDGEAMLW 219 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhcc-----------ccccccEEEEEECCCCC----------EEecCCCCceEEEE
Confidence 567889999999999999986554444 47999999999999998 79999999999999
Q ss_pred ecCCCc-ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQGEEP-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|..+.. ...+....+|+++.|+|+ .+.+|..-...|.||+
T Consensus 220 dL~~~k~lysl~a~~~v~sl~fspn--rywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 220 DLNEGKNLYSLEAFDIVNSLCFSPN--RYWLCAATATSIKIWD 260 (315)
T ss_pred EccCCceeEeccCCCeEeeEEecCC--ceeEeeccCCceEEEe
Confidence 987543 344455689999999994 8888888888999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=254.97 Aligned_cols=279 Identities=17% Similarity=0.140 Sum_probs=216.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-----CCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-----ASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-----~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
.|...|.+++|+| ++++||||+.|+. |++|++... ....+...+.+...|.+++|+ .+.+|+++
T Consensus 481 ~~~~~V~~i~fs~----dg~~latgg~D~~-----I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 481 NSSNLVCAIGFDR----DGEFFATAGVNKK-----IKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCCcEEEEEECC----CCCEEEEEeCCCE-----EEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEE
Confidence 3778899999999 8899999999975 679997431 111123334456789999998 56889999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+.||.|++||+...+.+... ..|.+.|++++|+ +..|++|+.||+|++||++++. ....+..+. .+.++.|
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~---~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~~--~v~~v~~ 625 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEM---KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTKA--NICCVQF 625 (793)
T ss_pred eCCCeEEEEECCCCeEEEEe---cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecCC--CeEEEEE
Confidence 99999999999865544333 3699999999997 5789999999999999999874 444444443 5899999
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ- 242 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~- 242 (343)
.+ +..+++|+.|+.|++||++. ...++..+.+|. ..|.++.|.+ +. .+++++.|++|++||++...
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~--~~~~~~~~~~h~-------~~V~~v~f~~-~~-~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRN--PKLPLCTMIGHS-------KTVSYVRFVD-SS-TLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCC--CCccceEecCCC-------CCEEEEEEeC-CC-EEEEEECCCEEEEEeCCCCcc
Confidence 65 78899999999999999988 233555666554 7799999974 33 57899999999999998532
Q ss_pred ----eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-c-----------
Q 019258 243 ----QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-F----------- 306 (343)
Q Consensus 243 ----~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~----------- 306 (343)
.+.... .+|...+..+.|+|++. +|++|+.||.|++|+..... .
T Consensus 695 ~~~~~~l~~~----------~gh~~~i~~v~~s~~~~----------~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 695 GINETPLHSF----------MGHTNVKNFVGLSVSDG----------YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred ccCCcceEEE----------cCCCCCeeEEEEcCCCC----------EEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 233333 57889999999999977 89999999999999964321 0
Q ss_pred ---cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 ---ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 ---~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
........|+++.|+| ++..|++|++++.|.+|+
T Consensus 755 ~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILE 791 (793)
T ss_pred cccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEe
Confidence 0011124699999998 679999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=246.10 Aligned_cols=241 Identities=16% Similarity=0.236 Sum_probs=205.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-----------------------------CCCCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-----------------------------ASLTPHS 66 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-----------------------------~~~~~~~ 66 (343)
+..+-++|..+++ +..++|.|-.|. ++++|++... .......
T Consensus 376 nt~~~v~ca~fSd----dssmlA~Gf~dS-----~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 376 NTYQGVTCAEFSD----DSSMLACGFVDS-----SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred EcCCcceeEeecC----Ccchhhcccccc-----EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 5667799999999 778898888774 4779988420 0112233
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
..+|.++|..+.|+ +.++|+++|.|+++|+|.+.....+...+ +|..||.+++|+ |-+|+|+|.|++-++|..+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec---CCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 46799999999999 88999999999999999998665555443 799999999999 9999999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
.. .+.+++.+|-+ .|.|++|+| .++++||+.|.++|+||..+ +..++.|.+|. ++|.+++|+|.|.+
T Consensus 524 ~~-~PlRifaghls-DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~---G~~VRiF~GH~-------~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 524 HN-KPLRIFAGHLS-DVDCVSFHPNSNYVATGSSDRTVRLWDVST---GNSVRIFTGHK-------GPVTALAFSPCGRY 591 (707)
T ss_pred cC-Cchhhhccccc-ccceEEECCcccccccCCCCceEEEEEcCC---CcEEEEecCCC-------CceEEEEEcCCCce
Confidence 87 58888888876 899999999 99999999999999999999 88888898876 89999999999975
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++|++||.|++||+..+.. +..+ .+|++.|.+|.|++++. .|+++|.|.+|++||..
T Consensus 592 -LaSg~ed~~I~iWDl~~~~~-v~~l----------~~Ht~ti~SlsFS~dg~----------vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 592 -LASGDEDGLIKIWDLANGSL-VKQL----------KGHTGTIYSLSFSRDGN----------VLASGGADNSVRLWDLT 649 (707)
T ss_pred -EeecccCCcEEEEEcCCCcc-hhhh----------hcccCceeEEEEecCCC----------EEEecCCCCeEEEEEch
Confidence 58999999999999998544 3433 57999999999999988 79999999999999863
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=213.33 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=224.6
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEE
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
.|.+....|...|+.++|+| ++.+||||++|.. |-+|++.++.+.. -..-.|.++|..+.|. +++.+++
T Consensus 38 ap~m~l~gh~geI~~~~F~P----~gs~~aSgG~Dr~-----I~LWnv~gdceN~-~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP----DGSCFASGGSDRA-----IVLWNVYGDCENF-WVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred chhhhcCCCcceEEEEEECC----CCCeEeecCCcce-----EEEEeccccccce-eeeccccceeEeeeeccCCCEEEE
Confidence 34556667888999999999 8999999999976 6699985443221 1122799999999999 9999999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.|.+++.||.+.++... ..+.|..-|+++... + ..+.|++.||++++||+++. ...+++.... .++++.
T Consensus 108 ~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~~ky--qltAv~ 181 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFENKY--QLTAVG 181 (338)
T ss_pred ecCCceEEEEecccceeee---hhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccccce--eEEEEE
Confidence 9999999999998665443 234688899999877 4 45668899999999999987 3566655454 499999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-- 241 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-- 241 (343)
|.. ...+++|+-|+.|++||+|. ......+.+|. ++|+.+..+|.+..+ ++-+-|.++++||+|--
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~---~d~~~~lsGh~-------DtIt~lsls~~gs~l-lsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRK---NDGLYTLSGHA-------DTITGLSLSRYGSFL-LSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ecccccceeeccccCceeeecccc---CcceEEeeccc-------CceeeEEeccCCCcc-ccccccceEEEEEecccCC
Confidence 999 88999999999999999999 78888888887 889999999998765 58889999999999852
Q ss_pred cee-eeeecCCCCcccccCCc--cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccc
Q 019258 242 QQS-IVLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAIN 316 (343)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~ 316 (343)
.++ +.+... ..| +.-....+|+|++. .+-++|.|..+++|+.... ...+-.+-..||
T Consensus 251 ~~R~v~if~g--------~~hnfeknlL~cswsp~~~----------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 251 SQRCVKIFQG--------HIHNFEKNLLKCSWSPNGT----------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred CCceEEEeec--------chhhhhhhcceeeccCCCC----------ccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 222 222211 223 33457788999887 7899999999999998643 233334457999
Q ss_pred eeeecCCCCCeeEEccCCceEEE
Q 019258 317 SFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.++++|.. .++.+.+.|.+||+
T Consensus 313 ~~~Fhp~e-~iils~~sdk~i~l 334 (338)
T KOG0265|consen 313 EVDFHPTE-PIILSCSSDKTIYL 334 (338)
T ss_pred EeeecCCC-cEEEEeccCceeEe
Confidence 99999954 78888888888886
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=211.08 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=199.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
-+|.+.|.++.|+ +.+++++++.||.+.|||..+.......+ .-..-|..+++. ++.+++|+.|+...+|++.+
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 3688999999999 99999999999999999987433332222 123457788887 89999999999999999975
Q ss_pred C--c---eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 145 G--G---EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 145 ~--~---~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
. . ++.+.+.+|.. .+.|..|.+.+.++|++.|.+..+||+++ ++.+..|.+|. +-|.++++.|.
T Consensus 129 ~d~~g~~~v~r~l~gHtg-ylScC~f~dD~~ilT~SGD~TCalWDie~---g~~~~~f~GH~-------gDV~slsl~p~ 197 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTG-YLSCCRFLDDNHILTGSGDMTCALWDIET---GQQTQVFHGHT-------GDVMSLSLSPS 197 (343)
T ss_pred ccccccceeeeeecCccc-eeEEEEEcCCCceEecCCCceEEEEEccc---ceEEEEecCCc-------ccEEEEecCCC
Confidence 3 1 34555667776 89999999988999999999999999999 88888899887 77999999996
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
..+.|++|+.|+..++||+|.+...+.+ .+|+..|++|.|+|++. .+++||+|++.+++
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF-----------~ghesDINsv~ffP~G~----------afatGSDD~tcRly 256 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTF-----------EGHESDINSVRFFPSGD----------AFATGSDDATCRLY 256 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEee-----------cccccccceEEEccCCC----------eeeecCCCceeEEE
Confidence 6788999999999999999998666665 47999999999999988 69999999999999
Q ss_pred ecCCC-ccccccc---ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQGEE-PFELLAE---PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~~~~-~~~~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.... ...++.. .++|+|++|+- .|++|++|++|....+|.
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEee
Confidence 87532 2233333 47899999997 789999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=231.50 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=204.4
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc-CCCeEEEEcC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
....|++.|.+|.|++ ++.++++|..++. |+.|+..-+. ...... |...|.+++|+ ++..|++++.
T Consensus 133 ilQaHDs~Vr~m~ws~----~g~wmiSgD~gG~-----iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~Sd 200 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSH----NGTWMISGDKGGM-----IKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSD 200 (464)
T ss_pred HhhhhcccceeEEEcc----CCCEEEEcCCCce-----EEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecC
Confidence 3446889999999999 8999999988754 6799884322 122233 44789999999 8889999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
||+|+|||.....+-.++ .+|.-.|.+++|. ...++++|.|..|++||.+++. +...+..|.. .|..+.|++
T Consensus 201 Dg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKn-tVl~~~f~~n 275 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKN-TVLAVKFNPN 275 (464)
T ss_pred CCeEEEEeccCCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccc-eEEEEEEcCC
Confidence 999999999844333333 4799999999999 7789999999999999999995 5555566665 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
++.|+|++.|..++++|+|. -+.+..+.+|. ..++++.|||-.+.+|.+|+.||.|..|.+.. +.|+..
T Consensus 276 ~N~Llt~skD~~~kv~DiR~---mkEl~~~r~Hk-------kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-~~p~~~ 344 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRT---MKELFTYRGHK-------KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-EEPLGE 344 (464)
T ss_pred CCeeEEccCCceEEEEehhH---hHHHHHhhcch-------hhheeeccccccccceeeccCCCceEEEeccc-cccccC
Confidence 99999999999999999997 57777788776 77999999999999999999999999999874 555554
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.. .+|...||+++|||-+. .|+++|.|.+++.|....
T Consensus 345 i~---------~AHd~~iwsl~~hPlGh----------il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 345 IP---------PAHDGEIWSLAYHPLGH----------ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred CC---------cccccceeeeeccccce----------eEeecCCCcceeeeccCC
Confidence 42 78999999999999987 799999999999997643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=217.49 Aligned_cols=274 Identities=12% Similarity=0.143 Sum_probs=222.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|...|.+|+.-| .+++|+|||.|++ ++|||+.. ..+..+++ |-..|..++++ .-.+|++++.|+.|
T Consensus 150 HlgWVr~vavdP----~n~wf~tgs~Drt-----ikIwDlat---g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 150 HLGWVRSVAVDP----GNEWFATGSADRT-----IKIWDLAT---GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ccceEEEEeeCC----CceeEEecCCCce-----eEEEEccc---CeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 667899999999 7999999999986 56999954 34444444 88899999999 77899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
+.||+..++ +++...+|-..|.+++.. .+.+++|+.|.++++||+++.. ....+.+|.. +|..+.+.+ ...+
T Consensus 218 KCwDLe~nk---vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~-~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 218 KCWDLEYNK---VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTN-PVASVMCQPTDPQV 292 (460)
T ss_pred EEEechhhh---hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCC-cceeEEeecCCCce
Confidence 999998544 344455899999999998 8899999999999999999984 6666677887 899999998 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++|+.|++|++||++. ++....+..|. ..+.+++.||.. +.||+++.| .|+-|++-.+..... +
T Consensus 293 it~S~D~tvrlWDl~a---gkt~~tlt~hk-------ksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~~n-l--- 356 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRA---GKTMITLTHHK-------KSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFLQN-L--- 356 (460)
T ss_pred EEecCCceEEEeeecc---CceeEeeeccc-------ceeeEEecCCch-hhhhccCCc-cceeccCCccchhhc-c---
Confidence 9999999999999999 88888877665 679999999974 678888776 799999987665555 3
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccc---ccc------cccceeeec
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELL---AEP------CAINSFDID 321 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~---~~~------~~i~s~~~~ 321 (343)
.+|.+-|+++..+.++ .+++|++.|.|..||..... .+.. ..+ ..|.+-.++
T Consensus 357 -------sgh~~iintl~~nsD~-----------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 357 -------SGHNAIINTLSVNSDG-----------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred -------ccccceeeeeeeccCc-----------eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 5799999999998765 68999999999998865432 2211 122 235555555
Q ss_pred CCCCCeeEEccCCceEEEEeC
Q 019258 322 PQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. .|..|+++..|..|.+|+.
T Consensus 419 k-tg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 419 K-TGSRLITGEADKTIKMYKE 438 (460)
T ss_pred c-cCceEEeccCCcceEEEec
Confidence 3 5689999999999999974
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=226.56 Aligned_cols=265 Identities=14% Similarity=0.191 Sum_probs=209.0
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCC--------CCccCCCCCCeeEEEcc--C
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLT--------PHSQWTPPTRISSLSTS--H 81 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~--------~~~~~~~~~~v~~v~~~--~ 81 (343)
..++.|...|+.++..| +++..++|++..++ +.||+....+... .+....|.++-.+++|+ .
T Consensus 118 ~~~i~h~gEVnRaRymP---Qnp~iVAt~t~~~d-----v~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMP---QNPNIVATKTSSGD-----VYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred EEeccCCccchhhhhCC---CCCcEEEecCCCCC-----EEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 45688999999999999 77888888877665 5599985432211 12345677778889999 7
Q ss_pred CCeEEEEcCCCcEEEEEccCce----eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC-CceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQV----LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG-GGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~ 153 (343)
...|++++.|+.|++||+.... .+.......+|...|..++|. ...|.+++.|+.+.+||+++ ..++.....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 7889999999999999998322 233334456799999999998 78899999999999999995 224555556
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.|.. .+.|++|+| ...|+||+.|++|++||+|. ..+++..+.+|. ..|.+|.|+|....++|+++.|+
T Consensus 270 ah~~-~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn--L~~~lh~~e~H~-------dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 270 AHSA-EVNCVAFNPFNEFILATGSADKTVALWDLRN--LNKPLHTFEGHE-------DEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred ccCC-ceeEEEeCCCCCceEEeccCCCcEEEeechh--cccCceeccCCC-------cceEEEEeCCCCCceeEecccCC
Confidence 6666 899999999 77899999999999999999 778888888887 78999999999999999999999
Q ss_pred cEEEEEccCCceeee---eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWDLRWQQQSIV---LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.+||+.+-...+. -......-.+.+.+|...|..+.|+|..+- .++|.++|+.|.||+..+
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW---------~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW---------TIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe---------EEEEecCCceEEEeeccc
Confidence 999999965332211 000000111234789999999999999997 789999999999999754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-31 Score=225.30 Aligned_cols=246 Identities=20% Similarity=0.245 Sum_probs=200.8
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeee-------eeccCCccccCeEEEEec---CCEEEEEeCCC
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLS-------VDENSGFHVGPISGVDLT---GSECVSVGEDG 135 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg 135 (343)
+.|+++|+.+.+. +...+++.+..+.|.|||..+..... ..-...+|.+.-.++.|+ ...+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 6788999999998 77888889999999999997322111 111234688888899999 77899999999
Q ss_pred cEEEEECCCCc------eEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc
Q 019258 136 RVNLVSVIGGG------EFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA 207 (343)
Q Consensus 136 ~v~~wd~~~~~------~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (343)
+|.+||+.... .+...+..|.. .|..++|++ ..+|.++++|+.+.|||+|++ ..++......|.
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~------ 272 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHS------ 272 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCc-ceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccC------
Confidence 99999996521 34566777777 899999999 889999999999999999962 245555566665
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
++++|++|+|.+.++||+|+.|++|++||+|+..++...+ ..|+..|.+|.|+|+... .|
T Consensus 273 -~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~----------e~H~dev~~V~WSPh~et---------vL 332 (422)
T KOG0264|consen 273 -AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF----------EGHEDEVFQVEWSPHNET---------VL 332 (422)
T ss_pred -CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec----------cCCCcceEEEEeCCCCCc---------ee
Confidence 8899999999999999999999999999999998888877 889999999999999987 89
Q ss_pred EEEecCCeEEEEecCCC------------ccccccc----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGEE------------PFELLAE----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~------------~~~~~~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|++.|+++.+||.... +.+++.. -..|+.|+|+|+.+-.+++.++|..+.||+
T Consensus 333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999999999996432 2333322 267999999998766777777888888986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=214.23 Aligned_cols=278 Identities=14% Similarity=0.107 Sum_probs=226.1
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
+-..|..+-++| +-..++++|.|.+ |++||+...+. ... -+|...|.++.|. .+.+|++++.|-.+
T Consensus 107 ~r~~vt~v~~hp----~~~~v~~as~d~t-----ikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 107 HRSSVTRVIFHP----SEALVVSASEDAT-----IKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred cccceeeeeecc----CceEEEEecCCce-----EEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccch
Confidence 456788888888 6777888888854 77999965332 222 3688889999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||.... ....+...+|.-.|.++.+- +++++|++.|.+|+.|++.++ .+...+.+|.. .|..++.+. +..+
T Consensus 175 ~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~e-wvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 175 KLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSE-WVRMVRVNQDGTII 250 (406)
T ss_pred hheeHHHH--HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchH-hEEEEEecCCeeEE
Confidence 99999742 22233444688889999887 999999999999999999999 57777777776 899999888 7888
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--------------CeEEEEEecCCcEEEEE
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--------------KHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--------------~~~~~sg~~dg~v~iwd 237 (343)
++++.|.+|++|-+.+ .++...+..|+ .+|.|++|-|.. ..++.+++.|++|++||
T Consensus 251 As~s~dqtl~vW~~~t---~~~k~~lR~hE-------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVAT---KQCKAELREHE-------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred EecCCCceEEEEEecc---chhhhhhhccc-------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 9999999999999988 55555566665 779999998741 24788999999999999
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccccccc
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAI 315 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i 315 (343)
+.++.....+. +|...|.+++|+|.+. +|+||.+|++|++|+.+.. ...+..+..-+
T Consensus 321 v~tg~cL~tL~-----------ghdnwVr~~af~p~Gk----------yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 321 VSTGMCLFTLV-----------GHDNWVRGVAFSPGGK----------YILSCADDKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred ccCCeEEEEEe-----------cccceeeeeEEcCCCe----------EEEEEecCCcEEEEEeccceeeeccCCCccee
Confidence 99987766664 6999999999999998 8999999999999998643 33444445678
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+++|++. +..+|++|+=+..+.+|..
T Consensus 380 t~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCC-CCceEEeccccceeeeeec
Confidence 9999997 4589999999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=209.47 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=206.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
++.+|...+....|+|++ ...+.+++++.|+. |++|+++.+..+ ....-+|..+|.++.|. +.+.++++
T Consensus 53 e~~s~d~~D~LfdV~Wse---~~e~~~~~a~GDGS-----Lrl~d~~~~s~P-i~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSE---NHENQVIAASGDGS-----LRLFDLTMPSKP-IHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred EEEeeecccceeEeeecC---CCcceEEEEecCce-----EEEeccCCCCcc-hhHHHhhhhheEEeccccccceeEEee
Confidence 566777888999999999 45678889998964 889998543322 22334688999999999 77788899
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|.||+|++|+...++.+... ++|..-|....|+ .+.|+++|.|+++++||++...+... ++.|.. .+.|+.|
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~-Eil~cdw 198 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNS-EILCCDW 198 (311)
T ss_pred ccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccc-eeEeecc
Confidence 99999999998865555443 4699999999998 89999999999999999987433444 556664 7999999
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+. .+.++||+.|+.|+.||+|+ -..|+..+.+|. -.|..+.|+|....++++++.|=+++|||...+..
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~--~r~pl~eL~gh~-------~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRN--LRTPLFELNGHG-------LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhh--ccccceeecCCc-------eEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 88 77899999999999999998 667888887776 77999999999999999999999999999876554
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+... ..|..-|..+.|++..+. ++++++-|+.+++|++
T Consensus 270 ~~e~~----------~~HtEFv~g~Dws~~~~~---------~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIETV----------DHHTEFVCGLDWSLFDPG---------QVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhh----------hccceEEeccccccccCc---------eeeecccccceeeecc
Confidence 44443 568899999999999887 9999999999999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=213.86 Aligned_cols=277 Identities=18% Similarity=0.197 Sum_probs=214.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| +++++++++.|+. +++|++..... ......|...+..+.|+ +++.|++++.+|.|
T Consensus 7 ~h~~~i~~~~~~~----~~~~l~~~~~~g~-----i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 7 GHTGGVTCVAFSP----DGKLLATGSGDGT-----IKVWDLETGEL--LRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred ccCCCEEEEEEcC----CCCEEEEeecCcE-----EEEEEeeCCCc--EEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 5778999999999 7899999998864 77999965331 12233566788899999 66799999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+..... ..|...+.++.|. +..+++++.||.+.+||+++++ ....+..+.. .+.+++|++ +..+
T Consensus 76 ~i~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~l 150 (289)
T cd00200 76 RLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTD-WVNSVAFSPDGTFV 150 (289)
T ss_pred EEEEcCcccceEEE---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCC-cEEEEEEcCcCCEE
Confidence 99999854333322 2577899999998 4677777779999999999764 4444444554 799999999 6666
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. .+++..+..+. ..+.+++|+|++..+ ++++.||.|++||++.... ....
T Consensus 151 ~~~~~~~~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~~~-~~~~--- 215 (289)
T cd00200 151 ASSSQDGTIKLWDLRT---GKCVATLTGHT-------GEVNSVAFSPDGEKL-LSSSSDGTIKLWDLSTGKC-LGTL--- 215 (289)
T ss_pred EEEcCCCcEEEEEccc---cccceeEecCc-------cccceEEECCCcCEE-EEecCCCcEEEEECCCCce-ecch---
Confidence 6666699999999987 66676776544 679999999988655 5677799999999987433 3333
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-C-cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-E-PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~-~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
..|...+.++.|+|++. .+++++.||.|++|+... . ...+..+...+.++++++ ++.+++
T Consensus 216 -------~~~~~~i~~~~~~~~~~----------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 277 (289)
T cd00200 216 -------RGHENGVNSVAFSPDGY----------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLA 277 (289)
T ss_pred -------hhcCCceEEEEEcCCCc----------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEE
Confidence 35788999999999854 677777799999999753 2 233334456899999998 468999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
++++++.+.+|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=203.91 Aligned_cols=290 Identities=11% Similarity=0.076 Sum_probs=215.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|..+.|++|+|+| +...+++.||||++ +|+|++.......+.....|+++|.+++|+ ++..+++|+.|+.+
T Consensus 25 pP~DsIS~l~FSP---~~~~~~~A~SWD~t-----VR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 25 PPEDSISALAFSP---QADNLLAAGSWDGT-----VRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CcccchheeEecc---ccCceEEecccCCc-----eEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 6778999999999 56677889999986 679999775556667778899999999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
++||+..++...+. .|.++|..+.|. -..|++||.|.+|+.||+++.. +...+.-++. ++++... ...
T Consensus 97 k~wDL~S~Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeR--vYa~Dv~-~pm 168 (347)
T KOG0647|consen 97 KLWDLASGQVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPER--VYAADVL-YPM 168 (347)
T ss_pred EEEEccCCCeeeee----ecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeeccce--eeehhcc-Cce
Confidence 99999977765554 699999999998 3468999999999999999875 4545455554 7776543 457
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ceeeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQSIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~~~~~~ 248 (343)
++.+..++.|.+|+|+. +..........- + -.+.||+.+++.... +.|+-+|++.+-.+..+ .....+.
T Consensus 169 ~vVata~r~i~vynL~n--~~te~k~~~SpL--k----~Q~R~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLEN--PPTEFKRIESPL--K----WQTRCVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred eEEEecCCcEEEEEcCC--CcchhhhhcCcc--c----ceeeEEEEEecCCce-EeeeecceEEEEecCCCCccCceeEE
Confidence 88888999999999977 222222222211 1 558999999987654 78999999999988654 2222222
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
. |+....+ ...--+|++|+|||... .|++++.||++-.||.+.. ..+....+.||....|+. +|+
T Consensus 240 C-HR~~~~~-~~~VYaVNsi~FhP~hg----------tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ 306 (347)
T KOG0647|consen 240 C-HRSTNSV-NDDVYAVNSIAFHPVHG----------TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGS 306 (347)
T ss_pred E-eccCCCC-CCceEEecceEeecccc----------eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCC
Confidence 1 0000000 01123689999999877 6999999999999998644 334344578999999997 677
Q ss_pred eeEE--ccCCceEEEEeCC
Q 019258 327 DVIC--SLEWESIAIVSRP 343 (343)
Q Consensus 327 ~l~~--~~~~~~i~~~~~~ 343 (343)
+.+. |+||.+-|.+++|
T Consensus 307 ifaYA~gYDWSkGhe~~n~ 325 (347)
T KOG0647|consen 307 IFAYALGYDWSKGHEGNNP 325 (347)
T ss_pred EEEEEeecccccccccCCC
Confidence 7764 5577666665443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=226.55 Aligned_cols=278 Identities=18% Similarity=0.186 Sum_probs=217.8
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
...|.++.++| +++.+++++.|+. +++|+...... .+... .+|...|++++|+ ++.++++++.|++|+
T Consensus 159 ~~sv~~~~fs~----~g~~l~~~~~~~~-----i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 159 CPSVTCVDFSP----DGRALAAASSDGL-----IRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred cCceEEEEEcC----CCCeEEEccCCCc-----EEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 57899999999 8999999999965 56888843221 12222 5788899999999 888999999999999
Q ss_pred EEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 96 VLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 96 v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
|||+. ....+... .+|...|++++|+ ++.+++|+.|++|++||++++ .+.+.+..|.. .|++++|.+ .+.+
T Consensus 229 iwd~~~~~~~~~~l---~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~-~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL---KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSD-GISGLAFSPDGNLL 303 (456)
T ss_pred EeeccCCCeEEEEe---cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCC-ceEEEEECCCCCEE
Confidence 99994 32333333 3799999999999 889999999999999999998 47777788877 899999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCC--CeeEEecccCCCCCccc-CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 172 VTGGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASG-MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
++++.|+.|++||+.. +. ++..+..+.. . +++++.|+|++.++ ++++.|+.+++||++....+..+.
T Consensus 304 ~s~s~d~~i~vwd~~~---~~~~~~~~~~~~~~------~~~~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLET---GSKLCLKLLSGAEN------SAPVTSVQFSPNGKYL-LSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEcCCCccEEEEECCC---CceeeeecccCCCC------CCceeEEEECCCCcEE-EEecCCCeEEEEEccCCcceeeec
Confidence 9999999999999998 55 3445554442 3 69999999998765 689999999999999876666654
Q ss_pred cCCCCcccccCCccc---cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-cccccc-ccccceeeecC
Q 019258 249 GVGTGEAVTHSLSES---EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAE-PCAINSFDIDP 322 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~---~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~-~~~i~s~~~~~ 322 (343)
.|.. .+....+.+.+. .+++++.|+.|++|+.... . ..+..+ ..++..+++++
T Consensus 374 -----------~~~~~~~~~~~~~~~~~~~----------~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~ 432 (456)
T KOG0266|consen 374 -----------GHSNLVRCIFSPTLSTGGK----------LIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP 432 (456)
T ss_pred -----------ccCCcceeEecccccCCCC----------eEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC
Confidence 3444 344444455555 7999999999999998633 2 233334 46788999998
Q ss_pred CCCCeeEEcc--CCceEEEEeC
Q 019258 323 QNPSDVICSL--EWESIAIVSR 342 (343)
Q Consensus 323 ~~~~~l~~~~--~~~~i~~~~~ 342 (343)
...+++.++ .|+.+.+|+.
T Consensus 433 -~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 433 -TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -CcCeeeecCcCCCceEEEecC
Confidence 446667666 5789999975
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=212.09 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=197.1
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.|.+-|.|+++- .+..|++|+.|++++|||+..++..... .+|...|..+.++ -.++++++.|+.|+-||++.+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl---tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL---TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee---cchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 578889999998 7789999999999999999976544333 4799999999999 889999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+ +.+.+.+|-+ .|+|++.+| -..++||+.|.++++||+|+ ..++..+.+|. .+|.++.+.|..+.+
T Consensus 226 k-vIR~YhGHlS-~V~~L~lhPTldvl~t~grDst~RvWDiRt---r~~V~~l~GH~-------~~V~~V~~~~~dpqv- 292 (460)
T KOG0285|consen 226 K-VIRHYHGHLS-GVYCLDLHPTLDVLVTGGRDSTIRVWDIRT---RASVHVLSGHT-------NPVASVMCQPTDPQV- 292 (460)
T ss_pred h-hHHHhccccc-eeEEEeccccceeEEecCCcceEEEeeecc---cceEEEecCCC-------CcceeEEeecCCCce-
Confidence 4 7777777776 899999999 88999999999999999999 78888899887 889999999987765
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++|+.|++|++||++.+.....+. .|...|.+++.||... .++|+|.|. |+-|+..+.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt-----------~hkksvral~lhP~e~----------~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLT-----------HHKKSVRALCLHPKEN----------LFASASPDN-IKQWKLPEG 350 (460)
T ss_pred EEecCCceEEEeeeccCceeEeee-----------cccceeeEEecCCchh----------hhhccCCcc-ceeccCCcc
Confidence 699999999999999977665554 6889999999999876 577777764 677887654
Q ss_pred c--ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 305 P--FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 305 ~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. ..+-.+...||++.++.+ .++++|+|++.|.+|+
T Consensus 351 ~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWD 387 (460)
T ss_pred chhhccccccceeeeeeeccC--ceEEEcCCceEEEEEe
Confidence 3 222233467899999974 7999999999999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=214.93 Aligned_cols=275 Identities=9% Similarity=0.085 Sum_probs=219.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
..|-+-|++++=+| ..-..+++||.|+. +++|++...... ...-.|.|.|..+++.. ..+++++.|.+|
T Consensus 63 ~gHrdGV~~lakhp---~~ls~~aSGs~DG~-----VkiWnlsqR~~~--~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHP---NKLSTVASGSCDGE-----VKIWNLSQRECI--RTFKAHEGLVRGICVTQ-TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCc---chhhhhhccccCce-----EEEEehhhhhhh--heeecccCceeeEEecc-cceEEecCCcce
Confidence 46778899999999 33478999999987 669999653222 23346889999999985 778899999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
+.|.+... ++... .....+..++.+ +..|+|||.+ |-+||..... +.+.+..... .|.+++|+| ...
T Consensus 132 K~wk~~~~-p~~ti----lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~D-ti~svkfNpvETsI 202 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTI----LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGAD-SISSVKFNPVETSI 202 (433)
T ss_pred eeeeccCC-cceee----eccccccccccccccccccccCce--eeecccccCC-ccceeecCCC-ceeEEecCCCcchh
Confidence 99998742 22111 133466777776 7889999876 9999997764 5555444433 699999999 677
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|++++.|+.|.+||+|+ ..|+..+... ...+.|+|+| ....|++|++|..++.||+|....|....
T Consensus 203 Las~~sDrsIvLyD~R~---~~Pl~KVi~~--------mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~-- 268 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQ---ASPLKKVILT--------MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH-- 268 (433)
T ss_pred eeeeccCCceEEEeccc---CCccceeeee--------ccccceecCc-cccceeeccccccceehhhhhhcccchhh--
Confidence 88888999999999999 7888775422 4578999999 55678999999999999999998888876
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccc--cccceeeecCCCCCe
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEP--CAINSFDIDPQNPSD 327 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~--~~i~s~~~~~~~~~~ 327 (343)
..|...|.+|.|+|.+. .+++||.|.+|+++..... ..+++... ..|.++.++- +.+|
T Consensus 269 --------~dhvsAV~dVdfsptG~----------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dsky 329 (433)
T KOG0268|consen 269 --------KDHVSAVMDVDFSPTGQ----------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKY 329 (433)
T ss_pred --------cccceeEEEeccCCCcc----------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccE
Confidence 88999999999999998 6999999999999987643 45666553 6789999997 4599
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
++||+|++.|++|+-
T Consensus 330 i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKA 344 (433)
T ss_pred EEecCCCcceeeeec
Confidence 999999999999973
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=210.56 Aligned_cols=250 Identities=18% Similarity=0.209 Sum_probs=195.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL--TPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|...|.+++|.-..+ ....|+++|.|++ |++|..+..+.. ....-.+|...|-++.-. ++.++++|+.|.
T Consensus 142 Ght~~ik~v~~v~~n~-~~~~fvsas~Dqt-----l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNS-SSCLFVSASMDQT-----LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred cCCcceeeeEEEecCC-ccceEEEecCCce-----EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 6888999999988421 2247999999965 445555322211 112223899999999987 899999999999
Q ss_pred cEEEEEccCc-----eee-----------------eeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 93 SLHVLSSAMQ-----VLL-----------------SVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 93 ~v~v~~~~~~-----~~~-----------------~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
++.+|+.... +.. .......+|.++|.++.|. ...+.++|.|.+|+.||+.++....
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccccee
Confidence 9999994211 000 1111234699999999999 8899999999999999999986444
Q ss_pred EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 150 RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+ .+.. .+.++++++ .+++++|+.|..|++||.|.++..-...++.+|. .+|.++.|+|...++|++|+
T Consensus 296 ~~-~~~k--sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~-------nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 296 TL-TTNK--SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK-------NWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ee-ecCc--ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch-------hhhhheecCCCCceEEEEEe
Confidence 44 3444 599999999 8999999999999999999933222334577765 89999999999999999999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.|+++++||+|....|+..+ .+|...|.++.|+... .+++|+.|.+|++.+..
T Consensus 366 ~D~t~klWDvRS~k~plydI----------~~h~DKvl~vdW~~~~-----------~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDI----------AGHNDKVLSVDWNEGG-----------LIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCCCcceee----------ccCCceEEEEeccCCc-----------eEEeccCcceEEEeccc
Confidence 99999999999977787777 7899999999999542 68999999999998753
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=224.55 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=226.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEE-ccCCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLS-TSHQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~-~~~~~~l~~~s~dg~v~ 95 (343)
-.+.|..|++.- ++.++++.++.-+ +|+++++++ ..|.-..+|...|.++. |+.+.+|++++.|.+++
T Consensus 322 ~ndEI~Dm~~lG---~e~~~laVATNs~-----~lr~y~~~~---~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 322 YNDEILDMKFLG---PEESHLAVATNSP-----ELRLYTLPT---SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred CchhheeeeecC---CccceEEEEeCCC-----ceEEEecCC---CceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 346789998887 5778888887543 488998855 55555668999999999 55778999999999999
Q ss_pred EEEccCcee-eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc--e-EEE-----EEcCCCccceEEE
Q 019258 96 VLSSAMQVL-LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG--E-FKR-----VYDGNGLVGFNCV 163 (343)
Q Consensus 96 v~~~~~~~~-~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~--~-~~~-----~~~~~~~~~v~~~ 163 (343)
+|+++++.. ........+|.+.|.++..+ ...|+++|.|+++++|++...+ . +.. ....|+. .|.|+
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-dIN~V 469 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-DINCV 469 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-cccce
Confidence 999964332 22333445799999999998 6789999999999999997621 1 111 2234555 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+++| ..+++||+.|++.+||++.+ ......+.+|. ..+.||.|+|.. .+++++|.|++|+||.+.+..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~---~~l~~vLsGH~-------RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQ---LRLLGVLSGHT-------RGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred EecCCCceEEecccccceeeecccC---ceEEEEeeCCc-------cceEEEEecccc-ceeEeccCCceEEEEEeccce
Confidence 9999 88899999999999999987 67777788887 669999999986 578999999999999999877
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s~~~ 320 (343)
+...+ .+|...|..+.|-.++. +|+||+.||.|++|+-. .-...+-.+...|.++..
T Consensus 539 ClkT~-----------eGH~~aVlra~F~~~~~----------qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 539 CLKTF-----------EGHTSAVLRASFIRNGK----------QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred eeeee-----------cCccceeEeeeeeeCCc----------EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 66555 57999999999998877 89999999999999865 334555566688999999
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++ +...+++|+.|+.|-+|+
T Consensus 598 ~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 598 SP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cC-ccceeEecCCCeEEEEee
Confidence 98 457889999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=194.29 Aligned_cols=247 Identities=13% Similarity=0.139 Sum_probs=193.0
Q ss_pred ccCCccc-ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEc
Q 019258 13 HRFPQSK-YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 13 ~~~~~~~-~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
..++|.+ .|+.+...| +.+.||++++- .++++|+...... ++.+ -.|...|+++.|. +++.+++|+
T Consensus 34 rTiqh~dsqVNrLeiTp----dk~~LAaa~~q------hvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITP----DKKDLAAAGNQ------HVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred EEEecCccceeeEEEcC----CcchhhhccCC------eeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecC
Confidence 3445544 688888888 88899988765 4889999664433 3444 4567899999999 999999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.||+++|||++. +...+. ..|..+|+++..+ ...|++|..+|.|++||+.+........ +.....+.++...|
T Consensus 103 eDgt~kIWdlR~---~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 103 EDGTVKIWDLRS---LSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMP 177 (311)
T ss_pred CCceEEEEeccC---cccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcC
Confidence 999999999984 222222 2578999999998 7789999999999999998874333333 33334799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCC---CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGS---GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+..++++...|...+|++-.... -.|+.+++.|. +.+..+.++|++.+ +++++.|.+++||+.... .
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-------~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~ 248 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-------GHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F 248 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-------ceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e
Confidence 88888889999999999865211 23445566555 77999999999864 689999999999998875 2
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
...+. .++|+..+|+.+|+.++. +|+++|.|+..++|+...
T Consensus 249 kle~~---------l~gh~rWvWdc~FS~dg~----------YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 249 KLELV---------LTGHQRWVWDCAFSADGE----------YLVTASSDHTARLWDLSA 289 (311)
T ss_pred eeEEE---------eecCCceEEeeeeccCcc----------EEEecCCCCceeeccccc
Confidence 22222 167999999999999988 899999999999999754
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=213.43 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=212.1
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
....|+.++++| .++.-+|+++.- ++.|++.......+. ...+...|.++.|. ++.+|++|...|.|+
T Consensus 25 e~~~vssl~fsp---~~P~d~aVt~S~------rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~sG~V~ 93 (487)
T KOG0310|consen 25 EHNSVSSLCFSP---KHPYDFAVTSSV------RVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDESGHVK 93 (487)
T ss_pred ccCcceeEecCC---CCCCceEEeccc------EEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCCcCcEE
Confidence 345799999999 566555554432 377888854333222 33456789999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
|||... ..+.+...+|+.+|..+.|+ +..+++|++|+.+++||+.+.. +...+.+|.. .|.|.+|+| ...
T Consensus 94 vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htD-YVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 94 VFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTD-YVRCGDISPANDHI 168 (487)
T ss_pred Eecccc---HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcc-eeEeeccccCCCeE
Confidence 999552 22334445799999999998 7788999999999999999984 4445566766 899999999 568
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
++|||+||+|++||+|. ....+.++. |. .+|..+.+-|.|.. +++++. ..|++||+-++.+....+
T Consensus 169 vvtGsYDg~vrl~DtR~--~~~~v~eln-hg-------~pVe~vl~lpsgs~-iasAgG-n~vkVWDl~~G~qll~~~-- 234 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRS--LTSRVVELN-HG-------CPVESVLALPSGSL-IASAGG-NSVKVWDLTTGGQLLTSM-- 234 (487)
T ss_pred EEecCCCceEEEEEecc--CCceeEEec-CC-------CceeeEEEcCCCCE-EEEcCC-CeEEEEEecCCceehhhh--
Confidence 99999999999999999 334444443 32 78999999998764 455443 489999998777666655
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
..|...|+++.+..++. .|+|+|-||.+++++.. .+..--+.-+.||.+++++|+ ++.++
T Consensus 235 --------~~H~KtVTcL~l~s~~~----------rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d-d~t~v 295 (487)
T KOG0310|consen 235 --------FNHNKTVTCLRLASDST----------RLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD-DQTVV 295 (487)
T ss_pred --------hcccceEEEEEeecCCc----------eEeecccccceEEEEccceEEEEeeecccceeeEEecCC-CceEE
Confidence 45899999999998776 79999999999999953 333333444899999999994 59999
Q ss_pred EccCCceEEEE
Q 019258 330 CSLEWESIAIV 340 (343)
Q Consensus 330 ~~~~~~~i~~~ 340 (343)
.|..+|-+.+-
T Consensus 296 iGmsnGlv~~r 306 (487)
T KOG0310|consen 296 IGMSNGLVSIR 306 (487)
T ss_pred Eecccceeeee
Confidence 99999876543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-28 Score=217.99 Aligned_cols=285 Identities=18% Similarity=0.208 Sum_probs=220.0
Q ss_pred cccCCcc-cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 12 VHRFPQS-KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 12 ~~~~~~~-~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+|...-+ .+|..+.|+. .+++++.|+.- .+ .|-+|+...+.. .+++..|-..+++++++ ++.++++|+
T Consensus 300 ih~LSis~~~I~t~~~N~----tGDWiA~g~~k--lg--QLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNS----TGDWIAFGCSK--LG--QLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEeecccceeeEEEecc----cCCEEEEcCCc--cc--eEEEEEeeccce--eeeccccccceeeEEECCCCcEEEecc
Confidence 4444434 5788888888 78999998743 23 355666644332 36667889999999999 999999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.||+|+||+...+-.+... ..|+..|+.++|. ++.+++.|-||+|+.||+.+.+. .+.+..+......|++-.|
T Consensus 370 eDgKVKvWn~~SgfC~vTF---teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~ 445 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTF---TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDP 445 (893)
T ss_pred CCCcEEEEeccCceEEEEe---ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcC
Confidence 9999999999854444332 3599999999999 99999999999999999999854 4444445444788999999
Q ss_pred -CCEEEEEeCCC-cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 168 -PTEFVTGGFGY-GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 168 -~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
+..+++|+.|. .|.+|++.+ ++.+-.+.+|+ +||.+++|+|.+. .+++|+.|.+|++||+-......
T Consensus 446 sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHE-------gPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHE-------GPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred CCCEEEeeccceEEEEEEEeec---CeeeehhcCCC-------CcceeeEEccccC-eEEeccccceEEEEEeeccCcee
Confidence 55555555544 599999999 88887888887 9999999999986 67999999999999986542222
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc-----------------c
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE-----------------L 308 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~-----------------~ 308 (343)
..+ .+...+.+++|.|++. .++.+..||.|.+||..+.... .
T Consensus 515 Etl-----------~i~sdvl~vsfrPdG~----------elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 515 ETL-----------EIRSDVLAVSFRPDGK----------ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred eeE-----------eeccceeEEEEcCCCC----------eEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 222 2567899999999998 7999999999999996543211 0
Q ss_pred c-cc----ccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 309 L-AE----PCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 309 ~-~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
. .+ ..++.++..++ +|..+++|+....|.++.-|
T Consensus 574 ~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred eehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence 0 01 26799999999 67999999999999988643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=228.14 Aligned_cols=237 Identities=19% Similarity=0.214 Sum_probs=199.1
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce--------ee--------------------eeeccCCccccCeEEE
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV--------LL--------------------SVDENSGFHVGPISGV 121 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~--------~~--------------------~~~~~~~~h~~~v~~~ 121 (343)
...++|..|+ +..+||.|-.|..|++|.+.... .+ ...+...+|.+||.+.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3568999999 77788999999999999886210 00 1122245799999999
Q ss_pred Eec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 122 DLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 122 ~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.|+ .+.|++||.|+++++|.+++.. ..-.+.+|.. +|.++.|+| +.+|+|++.|++-++|.... ..|++.+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwdV~F~P~GyYFatas~D~tArLWs~d~---~~PlRifa 532 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWDVQFAPRGYYFATASHDQTARLWSTDH---NKPLRIFA 532 (707)
T ss_pred eecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceeeEEecCCceEEEecCCCceeeeeeccc---CCchhhhc
Confidence 999 7889999999999999999984 6666777777 999999999 99999999999999999987 77877787
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
+|- +-|.|+.|||+. +++++|+.|.+|++||..++... .+. .+|.++|.+|+|+|.+.
T Consensus 533 ghl-------sDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V-RiF----------~GH~~~V~al~~Sp~Gr--- 590 (707)
T KOG0263|consen 533 GHL-------SDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV-RIF----------TGHKGPVTALAFSPCGR--- 590 (707)
T ss_pred ccc-------cccceEEECCcc-cccccCCCCceEEEEEcCCCcEE-EEe----------cCCCCceEEEEEcCCCc---
Confidence 776 779999999986 46799999999999999986554 444 57999999999999988
Q ss_pred CCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|++|++||.|.+||.... ..++..+...|+|+.|+. +|..|++|+-|..+.+|+.
T Consensus 591 -------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 591 -------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 7999999999999998643 345555667899999998 6799999999999999963
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=197.40 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=194.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|.+|+|+| .+++|++||+|.+ .-||.-.+.+ .++...+ +|+.+|-+++|+ ++++||+++.|..
T Consensus 59 ~hkrsVRsvAwsp----~g~~La~aSFD~t-----~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 59 GHKRSVRSVAWSP----HGRYLASASFDAT-----VVIWKKEDGE-FECVATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred cchheeeeeeecC----CCcEEEEeeccce-----EEEeecCCCc-eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 3778999999999 8999999999976 4488875433 4554444 689999999999 9999999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC-C-CceEEEEEcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI-G-GGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~-~-~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
|=||.+....++........|...|..+.|+ ...|+|+|.|.+|++|+-. . .-.+...+..|.. .|.+++|++ +
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G 207 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIG 207 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCC
Confidence 9999998777777777667899999999999 6899999999999999876 2 2345666777776 899999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC-ceeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-QQSIVL 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-~~~~~~ 247 (343)
.++++++.|++++||-++. . +... +..++..+.|. + .++++++.|+.|++|--... ..|.-.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~---~-----~~~~------~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~ 270 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYT---D-----LSGM------HSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWN 270 (312)
T ss_pred ceEEEecCCcceEeeeecc---C-----cchh------cccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHH
Confidence 8999999999999998765 1 1111 12679999998 4 36899999999999965431 222111
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+.. -....|+..|++|+|+|.... .|++||+||.|++|+.
T Consensus 271 l~~-----~~~~aHe~dVNsV~w~p~~~~---------~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 271 LLA-----KKEGAHEVDVNSVQWNPKVSN---------RLASGGDDGIVNFWEL 310 (312)
T ss_pred HHH-----hhhcccccccceEEEcCCCCC---------ceeecCCCceEEEEEe
Confidence 100 012579999999999996555 8999999999999975
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=201.78 Aligned_cols=288 Identities=17% Similarity=0.151 Sum_probs=220.4
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+....|...|.++.-+| +.++++||+.|... -+|+....+. +....+|...|+++.|+ ++.+|++|..
T Consensus 58 ~tF~~H~~svFavsl~P----~~~l~aTGGgDD~A-----flW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHP----NNNLVATGGGDDLA-----FLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred eehhhcCCceEEEEeCC----CCceEEecCCCceE-----EEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCC
Confidence 34457999999999999 89999999999653 4999976553 24445799999999999 9999999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
+|.|+||+..++....... .-...+.=+.|+ +..|+.|+.||.+-+|.+.++ ...+++.+|.. ++++=+|.|
T Consensus 127 sG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~-~ct~G~f~pd 201 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNS-PCTCGEFIPD 201 (399)
T ss_pred CccEEEEEcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCC-CcccccccCC
Confidence 9999999998554332221 122355566666 889999999999999999987 36667777776 899999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc---------------------------------------
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS--------------------------------------- 208 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 208 (343)
+.+++++..||+|++|++.+ ++|+..+....+ ...+.
T Consensus 202 GKr~~tgy~dgti~~Wn~kt---g~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKT---GQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred CceEEEEecCceEEEEecCC---CceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99999999999999999999 777776652221 00000
Q ss_pred ------cCeEEEEEcCCC--CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 209 ------GMIHSVDIHPSR--KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 209 ------~~i~~v~~~p~~--~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
..+.||.+.|.. -.++|+|+-||+|.|||+......... .|+.+|..+.|.+ ..
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------------~he~~V~~l~w~~-t~----- 339 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC------------EHEDGVTKLKWLN-TD----- 339 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec------------cCCCceEEEEEcC-cc-----
Confidence 112222222221 136788999999999999874433332 4899999999998 45
Q ss_pred CCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+|++++.+|.|+.||.... ..++..+..+|..|.++| +++.|++++++....||.-|
T Consensus 340 -----~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 -----YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----hheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 7999999999999998643 344445567999999999 56999999999999998754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=213.28 Aligned_cols=264 Identities=15% Similarity=0.160 Sum_probs=210.6
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
+.|.++.+ +.+.+++|+.|++ +++||..+ ..++ ...+|.|.|.|+.|. ...+++|++|.+|++|
T Consensus 198 kgVYClQY------DD~kiVSGlrDnT-----ikiWD~n~---~~c~~~L~GHtGSVLCLqyd-~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 198 KGVYCLQY------DDEKIVSGLRDNT-----IKIWDKNS---LECLKILTGHTGSVLCLQYD-ERVIVSGSSDSTVRVW 262 (499)
T ss_pred CceEEEEe------cchhhhcccccCc-----eEEecccc---HHHHHhhhcCCCcEEeeecc-ceEEEecCCCceEEEE
Confidence 44566554 4466899999976 66999954 3333 335899999999998 5699999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
|+++++++... -.|...|..+.|+.+++++++.|.++.+||+.... .+++++.+|.. .|..+.|.. .++++++
T Consensus 263 Dv~tge~l~tl---ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-aVNvVdfd~-kyIVsAS 337 (499)
T KOG0281|consen 263 DVNTGEPLNTL---IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFDD-KYIVSAS 337 (499)
T ss_pred eccCCchhhHH---hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-heeeecccc-ceEEEec
Confidence 99987766544 25889999999999999999999999999997643 34455667766 799999875 4899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|.+|++|+..+ .+.+.++.+|. ..|.|+.+.. .++++|++|.+|++||+..+..... +
T Consensus 338 gDRTikvW~~st---~efvRtl~gHk-------RGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRv-L------- 396 (499)
T KOG0281|consen 338 GDRTIKVWSTST---CEFVRTLNGHK-------RGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRV-L------- 396 (499)
T ss_pred CCceEEEEeccc---eeeehhhhccc-------ccceehhccC---eEEEecCCCceEEEEeccccHHHHH-H-------
Confidence 999999999999 88888888776 5588887753 5788999999999999998655433 3
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc-----------ccccccccceeeecCCC
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE-----------LLAEPCAINSFDIDPQN 324 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~-----------~~~~~~~i~s~~~~~~~ 324 (343)
++|+.-|.++.|+. . .+++|+.||+|++|+....... +..+...|-.+.|+.
T Consensus 397 ---eGHEeLvRciRFd~--k----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-- 459 (499)
T KOG0281|consen 397 ---EGHEELVRCIRFDN--K----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-- 459 (499)
T ss_pred ---hchHHhhhheeecC--c----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--
Confidence 68999999999983 2 6899999999999997533221 112235788888886
Q ss_pred CCeeEEccCCceEEEEe
Q 019258 325 PSDVICSLEWESIAIVS 341 (343)
Q Consensus 325 ~~~l~~~~~~~~i~~~~ 341 (343)
..+++.+.+..|-||+
T Consensus 460 -fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 460 -FQIISSSHDDTILIWD 475 (499)
T ss_pred -eEEEeccCCCeEEEEE
Confidence 7888888999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=197.98 Aligned_cols=235 Identities=16% Similarity=0.168 Sum_probs=187.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
..|+++|+.++|+ ++..|++|+.|..|.+|++. +.+..... ++|++.|..+.|. +..++++|.|.+|+.||.+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 5689999999999 99999999999999999976 33333333 3799999999999 9999999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
+++..++ ...|.. -+..+.-.. ...+.+++.|+++++||.|+ .++++++... .+++++.|...+.
T Consensus 121 tG~~~rk-~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~---k~~~~t~~~k--------yqltAv~f~d~s~ 187 (338)
T KOG0265|consen 121 TGKRIRK-HKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK---KEAIKTFENK--------YQLTAVGFKDTSD 187 (338)
T ss_pred cceeeeh-hccccc-eeeecCccccCCeEEEecCCCceEEEEeecc---cchhhccccc--------eeEEEEEeccccc
Confidence 9964444 455655 577776433 55677888899999999999 6777776422 6699999998876
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+ .+|+-|+.|++||+|+......+ .+|...|..|..+|++. ++.+-+.|.++++|+.
T Consensus 188 qv-~sggIdn~ikvWd~r~~d~~~~l-----------sGh~DtIt~lsls~~gs----------~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 188 QV-ISGGIDNDIKVWDLRKNDGLYTL-----------SGHADTITGLSLSRYGS----------FLLSNSMDNTVRVWDV 245 (338)
T ss_pred ce-eeccccCceeeeccccCcceEEe-----------ecccCceeeEEeccCCC----------ccccccccceEEEEEe
Confidence 65 68999999999999986554443 57999999999999988 7999999999999985
Q ss_pred CCC-c----cccc-cc----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 302 GEE-P----FELL-AE----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 302 ~~~-~----~~~~-~~----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..- + ..+. .+ ........|+| ++.++.+|+.|..+|+|+
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 321 1 1111 11 13456678899 679999999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=221.62 Aligned_cols=242 Identities=12% Similarity=0.174 Sum_probs=202.3
Q ss_pred CcccceeeEE-ecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCC-ccCCCCCCeeEEEcc--CCCeEEEEcC
Q 019258 16 PQSKYIDAVR-WLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPH-SQWTPPTRISSLSTS--HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~-w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~-~~~~~~~~v~~v~~~--~~~~l~~~s~ 90 (343)
.|.+.|-++. |+. +.+|+|||.|+. +++|.+.++.. ..++ ...+|.+.|.+++++ ....|+++|.
T Consensus 363 GH~e~vlSL~~~~~-----g~llat~sKD~s-----vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSS-----GDLLATGSKDKS-----VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred Cchhheeeeeeccc-----CcEEEEecCCce-----EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC
Confidence 5788888888 544 689999999975 67999844322 2222 235789999999999 7789999999
Q ss_pred CCcEEEEEccCcee----eee--eccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE
Q 019258 91 SGSLHVLSSAMQVL----LSV--DENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 91 dg~v~v~~~~~~~~----~~~--~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 162 (343)
|+++++|++...++ +.+ ......|...|++++++ .+.+++||.|.+.++|++++. ....++.+|.. ++.|
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~R-Gvw~ 510 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTR-GVWC 510 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCcc-ceEE
Confidence 99999999984211 111 12345699999999998 788999999999999999977 57888888888 8999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|++ .+.++|++.|++|+||.+.. ..++.+|.+|. ..|..+.|-.++.. +++++.||-|++|++++.
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~---fSClkT~eGH~-------~aVlra~F~~~~~q-liS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSIST---FSCLKTFEGHT-------SAVLRASFIRNGKQ-LISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEeccccceeEeccCCceEEEEEecc---ceeeeeecCcc-------ceeEeeeeeeCCcE-EEeccCCCcEEEEeccch
Confidence 99999 88999999999999999999 89999999887 78999999988875 468999999999999997
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++...+ ..|++.||+++-+|... .+++|+.||.|.+|+-
T Consensus 580 eC~~tl-----------D~H~DrvWaL~~~~~~~----------~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 580 ECEMTL-----------DAHNDRVWALSVSPLLD----------MFVTGGGDGRIIFWKD 618 (775)
T ss_pred hhhhhh-----------hhccceeEEEeecCccc----------eeEecCCCeEEEEeec
Confidence 766554 57999999999999877 7999999999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=214.38 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=222.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc-CCCeEEEEcCC-CcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS-HQSLVAASTLS-GSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l~~~s~d-g~v~ 95 (343)
.+|.+.+++| ..+.||+|-..+. ..++.+++ ..++..+... .+|..+.|+ .++.|+.|+.. |.+-
T Consensus 266 ~kvtaa~fH~----~t~~lvvgFssG~-----f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 266 SKVTAAAFHK----GTNLLVVGFSSGE-----FGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred cceeeeeccC----CceEEEEEecCCe-----eEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 6788888888 6788888866554 44888866 3344444443 689999999 89999999874 8999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||+.+...-+.- ..+|...+++++++ |+.+++|+.||.|++||..++- +..++..|.+ .|+.++|+. ++.++
T Consensus 334 VweWqsEsYVlK---QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts-~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 334 VWEWQSESYVLK---QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTS-GVTAVQFTARGNVLL 408 (893)
T ss_pred EEEeeccceeee---ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCC-ceEEEEEEecCCEEE
Confidence 999985433322 23699999999999 8899999999999999999984 6666666776 899999999 89999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-cEEEEEccCCceeeeeecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-TVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-~v~iwd~~~~~~~~~~~~~~ 251 (343)
+.+.||+|+.||+.. ....++|..... ....|++.+|.|. ++.+|+.|. .|++|++.++ +.+..+
T Consensus 409 ssSLDGtVRAwDlkR---YrNfRTft~P~p------~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTG-qllDiL--- 474 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKR---YRNFRTFTSPEP------IQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTG-QLLDIL--- 474 (893)
T ss_pred EeecCCeEEeeeecc---cceeeeecCCCc------eeeeEEEEcCCCC-EEEeeccceEEEEEEEeecC-eeeehh---
Confidence 999999999999988 777777776553 5588999999986 555677766 4999999985 445555
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.+|+++|.++.|+|++. .|+|+|.|.+|++|+--.. ..|.+....-+.++.+.| +|..|+
T Consensus 475 -------sGHEgPVs~l~f~~~~~----------~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~ela 536 (893)
T KOG0291|consen 475 -------SGHEGPVSGLSFSPDGS----------LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELA 536 (893)
T ss_pred -------cCCCCcceeeEEccccC----------eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEE
Confidence 78999999999999988 7999999999999996433 455566667899999999 679999
Q ss_pred EccCCceEEEEeC
Q 019258 330 CSLEWESIAIVSR 342 (343)
Q Consensus 330 ~~~~~~~i~~~~~ 342 (343)
.++-+|-|.+|+.
T Consensus 537 VaTldgqItf~d~ 549 (893)
T KOG0291|consen 537 VATLDGQITFFDI 549 (893)
T ss_pred EEEecceEEEEEh
Confidence 9999999999973
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=209.01 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=197.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|+..|-++.+.. +.+++||.|.+ +++||+...+.. ...+.|...|..+.|+ ++++++++.|.++.
T Consensus 235 GHtGSVLCLqyd~------rviisGSSDsT-----vrvWDv~tge~l--~tlihHceaVLhlrf~-ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 235 GHTGSVLCLQYDE------RVIVSGSSDST-----VRVWDVNTGEPL--NTLIHHCEAVLHLRFS-NGYMVTCSKDRSIA 300 (499)
T ss_pred cCCCcEEeeeccc------eEEEecCCCce-----EEEEeccCCchh--hHHhhhcceeEEEEEe-CCEEEEecCCceeE
Confidence 4666677776654 58999999965 779999664332 3345778899999998 78899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
+||+.....+.+.+...+|.+.|+.++|+.+++++++.|.++++|++.+. ...+++.+|.. +|-|+.|. +..+++|+
T Consensus 301 VWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~-efvRtl~gHkR-GIAClQYr-~rlvVSGS 377 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKR-GIACLQYR-DRLVVSGS 377 (499)
T ss_pred EEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccce-eeehhhhcccc-cceehhcc-CeEEEecC
Confidence 99998665666666667899999999999999999999999999999998 57777788876 78888765 57899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|.+|++||... +.++..+++|+ .-|.|+.|+.. -+++|+.||+|++||+.....|.....- ...
T Consensus 378 SDntIRlwdi~~---G~cLRvLeGHE-------eLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~--~Cl 442 (499)
T KOG0281|consen 378 SDNTIRLWDIEC---GACLRVLEGHE-------ELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPAST--LCL 442 (499)
T ss_pred CCceEEEEeccc---cHHHHHHhchH-------HhhhheeecCc---eeeeccccceEEEEecccccCCcccccc--hHH
Confidence 999999999999 88888888887 78999999864 3689999999999999876655322110 000
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
-....|.+.|..++|.. . ++++++.|.+|.+|+-...+
T Consensus 443 ~~lv~hsgRVFrLQFD~---f---------qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQFDE---F---------QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred HhhhhccceeEEEeecc---e---------EEEeccCCCeEEEEEcCCCC
Confidence 01145888999999973 3 79999999999999975443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=193.32 Aligned_cols=277 Identities=13% Similarity=0.097 Sum_probs=204.1
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|+.+.|++|+|+| ....|+.+|||+. |++++++.. .+...+.|.+++.+++|.+....++|+.||.|
T Consensus 10 npP~d~IS~v~f~~----~~~~LLvssWDgs-----lrlYdv~~~---~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP----SSSDLLVSSWDGS-----LRLYDVPAN---SLKLKFKHGAPLLDCAFADESTIVTGGLDGQV 77 (323)
T ss_pred CCChhceeeEEEcC----cCCcEEEEeccCc-----EEEEeccch---hhhhheecCCceeeeeccCCceEEEeccCceE
Confidence 35678999999998 5556667779975 889999663 45667889999999999988899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
+++|+...+...+. .|..+|.++... .+.+++||.|++|++||.++. .....++... .|.++... ++.|+
T Consensus 78 r~~Dln~~~~~~ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d~~k--kVy~~~v~-g~~Lv 149 (323)
T KOG1036|consen 78 RRYDLNTGNEDQIG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFDQGK--KVYCMDVS-GNRLV 149 (323)
T ss_pred EEEEecCCcceeec----cCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccccCc--eEEEEecc-CCEEE
Confidence 99999966555443 599999999999 889999999999999999975 3444444444 58888754 56788
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc----eeeeee
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ----QSIVLS 248 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~----~~~~~~ 248 (343)
.|+.|..+.+||+|. .....+..... -+ .++.||++.|++... ++++-||+|.+=.+...+ ....+.
T Consensus 150 Vg~~~r~v~iyDLRn---~~~~~q~reS~-lk----yqtR~v~~~pn~eGy-~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRN---LDEPFQRRESS-LK----YQTRCVALVPNGEGY-VVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred EeecCceEEEEEccc---ccchhhhcccc-ce----eEEEEEEEecCCCce-EEEeecceEEEEccCCchHHhhhceeEE
Confidence 899999999999998 33322211110 01 679999999977654 678999998876665431 111221
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
..-.... ...---+|++|+|||-.. .|+||+.||.|.+||...+ ..++..-+..|.+++++. +|.
T Consensus 221 CHr~~~~--~~~~~yPVNai~Fhp~~~----------tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~ 287 (323)
T KOG1036|consen 221 CHRLSEK--DTEIIYPVNAIAFHPIHG----------TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGS 287 (323)
T ss_pred eeecccC--CceEEEEeceeEeccccc----------eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCC
Confidence 1000000 011124899999999876 6999999999999998533 334333357799999997 678
Q ss_pred eeEEccC
Q 019258 327 DVICSLE 333 (343)
Q Consensus 327 ~l~~~~~ 333 (343)
.|+-|++
T Consensus 288 ~LAia~s 294 (323)
T KOG1036|consen 288 LLAIASS 294 (323)
T ss_pred eEEEEec
Confidence 8887763
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=221.04 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=185.7
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc----------------------------ee--e------------
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ----------------------------VL--L------------ 105 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~----------------------------~~--~------------ 105 (343)
.|.+.|.+++|+ ++.+||+|+.||.|+||.+... .. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 688999999999 9999999999999999988530 00 0
Q ss_pred ---------------eeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 106 ---------------SVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 106 ---------------~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.......+|.+.|.++.|+ .+.|+++|.|.||+||++... .++.++.+.+ .|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~Hnd--fVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSHND--FVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc-ceeeEEecCC--eeEEEEecccC
Confidence 0111234689999999999 999999999999999999987 5888876555 599999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.++|++|+.|+.||||++.. ..+....... ..|++++|.|+|... +.|+.+|.+++|+.+........
T Consensus 422 DryFiSGSLD~KvRiWsI~d----~~Vv~W~Dl~-------~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD----KKVVDWNDLR-------DLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCcEeecccccceEEeecCc----CeeEeehhhh-------hhheeEEeccCCceE-EEEEeccEEEEEEccCCeEEEee
Confidence 88999999999999999976 4443333222 679999999998765 68999999999999875443332
Q ss_pred ecC-CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-ccccc---ccccceeeecC
Q 019258 248 SGV-GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAE---PCAINSFDIDP 322 (343)
Q Consensus 248 ~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~---~~~i~s~~~~~ 322 (343)
... ..... ..|. .|++++|.|..+. .++..|+|..|+|++...... ..+.. ...-.+-.++.
T Consensus 490 ~I~~~~~Kk---~~~~-rITG~Q~~p~~~~---------~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 490 HIRLHNKKK---KQGK-RITGLQFFPGDPD---------EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred eEeeccCcc---ccCc-eeeeeEecCCCCC---------eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 211 11111 2233 8999999999886 799999999999999843322 22221 12222333444
Q ss_pred CCCCeeEEccCCceEEEEeC
Q 019258 323 QNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|++||||++|--||+|+.
T Consensus 557 -Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 557 -DGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred -CCCEEEEeecCceEEEEeC
Confidence 4699999999999999984
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=218.95 Aligned_cols=278 Identities=12% Similarity=0.127 Sum_probs=214.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-CccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP-HSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..+.+|-.++|+| ...+++++-..+. |++||.-- ..+ ....+|.|+|..+.|+ ...++++|+.|-.
T Consensus 7 skSsRvKglsFHP----~rPwILtslHsG~-----IQlWDYRM---~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHP----KRPWILTSLHSGV-----IQLWDYRM---GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccccceecCC----CCCEEEEeecCce-----eeeehhhh---hhHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence 4667899999999 7889998877653 77998832 222 2335799999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|+||++...+.+. ...+|-.-|..+.|+ -..++|+|+|-+|++|+..+++ +..+..+|.- .|.|..|+| ...
T Consensus 75 IkVWnYk~rrclf---tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnH-YVMcAqFhptEDl 149 (1202)
T KOG0292|consen 75 IKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNH-YVMCAQFHPTEDL 149 (1202)
T ss_pred EEEEecccceehh---hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCce-EEEeeccCCccce
Confidence 9999998544332 234799999999999 7899999999999999999985 6666666665 799999999 999
Q ss_pred EEEEeCCCcEEEEEccc---c--CCC-------------------CCeeE--EecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 171 FVTGGFGYGLQWWDLRR---A--GSG-------------------GPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~---~--~~~-------------------~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+++++.|-+||+||+.. + .++ ..+.. +.+|. ..|+-++|||.-+ ++
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-------RGVNwaAfhpTlp-li 221 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-------RGVNWAAFHPTLP-LI 221 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-------cccceEEecCCcc-eE
Confidence 99999999999999742 0 011 00111 22333 5699999999865 67
Q ss_pred EEEecCCcEEEEEccCCceee--eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSI--VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++|++|+.|++|-+.. .+.. ... .+|.+.|.++.|||... .++|.|+|++|++||..
T Consensus 222 VSG~DDRqVKlWrmne-tKaWEvDtc----------rgH~nnVssvlfhp~q~----------lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNE-TKAWEVDTC----------RGHYNNVSSVLFHPHQD----------LILSNSEDKSIRVWDMT 280 (1202)
T ss_pred EecCCcceeeEEEecc-ccceeehhh----------hcccCCcceEEecCccc----------eeEecCCCccEEEEecc
Confidence 8999999999998865 2222 223 67999999999999876 89999999999999986
Q ss_pred CC--cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ...+..+.....-++.||. -.|++++.|..+.+|+
T Consensus 281 kRt~v~tfrrendRFW~laahP~--lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPE--LNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCC--cceeeeecCCceEEEE
Confidence 43 3344456778889999994 4556666666666654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=229.85 Aligned_cols=240 Identities=12% Similarity=0.150 Sum_probs=187.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~ 139 (343)
..|.+.|.+++|+ ++++|++|+.|+.|+||++... ...........+...+.++.|+ +..+++++.||+|++
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 4578899999999 8899999999999999997521 1000000011244678999997 678999999999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
||+.+++ ....+..|.. .|++++|++ +..|++|+.|++|++||++. +..+..+..+ ..+.++.|+
T Consensus 560 Wd~~~~~-~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---~~~~~~~~~~--------~~v~~v~~~ 626 (793)
T PLN00181 560 WDVARSQ-LVTEMKEHEK-RVWSIDYSSADPTLLASGSDDGSVKLWSINQ---GVSIGTIKTK--------ANICCVQFP 626 (793)
T ss_pred EECCCCe-EEEEecCCCC-CEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---CcEEEEEecC--------CCeEEEEEe
Confidence 9999874 5555566765 799999997 57899999999999999988 6666666532 458999997
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
+....++++|+.||.|++||++....+.... .+|...|..+.|. ++. .++++|.|++|+
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~----------~~h~~~V~~v~f~-~~~----------~lvs~s~D~~ik 685 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTM----------IGHSKTVSYVRFV-DSS----------TLVSSSTDNTLK 685 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEe----------cCCCCCEEEEEEe-CCC----------EEEEEECCCEEE
Confidence 6545678899999999999999865555554 5799999999997 444 799999999999
Q ss_pred EEecCCC--------cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 298 VVEQGEE--------PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 298 ~~~~~~~--------~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|+.... ...+..+...++.+.+++ ++.+|++|++++.+++|+.
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEEC
Confidence 9997521 122233346788899998 4689999999999999974
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=212.12 Aligned_cols=279 Identities=19% Similarity=0.165 Sum_probs=224.2
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+..-.|-..|.+++++. +...+++|+.+ ++++|+... .+|+.+++-. .+.+..|. .+.++++|..
T Consensus 367 i~~~GHR~dVRsl~vS~----d~~~~~Sga~~------SikiWn~~t---~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS----DSILLASGAGE------SIKIWNRDT---LKCIRTITCG-YILASKFVPGDRYIVLGTK 432 (888)
T ss_pred eeeccchhheeEEEeec----CceeeeecCCC------cEEEEEccC---cceeEEeccc-cEEEEEecCCCceEEEecc
Confidence 33445677888899988 77777777655 588999954 5666666554 78899999 7788999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-----Cc--eEE-----EEEcCCC
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG-----GG--EFK-----RVYDGNG 156 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-----~~--~~~-----~~~~~~~ 156 (343)
+|.+.+||+.....+ +...+|.+.+.+++.. +..++++|.|.+|++||..- +. +.. ++++-.+
T Consensus 433 ~Gel~vfdlaS~~l~---Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 433 NGELQVFDLASASLV---ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred CCceEEEEeehhhhh---hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999999844333 3334799999999998 88999999999999999732 11 111 2233333
Q ss_pred ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.|.|++++| +.+++.+=.|+++++|=+.+ -+-..++.+|. =||.|++.+|+. .++++|+.|..|++
T Consensus 510 --dvL~v~~Spdgk~LaVsLLdnTVkVyflDt---lKFflsLYGHk-------LPV~smDIS~DS-klivTgSADKnVKi 576 (888)
T KOG0306|consen 510 --DVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHK-------LPVLSMDISPDS-KLIVTGSADKNVKI 576 (888)
T ss_pred --cEEEEEEcCCCcEEEEEeccCeEEEEEecc---eeeeeeecccc-------cceeEEeccCCc-CeEEeccCCCceEE
Confidence 499999999 66677777799999998877 44445566665 789999999986 57789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCccccccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPC 313 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~ 313 (343)
|-+.-+.+...+. +|...|.+|.|.|... .+++||.||.++.||.. +....+..+..
T Consensus 577 WGLdFGDCHKS~f-----------AHdDSvm~V~F~P~~~----------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 577 WGLDFGDCHKSFF-----------AHDDSVMSVQFLPKTH----------LFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred eccccchhhhhhh-----------cccCceeEEEEcccce----------eEEEecCcceEEeechhhhhhheeeccchh
Confidence 9998888777765 6999999999999766 79999999999999753 55667777789
Q ss_pred ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 314 AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 314 ~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.|.++++.| +|.++++++.|..|++|.+
T Consensus 636 ev~cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 636 EVWCLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence 999999999 7899999999999999976
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=205.63 Aligned_cols=293 Identities=15% Similarity=0.142 Sum_probs=215.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCC--CCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWT--PPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~--~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
+++.|++++.-| .+.+|+|||+|.+ +++||+..- ..+..+.++. ....|+++.|+ .++.|++.+..-
T Consensus 166 gtk~Vsal~~Dp----~GaR~~sGs~Dy~-----v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 166 GTKIVSALAVDP----SGARFVSGSLDYT-----VKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred CceEEEEeeecC----CCceeeeccccce-----EEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 557899999999 8999999999965 669999542 2222233333 23579999999 888888888888
Q ss_pred cEEEEEccCceeeee---------eccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcC----CC
Q 019258 93 SLHVLSSAMQVLLSV---------DENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDG----NG 156 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~---------~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~----~~ 156 (343)
..+|+|-...+-+.. ....++|...+++.+|+ .+.|++++.||++++||+.+.+....++.. ..
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 899999764333322 22346799999999999 778999999999999999886545555432 22
Q ss_pred ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
...++.++|++ +..+++|..||.|.+||.+. ...++...++..+... ..|+||.|+++|. +|++-+.|+++++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~-~~v~p~~~vk~AH~~g----~~Itsi~FS~dg~-~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS-RTVRPVMKVKDAHLPG----QDITSISFSYDGN-YLLSRGFDDTLKV 390 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCC-cccccceEeeeccCCC----CceeEEEeccccc-hhhhccCCCceee
Confidence 34689999999 88899999999999999865 1123333343222111 4699999999986 4578899999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe------cCCeEEEEecC--CCccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS------EDGILAVVEQG--EEPFE 307 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s------~dg~i~~~~~~--~~~~~ 307 (343)
||+|+..+|+..... ....-+-..++|+|+.. .+++|+ .-|+|..++.. +....
T Consensus 391 WDLrq~kkpL~~~tg--------L~t~~~~tdc~FSPd~k----------li~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTG--------LPTPFPGTDCCFSPDDK----------LILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred eeccccccchhhhcC--------CCccCCCCccccCCCce----------EEEecccccCCCCCceEEEEeccceeeEEE
Confidence 999998887765411 11233557899999987 677764 33578888764 22333
Q ss_pred ccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 308 LLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 308 ~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+......|..+.|||.. +.++.|+.||.++||.-|
T Consensus 453 i~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ecCCCceEEEEeecchh-hheeeecCCCceEEEECc
Confidence 33345789999999965 888888889999999765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=199.62 Aligned_cols=293 Identities=17% Similarity=0.114 Sum_probs=209.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|++|+++| ++.+|+|++.|++ +.++|=.+.+....+ ..-.|.|.|.++.|+ +..++++.+.|.+
T Consensus 188 ~HskFV~~VRysP----DG~~Fat~gsDgk-----i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP----DGSRFATAGSDGK-----IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred ccccceeeEEECC----CCCeEEEecCCcc-----EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 4778999999999 8999999999975 458876543332222 245799999999999 9999999999999
Q ss_pred EEEEEccCceee----------------------------------------eeeccCCccccCeEEEEec--CCEEEEE
Q 019258 94 LHVLSSAMQVLL----------------------------------------SVDENSGFHVGPISGVDLT--GSECVSV 131 (343)
Q Consensus 94 v~v~~~~~~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~--~~~~~s~ 131 (343)
++|||+.....+ .+.....+|...|+++..+ ++.|++|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 999998532111 1112235688999999999 8999999
Q ss_pred eCCCcEEEEECCCCceEEEEE-cCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC---------CCCeeEEeccc
Q 019258 132 GEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS---------GGPVLQFKGNF 201 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~ 201 (343)
+.||.|.-||..++. .-++. ..|.. .|.+++-.....+++.+.|.++++.++...+- .+|. .+....
T Consensus 339 syDG~I~~W~~~~g~-~~~~~g~~h~n-qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~ 415 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGT-SDRLAGKGHTN-QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLS 415 (603)
T ss_pred ccCceEEEEecCCcc-ccccccccccc-eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcC
Confidence 999999999998874 33333 34444 78888877667788888888888887632000 0000 000000
Q ss_pred C-----------------C------------------------------------------------CCCcccCeEEEEE
Q 019258 202 G-----------------S------------------------------------------------QGKASGMIHSVDI 216 (343)
Q Consensus 202 ~-----------------~------------------------------------------------~~~~~~~i~~v~~ 216 (343)
+ . ...+.++|+++++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 0 0 0011266777777
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+|++. +||+|...+.|.+||..+.+...... ..|.+.|.+|+|+|++. +++++|-|-+|
T Consensus 496 Spd~~-yla~~Da~rkvv~yd~~s~~~~~~~w----------~FHtakI~~~aWsP~n~----------~vATGSlDt~V 554 (603)
T KOG0318|consen 496 SPDGA-YLAAGDASRKVVLYDVASREVKTNRW----------AFHTAKINCVAWSPNNK----------LVATGSLDTNV 554 (603)
T ss_pred CCCCc-EEEEeccCCcEEEEEcccCceeccee----------eeeeeeEEEEEeCCCce----------EEEeccccceE
Confidence 77765 34667777777777776644433333 45999999999999988 89999999999
Q ss_pred EEEecCCCcc--cccc-cccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEEPF--ELLA-EPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~~~--~~~~-~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.+|+-..... .... +...|+++.|-.+ ..|++++.|..|.+|+-+
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wlde--~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLDE--STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEecC--ceEEeccCcceeEEeccc
Confidence 9998754432 2222 2456999999853 799999999999999853
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=201.89 Aligned_cols=282 Identities=11% Similarity=0.014 Sum_probs=218.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|.+.|=-+.|+| ++++|||+|.|.+.. +|.+..+...++. +-..|..+|.-+.|+ ++++|++++.+..
T Consensus 222 ~htdEVWfl~FS~----nGkyLAsaSkD~Tai-----iw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 222 DHTDEVWFLQFSH----NGKYLASASKDSTAI-----IWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred hCCCcEEEEEEcC----CCeeEeeccCCceEE-----EEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 5888999999999 999999999997644 8888544444443 335788999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+.+||+..++.....+. +|...+.+++|. +..+++|+.|+++.+||++... ....++.....|.+++..+ +..
T Consensus 293 ~~lwDv~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeeccCCcchhhhhccc--CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcE
Confidence 99999987665544432 355688999998 8899999999999999998752 3333333333699999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
+++.+.|..|++++.+. ......+. .+ .+|+++..+.++.. +++-=.+..+.+||+.....+..+.
T Consensus 369 vl~v~~d~~i~l~~~e~---~~dr~lis-e~-------~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~~lv~kY~-- 434 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREA---RVDRGLIS-EE-------QPITSFSISKDGKL-ALVNLQDQEIHLWDLEENKLVRKYF-- 434 (519)
T ss_pred EEEEecccceeeechhh---hhhhcccc-cc-------CceeEEEEcCCCcE-EEEEcccCeeEEeecchhhHHHHhh--
Confidence 99999999999999876 22221121 11 67999999998865 4566788999999998766665655
Q ss_pred CCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcc-cccccccccceeeecCCCCC
Q 019258 251 GTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPF-ELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 251 ~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~-~~~~~~~~i~s~~~~~~~~~ 326 (343)
+|.. -+..=+|-..+.. +++|||+|+.|++|+.. ..+. ++-.+...||.++++|.++.
T Consensus 435 ---------Ghkq~~fiIrSCFgg~~~~---------fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 435 ---------GHKQGHFIIRSCFGGGNDK---------FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred ---------cccccceEEEeccCCCCcc---------eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 3443 3444556555544 89999999999999875 3344 44455689999999999999
Q ss_pred eeEEccCCceEEEEeC
Q 019258 327 DVICSLEWESIAIVSR 342 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~~ 342 (343)
.+++|+||++|+||..
T Consensus 497 m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGP 512 (519)
T ss_pred HhhccCCCCeEEEecC
Confidence 9999999999999963
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=202.40 Aligned_cols=284 Identities=16% Similarity=0.213 Sum_probs=212.0
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc--------CCCeEEEEcCCC
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS--------HQSLVAASTLSG 92 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~--------~~~~l~~~s~dg 92 (343)
..+.-.| ..++++.+=.+.++. .|++|=..... .+.+...+-.+..-.|++|. .++++|.|+.|.
T Consensus 129 de~~V~p----sDnlIl~ar~eddvs--~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp 202 (463)
T KOG0270|consen 129 DEEQVKP----SDNLILCARNEDDVS--YLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP 202 (463)
T ss_pred ccceecc----CCcEEEEeeccCCce--EEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc
Confidence 3444555 556666665554444 35555543222 22222223334455677765 467999999999
Q ss_pred cEEEEEccCceee----eee--------------ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 93 SLHVLSSAMQVLL----SVD--------------ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 93 ~v~v~~~~~~~~~----~~~--------------~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
.|.|||+.-...+ .+- ....+|+..|.++.|+ .+.|+|||.|.+|++||+.+++ +...
T Consensus 203 ~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s 281 (463)
T KOG0270|consen 203 EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSS 281 (463)
T ss_pred eeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-ccee
Confidence 9999998611111 110 0122588888999998 7899999999999999999995 7777
Q ss_pred EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 152 YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
+..|.. .|.+++|++ +..+++|++|+++++.|.|. +......++.. +.|-.++|+|...+.+++++.
T Consensus 282 ~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~--~~~s~~~wk~~--------g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 282 ITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRD--PSNSGKEWKFD--------GEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred hhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccC--ccccCceEEec--------cceEEEEecCCCceeEEEecC
Confidence 666665 899999999 88999999999999999996 34433333322 679999999999999999999
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccc
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFEL 308 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~ 308 (343)
||+|+-+|+|+...|.-.. ++|.++|.+|.+++..+. .++++|.|+.+.+|+.... +..+
T Consensus 351 dG~v~~~D~R~~~~~vwt~----------~AHd~~ISgl~~n~~~p~---------~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTL----------KAHDDEISGLSVNIQTPG---------LLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CceEEeeecCCCCCceeEE----------EeccCCcceEEecCCCCc---------ceeeccccceEEEEeecCCCCccc
Confidence 9999999999998888777 789999999999999997 8999999999999997533 2222
Q ss_pred cccc---cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 309 LAEP---CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 309 ~~~~---~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.... ....++...|+....++.|+..+.++||+.
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 2221 346778888877789999999999999975
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=209.95 Aligned_cols=275 Identities=15% Similarity=0.207 Sum_probs=218.8
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
+.+=+.|+. .+.++.|... .+.+|+..... ...+..+. ...|+++.|+ ++.+|++|..+|.|.|||
T Consensus 179 Y~nlldWss-----~n~laValg~------~vylW~~~s~~-v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 179 YLNLLDWSS-----ANVLAVALGQ------SVYLWSASSGS-VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred hhhHhhccc-----CCeEEEEecc------eEEEEecCCCc-eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence 344556766 5567777643 36799986543 22244444 7899999999 999999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d 177 (343)
..+...+.... ..|...|.+++|++..+.+|+.|+.|..+|++........+..|.. .|..++|++ ..++++|+.|
T Consensus 246 ~~~~k~~~~~~--~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-eVCgLkws~d~~~lASGgnD 322 (484)
T KOG0305|consen 246 VKEQKKTRTLR--GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-EVCGLKWSPDGNQLASGGND 322 (484)
T ss_pred hhhcccccccc--CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc-eeeeeEECCCCCeeccCCCc
Confidence 88544333222 1289999999999999999999999999999986555554555665 899999999 9999999999
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
+.+.|||... .+++..+..|. +.|.+++|+|-.+.+||+|+ .|++|++||..++.......
T Consensus 323 N~~~Iwd~~~---~~p~~~~~~H~-------aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd------- 385 (484)
T KOG0305|consen 323 NVVFIWDGLS---PEPKFTFTEHT-------AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD------- 385 (484)
T ss_pred cceEeccCCC---ccccEEEeccc-------eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------
Confidence 9999999977 78888888776 88999999999999999966 59999999999865544433
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEE--ecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEc
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC--SEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~--s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~ 331 (343)
-...|..|.|++.... |+++ -.++.|.+|+... ....+..+...|..++++| +|..+++|
T Consensus 386 -----tgsQVcsL~Wsk~~kE----------i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~ 449 (484)
T KOG0305|consen 386 -----TGSQVCSLIWSKKYKE----------LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTG 449 (484)
T ss_pred -----cCCceeeEEEcCCCCE----------EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEe
Confidence 4578999999999874 4544 4556789998753 3456666677899999999 68999999
Q ss_pred cCCceEEEEeCC
Q 019258 332 LEWESIAIVSRP 343 (343)
Q Consensus 332 ~~~~~i~~~~~~ 343 (343)
+.|+.+++|+-|
T Consensus 450 a~DETlrfw~~f 461 (484)
T KOG0305|consen 450 AADETLRFWNLF 461 (484)
T ss_pred cccCcEEecccc
Confidence 999999999853
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=215.63 Aligned_cols=246 Identities=17% Similarity=0.226 Sum_probs=197.7
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|...|+.++|+| ++.++++++.|++ |++|+++.+ ........+|...|++++|+ .++++++|+.|++
T Consensus 200 ~~h~~~v~~~~fs~----d~~~l~s~s~D~t-----iriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP----DGSYLLSGSDDKT-----LRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cccccceeeeEECC----CCcEEEEecCCce-----EEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 35888999999999 8889999999975 889999332 12223334899999999999 7789999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCcc-ceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLV-GFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~-~v~~~~~~~-~ 168 (343)
|+||++...+..... .+|.++|++++++ +..+++++.|+.|++||+.++.. +......+... .+++++|+| +
T Consensus 270 vriWd~~~~~~~~~l---~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKL---KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EEEEeccCCeEEEee---eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence 999999975554444 3799999999999 89999999999999999999842 34455555553 589999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.++++++.|+.+++||++. ...+..+.++.... ..+.+....+.+. .+++|+.|+.|++||+.+... ....
T Consensus 347 ~~ll~~~~d~~~~~w~l~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~-~~~l 417 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRS---GKSVGTYTGHSNLV----RCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGI-LQRL 417 (456)
T ss_pred cEEEEecCCCeEEEEEccC---CcceeeecccCCcc----eeEecccccCCCC-eEEEEeCCceEEEEeCCccch-hhhh
Confidence 8999999999999999998 77787887776321 2455556667665 457999999999999987433 3333
Q ss_pred cCCCCcccccCCc-cccEEEEEEeecCCCCcCCCCCccceEEEe--cCCeEEEEecC
Q 019258 249 GVGTGEAVTHSLS-ESEVWEVQYDCHTKSSNISSSRVLPAMFCS--EDGILAVVEQG 302 (343)
Q Consensus 249 ~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s--~dg~i~~~~~~ 302 (343)
.+| ...+..+.++|..+ ++++++ .|+.+++|+..
T Consensus 418 ----------~~h~~~~~~~~~~~~~~~----------~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 ----------EGHSKAAVSDLSSHPTEN----------LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ----------cCCCCCceeccccCCCcC----------eeeecCcCCCceEEEecCC
Confidence 568 88999999999877 678877 78999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=184.99 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=184.1
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
-.+.++|.++.|. ++++.++++.|.+|++|+...+..+... .+|...|..++.+ ...|++|+.|..+.+||+.+
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY---sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY---SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee---cCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 3577999999999 9999999999999999998755544333 4688899998877 78999999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ +.+.+.+|.. .|..++|+. ...+++|+.|..+++||.|+ ...+|++.+.... ..|.+|.... +.
T Consensus 91 Gk-v~Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS-~s~ePiQildea~-------D~V~Si~v~~---he 157 (307)
T KOG0316|consen 91 GK-VDRRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRS-RSFEPIQILDEAK-------DGVSSIDVAE---HE 157 (307)
T ss_pred Ce-eeeecccccc-eeeEEEecCcceEEEeccccceeEEEEccc-CCCCccchhhhhc-------CceeEEEecc---cE
Confidence 95 6667777877 899999999 88899999999999999998 2245555544332 6699999875 45
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+-||+++.||+|.+.....++ ..+|+++.|+++++ .++.++.|++|++.|+..
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~-------------g~pit~vs~s~d~n----------c~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYF-------------GHPITSVSFSKDGN----------CSLASSLDSTLRLLDKET 214 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhc-------------CCcceeEEecCCCC----------EEEEeeccceeeecccch
Confidence 6899999999999999987666655 56899999999998 688999999999998753
Q ss_pred -Ccccccccc-cccceee--ecCCCCCeeEEccCCceEEEEe
Q 019258 304 -EPFELLAEP-CAINSFD--IDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 304 -~~~~~~~~~-~~i~s~~--~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+....+..+ ..=+.++ ++. ....+++|++||.+|+|.
T Consensus 215 GklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred hHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEE
Confidence 222222221 1111111 111 237999999999999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=204.11 Aligned_cols=278 Identities=15% Similarity=0.148 Sum_probs=214.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.-.++.+.|.+ +...|+||+.|.. |++|++.... .....++ +..+.|++++|. ++..+++++.|+.+
T Consensus 174 h~gev~~v~~l~----~sdtlatgg~Dr~-----Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 174 HEGEVHDVEFLR----NSDTLATGGSDRI-----IKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred cccccceeEEcc----Ccchhhhcchhhh-----hhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 556899999999 7789999999965 5599995433 2223333 456789999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-CCE-EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSE-CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
++|++...+.+ ....+|+..|+++.+. +.. +++++.|.++++||+.... +.+.+.... .+.++... ...++
T Consensus 244 r~Wnvd~~r~~---~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S--~cnDI~~~-~~~~~ 316 (459)
T KOG0288|consen 244 RLWNVDSLRLR---HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGS--QCNDIVCS-ISDVI 316 (459)
T ss_pred eeeeccchhhh---hhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eeccccccc--cccceEec-ceeee
Confidence 99999855443 3345799999999998 444 9999999999999998863 444433333 36666554 45688
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
++-.|++|++||.|. ..+....... +.|++++.++++..++ +++-|.++.+.|+|+.+-...+...+.
T Consensus 317 SgH~DkkvRfwD~Rs---~~~~~sv~~g--------g~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA~g~ 384 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRS---ADKTRSVPLG--------GRVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSAEGF 384 (459)
T ss_pred ecccccceEEEeccC---CceeeEeecC--------cceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeecccc
Confidence 888899999999999 6776666644 6799999999987765 568999999999999766555554332
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccc-c-cc--ccccceeeecCCCCCee
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFEL-L-AE--PCAINSFDIDPQNPSDV 328 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~-~-~~--~~~i~s~~~~~~~~~~l 328 (343)
. .+ ..++.+.|+|++. ++++||.||.|++|+-..+..+. + .. +..|+++.|+| .|+.|
T Consensus 385 k-----~a--sDwtrvvfSpd~~----------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~L 446 (459)
T KOG0288|consen 385 K-----CA--SDWTRVVFSPDGS----------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGL 446 (459)
T ss_pred c-----cc--cccceeEECCCCc----------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchh
Confidence 2 22 3489999999988 89999999999999976443322 2 22 34699999999 78999
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
++++.++++.+|+
T Consensus 447 lsadk~~~v~lW~ 459 (459)
T KOG0288|consen 447 LSADKQKAVTLWT 459 (459)
T ss_pred hcccCCcceEecC
Confidence 9999999998884
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=207.85 Aligned_cols=285 Identities=13% Similarity=0.087 Sum_probs=222.8
Q ss_pred ccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC-ccCCCCCCeeEEEcc-CCCeEEE
Q 019258 11 QVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH-SQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 11 ~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~-~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
+++.+ .|.+-|++++|.| ..+.+|++++.|+. ++||++-. ...|+ +...|..+|.+++|+ .+..|++
T Consensus 206 ~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~-----vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGL-----VKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred heeeccCCccccchhhhcc---ceeeEEEecCCCce-----EEEEEEec--CcceehhhhcchhhhhhhhccccCCeeee
Confidence 55556 5889999999999 67899999999975 66999943 23344 446788999999999 8999999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.|+.+++||+++++....... ....+++.+. .+.|++|+.|+.|+.||+++++ +.+.+..|-. .|..+.
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg-~i~~i~ 349 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLG-AILDIT 349 (503)
T ss_pred eecceeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhh-heeeeE
Confidence 99999999999998776654422 1356788887 4789999999999999999985 6666665555 899999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|.+ +.+++++++|+.++||+.+. +-++....... + ....|+..+|++.. +++=+-|..|.++.+...-.
T Consensus 350 F~~~g~rFissSDdks~riWe~~~---~v~ik~i~~~~--~----hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRI---PVPIKNIADPE--M----HTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCC---Cccchhhcchh--h----ccCcceecCCCCCe-ehhhccCceEEEEecccccc
Confidence 999 89999999999999999988 55554433222 2 33779999999875 56778899999998654211
Q ss_pred --eeeeecCCCCcccccCCc--cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CCcccccccccccce
Q 019258 244 --SIVLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EEPFELLAEPCAINS 317 (343)
Q Consensus 244 --~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~~~~~~~~~~~i~s 317 (343)
..... ++| .+.-..+.|+|++. +|++|+.||.+++|+.. .....+..+..++..
T Consensus 420 ~nkkK~f----------eGh~vaGys~~v~fSpDG~----------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 420 LNKKKRF----------EGHSVAGYSCQVDFSPDGR----------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred cCHhhhh----------cceeccCceeeEEEcCCCC----------eEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 11112 344 35567899999998 79999999999999875 223333344589999
Q ss_pred eeecCCCCCeeEEccCCceEEEEe
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++|||...+.|+|++=+|-|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 999999889999999889999985
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=206.53 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=198.3
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..+|-++.|+ .+..++++-.+|.|.||+.++...+...+ ...-||.+..|- -+.+++|++|+.|++++..+.
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe---V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE---VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee---ecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 366789999999 88899999999999999998655443332 234578888777 788999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
.+ ...++.|.. .|++++.+| ...++|+++|-+|++||-.. .=.+...|++|. ..|++++|+|+..+.|
T Consensus 88 ek-V~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~-------HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 88 EK-VKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWACEQTFEGHE-------HYVMQVAFNPKDPNTF 156 (794)
T ss_pred ee-eEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccC--ceeeeeEEcCcc-------eEEEEEEecCCCccce
Confidence 54 455566666 799999999 88999999999999999977 334455688777 7799999999999999
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++++-|++|++|.+.++ .|...+ ++|+..|++|.|-+-+.. |+|+||++|.+|++||++.+
T Consensus 157 aS~sLDrTVKVWslgs~-~~nfTl----------~gHekGVN~Vdyy~~gdk--------pylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSP-HPNFTL----------EGHEKGVNCVDYYTGGDK--------PYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred eeeeccccEEEEEcCCC-CCceee----------eccccCcceEEeccCCCc--------ceEEecCCCceEEEeecchH
Confidence 99999999999999874 444444 689999999999876532 28999999999999998744
Q ss_pred --cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 305 --PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 305 --~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
..++-.+-..|+.+.++|.. ..+++|++||+++||+.
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNS 256 (794)
T ss_pred HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecC
Confidence 34444456789999999954 99999999999999974
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=182.45 Aligned_cols=271 Identities=15% Similarity=0.079 Sum_probs=205.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
+...|..++++- ++++.+|++.|++ +++|+... ..++. .-.|..+|.+++-+ +...|++++.|..+
T Consensus 16 ~qgaV~avryN~----dGnY~ltcGsdrt-----vrLWNp~r---g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 16 AQGAVRAVRYNV----DGNYCLTCGSDRT-----VRLWNPLR---GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccceEEEEEcc----CCCEEEEcCCCce-----EEeecccc---cceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 556899999999 9999999999975 67999843 22333 34677899999998 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC-ceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-GEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
.+||+++++... ..++|.+.|+.+.|+ ...+++|+.|.++++||.++. ..+.+++..... .|.++... ...+
T Consensus 84 ~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~-~heI 158 (307)
T KOG0316|consen 84 QVWDVNTGKVDR---RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVA-EHEI 158 (307)
T ss_pred EEEEcccCeeee---ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEec-ccEE
Confidence 999999765443 335799999999999 778999999999999999873 246666655544 68888765 5789
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++|+.||+++.||+|. +.....+.+ .||+|+.|++++. ..++++-|+++++.|-.+++....+
T Consensus 159 vaGS~DGtvRtydiR~---G~l~sDy~g---------~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sY---- 221 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRK---GTLSSDYFG---------HPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSY---- 221 (307)
T ss_pred EeeccCCcEEEEEeec---ceeehhhcC---------CcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHh----
Confidence 9999999999999999 665544443 6699999999986 5567899999999998886544333
Q ss_pred CCcccccCCccccEEEEE--EeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccc-cceeeecCCCCC
Q 019258 252 TGEAVTHSLSESEVWEVQ--YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCA-INSFDIDPQNPS 326 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~--~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~-i~s~~~~~~~~~ 326 (343)
.+|...-+.+. ++.... .+++||+||.+++|+.-++. ..-+.. ..+ +.+++.+|....
T Consensus 222 -------kGhkn~eykldc~l~qsdt----------hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 222 -------KGHKNMEYKLDCCLNQSDT----------HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred -------cccccceeeeeeeecccce----------eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 45666554444 443333 79999999999999985443 222333 334 789999996655
Q ss_pred eeEEccCCceEEEE
Q 019258 327 DVICSLEWESIAIV 340 (343)
Q Consensus 327 ~l~~~~~~~~i~~~ 340 (343)
++++++ +.+++|
T Consensus 285 f~~A~~--~~~~~~ 296 (307)
T KOG0316|consen 285 FITATG--HGDLFW 296 (307)
T ss_pred eeEecC--Cceece
Confidence 555553 345554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=199.99 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=193.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC--CCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT--PPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~--~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|.+.|.-|.|+| +.++|++++.|.. +++||+...+ +...++ +...+.+++|. ++..+++|+.|+
T Consensus 267 gh~~~V~yi~wSP----DdryLlaCg~~e~-----~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 267 GHSQPVSYIMWSP----DDRYLLACGFDEV-----LSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred cccCceEEEEECC----CCCeEEecCchHh-----eeeccCCcch---hhhhcccCcCCCcceeEEccCCceeEecCCCC
Confidence 6889999999999 8999999998854 7899996532 233333 34678999999 899999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
++..|++..+. ...|...-...|.+++.. |+.+++.+.|..+++++.+... -+.+...+. +|++++.+. +.
T Consensus 335 ~i~~wdlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise~~--~its~~iS~d~k 408 (519)
T KOG0293|consen 335 TIIMWDLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-DRGLISEEQ--PITSFSISKDGK 408 (519)
T ss_pred cEEEecCCcch---hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-hhccccccC--ceeEEEEcCCCc
Confidence 99999998332 234544445678999887 9999999999999999987752 333444444 699999998 67
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
++++--.+..+++||+.. ...+.++.+|... ..+-.-+|.-....++++|++|++|+||+.++ ..++..+
T Consensus 409 ~~LvnL~~qei~LWDl~e---~~lv~kY~Ghkq~-----~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~L- 478 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEE---NKLVRKYFGHKQG-----HFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVL- 478 (519)
T ss_pred EEEEEcccCeeEEeecch---hhHHHHhhccccc-----ceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEee-
Confidence 777777799999999987 6777788877621 34555566655556889999999999999876 6677776
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|...|++|+|+|.++. +++|+|+||+|++|....
T Consensus 479 ---------sGHs~~vNcVswNP~~p~---------m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 ---------SGHSKTVNCVSWNPADPE---------MFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------cCCcceeeEEecCCCCHH---------HhhccCCCCeEEEecCCc
Confidence 789999999999999998 999999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=194.13 Aligned_cols=253 Identities=14% Similarity=0.196 Sum_probs=210.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
-|.|.+.|+.+.|+| ....|++||.|++ ++++|++.....+.++.++...+|.++.|+ .+++|++|+.-.
T Consensus 168 lYDH~devn~l~FHP----re~ILiS~srD~t-----vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHP----RETILISGSRDNT-----VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred hhhccCcccceeecc----hhheEEeccCCCe-----EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence 358999999999999 8889999999976 669999776556667778888899999999 899999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
.+++||++..+..........|++.|+++.++ ++..++++.||.|++||--+++.+..+-..|+...|.+..|.. +.
T Consensus 239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 99999999777665544455799999999999 8999999999999999998876555555667777899999998 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEeccc--CCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF--GSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
++++.|.|..+++|.+.+ ++++..+.+.. +.+ ..-+...|+....+++.---..+.++-||.|+......+
T Consensus 319 yiLsSG~DS~vkLWEi~t---~R~l~~YtGAg~tgrq----~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEIST---GRMLKEYTGAGTTGRQ----KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred EEeecCCcceeeeeeecC---CceEEEEecCCcccch----hhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 999999999999999999 88988887653 112 223345567776777666556778999999996554444
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
. .+|++.+..+..+|.++ .+++||.|-+.+.|...
T Consensus 392 s----------lgHn~a~R~i~HSP~~p----------~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 392 S----------LGHNGAVRWIVHSPVEP----------AFMTCSDDFRARFWYRR 426 (430)
T ss_pred c----------cCCCCCceEEEeCCCCC----------ceeeecccceeeeeeec
Confidence 4 67999999999999998 79999999999999753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=190.92 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=199.5
Q ss_pred CccccCCcccceeeE------EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CC
Q 019258 10 PQVHRFPQSKYIDAV------RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQ 82 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v------~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~ 82 (343)
|+|..=..++.|-.. -|+.+...+..+.++++.|-+.+ +|+.-.. ..+.+++|..-|.+++|+ +.
T Consensus 41 pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak-----vw~a~tg---delhsf~hkhivk~~af~~ds 112 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK-----VWDAVTG---DELHSFEHKHIVKAVAFSQDS 112 (334)
T ss_pred chhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh-----hhhhhhh---hhhhhhhhhheeeeEEecccc
Confidence 444444555666544 57665444557778888886644 9998332 225678899999999999 88
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
+.|++|+.+..++||+++..+.. .....+|.+.|..+-|. .+.|+|.+.|++|++||.++++.+..+. ... +|
T Consensus 113 ~~lltgg~ekllrvfdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s--~V 187 (334)
T KOG0278|consen 113 NYLLTGGQEKLLRVFDLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNS--PV 187 (334)
T ss_pred hhhhccchHHHhhhhhccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCC--CC
Confidence 99999999999999999843311 22234799999999998 7889999999999999999997555554 333 59
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++..++.+.+++..+.+.|++||... ..+++.++.. ..|.+..++|+. .++++|++|..++.||..+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaks---f~~lKs~k~P--------~nV~SASL~P~k-~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKS---FGLLKSYKMP--------CNVESASLHPKK-EFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred cceeeccCCCEEEEecCceeEEecccc---ccceeeccCc--------cccccccccCCC-ceEEecCcceEEEEEeccC
Confidence 999999988899999999999999988 7778777754 348999999987 6889999999999999999
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++..-.+. ++|.++|.+|.|+|++. ..+++|+||+|++|...
T Consensus 256 geEi~~~n----------kgh~gpVhcVrFSPdGE----------~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 256 GEEIGSYN----------KGHFGPVHCVRFSPDGE----------LYASGSEDGTIRLWQTT 297 (334)
T ss_pred Cceeeecc----------cCCCCceEEEEECCCCc----------eeeccCCCceEEEEEec
Confidence 87766654 67999999999999988 68999999999999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=204.03 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=169.3
Q ss_pred cCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee----eeeeccCCccccCeEEEEec---CCEEEEEeCCCcE
Q 019258 67 QWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL----LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRV 137 (343)
Q Consensus 67 ~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~----~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v 137 (343)
...|.+.|++++|+ ++.+|++++.||+|++|++..... ........+|...|.++.|+ ++.|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 34788999999998 567999999999999999974311 01112234699999999998 3689999999999
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
++||+.++. ....+..|.. .|.+++|++ +..|++++.|++|++||+++ ++.+..+..|.+ .....+.|
T Consensus 151 rIWDl~tg~-~~~~l~~h~~-~V~sla~spdG~lLatgs~Dg~IrIwD~rs---g~~v~tl~~H~~------~~~~~~~w 219 (493)
T PTZ00421 151 NVWDVERGK-AVEVIKCHSD-QITSLEWNLDGSLLCTTSKDKKLNIIDPRD---GTIVSSVEAHAS------AKSQRCLW 219 (493)
T ss_pred EEEECCCCe-EEEEEcCCCC-ceEEEEEECCCCEEEEecCCCEEEEEECCC---CcEEEEEecCCC------CcceEEEE
Confidence 999999884 5555566665 799999999 88999999999999999999 777777776652 23556788
Q ss_pred cCCCCeEEEEE---ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-c
Q 019258 217 HPSRKHTCLAG---GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-E 292 (343)
Q Consensus 217 ~p~~~~~~~sg---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~ 292 (343)
.|++..++.+| +.|+.|++||+|+...+..... ..+...+....|++++. .|++++ .
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---------~d~~~~~~~~~~d~d~~----------~L~lggkg 280 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---------LDQSSALFIPFFDEDTN----------LLYIGSKG 280 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---------cCCCCceEEEEEcCCCC----------EEEEEEeC
Confidence 88876666555 3589999999998776666542 11334566677888877 577776 5
Q ss_pred CCeEEEEecCCCcccccc---cccccceeeecC
Q 019258 293 DGILAVVEQGEEPFELLA---EPCAINSFDIDP 322 (343)
Q Consensus 293 dg~i~~~~~~~~~~~~~~---~~~~i~s~~~~~ 322 (343)
||.|++|+...+...... ...++..+.+.|
T Consensus 281 Dg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 281 EGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 999999998644322111 134677777777
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=196.16 Aligned_cols=250 Identities=12% Similarity=0.117 Sum_probs=207.8
Q ss_pred CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 65 HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
.+..+|..+|+.+.|+ ...+.++++.|++|++||..+++. .++.++|...+.++.++ |+++++|+.|-.+++||
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 3445677889999998 666778888999999999986654 45667899999999998 99999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
..+...+.+...+|+- .|.++.|.| ++.+++++.|.+|+.||+.+ +.++.++.+|. .++..++.+.+|
T Consensus 179 ~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~t---g~cv~t~~~h~-------ewvr~v~v~~DG 247 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDT---GYCVKTFPGHS-------EWVRMVRVNQDG 247 (406)
T ss_pred HHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEeccc---ceeEEeccCch-------HhEEEEEecCCe
Confidence 9873334444455655 799999999 99999999999999999999 89999999887 889999999987
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC-----cCCCCCccceEEEecCCe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS-----NISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~-----~~~~~~~~~l~s~s~dg~ 295 (343)
.|+++++.|.++++|-+.+.+....+ ..|+.+|-+++|-|....+ .++.+--..+.++|.|++
T Consensus 248 -ti~As~s~dqtl~vW~~~t~~~k~~l-----------R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 248 -TIIASCSNDQTLRVWVVATKQCKAEL-----------REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred -eEEEecCCCceEEEEEeccchhhhhh-----------hccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 48899999999999999875443333 5699999999999876533 122222337899999999
Q ss_pred EEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 296 LAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 296 i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|++||-.. -.+++..+...|.+++|+| .|+||++..||..+++|+
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEE
Confidence 99999754 4578888889999999999 689999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=207.28 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=218.0
Q ss_pred cCCCCccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCC
Q 019258 6 VRTPPQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQS 83 (343)
Q Consensus 6 ~~~~~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~ 83 (343)
+|+-+.+++| .|..+|..|+|+| .+.+||+|+.|- +|++|+++.. ..+.+..+|-..|..+.|+ .-.
T Consensus 38 YRM~tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDy-----kIkVWnYk~r--rclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 38 YRMGTLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDY-----KIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred hhhhhHHhhhhccCCccceeeecC----CCCeEEecCCcc-----EEEEEecccc--eehhhhccccceeEEeeccCCCc
Confidence 5677788999 5899999999999 889999999884 3679999552 2224556899999999999 889
Q ss_pred eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC--------C--------
Q 019258 84 LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG--------G-------- 145 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~--------~-------- 145 (343)
.++++|.|.+|+||+......+.+. ++|.--|.|-+|. .+.++|+|-|-+|++||+.. +
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 9999999999999999876666655 3688899999999 78999999999999999842 0
Q ss_pred ------------ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecccCCCCCcccC
Q 019258 146 ------------GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGM 210 (343)
Q Consensus 146 ------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~ 210 (343)
..+..+.++|+. +|.-++|+| -..+++|++|+.|++|.... .+. +-++.+|. ..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne---tKaWEvDtcrgH~-------nn 252 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVDTCRGHY-------NN 252 (1202)
T ss_pred cccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeEEEecc---ccceeehhhhccc-------CC
Confidence 012345567777 899999999 88999999999999998865 232 22344444 78
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
|.++-|||.. .++++.++|++|++||+.+......+. ..++.-|.++-||..+ |+.+
T Consensus 253 Vssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfr-----------rendRFW~laahP~lN-----------LfAA 309 (1202)
T KOG0292|consen 253 VSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFR-----------RENDRFWILAAHPELN-----------LFAA 309 (1202)
T ss_pred cceEEecCcc-ceeEecCCCccEEEEecccccceeeee-----------ccCCeEEEEEecCCcc-----------eeee
Confidence 9999999975 567899999999999998744433433 2357789999999865 6777
Q ss_pred ecCCeEEEEecCCCc-c-------------------cccc-----------c---ccccceeeecCCCCCeeEEccCCce
Q 019258 291 SEDGILAVVEQGEEP-F-------------------ELLA-----------E---PCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 291 s~dg~i~~~~~~~~~-~-------------------~~~~-----------~---~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
+.|+.+.+++...+. . .+.. . ..+..++..+|..+-.++|+..+..
T Consensus 310 gHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 310 GHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred ecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 788777776654221 1 0000 0 1568889999877888999765543
Q ss_pred E
Q 019258 337 I 337 (343)
Q Consensus 337 i 337 (343)
-
T Consensus 390 ~ 390 (1202)
T KOG0292|consen 390 E 390 (1202)
T ss_pred e
Confidence 3
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=205.68 Aligned_cols=270 Identities=13% Similarity=0.150 Sum_probs=211.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeE-EEcc--CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISS-LSTS--HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~-v~~~--~~~~l~~~s~dg 92 (343)
.|...|..++..+ +..++++|.|++ +++|+-.++.........++.+-|.. ++|. +..+|++|+.|+
T Consensus 12 gH~~DVr~v~~~~-----~~~i~s~sRd~t-----~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 12 GHKSDVRAVAVTD-----GVCIISGSRDGT-----VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cCccchheeEecC-----CeEEeecCCCCc-----eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4666777777655 557899999976 55999866554433444456666665 7776 667799999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
++.+|.....+++... ++|+..|++++.. ...++|||.|.++++|....- .....+|.. .|+++...|.+.+
T Consensus 82 ~i~v~~~~~~~P~~~L---kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l---~~~l~gH~a-sVWAv~~l~e~~~ 154 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL---KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL---VYSLQGHTA-SVWAVASLPENTY 154 (745)
T ss_pred eEEEEecCCCCchhhh---hccccceeeeecCCcCceEecccccceEEecchhh---hcccCCcch-heeeeeecCCCcE
Confidence 9999999866665544 4799999999987 555999999999999987652 333677777 8999999997799
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+||+.|++|++|.- ++.+.+|.+|. +.|..+++-|+.. |++++.||.|++||+. ++.....
T Consensus 155 vTgsaDKtIklWk~-----~~~l~tf~gHt-------D~VRgL~vl~~~~--flScsNDg~Ir~w~~~-ge~l~~~---- 215 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG-----GTLLKTFSGHT-------DCVRGLAVLDDSH--FLSCSNDGSIRLWDLD-GEVLLEM---- 215 (745)
T ss_pred EeccCcceeeeccC-----Cchhhhhccch-------hheeeeEEecCCC--eEeecCCceEEEEecc-Cceeeee----
Confidence 99999999999975 56777888877 8899999999753 5799999999999994 3444443
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccccc-ccceeeecCCCCCeeEE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPC-AINSFDIDPQNPSDVIC 330 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~-~i~s~~~~~~~~~~l~~ 330 (343)
.+|+.-|+++...+.+. .+++|++|+++++|+..+-. ..+..|. +|.+..+-+ + ..+++
T Consensus 216 -------~ghtn~vYsis~~~~~~----------~Ivs~gEDrtlriW~~~e~~-q~I~lPttsiWsa~~L~-N-gDIvv 275 (745)
T KOG0301|consen 216 -------HGHTNFVYSISMALSDG----------LIVSTGEDRTLRIWKKDECV-QVITLPTTSIWSAKVLL-N-GDIVV 275 (745)
T ss_pred -------eccceEEEEEEecCCCC----------eEEEecCCceEEEeecCceE-EEEecCccceEEEEEee-C-CCEEE
Confidence 57999999999665555 79999999999999998433 3344444 788888876 3 67888
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
|++||.||||+
T Consensus 276 g~SDG~VrVfT 286 (745)
T KOG0301|consen 276 GGSDGRVRVFT 286 (745)
T ss_pred eccCceEEEEE
Confidence 88999999996
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=185.60 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=187.8
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|+..|.++... .+.+|+++++|++|+||.++++..........+|.+||..+.|- |..|++|+.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3566667766655 68999999999999999998655444455556899999999997 899999999999999998
Q ss_pred CCCceEEEEE--cCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEE
Q 019258 143 IGGGEFKRVY--DGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+++ -.+.. ..|.. .|++++|.| +-.|+.++.||.|.+.+.+.++ +-.... ...|. --+++++|
T Consensus 88 ~~g~-w~k~~e~~~h~~-SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~-------~GvnsVsw 157 (299)
T KOG1332|consen 88 ENGR-WTKAYEHAAHSA-SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHE-------IGVNSVSW 157 (299)
T ss_pred CCCc-hhhhhhhhhhcc-cceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccc-------cccceeee
Confidence 8863 32222 23444 799999998 6678899999999999998821 122222 33333 45899999
Q ss_pred cCC---C----------CeEEEEEecCCcEEEEEccCCceeee-eecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 217 HPS---R----------KHTCLAGGSSGTVFAWDLRWQQQSIV-LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 217 ~p~---~----------~~~~~sg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
.|. | ...|++|+.|..|+||+....+-... .+ .+|.+.|.+++|.|.......
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l----------~~H~dwVRDVAwaP~~gl~~s--- 224 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL----------EGHKDWVRDVAWAPSVGLPKS--- 224 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh----------hhcchhhhhhhhccccCCCce---
Confidence 986 2 13479999999999999877422111 13 689999999999998643222
Q ss_pred CccceEEEecCCeEEEEecCCCc----cccccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEP----FELLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~----~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++||.||++.+|....+. .+++.+ +.++.++.|+. .|..|+.++.+..+++|+
T Consensus 225 ---~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 225 ---TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ---eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEE
Confidence 79999999999999876432 344444 67899999998 679999999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=208.75 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=215.2
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
..+.+..|. ..++++++.|+. |.+|+.... ..... ..+|.+.|.+++|. .+++|++|+.|.++++
T Consensus 209 ~~~~~~q~~------~~~~~~~s~~~t-----l~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rv 275 (537)
T KOG0274|consen 209 HVVLCLQLH------DGFFKSGSDDST-----LHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERV 275 (537)
T ss_pred chhhhheee------cCeEEecCCCce-----eEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEe
Confidence 344444544 456888988865 679998442 12233 46899999999999 6899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF 176 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~ 176 (343)
||...++...... +|...|.++......+++|+.|.+|++|++.++ ....++.+|.. .|.++..+ .+.+++|++
T Consensus 276 Wd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~-~V~~v~~~-~~~lvsgs~ 349 (537)
T KOG0274|consen 276 WDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTG-PVNCVQLD-EPLLVSGSY 349 (537)
T ss_pred EecCCCcEEEEec---CCCceEEEEEccCceEeeccCCceEEEEeccCc-ceEEEeccccc-cEEEEEec-CCEEEEEec
Confidence 9998877766654 699999999988889999999999999999998 46777766666 89999988 789999999
Q ss_pred CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 177 GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
|++|++||.++ ++++..+.+|. .+|.++.+.+. ..+++|+.|++|++||+++.......+
T Consensus 350 d~~v~VW~~~~---~~cl~sl~gH~-------~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl-------- 409 (537)
T KOG0274|consen 350 DGTVKVWDPRT---GKCLKSLSGHT-------GRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL-------- 409 (537)
T ss_pred CceEEEEEhhh---ceeeeeecCCc-------ceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh--------
Confidence 99999999999 89999999877 88999988874 457899999999999999863333333
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc--ccccceeeecCCCCCeeEEccC
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE--PCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
..|.+-+..+.+.. . .|++++.||+|++||.... ....+.. ...|.++.... ..++|+++
T Consensus 410 --~~h~~~v~~l~~~~--~----------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~---~~il~s~~ 472 (537)
T KOG0274|consen 410 --QGHTSLVSSLLLRD--N----------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGK---EEILCSSD 472 (537)
T ss_pred --cCCccccccccccc--c----------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecCc---ceEEEEec
Confidence 57888887777753 3 7999999999999986532 3333333 36777777762 69999999
Q ss_pred CceEEEEeC
Q 019258 334 WESIAIVSR 342 (343)
Q Consensus 334 ~~~i~~~~~ 342 (343)
++.+++|+-
T Consensus 473 ~~~~~l~dl 481 (537)
T KOG0274|consen 473 DGSVKLWDL 481 (537)
T ss_pred CCeeEEEec
Confidence 999999974
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=179.10 Aligned_cols=243 Identities=16% Similarity=0.147 Sum_probs=197.9
Q ss_pred CCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEE
Q 019258 64 PHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLV 140 (343)
Q Consensus 64 ~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~w 140 (343)
++...+|+-+++.++|. ++++|++++.|.+..||-..+++.+-.. .+|.+.|.+++.+ .+.+++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty---~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY---DGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee---cCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 34556799999999999 9999999999999999987666655444 3799999999988 8899999999999999
Q ss_pred ECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccC----CCCCeeEEecccCCCCCcccC
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAG----SGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~ 210 (343)
|+++++ +...+.... +|..+.|++ +++++...+ .+.|.++|++... ..+|...+..+. ..
T Consensus 80 Dv~tGk-~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-------sk 149 (327)
T KOG0643|consen 80 DVETGK-QLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-------SK 149 (327)
T ss_pred EcCCCc-EEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-------cc
Confidence 999996 454544444 699999999 665555533 5679999998411 245566666554 67
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
++.+-|.|.+..| ++|.+||.|.+||++++.+.+... +.|...|+.|+++|+.. +++++
T Consensus 150 it~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~~v~s~----------~~h~~~Ind~q~s~d~T----------~FiT~ 208 (327)
T KOG0643|consen 150 ITSALWGPLGETI-IAGHEDGSISIYDARTGKELVDSD----------EEHSSKINDLQFSRDRT----------YFITG 208 (327)
T ss_pred eeeeeecccCCEE-EEecCCCcEEEEEcccCceeeech----------hhhccccccccccCCcc----------eEEec
Confidence 9999999998754 689999999999999976666554 67899999999999987 89999
Q ss_pred ecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.|.+-++||.. .+....+....|||+.+++| ..+.||+|+-.++..+-+
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP-~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNTAAISP-LLDHVILGGGQEAMDVTT 259 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccceeccc-ccceEEecCCceeeeeee
Confidence 999999999974 44556666789999999999 559999999888877643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=171.88 Aligned_cols=295 Identities=17% Similarity=0.207 Sum_probs=211.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC------------C-CCCCCCccCCCCCCeeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL------------P-ASLTPHSQWTPPTRISSL 77 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~------------~-~~~~~~~~~~~~~~v~~v 77 (343)
.+.....++.|.+|+|+| .+.+.+.||.-++ +++-..+. . +...+...-.|.+.|.|.
T Consensus 25 ~i~~l~dsqairav~fhp----~g~lyavgsnskt-----~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHP----AGGLYAVGSNSKT-----FRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCT 95 (350)
T ss_pred EEEEecchhheeeEEecC----CCceEEeccCCce-----EEEEccccccCcccccccccCCCeEEeeeccccCccEEEE
Confidence 455566778999999999 7888899886543 44443321 0 111223334578999999
Q ss_pred Ecc-CCCeEEEEcCCCcEEEEEccCceeeee--eccCCccccCeEEEEec------CCEEEEEe-CCCcEEEEECCCCce
Q 019258 78 STS-HQSLVAASTLSGSLHVLSSAMQVLLSV--DENSGFHVGPISGVDLT------GSECVSVG-EDGRVNLVSVIGGGE 147 (343)
Q Consensus 78 ~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~--~~~~~~h~~~v~~~~~~------~~~~~s~s-~dg~v~~wd~~~~~~ 147 (343)
+|+ .+.++++|+.|.+|++..++....-.. .-....|.+.|..++|. +..+++++ .|..|.+-|..++ +
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-Q 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-C
Confidence 999 999999999999999998863211100 01123599999999996 44566554 5666777777777 4
Q ss_pred EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...-+.+|.. .|.++---.+-.|++|+.|.+|++||+|- ...+..+.......+..+..|.+++..|.|+ ++++|
T Consensus 175 ~~~a~sghtg-hilalyswn~~m~~sgsqdktirfwdlrv---~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg 249 (350)
T KOG0641|consen 175 GFHALSGHTG-HILALYSWNGAMFASGSQDKTIRFWDLRV---NSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG 249 (350)
T ss_pred cceeecCCcc-cEEEEEEecCcEEEccCCCceEEEEeeec---cceeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence 6666677776 66665322267899999999999999998 6666665433222344447899999999986 67899
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-c
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-F 306 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~ 306 (343)
-.|....+||+|.++..+.+ ..|...|.+|.|+|... ++++||.|..|++-+.+... .
T Consensus 250 ~~dssc~lydirg~r~iq~f-----------~phsadir~vrfsp~a~----------yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRF-----------HPHSADIRCVRFSPGAH----------YLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred cCCCceEEEEeeCCceeeee-----------CCCccceeEEEeCCCce----------EEEEecccceEEEeecccchhh
Confidence 99999999999986554444 57999999999999866 89999999999998865322 1
Q ss_pred c----cccc-ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 307 E----LLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 307 ~----~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+ +..+ ...+-.+-|+|++ --.++.+.|....+|.-
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEecc
Confidence 1 1222 3567788999965 55667777888888853
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=202.85 Aligned_cols=249 Identities=13% Similarity=0.150 Sum_probs=198.1
Q ss_pred CccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEE
Q 019258 10 PQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVA 86 (343)
Q Consensus 10 ~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~ 86 (343)
.-++.| .|.+.|..++|++ .+..|+|+|+|.. |++||++. ..++..+.....++|+.|. +.+.++
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~-----lKlwDtET---G~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRF-----LKLWDTET---GQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred ceehhhhcchhhhhhhhccc----cCCeeeeeeccee-----eeeecccc---ceEEEEEecCCCceeeecCCCCCcEEE
Confidence 344555 5889999999999 8999999999975 77999955 5556666777789999999 448999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
+|.+|+.|+.||++.++-++ ....|-+.|..+.|. +..|++.++|+++++|+.+.+. +.........-...++.
T Consensus 317 ~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLT 392 (503)
T ss_pred EecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCccee
Confidence 99999999999999665332 223588999999998 9999999999999999998874 44333333333688899
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
.+| .+.+++-+.|+.|.++.+...-....-..+++|. ..+.-..+.|+|+|.. +++|..||.+.+||.++ ..
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-----vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt-~k 465 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-----VAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKT-TK 465 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhccee-----ccCceeeEEEcCCCCe-EEeecCCccEEEeechh-hh
Confidence 999 8888888999999999876511112223356554 2267888999999975 57999999999999988 44
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
....+ ++|.+.+..+.|||..+. .+++|+.||.|++|+
T Consensus 466 l~~~l----------kah~~~ci~v~wHP~e~S---------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKL----------KAHDQPCIGVDWHPVEPS---------KVATCGWDGLIKIWD 503 (503)
T ss_pred hhhcc----------ccCCcceEEEEecCCCcc---------eeEecccCceeEecC
Confidence 44444 689999999999999998 999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=189.18 Aligned_cols=280 Identities=14% Similarity=0.187 Sum_probs=214.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|++.|+++.+.| .++=+++|||.|+.+ .+++= ++..-....-.|..-|+|+.|+ ++.+++++++||++
T Consensus 145 GhSr~ins~~~Kp---sRPfRi~T~sdDn~v-----~ffeG--PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 145 GHSRRINSVDFKP---SRPFRIATGSDDNTV-----AFFEG--PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred ccceeEeeeeccC---CCceEEEeccCCCeE-----EEeeC--CCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 5889999999999 678889999999752 24443 3322223334577789999999 99999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEEEeCCCC
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCVKWASPT 169 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 169 (343)
.+||=.+++.+-..+...+|++.|.+++|+ +.+|+++|.|.++++||+.+.+ +.+.+..... ..+-|+ |- ..
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v~dqqvG~l-Wq-kd 291 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTVEDQQVGCL-WQ-KD 291 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc-eEEEeecCCchhceEEEEE-Ee-CC
Confidence 999988777666666566899999999999 8999999999999999999985 4444333221 123333 33 77
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.|++.+.+|+|.+++... ..++..+.+|. ..|+++..+|++.+ +.+|+.||.|.-||...+..-...-
T Consensus 292 ~lItVSl~G~in~ln~~d---~~~~~~i~GHn-------K~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g- 359 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSD---PSVLKVISGHN-------KSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAG- 359 (603)
T ss_pred eEEEEEcCcEEEEecccC---CChhheecccc-------cceeEEEEcCCCCE-EEeeccCceEEEEecCCcccccccc-
Confidence 899999999999999988 66888888876 77999999999855 5799999999999998754322221
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-------------Ccc----------
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-------------EPF---------- 306 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-------------~~~---------- 306 (343)
+.|...|.+++-+..+ .+++++.|.+|++.+... .+.
T Consensus 360 ---------~~h~nqI~~~~~~~~~-----------~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 360 ---------KGHTNQIKGMAASESG-----------ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred ---------ccccceEEEEeecCCC-----------cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 5699999999988543 589999999999874311 111
Q ss_pred ---------ccccc---------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 ---------ELLAE---------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 ---------~~~~~---------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++.. .-...+++++| +++.++.|++|+.+++++
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEE
Confidence 11110 02356788998 679999999999999986
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=191.66 Aligned_cols=253 Identities=19% Similarity=0.244 Sum_probs=190.4
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-------------CCCCCC-ccCCCCCCeeE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-------------ASLTPH-SQWTPPTRISS 76 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-------------~~~~~~-~~~~~~~~v~~ 76 (343)
....++|-..|+-++-.| .++-.++++|-.. + ++.+|++... ....++ +.-.|.+.=++
T Consensus 144 ~~~~i~h~g~~NRvr~~~----~~~~~~~aswse~-G--~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSR----LGNEVLCASWSEN-G--RVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred cccccccccccceeeecc----cCCcceeeeeccc-C--cEEEEEchhhhhhhcCccccccccccCceEEecccCcccee
Confidence 455667888888888888 5555667777533 3 3779998321 112222 22346778889
Q ss_pred EEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce-EEE
Q 019258 77 LSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE-FKR 150 (343)
Q Consensus 77 v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~-~~~ 150 (343)
++|+ ....|++|..-+.|++|...++.-..-.....+|+..|-.++|+ ...|+|||.||+|++||++.+.+ .-.
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 9999 56778898888999999987543222222233699999999998 78999999999999999998622 222
Q ss_pred EEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 151 VYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
....|.+ -|..++|+. ...|++|++||+++|||+|+-..++|+.+|+.|. .+|++|.|+|.....|++++.
T Consensus 297 ~~kAh~s-DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-------~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 297 STKAHNS-DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-------APITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred EeeccCC-ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-------CCeeEEEeccccCceEEeccC
Confidence 2245555 799999999 5689999999999999999866678899999776 899999999999889999999
Q ss_pred CCcEEEEEccCCc---------------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 230 SGTVFAWDLRWQQ---------------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 230 dg~v~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
|.+|.+||+.... .|..++. ++++ ...+..|+||++.+. .+++.+.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-------VHqG-Qke~KevhWH~QiPG---------~lvsTa~dG 431 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-------VHQG-QKEVKEVHWHRQIPG---------LLVSTAIDG 431 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEE-------Eecc-hhHhhhheeccCCCC---------eEEEecccc
Confidence 9999999984321 1222331 1222 467999999999997 899999998
Q ss_pred e
Q 019258 295 I 295 (343)
Q Consensus 295 ~ 295 (343)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 5
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=188.55 Aligned_cols=277 Identities=17% Similarity=0.180 Sum_probs=213.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
.-|.++.-+| ....++||+.|.+ +-++|.+.+... ...-+|.-.|+++.|+ +.+..++++.|-.|+||
T Consensus 220 pgi~ald~~~----s~~~ilTGG~d~~-----av~~d~~s~q~l--~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 220 PGITALDIIP----SSSKILTGGEDKT-----AVLFDKPSNQIL--ATLKGHTKKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred CCeeEEeecC----CCCcceecCCCCc-----eEEEecchhhhh--hhccCcceEEEEEEeccchhheeecCCcceEEee
Confidence 3577777777 3677899999965 447777553322 2234678899999999 78889999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~ 174 (343)
......+.... ..|.++|+.+..+ +++|++++.||+..+.|++++..............+++.+|+| +..|.+|
T Consensus 289 s~~~~s~~~~~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 289 SVPLSSEPTSS---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred ccccccCcccc---ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 98744433322 3699999999998 9999999999999999999986544444323334799999999 8888899
Q ss_pred eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCc
Q 019258 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
..|+.|++||+.. +..+..|.+|. ++|..|+|+.+|. .++++++|+.|++||+|+......+.
T Consensus 366 t~d~~vkiwdlks---~~~~a~Fpght-------~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~------ 428 (506)
T KOG0289|consen 366 TPDGVVKIWDLKS---QTNVAKFPGHT-------GPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQ------ 428 (506)
T ss_pred CCCceEEEEEcCC---ccccccCCCCC-------CceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceee------
Confidence 9999999999998 66788888877 8999999999985 46899999999999999976555554
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC----CcccccccccccceeeecCCCCCeeEE
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE----EPFELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~----~~~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
.....++.++.|.+.+. +|+.++.|=.|++++... +..++..+....+.+.|.. .-+++++
T Consensus 429 ----l~~~~~v~s~~fD~SGt----------~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s 493 (506)
T KOG0289|consen 429 ----LDEKKEVNSLSFDQSGT----------YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLAS 493 (506)
T ss_pred ----ccccccceeEEEcCCCC----------eEEeecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEee
Confidence 22334799999999887 788889998898888433 2323222234677777775 4488888
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
++-+..+.++.
T Consensus 494 ~smd~~l~~~a 504 (506)
T KOG0289|consen 494 TSMDAILRLYA 504 (506)
T ss_pred ccchhheEEee
Confidence 88777666664
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=187.95 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=184.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...+..+.|.| +++++++++.|+. +.+|++...... .....|...|.++.|. ++.++++++.+|.+
T Consensus 49 ~~~~~i~~~~~~~----~~~~l~~~~~~~~-----i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 117 (289)
T cd00200 49 GHTGPVRDVAASA----DGTYLASGSSDKT-----IRLWDLETGECV--RTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117 (289)
T ss_pred cCCcceeEEEECC----CCCEEEEEcCCCe-----EEEEEcCcccce--EEEeccCCcEEEEEEcCCCCEEEEecCCCeE
Confidence 4567788999999 6789999998865 779999653222 2223566789999999 55677777779999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+...... .|...+.++.++ +..+++++.|+.|++||+++++ ....+..+.. .+.++.|++ +..+
T Consensus 118 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~l 192 (289)
T cd00200 118 KVWDVETGKCLTTLR---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTG-EVNSVAFSPDGEKL 192 (289)
T ss_pred EEEECCCcEEEEEec---cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCcc-ccceEEECCCcCEE
Confidence 999998554443332 588899999999 5666666779999999998764 4444455554 799999999 6689
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. .+++..+..+. ..+.+++|+|++ .++++++.||.|++||++... +....
T Consensus 193 ~~~~~~~~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~-~~~~~--- 257 (289)
T cd00200 193 LSSSSDGTIKLWDLST---GKCLGTLRGHE-------NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE-CVQTL--- 257 (289)
T ss_pred EEecCCCcEEEEECCC---CceecchhhcC-------CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce-eEEEc---
Confidence 9999999999999987 56666665443 679999999984 566777779999999998743 33333
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..|...|.+++|+|++. .+++++.||.|++|+
T Consensus 258 -------~~~~~~i~~~~~~~~~~----------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 -------SGHTNSVTSLAWSPDGK----------RLASGSADGTIRIWD 289 (289)
T ss_pred -------cccCCcEEEEEECCCCC----------EEEEecCCCeEEecC
Confidence 46788999999999876 799999999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=178.95 Aligned_cols=301 Identities=11% Similarity=0.111 Sum_probs=222.4
Q ss_pred CCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc------
Q 019258 8 TPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS------ 80 (343)
Q Consensus 8 ~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~------ 80 (343)
+...+..|..+..+.++.|+-. .....+++.||.-.+ ..-++.+..+.++ .+......++|+-+++.+.|.
T Consensus 34 r~~eiy~Y~ap~~lya~~Ws~~-~~~~~rla~gS~~Ee-~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 34 RRKEIYTYNAPWPLYAMNWSVR-PDKKFRLAVGSFIEE-YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ccceEEEecCCCceeeeccccC-CCcceeEEEeeeccc-cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence 3446788888889999999974 245678899987533 2234556666432 234445568999999999998
Q ss_pred CCCeEEEEcCCCcEEEEEccCc-eeeee-----eccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc--eEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQ-VLLSV-----DENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG--EFK 149 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~-~~~~~-----~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~--~~~ 149 (343)
.+++|++ .+..+|+|++... ..+.. ......+.+++++++|+ .+++.++|-|-+..+||++++. .+.
T Consensus 112 ~pdlLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 112 YPDLLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred Ccchhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 2234443 3447999999732 22211 11223466799999999 7889999999999999999852 245
Q ss_pred EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 150 RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
..+-.|+. .|..++|.. .+.|++.|.||.+|+||+|. ..+.-.-++... ...+.-.++|+++.++++|+-
T Consensus 190 TQLIAHDK-EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~--leHSTIIYE~p~-----~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 190 TQLIAHDK-EVYDIAFLKGSRDVFASVGADGSVRMFDLRS--LEHSTIIYEDPS-----PSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eEEEecCc-ceeEEEeccCccceEEEecCCCcEEEEEecc--cccceEEecCCC-----CCCcceeeccCcCCchHHhhh
Confidence 55667777 899999998 77899999999999999998 222222233221 016789999999988887774
Q ss_pred ec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 228 GS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 228 ~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
.. ...|.+.|+|.+..|+..+ ..|.+.|++++|.|+... .+.+|++|....+||....+.
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L----------~~H~a~VNgIaWaPhS~~---------hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARL----------RNHQASVNGIAWAPHSSS---------HICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hcCCceEEEEEecCCCcceehh----------hcCcccccceEecCCCCc---------eeeecCCcceEEEEecccccc
Confidence 44 4569999999999999888 789999999999999998 999999999999999765544
Q ss_pred cc-------cccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 307 EL-------LAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 307 ~~-------~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+- +....-||.+.|++..++.+.+...+ ++.++
T Consensus 323 ~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 323 ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred cCCCCchhhhhccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence 22 22346799999997777888877633 55554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=203.70 Aligned_cols=249 Identities=17% Similarity=0.136 Sum_probs=193.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--------------------------------CC---
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--------------------------------PA--- 60 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--------------------------------~~--- 60 (343)
.|...|-++.|+| ++++||+|+.|+- |+||.+-+ ..
T Consensus 265 ah~gaIw~mKFS~----DGKyLAsaGeD~v-----irVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH----DGKYLASAGEDGV-----IRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred ccCCcEEEEEeCC----CCceeeecCCCce-----EEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4777899999999 9999999999964 77998744 00
Q ss_pred ----------------------CCCCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccC
Q 019258 61 ----------------------SLTPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP 117 (343)
Q Consensus 61 ----------------------~~~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~ 117 (343)
..++++. .+|.++|.++.|+..++|++++.|.+|+||++...+.+.+. .|..-
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F----~Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF----SHNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----ecCCe
Confidence 0111111 35788999999999999999999999999999977777665 49999
Q ss_pred eEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC
Q 019258 118 ISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP 193 (343)
Q Consensus 118 v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~ 193 (343)
|+|++|+ .++|++|+-||.|+||++... ++....+.++ -|++++|.| ++..+.|+.+|.+++|+.+. .+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~Dl~~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~---lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDK-KVVDWNDLRD--LITAVCYSPDGKGAVIGTFNGYCRFYDTEG---LKL 485 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcC-eeEeehhhhh--hheeEEeccCCceEEEEEeccEEEEEEccC---CeE
Confidence 9999999 899999999999999999887 4666666676 499999999 88999999999999999977 444
Q ss_pred eeEEe--cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 194 VLQFK--GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 194 ~~~~~--~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
...+. .+.. +......|+.+.|.|....-+++.+.|-.|+|+|+|.......+.+.. -...-....|.
T Consensus 486 ~~~~~I~~~~~-Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~---------n~~SQ~~Asfs 555 (712)
T KOG0283|consen 486 VSDFHIRLHNK-KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR---------NTSSQISASFS 555 (712)
T ss_pred EEeeeEeeccC-ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc---------cCCcceeeeEc
Confidence 43322 2221 222334699999999877655667999999999997744443433211 11233566788
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.++. +++++|+|..|++|+...
T Consensus 556 ~Dgk----------~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 556 SDGK----------HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCC----------EEEEeecCceEEEEeCCC
Confidence 8877 899999999999999744
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=209.51 Aligned_cols=239 Identities=14% Similarity=0.202 Sum_probs=193.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc--CCCeEEEEcCCCcEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS--HQSLVAASTLSGSLHV 96 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v 96 (343)
.+..|+|.. -+.++++|++..+. |-+||+......+++.. -.|.-.++++.|+ ++.+|++|+.||.|++
T Consensus 89 S~~DVkW~~---~~~NlIAT~s~nG~-----i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 89 SAADVKWGQ---LYSNLIATCSTNGV-----ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred ehhhccccc---chhhhheeecCCCc-----EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 467789986 57899999998765 55999966322233333 3588899999999 8899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||++......... .....|.+|.|+ +.+|+++.+.|.|++||++...++...+..|.+ .|.|+.|+| ...|+
T Consensus 161 ~DlR~~~S~~t~~---~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 161 WDLRSKKSKSTFR---SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREWLA 236 (839)
T ss_pred Eeeeccccccccc---ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCceee
Confidence 9998544333332 355689999999 889999999999999999997667666677777 999999999 88999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|||.|+.|+|||... +...+..++... .++.+|.|-|..++.|++++ .|-.|++||+|.+--|....
T Consensus 237 TGGRDK~vkiWd~t~-~~~~~~~tInTi--------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~-- 305 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTD-SRAKPKHTINTI--------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF-- 305 (839)
T ss_pred ecCCCccEEEEeccC-CCccceeEEeec--------ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--
Confidence 999999999999975 122333344322 78999999999988888877 47789999999988888877
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
..|...+..++|...... .+++||.||++..
T Consensus 306 --------~eH~~~vt~i~W~~~d~~---------~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 306 --------LEHTDSVTGIAWDSGDRI---------NLWSCSKDGTVLQ 336 (839)
T ss_pred --------eccCccccceeccCCCce---------eeEeecCccHHHH
Confidence 779999999999876665 8999999999854
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=187.55 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=222.7
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCC-----ccCCCCCCeeEEEcc-CCCeE
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPH-----SQWTPPTRISSLSTS-HQSLV 85 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~-----~~~~~~~~v~~v~~~-~~~~l 85 (343)
.+|.+..-+.+.+|+| ++.+|++||-|+- |++|++..... ..+. ..+-+..+|.|+.|+ +...|
T Consensus 208 IKFg~KSh~EcA~FSP----DgqyLvsgSvDGF-----iEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP----DGQYLVSGSVDGF-----IEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred eecccccchhheeeCC----CCceEeeccccce-----eeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 3456667899999999 9999999999976 67999844211 1111 123467889999999 88999
Q ss_pred EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 86 AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
++|+.||.|++|.+..++.+. ++.++|...|+++.|+ +..+++++.|.++++.-+.+++ +..-+.+|.+ .|+..
T Consensus 279 AsGsqDGkIKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsS-yvn~a 354 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSS-YVNEA 354 (508)
T ss_pred hccCcCCcEEEEEEecchHHH--HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccc-cccce
Confidence 999999999999999776553 4456799999999999 8899999999999999999995 5666677777 89999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
.|.+ ++.+++++.||+|++|+..+ .+++.+|+.... ..+|+++-.-|..+.-++.+....+|++-++.. +
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Kt---teC~~Tfk~~~~-----d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q 425 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKT---TECLSTFKPLGT-----DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q 425 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcc---hhhhhhccCCCC-----cccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e
Confidence 9999 99999999999999999999 888888875541 167999999998877778889999999999863 3
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~ 320 (343)
....+. .+ ....+..-+...+|.+. +++..++|+.++-+...... ..+.-+...+-.+.-
T Consensus 426 vVrsfs-SG-------kREgGdFi~~~lSpkGe----------wiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 426 VVRSFS-SG-------KREGGDFINAILSPKGE----------WIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred EEeeec-cC-------CccCCceEEEEecCCCc----------EEEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 333333 22 22335566677899877 79999999999987754332 233333456777888
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||.. +.+++=++|+-+.+|+
T Consensus 488 HPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred Cccc-chhhhhcccchhhhcC
Confidence 8842 5556666778888875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=218.24 Aligned_cols=294 Identities=18% Similarity=0.250 Sum_probs=223.7
Q ss_pred cceeeEEecCCCCCCCCeEEEEee----cCCC-CCCceeeeeCCC---CCCCCCCccCCCCCCeeEEEcc-CC----CeE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIY----DTDA-DSPSLETHSISL---PASLTPHSQWTPPTRISSLSTS-HQ----SLV 85 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~----D~~~-~~~~l~~w~~~~---~~~~~~~~~~~~~~~v~~v~~~-~~----~~l 85 (343)
.+-..++|+|. ...++++|.. |..- -+.+++||.+.. ....++..++.-..+.+.++|. .+ .++
T Consensus 7 ~Rta~~awSp~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 7 SRTATFAWSPA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred cccceEEecCC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCcccee
Confidence 45678999993 2446666653 3311 134577777732 1224567777777889999998 22 358
Q ss_pred EEEcCCCcEEEEEccC---ceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 86 AASTLSGSLHVLSSAM---QVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~---~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+.|..||.|-+|+... +....+......|.+.|..++|+ ++.+++|+.||.|.+||+.+...+...-.......
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 8888999999999873 33444444455799999999999 77999999999999999987543332211111125
Q ss_pred eEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC---cEE
Q 019258 160 FNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG---TVF 234 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg---~v~ 234 (343)
|.+++|+. .+.|++++.+|++.|||+|. .+++..+..+.+ + ..+..++|||+....++++++|. .|.
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~---~~pii~ls~~~~-~----~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRK---KKPIIKLSDTPG-R----MHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccC---CCcccccccCCC-c----cceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 99999999 88899999999999999999 677777764432 1 44889999999876666777654 499
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccccc
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAEP 312 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~~ 312 (343)
+||+|....|...+ +.|+..|.+|.|++.++. +|+||+.|+.|..|+... -.-++-...
T Consensus 236 lWDlR~assP~k~~----------~~H~~GilslsWc~~D~~---------lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 236 LWDLRFASSPLKIL----------EGHQRGILSLSWCPQDPR---------LLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred eecccccCCchhhh----------cccccceeeeccCCCCch---------hhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 99999988888887 789999999999999987 999999999999999754 223333334
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
..+..+-|.|.+...+.+++-+++|.|++.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeee
Confidence 568888899988889999999999999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=196.95 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=167.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC----CCCC-ccCCCCCCeeEEEcc-C-CCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS----LTPH-SQWTPPTRISSLSTS-H-QSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~----~~~~-~~~~~~~~v~~v~~~-~-~~~l~~~ 88 (343)
.|...|.+++|+| .++++|++||.|+. |++|+++.... ..++ ....|...|.+++|+ . +++|+++
T Consensus 73 GH~~~V~~v~fsP---~d~~~LaSgS~Dgt-----IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 73 GQEGPIIDVAFNP---FDPQKLFTASEDGT-----IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred CCCCCEEEEEEcC---CCCCEEEEEeCCCE-----EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 5888999999999 45679999999975 67999965321 1222 234588899999999 3 4789999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.|+.|+|||+...+.+... ..|...|.+++|+ +..|++++.|++|++||+++++ ....+..|.......+.|.
T Consensus 145 s~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred eCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEc
Confidence 99999999999866544333 3588999999998 8899999999999999999985 4444455554234566787
Q ss_pred C-CCEEEEEe----CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 167 S-PTEFVTGG----FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~-~~~l~t~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+ .+.+++++ .|++|++||++. ...++....... . ..+....|+|++..++++|..||.|++||++.+
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~--~~~p~~~~~~d~--~----~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRK--MASPYSTVDLDQ--S----SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCC--CCCceeEeccCC--C----CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 7 66777765 479999999997 334444333222 1 346667788987655544446999999999985
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
....... ..+..++..++|.|...
T Consensus 293 ~~~~~~~----------~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 293 RLTFCSS----------YSSVEPHKGLCMMPKWS 316 (493)
T ss_pred ceEEEee----------ccCCCCCcceEeccccc
Confidence 5333322 23456778888888643
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=192.21 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=220.2
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC---CCCCeeEEEcc-CCCeE
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT---PPTRISSLSTS-HQSLV 85 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~---~~~~v~~v~~~-~~~~l 85 (343)
++++...|++-|-++..+. ..+++.||+.. .+++||++......++..++ ....|.++... +++.|
T Consensus 411 rq~~tL~HGEvVcAvtIS~----~trhVyTgGkg------cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISN----PTRHVYTGGKG------CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred HhhhhhccCcEEEEEEecC----CcceeEecCCC------eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE
Confidence 3788889999999999999 77888888654 58899997655444555544 34568888887 99999
Q ss_pred EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 86 AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
++|+.-.++.|||+..... .+......-.-.|.+++.+ .+..++|..||.|.+||+.+.. +.+.+.+|.. .+.|+
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtD-GascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD-GASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCC-CceeE
Confidence 9999999999999984322 1111111122357778887 7788899999999999999985 6666677776 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
..+. +..|-||+.|++||.||+|. +..+.+.... ..|+++.++|++.++ +.|-+++.+.+-....++
T Consensus 558 dis~dGtklWTGGlDntvRcWDlre---grqlqqhdF~--------SQIfSLg~cP~~dWl-avGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLRE---GRQLQQHDFS--------SQIFSLGYCPTGDWL-AVGMENSNVEVLHTSKPE 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhh---hhhhhhhhhh--------hhheecccCCCccce-eeecccCcEEEEecCCcc
Confidence 9998 88999999999999999999 6655442211 679999999999875 789999999998887655
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-ccccccceeeec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-AEPCAINSFDID 321 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~~~~~i~s~~~~ 321 (343)
+... ..|+..|.+|.|.+.+. ++++.+.|+.+-.|+.......+. .+..+|.+.|++
T Consensus 626 kyql------------hlheScVLSlKFa~cGk----------wfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 626 KYQL------------HLHESCVLSLKFAYCGK----------WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred ceee------------cccccEEEEEEecccCc----------eeeecCchhhhhhccCccccceeeccccCcceeeeec
Confidence 4333 34999999999999988 899999999999999865543333 446899999999
Q ss_pred CCCCCeeEEccCCceEEEE
Q 019258 322 PQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~ 340 (343)
-++ +++|.|+-+..-.+|
T Consensus 684 ~dd-kyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 684 FDD-KYIVTGSGDKKATVY 701 (705)
T ss_pred cCc-eEEEecCCCcceEEE
Confidence 854 999999877544444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=203.76 Aligned_cols=276 Identities=15% Similarity=0.141 Sum_probs=196.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCCccCC----CCCCeeEEEcc--CCCeEEEEcCCC
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPHSQWT----PPTRISSLSTS--HQSLVAASTLSG 92 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~~~~~----~~~~v~~v~~~--~~~~l~~~s~dg 92 (343)
++++|.-.+ +..-++.++.- .++++.++..... ++.-.+. ..-.+.+|+|. ..++|++++.+|
T Consensus 41 ~~nAIs~nr----~~~qiv~AGrs------~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNR----DINQIVVAGRS------LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecC----CcceeEEeccc------ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 455555556 44445555432 3667777543221 1111111 11246788888 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.|.+||+.....-........|...+++++|+ ..+++|||.||+|+.||++..+... .+.+... .|++++|+|
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-t~~~nSE-SiRDV~fsp~~ 188 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-TFRSNSE-SIRDVKFSPGY 188 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-cccccch-hhhceeeccCC
Confidence 99999998521111111234699999999999 7899999999999999999875333 3333333 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-eee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SIV 246 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~ 246 (343)
++.|+++.+.|.+++||+|+ +.++..++..|. ++|.|+.|||++ ..||+|+.|++|+|||+..++. +..
T Consensus 189 ~~~F~s~~dsG~lqlWDlRq--p~r~~~k~~AH~-------GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQ--PDRCEKKLTAHN-------GPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred CceEEEecCCceEEEeeccC--chhHHHHhhccc-------CceEEEeecCCC-ceeeecCCCccEEEEeccCCCcccee
Confidence 88999999999999999999 677777787776 999999999975 5679999999999999975432 323
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec--CCeEEEEecCCC--cccccc-cccccceeeec
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE--DGILAVVEQGEE--PFELLA-EPCAINSFDID 321 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~--dg~i~~~~~~~~--~~~~~~-~~~~i~s~~~~ 321 (343)
.. .-..+|..|+|-|..+. +|++|+. |-.|++||-... +.-.+. +...+..+.|.
T Consensus 259 tI-----------nTiapv~rVkWRP~~~~---------hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 259 TI-----------NTIAPVGRVKWRPARSY---------HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred EE-----------eecceeeeeeeccCccc---------hhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 22 13478999999999987 8999974 557999997543 333333 34567788887
Q ss_pred CCCCCeeEEccCCceE
Q 019258 322 PQNPSDVICSLEWESI 337 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i 337 (343)
..+...+.+.+.|+.+
T Consensus 319 ~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTV 334 (839)
T ss_pred CCCceeeEeecCccHH
Confidence 6455666666666554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=199.44 Aligned_cols=244 Identities=15% Similarity=0.101 Sum_probs=167.4
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee-ee----eeccCCccccCeEEEEe
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL-LS----VDENSGFHVGPISGVDL 123 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~-~~----~~~~~~~h~~~v~~~~~ 123 (343)
+++|+..... .......|.+.|.+++|+ ++.+|++|+.||.|+||++..... .. ......+|...|.++.|
T Consensus 56 I~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 56 IRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred EEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 5788875432 122334688999999999 368999999999999999974221 10 11122468999999999
Q ss_pred c--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 124 T--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 124 ~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+ +. .+++++.|++|++||++++..... +..+. .|.+++|++ +..|++++.|+.|++||+|+ +..+.++.+
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rs---g~~i~tl~g 207 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-INMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRK---QEIASSFHI 207 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcEEEE-EecCC--cEEEEEECCCCCEEEEEecCCEEEEEECCC---CcEEEEEec
Confidence 9 44 457999999999999998854333 33333 699999999 88888899999999999999 777777877
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecC----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSS----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|.+.... ..+....|++++..++ +++.| ++|++||++....++..... ..+.+.+ .-.|.++..
T Consensus 208 H~g~~~s--~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~l--------d~~~~~L-~p~~D~~tg 275 (568)
T PTZ00420 208 HDGGKNT--KNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSI--------DNASAPL-IPHYDESTG 275 (568)
T ss_pred ccCCcee--EEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEe--------cCCccce-EEeeeCCCC
Confidence 7631100 1233345567766554 54544 47999999976666665421 1122222 223444444
Q ss_pred CCcCCCCCccceEEEecCCeEEEEecCCCccccccc---ccccceeeecCC
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE---PCAINSFDIDPQ 323 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~---~~~i~s~~~~~~ 323 (343)
. .+++|+.|+.|++|+...+....+.+ ..|+.++.+.|+
T Consensus 276 ~---------l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 L---------IYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred C---------EEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 3 78899999999999986443322332 467888898883
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=194.71 Aligned_cols=238 Identities=13% Similarity=0.181 Sum_probs=192.5
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEccCCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
.+.|++|.|+| ++.+|+.|..++. +.|||..+..... .... |.+.|.+++|. ...+.+|+.+|.|..
T Consensus 217 ~~~vtSv~ws~----~G~~LavG~~~g~-----v~iwD~~~~k~~~--~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 217 EELVTSVKWSP----DGSHLAVGTSDGT-----VQIWDVKEQKKTR--TLRGSHASRVGSLAWN-SSVLSSGSRDGKILN 284 (484)
T ss_pred CCceEEEEECC----CCCEEEEeecCCe-----EEEEehhhccccc--cccCCcCceeEEEecc-CceEEEecCCCcEEE
Confidence 68899999999 9999999998875 6799996533221 1223 78999999998 788999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~ 172 (343)
+|++..+.... ...+|...|+.+.|+ +.++++|+.|+.+.+||..... +...+..|.. .|.+++|+| .+.|+
T Consensus 285 ~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~a-AVKA~awcP~q~~lLA 360 (484)
T KOG0305|consen 285 HDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTA-AVKALAWCPWQSGLLA 360 (484)
T ss_pred EEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccce-eeeEeeeCCCccCceE
Confidence 99984433322 245799999999999 9999999999999999996653 4445555666 799999999 77888
Q ss_pred EEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeec
Q 019258 173 TGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 173 t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|+. |+.|++||... +..+..+... ..|+++.|++....++.+ |..+..|.||+..+. .+...+
T Consensus 361 sGGGs~D~~i~fwn~~~---g~~i~~vdtg--------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l- 427 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNT---GARIDSVDTG--------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL- 427 (484)
T ss_pred EcCCCcccEEEEEEcCC---CcEecccccC--------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-
Confidence 8876 99999999988 6666655422 679999999987666555 556788999999873 344444
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|...|..++++|++. .+++++.|.+|++|+...
T Consensus 428 ---------~gH~~RVl~la~SPdg~----------~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 428 ---------LGHTSRVLYLALSPDGE----------TIVTGAADETLRFWNLFD 462 (484)
T ss_pred ---------cCCcceeEEEEECCCCC----------EEEEecccCcEEeccccC
Confidence 68999999999999987 799999999999999754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=169.72 Aligned_cols=280 Identities=10% Similarity=0.053 Sum_probs=208.4
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+....|.++|+-|+++. ++++|.+++.|.... +|-.-+.+. +-...+|.+.|+++... +..+|++|+.
T Consensus 4 i~l~GHERplTqiKyN~----eGDLlFscaKD~~~~-----vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR----EGDLLFSCAKDSTPT-----VWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred cccccCccccceEEecC----CCcEEEEecCCCCce-----EEEecCCce--eeeecCCCceEEEEEecCCcceeeeccc
Confidence 44456889999999999 999999999997654 776632221 23345899999999998 8899999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-----CCCcEEEEECCCC------ceEEEEEcCCCc
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-----EDGRVNLVSVIGG------GEFKRVYDGNGL 157 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-----~dg~v~~wd~~~~------~~~~~~~~~~~~ 157 (343)
|.++++||+..+..+...+ -..+|..+.|+ +++++.+. ..+.|.++|++.. +.+...+..+++
T Consensus 73 D~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred cceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 9999999999877665543 23578999998 66655553 3478999999731 133444455555
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.++.+-|.| +..+++|..||.|..||.++ +..+.. ...|. ..|+.++++|+.. .|++|+.|.+-++
T Consensus 149 -kit~a~Wg~l~~~ii~Ghe~G~is~~da~~---g~~~v~s~~~h~-------~~Ind~q~s~d~T-~FiT~s~Dttakl 216 (327)
T KOG0643|consen 149 -KITSALWGPLGETIIAGHEDGSISIYDART---GKELVDSDEEHS-------SKINDLQFSRDRT-YFITGSKDTTAKL 216 (327)
T ss_pred -ceeeeeecccCCEEEEecCCCcEEEEEccc---Cceeeechhhhc-------cccccccccCCcc-eEEecccCcccee
Confidence 799999999 89999999999999999998 554433 33333 6799999999875 5789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEecCCCc---------
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVEQGEEP--------- 305 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~~~~~~--------- 305 (343)
||+++.+....+. .+.+|++.+++|.... .++-++.+.. +..-......
T Consensus 217 ~D~~tl~v~Kty~------------te~PvN~aaisP~~d~---------VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 217 VDVRTLEVLKTYT------------TERPVNTAAISPLLDH---------VILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred eeccceeeEEEee------------ecccccceecccccce---------EEecCCceeeeeeeecccccchhhhHHHHH
Confidence 9999976666655 5789999999998774 3334444432 3222222111
Q ss_pred -----ccccccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 306 -----FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 306 -----~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
-.+..+-.|||++++|| +|.--.+|++|+.+++.
T Consensus 276 ~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHhccccccccCcceeEECC-CCcccccCCCCceEEEE
Confidence 12223348999999999 67888999999988764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=178.00 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=218.7
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.--.|.++|-.++++|-. +++-+|++++.|+. ..|+-=+. .... -+...|.+.|++.... +..+.++++.|
T Consensus 9 ~c~ghtrpvvdl~~s~it-p~g~flisa~kd~~---pmlr~g~t--gdwi--gtfeghkgavw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPIT-PDGYFLISASKDGK---PMLRNGDT--GDWI--GTFEGHKGAVWSATLNKNATRAASAAAD 80 (334)
T ss_pred EEcCCCcceeEEeccCCC-CCceEEEEeccCCC---chhccCCC--CCcE--EeeeccCcceeeeecCchhhhhhhhccc
Confidence 334688999999999943 68899999999854 22322222 1111 2234789999999888 66677888899
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
-+-++||.-.+.++... .|+--|.+++|+ .+++++|+.+..++++|+++.+.+..-+.+|.. .|..+-|.. .
T Consensus 81 ftakvw~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg-~Ir~v~wc~eD 155 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG-GIRTVLWCHED 155 (334)
T ss_pred chhhhhhhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC-cceeEEEeccC
Confidence 99999998766555333 377789999999 889999999999999999987666666667766 899999987 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+.+++.++|++||+||.|+ +..+.++... .+|+++.++++|+. ++-...+.|++||..+......+-
T Consensus 156 ~~iLSSadd~tVRLWD~rT---gt~v~sL~~~--------s~VtSlEvs~dG~i--lTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRT---GTEVQSLEFN--------SPVTSLEVSQDGRI--LTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred ceEEeeccCCceEEEEecc---CcEEEEEecC--------CCCcceeeccCCCE--EEEecCceeEEeccccccceeecc
Confidence 8899999999999999999 7888776643 67999999999863 355677899999998754433322
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccc--ccccccceeeecCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELL--AEPCAINSFDIDPQNP 325 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~--~~~~~i~s~~~~~~~~ 325 (343)
-...|.+...+|... .++.+++|+.++.+|+.. +..+.+ .++.||.++.++| +|
T Consensus 223 ------------~P~nV~SASL~P~k~----------~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dG 279 (334)
T KOG0278|consen 223 ------------MPCNVESASLHPKKE----------FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DG 279 (334)
T ss_pred ------------CccccccccccCCCc----------eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CC
Confidence 345688889999875 799999999999988753 233443 4478999999999 78
Q ss_pred CeeEEccCCceEEEEe
Q 019258 326 SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 ~~l~~~~~~~~i~~~~ 341 (343)
..-++|++||.|++|-
T Consensus 280 E~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQ 295 (334)
T ss_pred ceeeccCCCceEEEEE
Confidence 9999999999999984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=167.30 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=198.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCCeEEEEcC--CC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQSLVAASTL--SG 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~~l~~~s~--dg 92 (343)
...+|++|.+++ ++.++++++.|.. |++++..+.. .+.++.. .-.|..++|. ....++.++. |.
T Consensus 13 ~~~~i~sl~fs~----~G~~litss~dDs-----l~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSD----DGLLLITSSEDDS-----LRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecC----CCCEEEEecCCCe-----EEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence 467999999999 8999999888854 8899996533 2333333 3467788887 5666666665 88
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCC-
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPT- 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 169 (343)
+|+..++.+++.+... .+|...|++++.+ ++.|+|++.|++|++||++..+ +...+... .-...+|.|.+
T Consensus 81 tIryLsl~dNkylRYF---~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~---~~pi~AfDp~GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYF---PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLS---GRPIAAFDPEGL 153 (311)
T ss_pred ceEEEEeecCceEEEc---CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecC---CCcceeECCCCc
Confidence 9999999977766554 4799999999999 9999999999999999999764 44333322 24467889944
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.++++.....|++||+|+.+ ..|...+....... ...+.+.|+|+|..+++ ++..+.+++.|.-.+.....+.+
T Consensus 154 ifA~~~~~~~IkLyD~Rs~d-kgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFD-KGPFTTFSITDNDE----AEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred EEEEecCCCeEEEEEecccC-CCCceeEccCCCCc----cceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEee
Confidence 45555555599999999821 34555555443222 67999999999987765 57888999999988775555542
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccc-cccccceeeecCCCCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLA-EPCAINSFDIDPQNPS 326 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~-~~~~i~s~~~~~~~~~ 326 (343)
.. ....-+ ....|.|++. ++++|+.||+|.+|+... ....+.. ...++..+-++| .
T Consensus 228 ~~-------~~~~~~-~~a~ftPds~----------Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~ 286 (311)
T KOG1446|consen 228 YP-------NAGNLP-LSATFTPDSK----------FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---R 286 (311)
T ss_pred cc-------CCCCcc-eeEEECCCCc----------EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC---c
Confidence 11 111112 5778999988 799999999999998743 2333333 356777888999 4
Q ss_pred eeEEccCCceEEEE
Q 019258 327 DVICSLEWESIAIV 340 (343)
Q Consensus 327 ~l~~~~~~~~i~~~ 340 (343)
+..-.+.+..+.+|
T Consensus 287 ~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 287 YAMFVSASSNLVFW 300 (311)
T ss_pred eeeeeecCceEEEE
Confidence 54444445566666
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=184.79 Aligned_cols=243 Identities=13% Similarity=0.210 Sum_probs=198.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceee---ee--eccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLL---SV--DENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~---~~--~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
+...+.+.|..|+ ++++|++|+-||.|.+|+..++... .. ....-.|..+|.|++|+ .+.+++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 4456778999999 9999999999999999998644321 11 11112477899999999 788999999999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
|.++++...+++-..|.. +|+|+.|+. +..+++++.|.++++.-+.+ ++.+..+.+|. ..|+.+.|.+
T Consensus 290 Wri~tG~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---GK~LKEfrGHs-------Syvn~a~ft~ 358 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKS---GKCLKEFRGHS-------SYVNEATFTD 358 (508)
T ss_pred EEEecchHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEecccc---chhHHHhcCcc-------ccccceEEcC
Confidence 999999644444335555 899999999 88899999999999999999 89999999887 8899999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
+|.++ ++++.||+|++|+.++.++...+.- .+...+|+.+..-|.++. +++.|-..+++++
T Consensus 359 dG~~i-isaSsDgtvkvW~~KtteC~~Tfk~---------~~~d~~vnsv~~~PKnpe---------h~iVCNrsntv~i 419 (508)
T KOG0275|consen 359 DGHHI-ISASSDGTVKVWHGKTTECLSTFKP---------LGTDYPVNSVILLPKNPE---------HFIVCNRSNTVYI 419 (508)
T ss_pred CCCeE-EEecCCccEEEecCcchhhhhhccC---------CCCcccceeEEEcCCCCc---------eEEEEcCCCeEEE
Confidence 99776 5899999999999998777666542 335678999999999998 9999999999999
Q ss_pred EecCCCcccccc----cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 299 VEQGEEPFELLA----EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 299 ~~~~~~~~~~~~----~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+.......... +....-+..++| .|.++-|.++|+.+|+|+
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSp-kGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecC-CCcEEEEEccCcEEEEEE
Confidence 887654433332 245666677888 689999999999999885
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=165.34 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=181.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC---CCCCCccCCCCCCeeEEEcc----CCCeEEEEc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA---SLTPHSQWTPPTRISSLSTS----HQSLVAAST 89 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s 89 (343)
|...|.+++|+| .+++++|||.|+. +++..+..+. ...-+..-.|.+.|.+++|. .+..++...
T Consensus 88 hkgsiyc~~ws~----~geliatgsndk~-----ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 88 HKGSIYCTAWSP----CGELIATGSNDKT-----IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred cCccEEEEEecC----ccCeEEecCCCce-----EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 445899999999 8999999999965 4455553221 11113334578999999998 223344444
Q ss_pred CCC--cEEEEEccCceeeeeeccCCccccCeEEE-EecCCEEEEEeCCCcEEEEECCCCceEEEEEcC--C----Cccce
Q 019258 90 LSG--SLHVLSSAMQVLLSVDENSGFHVGPISGV-DLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDG--N----GLVGF 160 (343)
Q Consensus 90 ~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~--~----~~~~v 160 (343)
.-| .|++-|...++.+.... +|++-|.++ .|++-.|++|+.|.+|++||++-+. ....... | ++..|
T Consensus 159 gagdc~iy~tdc~~g~~~~a~s---ghtghilalyswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALS---GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred CCCcceEEEeecCCCCcceeec---CCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCccccee
Confidence 444 44444555666555443 688888886 6889999999999999999998764 3333321 1 23479
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 161 NCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
.+++..| +.+|++|-.|....+||+|. ++++..+..|. ..|.|+.|+|. .+++++|+.|-.|++-|+.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg---~r~iq~f~phs-------adir~vrfsp~-a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG---GRMIQRFHPHS-------ADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC---CceeeeeCCCc-------cceeEEEeCCC-ceEEEEecccceEEEeecc
Confidence 9999999 88888888899999999999 89999998776 78999999996 5667899999999999985
Q ss_pred CC---ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 240 WQ---QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 240 ~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.. +.|.... ..|...+.++.|+|+.- -+++.|.|.+..+|-.
T Consensus 304 gdla~el~~~vv----------~ehkdk~i~~rwh~~d~----------sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 304 GDLAHELPIMVV----------AEHKDKAIQCRWHPQDF----------SFISSSADKTATLWAL 348 (350)
T ss_pred cchhhcCceEEE----------EeccCceEEEEecCccc----------eeeeccCcceEEEecc
Confidence 42 3455544 56889999999999976 5899999999999865
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=168.33 Aligned_cols=270 Identities=11% Similarity=0.077 Sum_probs=208.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
.|..+|.+|+|.- ++..|++|+.|+. +.+|++......+......|.+.|-.++|. .+++|++++.|.+
T Consensus 18 ~~~~~v~Sv~wn~----~g~~lasgs~dkt-----v~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 18 GHVQKVHSVAWNC----DGTKLASGSFDKT-----VSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred hhhhcceEEEEcc----cCceeeecccCCc-----eEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 3667899999999 9999999999976 559999654333334445788889999998 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|++||++.......... ++.=.-+.|+ +++++.++.|..|...|.++.+ +...++... .+.-+.|+. ++.
T Consensus 89 ir~wd~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~~--e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFKF--EVNEISWNNSNDL 161 (313)
T ss_pred EEEEEeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccc-eeehhcccc--eeeeeeecCCCCE
Confidence 99999996665544432 1222445555 9999999999999999998874 444433333 377778877 777
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|+.....|.|.|..... -+|+..++.|. ....||.|+|+|++ ||+|+.|-.+-+||+...-+...+.
T Consensus 162 Fflt~GlG~v~ILsyps---Lkpv~si~AH~-------snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is-- 228 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPS---LKPVQSIKAHP-------SNCICIEFDPDGRY-FATGSADALVSLWDVDELICERCIS-- 228 (313)
T ss_pred EEEecCCceEEEEeccc---cccccccccCC-------cceEEEEECCCCce-EeeccccceeeccChhHhhhheeec--
Confidence 77777789999988766 78888888776 66889999999975 6999999999999997655544443
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeE
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.+.=+|..|.|+-++. +|+++|+|..|-+=+-. ....+-.....+.++++|||+ ...|+
T Consensus 229 ---------RldwpVRTlSFS~dg~----------~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~~LLA 288 (313)
T KOG1407|consen 229 ---------RLDWPVRTLSFSHDGR----------MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-RPLLA 288 (313)
T ss_pred ---------cccCceEEEEeccCcc----------eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-Cceee
Confidence 4678999999999988 89999999998775432 222343455678999999994 46666
Q ss_pred EccCC
Q 019258 330 CSLEW 334 (343)
Q Consensus 330 ~~~~~ 334 (343)
.+.|+
T Consensus 289 yA~dd 293 (313)
T KOG1407|consen 289 YACDD 293 (313)
T ss_pred EEecC
Confidence 66654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=173.05 Aligned_cols=235 Identities=19% Similarity=0.264 Sum_probs=178.1
Q ss_pred CCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..|.+++|+ ...+++++|.||+||+|+++... ....+....|.++|.++.|+ |..+++++.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 44679999999 56778899999999999998532 22223334589999999999 899999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-C--CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-P--TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~--~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
++..+ ..|+. +|..+.|.+ . ..|+||+.|++|++||+|+ ..++.++... +.+.+++.-. .
T Consensus 105 -Q~~~v-~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~---~~pv~t~~LP--------eRvYa~Dv~~---p 167 (347)
T KOG0647|consen 105 -QVSQV-AAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS---SNPVATLQLP--------ERVYAADVLY---P 167 (347)
T ss_pred -Ceeee-eeccc-ceeEEEEecCCCcceeEecccccceeecccCC---CCeeeeeecc--------ceeeehhccC---c
Confidence 45544 45666 899999987 3 4799999999999999999 7888887644 4588877643 3
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++.+..++.|.+|+++++........ ..-.-.+.+|+..++.. ..+-||-.|++.+-..+
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~---------SpLk~Q~R~va~f~d~~----------~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIE---------SPLKWQTRCVACFQDKD----------GFALGSIEGRVAIQYID 228 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhc---------CcccceeeEEEEEecCC----------ceEeeeecceEEEEecC
Confidence 677889999999999987654433331 22345689999999877 46899999998764332
Q ss_pred C----Ccccc--cc-------cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 E----EPFEL--LA-------EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~----~~~~~--~~-------~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. ..+.+ .. +.-+||+++|||.- ..++.++.||++.+|++
T Consensus 229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDK 280 (347)
T ss_pred CCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecc
Confidence 2 11111 11 13479999999955 66777777999999975
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=173.74 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=193.6
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc---CCCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS---HQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~---~~~~l~ 86 (343)
+...-.|.+.|..+...- .+.+|||+|.|+. ++|+.+....+..++.+ .+|.|+|..++|. -+.+|+
T Consensus 4 q~idt~H~D~IHda~lDy----ygkrlATcsSD~t-----VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY----YGKRLATCSSDGT-----VKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred eehhhhhhhhhhHhhhhh----hcceeeeecCCcc-----EEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee
Confidence 444446777888777766 7899999999976 66999966555344444 5799999999998 678999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCC--ceEEEEEcCCCccce
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGG--GEFKRVYDGNGLVGF 160 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~--~~~~~~~~~~~~~~v 160 (343)
+++.||.|.||+-..++--...++ ..|.+.|++++|- |-.|++++.||.|.+.+.+.. ....++...|.. .|
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-Gv 152 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GV 152 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-cc
Confidence 999999999999875532222232 3699999999997 778999999999999988653 223334445554 89
Q ss_pred EEEEeCC---C------------CEEEEEeCCCcEEEEEccccCCCC-Cee-EEecccCCCCCcccCeEEEEEcCCC---
Q 019258 161 NCVKWAS---P------------TEFVTGGFGYGLQWWDLRRAGSGG-PVL-QFKGNFGSQGKASGMIHSVDIHPSR--- 220 (343)
Q Consensus 161 ~~~~~~~---~------------~~l~t~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~v~~~p~~--- 220 (343)
++++|.| + .+|++|+-|+.|+||+... .+ ... .+..|. +.|..++|.|.-
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~---~~w~~e~~l~~H~-------dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS---DSWKLERTLEGHK-------DWVRDVAWAPSVGLP 222 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC---cchhhhhhhhhcc-------hhhhhhhhccccCCC
Confidence 9999988 2 4599999999999999977 32 111 244444 899999999974
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
...+|++++||+|.||-.+....+.... ..+.....++.+.|++.+. .|+.++.|+.+.+|+
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~t--------ll~~f~~~~w~vSWS~sGn----------~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKT--------LLEEFPDVVWRVSWSLSGN----------ILAVSGGDNKVTLWK 284 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCccccc--------ccccCCcceEEEEEecccc----------EEEEecCCcEEEEEE
Confidence 4678999999999999877533333321 0144678899999999988 688889999999998
Q ss_pred cCCC
Q 019258 301 QGEE 304 (343)
Q Consensus 301 ~~~~ 304 (343)
.+..
T Consensus 285 e~~~ 288 (299)
T KOG1332|consen 285 ENVD 288 (299)
T ss_pred eCCC
Confidence 8654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=172.98 Aligned_cols=233 Identities=20% Similarity=0.240 Sum_probs=180.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
+....|++|.|+ ..+.|++++.||++++|++...+.... -.|.+++.+++|. ...+++|+-||.|+++|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh----eecCCceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 344679999999 777888889999999999985532211 2488999999998 7899999999999999999873
Q ss_pred eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
...+..|.. ++.|+.+.+ .+.+++|+.|++|++||.|. ..+...+... ..|.+++... +.|+
T Consensus 87 --~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d~~--------kkVy~~~v~g---~~Lv 149 (323)
T KOG1036|consen 87 --EDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRN---KVVVGTFDQG--------KKVYCMDVSG---NRLV 149 (323)
T ss_pred --ceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccc---cccccccccC--------ceEEEEeccC---CEEE
Confidence 333455666 899999999 88999999999999999997 3333333311 4599998864 3567
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE--EecCC
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV--VEQGE 303 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~--~~~~~ 303 (343)
.|+.|..|.+||+|+...+..... ...+-.+.+|++.|... -.+.+|-||++.+ .|..+
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~re---------S~lkyqtR~v~~~pn~e----------Gy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRE---------SSLKYQTRCVALVPNGE----------GYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred EeecCceEEEEEcccccchhhhcc---------ccceeEEEEEEEecCCC----------ceEEEeecceEEEEccCCch
Confidence 899999999999999887774432 33567899999999655 5889999999987 44442
Q ss_pred Cccc----cccc---------ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 EPFE----LLAE---------PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~~~~----~~~~---------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+... +.-+ .-|||+++||| .-+.+++|+.||.|-+|+-
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccC
Confidence 2211 1000 25899999999 4578999999999999974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=184.98 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=189.3
Q ss_pred eeeEEecCC---CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-------------------cCCCCCCeeEEE
Q 019258 21 IDAVRWLPP---LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-------------------QWTPPTRISSLS 78 (343)
Q Consensus 21 i~~v~w~p~---~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-------------------~~~~~~~v~~v~ 78 (343)
.-|+.|.-. ...-++++|.|.+|.+ |.|||+.-.....+.. ...|...|.++.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~-----IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPE-----IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCce-----eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 456677664 3345689999999975 7799984321111111 224777889999
Q ss_pred cc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 79 TS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 79 ~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
|. ..+.|++|+.|.+|++||+...++..... .|.++|.++.|+ ...+++|+.|++|.+.|.+........+.
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 98 66889999999999999999776655543 488999999998 78999999999999999985332333333
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.-. .|-.+.|.+ ...++.+..||+|+-+|+|+ +++++.+++.|. ++|.++++++.-++++++++.|+
T Consensus 328 ~~g--~VEkv~w~~~se~~f~~~tddG~v~~~D~R~--~~~~vwt~~AHd-------~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 328 FDG--EVEKVAWDPHSENSFFVSTDDGTVYYFDIRN--PGKPVWTLKAHD-------DEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred ecc--ceEEEEecCCCceeEEEecCCceEEeeecCC--CCCceeEEEecc-------CCcceEEecCCCCcceeeccccc
Confidence 333 488999998 77899999999999999999 779999999887 88999999999999999999999
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|++|++... .|..... +..--+...+.+++|+.+. .++.++..+.+++|+...
T Consensus 397 ~Vklw~~~~~-~~~~v~~--------~~~~~~rl~c~~~~~~~a~---------~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 397 VVKLWKFDVD-SPKSVKE--------HSFKLGRLHCFALDPDVAF---------TLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eEEEEeecCC-CCccccc--------ccccccceeecccCCCcce---------EEEecCccceEEEeeccc
Confidence 9999998652 2222110 0111234678888999887 888999999999999743
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=171.69 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=168.6
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCce-----ee-----e--eeccCCccccCeEEEEec---CCEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQV-----LL-----S--VDENSGFHVGPISGVDLT---GSECVS 130 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~-----~~-----~--~~~~~~~h~~~v~~~~~~---~~~~~s 130 (343)
-+|.|.|+++... .++++++|+.||.|.+||+.+.. .+ . -...+.+|+..|.++.|. ...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999887 88999999999999999997321 11 1 112345688899999998 778999
Q ss_pred EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC---CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 131 VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS---PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
++-|.++++||+.+-+ ..-.+...+ .|++-+++| .. ++++|..|-+|++.|+.+ +.....+.+|.
T Consensus 120 sSFDhtlKVWDtnTlQ-~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S---Gs~sH~LsGHr----- 188 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQ-EAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS---GSFSHTLSGHR----- 188 (397)
T ss_pred ccccceEEEeecccce-eeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccC---Ccceeeecccc-----
Confidence 9999999999999873 444444444 488888888 23 566667799999999999 77778888887
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc----ccCCccccEEEEEEeecCCCCcCCCC
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV----THSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
+.|.+|.|+|...+++++|+.||.|++||+|........+..+..+.. +..+|.+.|+.++|..++.
T Consensus 189 --~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~------- 259 (397)
T KOG4283|consen 189 --DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR------- 259 (397)
T ss_pred --CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-------
Confidence 779999999999999999999999999999875332222222210000 1257899999999998887
Q ss_pred CccceEEEecCCeEEEEecCCCcc
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
++++|+.|.++++|+......
T Consensus 260 ---~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 260 ---YLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ---hhhhccCccceEEeecccCcc
Confidence 899999999999999755443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=167.90 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=180.1
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC--CCcEEEEECCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE--DGRVNLVSVIG 144 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~--dg~v~~wd~~~ 144 (343)
..+.|+++.|+ ++.+|++++.|..++|||..++....... .++..|..+.|. ...++.++. |.+|+..++.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 36799999999 88999999999999999998665554443 244466666665 666666665 89999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ ..+.+.+|.. .|..++.+| +..|++++.|++|++||+|. .++.-.+.. ..-..++|+|.| .+
T Consensus 90 Nk-ylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~---~~cqg~l~~---------~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 90 NK-YLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRV---KKCQGLLNL---------SGRPIAAFDPEG-LI 154 (311)
T ss_pred Cc-eEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecC---CCCceEEec---------CCCcceeECCCC-cE
Confidence 84 7778888887 899999999 99999999999999999997 444433332 224467899987 57
Q ss_pred EEEEecCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 224 CLAGGSSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+|++.....|++||+|.- ..|.....+. ..-+.++..|.|+|++. .++-+...+.+++.+.-
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-------~~~~~ew~~l~FS~dGK----------~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSIT-------DNDEAEWTDLEFSPDGK----------SILLSTNASFIYLLDAF 217 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccC-------CCCccceeeeEEcCCCC----------EEEEEeCCCcEEEEEcc
Confidence 788888779999999985 4565555322 24467899999999998 67888888899998875
Q ss_pred CCc----cccccccc-ccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEP----FELLAEPC-AINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~----~~~~~~~~-~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+. .+...... --.+..+.| +++++++|++||+|++|+
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEE
Confidence 432 12222222 125667788 679999999999999997
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=179.67 Aligned_cols=280 Identities=16% Similarity=0.159 Sum_probs=202.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC--------------CCCCCcc--CCCCCCeeEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA--------------SLTPHSQ--WTPPTRISSLST 79 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~--------------~~~~~~~--~~~~~~v~~v~~ 79 (343)
+|-..|.+|..+| ++.+..++|-|+. |.-|++.... ...++.. -.|...+.+++.
T Consensus 140 ~H~~s~~~vals~----d~~~~fsask~g~-----i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSP----DDKRVFSASKDGT-----ILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred cccCcceEEEeec----cccceeecCCCcc-----eeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 5777899999999 8889999998864 4456652110 1111111 167788999999
Q ss_pred c-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC
Q 019258 80 S-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG 156 (343)
Q Consensus 80 ~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~ 156 (343)
+ ++.+|++|..|..|.||+..+.+.+.. ..+|.+.|.+++|. ...+++++.|++|++|+++....+..++. |.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG-Hq 286 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG-HQ 286 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC-Cc
Confidence 9 999999999999999999986655544 34799999999998 77899999999999999988754455554 44
Q ss_pred ccceEEEEeCCCCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWASPTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
. .|.++.-.....++|++ .|+++++|++.. +.-..+.++. +.+-|++|-.+. + |++|+.||.|.+
T Consensus 287 d-~v~~IdaL~reR~vtVGgrDrT~rlwKi~e----esqlifrg~~-------~sidcv~~In~~-H-fvsGSdnG~IaL 352 (479)
T KOG0299|consen 287 D-GVLGIDALSRERCVTVGGRDRTVRLWKIPE----ESQLIFRGGE-------GSIDCVAFINDE-H-FVSGSDNGSIAL 352 (479)
T ss_pred c-ceeeechhcccceEEeccccceeEEEeccc----cceeeeeCCC-------CCeeeEEEeccc-c-eeeccCCceEEE
Confidence 4 69999877744455555 899999999955 2222344444 679999998754 3 579999999999
Q ss_pred EEccCCceeeeeecCCCCccccc--CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTH--SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE 311 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~ 311 (343)
|++-+ ..|+......-.....+ ..+..+|++|+..|... .++++|.+|+|++|..... .+.++..
T Consensus 353 Ws~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd----------L~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 353 WSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD----------LLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eeecc-cCceeEeeccccccCCccccccccceeeeEecccCc----------eEEecCCCCceEEEEecCCccccceeee
Confidence 99976 44444332111100000 11224899999999877 8999999999999987554 3333333
Q ss_pred ---ccccceeeecCCCCCeeEEccCC
Q 019258 312 ---PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 312 ---~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
..-||++.|++ +|..+++|--.
T Consensus 422 ls~~GfVNsl~f~~-sgk~ivagiGk 446 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSN-SGKRIVAGIGK 446 (479)
T ss_pred cccccEEEEEEEcc-CCCEEEEeccc
Confidence 46799999998 56777777533
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=175.97 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=163.8
Q ss_pred CCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc------Cceee---------eeeccCCccccCeEEEEec-
Q 019258 62 LTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA------MQVLL---------SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 62 ~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~------~~~~~---------~~~~~~~~h~~~v~~~~~~- 124 (343)
.+......|.+++.+.+|+ ++.++++|+.|-.|+|+|++ ..+++ .+++....|..+|+++.|.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 3444456788999999999 99999999999999999986 11111 2333444688999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 125 -GSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 125 -~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
...+++++.|++|+++|..... +..+.+.... +|.+++|+| +..++.|..-.++++||+.+ .++.......
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTdHp~~rlYdv~T---~QcfvsanPd 257 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTDHPTLRLYDVNT---YQCFVSANPD 257 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecCCCceeEEeccc---eeEeeecCcc
Confidence 8889999999999999997632 2233333333 699999999 88888999999999999988 4443333322
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCcC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~ 279 (343)
. + +.+.|+++.+++.+. +.++|+.||.|++||--..++...+. .+|. .+|.+..|..++.
T Consensus 258 ~--q--ht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~----------~AH~gsevcSa~Ftkn~k---- 318 (430)
T KOG0640|consen 258 D--Q--HTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG----------NAHGGSEVCSAVFTKNGK---- 318 (430)
T ss_pred c--c--cccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH----------hhcCCceeeeEEEccCCe----
Confidence 2 2 338899999999985 67899999999999987766665555 5565 4699999999888
Q ss_pred CCCCccceEEEecCCeEEEEec
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++++.+.|..+++|+.
T Consensus 319 ------yiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 319 ------YILSSGKDSTVKLWEI 334 (430)
T ss_pred ------EEeecCCcceeeeeee
Confidence 8999999999999984
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=189.20 Aligned_cols=217 Identities=10% Similarity=0.044 Sum_probs=155.0
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce-------EEEEEcCCCc
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE-------FKRVYDGNGL 157 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~-------~~~~~~~~~~ 157 (343)
|+.++.+++|+......+... .+|.++|.+++|+ +..|++|+.||+|++||+.++.. +...+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L---~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL---KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE---cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 566888999988754333222 3799999999998 57899999999999999975321 2234455655
Q ss_pred cceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.|.+++|+| .. .+++++.|++|++||++. ++.+..+. +. ..|.+++|+|+|. ++++++.|+.|++
T Consensus 127 -~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~-~~-------~~V~SlswspdG~-lLat~s~D~~IrI 193 (568)
T PTZ00420 127 -KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQIN-MP-------KKLSSLKWNIKGN-LLSGTCVGKHMHI 193 (568)
T ss_pred -cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEe-cC-------CcEEEEEECCCCC-EEEEEecCCEEEE
Confidence 799999999 44 457899999999999998 55555554 22 5699999999986 5678889999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEE-----EEEeecCCCCcCCCCCccceEEEecCC----eEEEEecCC--C
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-----VQYDCHTKSSNISSSRVLPAMFCSEDG----ILAVVEQGE--E 304 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----v~~~p~~~~~~~~~~~~~~l~s~s~dg----~i~~~~~~~--~ 304 (343)
||+|++.....+ .+|.+.+.. ..|++++. ++++++.|+ .|++||... .
T Consensus 194 wD~Rsg~~i~tl-----------~gH~g~~~s~~v~~~~fs~d~~----------~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 194 IDPRKQEIASSF-----------HIHDGGKNTKNIWIDGLGGDDN----------YILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EECCCCcEEEEE-----------ecccCCceeEEEEeeeEcCCCC----------EEEEEEcCCCCccEEEEEECCCCCC
Confidence 999986554433 457665433 33446655 688877774 799999763 2
Q ss_pred cccccccccccce--eeecCCCCCeeEEccCCceEEEEe
Q 019258 305 PFELLAEPCAINS--FDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 305 ~~~~~~~~~~i~s--~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+......+..... ..+++++|.++++|..|+.|++|.
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 2222222222222 123344678999999999999986
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=190.53 Aligned_cols=270 Identities=14% Similarity=0.148 Sum_probs=203.9
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCC-CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeee
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWT-PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLS 106 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~ 106 (343)
+.+++|.||+.|+. |++|++..... ..+...++ |..-|+++..+ +++.|+++|.|-+|++|+..... ..
T Consensus 35 ~~~ryLfTgGRDg~-----i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~ 108 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGI-----IRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TF 108 (735)
T ss_pred CCCceEEecCCCce-----EEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-ch
Confidence 57788999999975 78999954321 12233444 56679999888 78899999999999999998443 22
Q ss_pred eeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce---------EE-EEEcCCCccceEEEEeCC-CCEEE
Q 019258 107 VDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE---------FK-RVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~---------~~-~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
.....+.|...|.|+++- ...++|||-|+.|.+||++++.. .. .+..++.. ++++++.++ +..++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-SIYSLAMNQTGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-ceeeeecCCcceEEE
Confidence 233445799999999993 77889999999999999986521 01 11113333 799999998 77899
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+|+..+.|++||.|+ .+.+..+.+|. .-|..+-.+++|..+ +++++||+|++||++..++...+
T Consensus 188 sGgtek~lr~wDprt---~~kimkLrGHT-------dNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQrCl~T~----- 251 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRT---CKKIMKLRGHT-------DNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQRCLATY----- 251 (735)
T ss_pred ecCcccceEEecccc---ccceeeeeccc-------cceEEEEEcCCCCeE-eecCCCceEEeeeccccceeeeE-----
Confidence 999999999999999 88888898887 779999999999765 69999999999999987666664
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEE
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
..|...||+++.+|+-. .+++|+.||.|+.-+... +..-++.+..||..+..+..+.+. =.
T Consensus 252 ------~vH~e~VWaL~~~~sf~----------~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-Wv 314 (735)
T KOG0308|consen 252 ------IVHKEGVWALQSSPSFT----------HVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WV 314 (735)
T ss_pred ------EeccCceEEEeeCCCcc----------eEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-ee
Confidence 46899999999998766 799999999998866533 333344456778877777433232 33
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
++.+..|.-|+
T Consensus 315 tTtds~I~rW~ 325 (735)
T KOG0308|consen 315 TTTDSSIKRWK 325 (735)
T ss_pred eeccccceecC
Confidence 44455666664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=192.55 Aligned_cols=304 Identities=15% Similarity=0.085 Sum_probs=213.0
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEe--ecCCCCCCceeeeeCCC--------CC--CCCCCccCCCCCCeeE
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAI--YDTDADSPSLETHSISL--------PA--SLTPHSQWTPPTRISS 76 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s--~D~~~~~~~l~~w~~~~--------~~--~~~~~~~~~~~~~v~~ 76 (343)
|+.+.. +.+.|.+|.-+| ++..|+||+ .|+. +.+|+... +. ...+.....|.+.|+|
T Consensus 6 p~wv~H--~~~~IfSIdv~p----dg~~~aTgGq~~d~~-----~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~C 74 (942)
T KOG0973|consen 6 PTWVNH--NEKSIFSIDVHP----DGVKFATGGQVLDGG-----IVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNC 74 (942)
T ss_pred cccccc--CCeeEEEEEecC----CceeEecCCcccccc-----ceeeccccccchhhhhhcccchhheeeccccCceeE
Confidence 444443 334599999999 999999999 6754 44898721 11 1223444578999999
Q ss_pred EEcc-CCCeEEEEcCCCcEEEEEccC---c------------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEE
Q 019258 77 LSTS-HQSLVAASTLSGSLHVLSSAM---Q------------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVN 138 (343)
Q Consensus 77 v~~~-~~~~l~~~s~dg~v~v~~~~~---~------------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~ 138 (343)
+.|+ ++.+||+|+.|+.|.||+... . +.........+|.+.|..+.|+ +.+++++|.|++|.
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 9999 999999999999999999862 0 0112222334699999999999 89999999999999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+|+..+. .....+.+|.+ .|..+.|.| +.+|++-++|++|++|++.. -...+.+..+..+.. -......+.|+
T Consensus 155 iwn~~tF-~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~~~-~~T~f~RlSWS 228 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEESP-LTTFFLRLSWS 228 (942)
T ss_pred EEccccc-eeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEccc---ceeeEeeccchhhCC-CcceeeecccC
Confidence 9999998 56777777877 899999999 99999999999999999755 223333332221110 11458899999
Q ss_pred CCCCeEEEEEecCC---cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC---CCcCC---CCCc-cce
Q 019258 218 PSRKHTCLAGGSSG---TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK---SSNIS---SSRV-LPA 287 (343)
Q Consensus 218 p~~~~~~~sg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---~~~~~---~~~~-~~l 287 (343)
|+|.++...-+-++ ++.|.+=.+-..-..+ -+|.+++..+.|+|.-- ..++. .+-. ..+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-----------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-----------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeee-----------ecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 99987643333222 3555553221222233 46999999999998421 11111 1111 147
Q ss_pred EEEecCCeEEEEecCC-Cccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGE-EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~-~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++||.|++|-+|.... +++-+..+ ..+|..+.|+| +|..|++.+-||.|+++.
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIH 353 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEE
Confidence 7899999999999853 34444444 47899999999 566666666788998764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=169.82 Aligned_cols=236 Identities=15% Similarity=0.237 Sum_probs=181.8
Q ss_pred cCCcccceeeEEecCCC-CCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCC------CccCCCCCCeeEEEcc--CCC
Q 019258 14 RFPQSKYIDAVRWLPPL-SPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTP------HSQWTPPTRISSLSTS--HQS 83 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~-~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~------~~~~~~~~~v~~v~~~--~~~ 83 (343)
.|.|..+++++-|.|.+ ...+++|||++ | .||+|.+..++ ...+ -+..++.+++++..|. +++
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS-D------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc-C------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc
Confidence 37899999999999963 24557777765 4 49999996432 1111 2234567899999999 899
Q ss_pred eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC-ccc
Q 019258 84 LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG-LVG 159 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~-~~~ 159 (343)
++.+.+-|-+..|||++.+..-.+....-+|..+|..++|. -+.|+++|.||.|+++|++......-+++... ..+
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 99999999999999998642211122223699999999998 57899999999999999998654455555544 447
Q ss_pred eEEEEeCC--CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 160 FNCVKWAS--PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
...++|++ .++++|-.. ...|.|.|+|. +..++.++.+|. +.|+.|+|.|....-+.++++|..+.+|
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~--P~tpva~L~~H~-------a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRV--PCTPVARLRNHQ-------ASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecC--CCcceehhhcCc-------ccccceEecCCCCceeeecCCcceEEEE
Confidence 88999998 666666555 67899999999 888999999887 8899999999988888999999999999
Q ss_pred EccCCce-----eeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 237 DLRWQQQ-----SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 237 d~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
|+.+... |.... . -+++|++++|++..+.
T Consensus 316 Dl~q~~~~~~~dPilay----------~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAY----------T-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred ecccccccCCCCchhhh----------h-ccceeeeeeecccCCC
Confidence 9975432 22222 2 4678999999998886
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=171.45 Aligned_cols=236 Identities=12% Similarity=0.077 Sum_probs=183.2
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
....|.-|+|+| ..+.|+.|+.|+. +|+|.++.+ ..+....+|..++++=+|. ++.+++++..||+|+
T Consensus 147 e~~dieWl~WHp----~a~illAG~~DGs-----vWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 147 EVEDIEWLKWHP----RAHILLAGSTDGS-----VWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEEecc----cccEEEeecCCCc-----EEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 456788899999 8999999999974 999999764 3334445789999999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc--------CCCccceEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD--------GNGLVGFNCVKW 165 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--------~~~~~~v~~~~~ 165 (343)
+|+....+++...... ...+..++.++ +..++.|+.++.+++-...+++ +..... .+.. .+.++++
T Consensus 216 ~Wn~ktg~p~~~~~~~--e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~~~~~l~~~~e~-~~esve~ 291 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQA--EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNGTVPELKPSQEE-LDESVES 291 (399)
T ss_pred EEecCCCceeEEeccc--ccCcCCccccccccceeEeccCCccEEEEccccce-EEEecCCCCccccccchh-hhhhhhh
Confidence 9999877665444322 23456677776 8888999999999998887775 443333 1222 3555555
Q ss_pred CC----CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 166 AS----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 166 ~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
.| -.+.++|+-||+|.|||+.. ..++....|. ..|..+.|.++ ..+++++.||.|+.||.|++
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~----~~~R~~c~he-------~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAA----STLRHICEHE-------DGVTKLKWLNT--DYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccchhhcccccceEEEEeccc----chhheeccCC-------CceEEEEEcCc--chheeeccCceEEeeecccc
Confidence 55 45677888899999999977 3334433343 67999999983 34678999999999999998
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+....+ .+|...|.+++++|+.. .++++|.|++.++++-
T Consensus 359 ~l~~~y-----------~GH~~~Il~f~ls~~~~----------~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 359 QLKFTY-----------TGHQMGILDFALSPQKR----------LVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEE-----------ecCchheeEEEEcCCCc----------EEEEecCCCeEEEEec
Confidence 766555 57999999999999987 8999999999999875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=175.09 Aligned_cols=248 Identities=19% Similarity=0.155 Sum_probs=190.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|.+++-+| ++++||||..|+. +.||+..+-+..+. .-.|.+.|.+++|- ....|++++.|..|
T Consensus 200 ~h~keil~~avS~----Dgkylatgg~d~~-----v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 200 GHVKEILTLAVSS----DGKYLATGGRDRH-----VQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASADRSV 268 (479)
T ss_pred cccceeEEEEEcC----CCcEEEecCCCce-----EEEecCcccchhhc--ccccccceeeeeeecCccceeeeecCCce
Confidence 6778899999999 9999999999964 66999965333322 34788999999999 77889999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-CCEEEE-EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVS-VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s-~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
++|+++ .+...+...+|...|.+++.. -..++| ++.|+++++|++... .+.++.++.. .+.|++|.....|+
T Consensus 269 kvw~~~---~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~-sidcv~~In~~Hfv 342 (479)
T KOG0299|consen 269 KVWSID---QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEG-SIDCVAFINDEHFV 342 (479)
T ss_pred EEEehh---HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCC-CeeeEEEeccccee
Confidence 999998 344445556899999999998 445555 559999999999654 4555566665 79999999988999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCC-----cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK-----ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+|+++|.|.+|++-. .+|+......++-... ++.+|++++..|. ..++++|+.+|.|++|-+..+..++..
T Consensus 343 sGSdnG~IaLWs~~K---Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLK---KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred eccCCceEEEeeecc---cCceeEeeccccccCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCccccce
Confidence 999999999999988 7888776544321111 1138999999995 578999999999999988765333333
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+. ...-.+.|++|+|++++.. .++.++....+--|-.
T Consensus 419 l~--------~ls~~GfVNsl~f~~sgk~---------ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 419 LY--------SLSLVGFVNSLAFSNSGKR---------IVAGIGKEHRLGRWWC 455 (479)
T ss_pred ee--------ecccccEEEEEEEccCCCE---------EEEecccccccceeeE
Confidence 21 0225688999999999885 4555676666655543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=187.18 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|...|.++++.. .++.+++||.|.+ +++||... ..|...+. |.+.|.++... +.++++|+.|.+|
T Consensus 247 GH~g~V~~l~~~~----~~~~lvsgS~D~t-----~rvWd~~s---g~C~~~l~gh~stv~~~~~~-~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 247 GHFGGVWGLAFPS----GGDKLVSGSTDKT-----ERVWDCST---GECTHSLQGHTSSVRCLTID-PFLLVSGSRDNTV 313 (537)
T ss_pred CCCCCceeEEEec----CCCEEEEEecCCc-----EEeEecCC---CcEEEEecCCCceEEEEEcc-CceEeeccCCceE
Confidence 4666777777776 6789999999976 67999854 45555544 88888888775 6778888999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTG 174 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~ 174 (343)
++|+++++..+.+.. +|.++|+++..++..+++|+.|++|++||+.+++ +...+.+|.. .|+++.+...+.+++|
T Consensus 314 kVW~v~n~~~l~l~~---~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~-~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLR---GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTG-RVYSLIVDSENRLLSG 388 (537)
T ss_pred EEEeccCcceEEEec---cccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcc-eEEEEEecCcceEEee
Confidence 999999776666553 4999999999999999999999999999999984 7777777776 8999977765889999
Q ss_pred eCCCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 175 GFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
+.|++|++||++. . +++..+.+|. +-+..+.+.. +++++++.||+|++||....+....+.
T Consensus 389 s~D~~IkvWdl~~---~~~c~~tl~~h~-------~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~----- 450 (537)
T KOG0274|consen 389 SLDTTIKVWDLRT---KRKCIHTLQGHT-------SLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLE----- 450 (537)
T ss_pred eeccceEeecCCc---hhhhhhhhcCCc-------cccccccccc---ceeEeccccccEEEeecccCceeeeec-----
Confidence 9999999999999 5 6777777665 5566666543 457899999999999998866655554
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|...|..+++. .. .+++++.||++.+|+...
T Consensus 451 -----~~~~~~v~~l~~~--~~----------~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 451 -----GRHVGGVSALALG--KE----------EILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -----cCCcccEEEeecC--cc----------eEEEEecCCeeEEEeccc
Confidence 2256788888886 23 689999999999998753
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-24 Score=176.92 Aligned_cols=232 Identities=18% Similarity=0.221 Sum_probs=184.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
-.|...|.+++=+ .-..+++|+.||.|++||+...+++.. ..+|.+.|.++.+....++++|.|.+|+.|.++..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEEecccceEEecCCcceeeeeccCC
Confidence 4677789888877 336799999999999999984433322 34799999999999889999999999999998874
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+...+.+.. .+..+.-+. .+.++|+|. .|.|||... ..|+.++.--. ..|.++.|+|....+|
T Consensus 140 --p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---~~Pv~smswG~-------Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 140 --PLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQR---DNPVSSMSWGA-------DSISSVKFNPVETSIL 203 (433)
T ss_pred --cceeeeccc--cccccccccccccccccCc--eeeeccccc---CCccceeecCC-------CceeEEecCCCcchhe
Confidence 555555444 488888777 777888875 689999988 78888877333 6699999999999999
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-- 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-- 302 (343)
++|++|+.|.+||+|+. .|+.... -...-+.|+|+| ... .++++++|-.++.+|..
T Consensus 204 as~~sDrsIvLyD~R~~-~Pl~KVi-----------~~mRTN~IswnP-eaf---------nF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQA-SPLKKVI-----------LTMRTNTICWNP-EAF---------NFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred eeeccCCceEEEecccC-Cccceee-----------eeccccceecCc-ccc---------ceeeccccccceehhhhhh
Confidence 99999999999999984 4443321 234567899999 454 79999999999999864
Q ss_pred CCccccccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+..+... ..+|.++|++| .|+.+++|+-|..|+||+
T Consensus 262 ~~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 262 SRPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred cccchhhcccceeEEEeccCC-CcchhccccccceEEEee
Confidence 333333333 57899999999 789999999999999986
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=169.23 Aligned_cols=277 Identities=16% Similarity=0.137 Sum_probs=201.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-CccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP-HSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.+-|-.|+-.. ..+.+.|+|.|.+ -+||.++. ..| ....+|.|.|++++|+ .+.++++++.|++.
T Consensus 147 HkDGiW~Vaa~~----tqpi~gtASADhT-----A~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 147 HKDGIWHVAADS----TQPICGTASADHT-----ARIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred cccceeeehhhc----CCcceeecccccc-----eeEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 445555555444 4458889999976 45999954 444 4456799999999999 78889999999999
Q ss_pred EEEEcc------C---------ce---------------------eeee-eccCCccccCeEEEEec--CCEEEEEeCCC
Q 019258 95 HVLSSA------M---------QV---------------------LLSV-DENSGFHVGPISGVDLT--GSECVSVGEDG 135 (343)
Q Consensus 95 ~v~~~~------~---------~~---------------------~~~~-~~~~~~h~~~v~~~~~~--~~~~~s~s~dg 135 (343)
+||... . .+ .+.+ .-...+|.+.|.+.+|. ++++++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 999831 0 00 0111 11234688999999998 89999999999
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+..+||++++ .+...+.+|+. .++-++-+| +.++++.+.|.+.++||+|. .-..+..|.+|. ..|+++
T Consensus 295 TAnlwDVEtg-e~v~~LtGHd~-ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHt-------dtVTS~ 363 (481)
T KOG0300|consen 295 TANLWDVETG-EVVNILTGHDS-ELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHT-------DTVTSV 363 (481)
T ss_pred cceeeeeccC-ceeccccCcch-hccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccc-------cceeEE
Confidence 9999999999 47777778877 777778788 88889999999999999997 344555677776 779999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED- 293 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d- 293 (343)
.|.-+. -+++|++|.+|++||+|+.+.|+.... -..+++.++.+...+ ++.--.|
T Consensus 364 vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIR-----------tdS~~NRvavs~g~~-----------iIAiPhDN 419 (481)
T KOG0300|consen 364 VFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIR-----------TDSPANRVAVSKGHP-----------IIAIPHDN 419 (481)
T ss_pred EEecCC--ceeecCCCceEEEeeeccccCcceeee-----------cCCccceeEeecCCc-----------eEEeccCC
Confidence 998864 357999999999999999888887662 357788999987665 4455445
Q ss_pred CeEEEEecCCCccccccc------ccccceeeecCC--CCCeeEEccCCceEEEEe
Q 019258 294 GILAVVEQGEEPFELLAE------PCAINSFDIDPQ--NPSDVICSLEWESIAIVS 341 (343)
Q Consensus 294 g~i~~~~~~~~~~~~~~~------~~~i~s~~~~~~--~~~~l~~~~~~~~i~~~~ 341 (343)
..|+++|.+....-.++. -.-|.+.+|..+ --+.+.||- |..+.=|+
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF-DR~v~gW~ 474 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF-DRMVAGWK 474 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccc-cceeeeeE
Confidence 469999976544333331 133667777532 224455554 55554444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=178.61 Aligned_cols=258 Identities=9% Similarity=0.057 Sum_probs=194.2
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcC--CCcEEEEEccCc-eeeeeeccCCccccCeEEEEec--C
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTL--SGSLHVLSSAMQ-VLLSVDENSGFHVGPISGVDLT--G 125 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~--dg~v~v~~~~~~-~~~~~~~~~~~h~~~v~~~~~~--~ 125 (343)
+++||+.......++-....+..+.+++|...+.|++++. |..+++|.-... .++...+...+. .-.|+... .
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S 91 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQS 91 (673)
T ss_pred eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcc
Confidence 6799996543333332233333499999995555666654 678888876632 123333332222 22333333 6
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 126 SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 126 ~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.++++||..++|++||++.. .+.+....|.+ .|+++.|+. ..++++++..|.|.|..+.+ +..-..|....+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiiih~~~t---~~~tt~f~~~sg-- 164 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAK-LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIIIHGTKT---KQKTTTFTIDSG-- 164 (673)
T ss_pred eeeeccCcCceeeehhhHHH-HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEEEeccc---CccccceecCCC--
Confidence 88999999999999999965 57777777876 999999999 78899999999999999988 444445553322
Q ss_pred CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCc
Q 019258 205 GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRV 284 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~ 284 (343)
..|.-+.++|..++++.+++++|.|.+||... +.|..... +.|.++...|+|+|.+..
T Consensus 165 ----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~---------~~HsAP~~gicfspsne~-------- 222 (673)
T KOG4378|consen 165 ----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFHAS---------EAHSAPCRGICFSPSNEA-------- 222 (673)
T ss_pred ----CeEEEeecccccceeeEeeccCCeEEEEeccC-CCcccchh---------hhccCCcCcceecCCccc--------
Confidence 44778999999999999999999999999875 44444331 789999999999999987
Q ss_pred cceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 285 LPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 285 ~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++.+.|..|+++|.... ....+.-..|..++++.+ +|.+|++|+..|.|+.|+
T Consensus 223 -l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 223 -LLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYD 278 (673)
T ss_pred -eEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeecCCceEEEEe
Confidence 8999999999999998643 445555678999999998 789999999999999886
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=182.58 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=194.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
..|-+..|.| .++++++|...++ |.++++....-. ...-.|.+.|.+++-+ ++..+++|+.|.+|++|
T Consensus 413 ~y~l~~~Fvp----gd~~Iv~G~k~Ge-----l~vfdlaS~~l~--Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 413 GYILASKFVP----GDRYIVLGTKNGE-----LQVFDLASASLV--ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ccEEEEEecC----CCceEEEeccCCc-----eEEEEeehhhhh--hhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 4677888999 7788899877655 779998542222 2223699999999999 88999999999999999
Q ss_pred Ecc--Cce------eeeeeccCC-ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 98 SSA--MQV------LLSVDENSG-FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 98 ~~~--~~~------~~~~~~~~~-~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.. ... .+.+.+... .-...|.|+.++ +.+++.+=-|.+|++|-+++-+-...++ +|.- +|.|+..+
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkL-PV~smDIS 559 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKL-PVLSMDIS 559 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-cccc-ceeEEecc
Confidence 986 110 011110000 013478999998 8888888999999999999975444554 6766 99999999
Q ss_pred C-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 167 S-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 167 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
| +..++||+.|+.|++|-+.- +.+-..+.+|. +.|+++.|.|. .++|.+++.||.|+.||..+.+..+
T Consensus 560 ~DSklivTgSADKnVKiWGLdF---GDCHKS~fAHd-------DSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDF---GDCHKSFFAHD-------DSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred CCcCeEEeccCCCceEEecccc---chhhhhhhccc-------CceeEEEEccc-ceeEEEecCcceEEeechhhhhhhe
Confidence 9 99999999999999999977 88888888887 78999999996 5678899999999999998866655
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
.+ .+|...|++++..|++. +++|+|.|.+|++|+..++.
T Consensus 629 ~L-----------~~H~~ev~cLav~~~G~----------~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 629 KL-----------DGHHSEVWCLAVSPNGS----------FVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ee-----------ccchheeeeeEEcCCCC----------eEEeccCCceeEeeeccCcc
Confidence 55 47999999999999988 89999999999999987654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=171.65 Aligned_cols=256 Identities=18% Similarity=0.200 Sum_probs=188.7
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCc
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGF 113 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~ 113 (343)
++++++...+. .|-+|.+..+... ....-.+++|.++.-+ .+.+|+.|+-.|.+++|.+..+..+.+. .+
T Consensus 51 ~yllsaq~~rp----~l~vw~i~k~~~~--~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~a 121 (476)
T KOG0646|consen 51 EYLLSAQLKRP----LLHVWEILKKDQV--VQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SA 121 (476)
T ss_pred hheeeecccCc----cccccccCchhhh--hhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH---Hh
Confidence 56666654432 5678888543332 1234567899999988 7777777779999999999977665544 36
Q ss_pred cccCeEEEEec--CCEEEEEeCCCcEEEEECCC--------CceEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcE
Q 019258 114 HVGPISGVDLT--GSECVSVGEDGRVNLVSVIG--------GGEFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGL 180 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~--------~~~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i 180 (343)
|...|+++.|+ +.+|+|+|.||.|.+|++.. ...+...+..|.. +|+++...+ ..+++|++.|.++
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-sITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-SITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-eeEEEEecCCCccceEEEecCCceE
Confidence 99999999999 89999999999999998722 2246777777776 899998776 6789999999999
Q ss_pred EEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-ee--eeecCC--CCcc
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SI--VLSGVG--TGEA 255 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~--~~~~~~--~~~~ 255 (343)
++||+.. +..+.++... ..+++++.+|.+.. +..|+++|.|.+.++.+... .. ...+.+ ...-
T Consensus 201 k~wdlS~---g~LLlti~fp--------~si~av~lDpae~~-~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~ 268 (476)
T KOG0646|consen 201 KLWDLSL---GVLLLTITFP--------SSIKAVALDPAERV-VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI 268 (476)
T ss_pred EEEEecc---ceeeEEEecC--------CcceeEEEcccccE-EEecCCcceEEeeehhcCCccccccccccccccccee
Confidence 9999998 7777775533 66999999998765 56899999999999865331 00 000000 0000
Q ss_pred cccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccccccccceeeecC
Q 019258 256 VTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAEPCAINSFDIDP 322 (343)
Q Consensus 256 ~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~ 322 (343)
-+..+|++ +|++++.+-|+. .|++|+.||.+.+||.... . ..+.....+|+.+.+.|
T Consensus 269 ~~~~Gh~~~~~ITcLais~Dgt----------lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGT----------LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eeeccccCCcceeEEEEecCcc----------EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 01256777 999999999887 8999999999999997532 2 33333567788877754
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=159.64 Aligned_cols=252 Identities=13% Similarity=0.187 Sum_probs=179.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC-CCCCCCCccC-CCCCCeeEEEcc---CCCeEEEEcC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQW-TPPTRISSLSTS---HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~-~~~~~~~~~~-~~~~~v~~v~~~---~~~~l~~~s~ 90 (343)
.|.+-|+++.|.+ .|+++||||.|+. +++|++.+ ...+.+...+ .|.+.|..+.|. -++.+++++.
T Consensus 11 ~h~DlihdVs~D~----~GRRmAtCSsDq~-----vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 11 GHKDLIHDVSFDF----YGRRMATCSSDQT-----VKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred CCcceeeeeeecc----cCceeeeccCCCc-----EEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 4668899999999 9999999999975 66999743 2334444443 478999999998 6788999999
Q ss_pred CCcEEEEEccCce------eeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEE---------E
Q 019258 91 SGSLHVLSSAMQV------LLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKR---------V 151 (343)
Q Consensus 91 dg~v~v~~~~~~~------~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~---------~ 151 (343)
|+++.||+-.... .-.......-....|+++.|. |-.+++++.||.|++|+......... +
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999999763111 111111112245689999997 88999999999999999865321111 1
Q ss_pred Ec--CCCccceEEEEeCC----CCEEEEEeCC-----CcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEc
Q 019258 152 YD--GNGLVGFNCVKWAS----PTEFVTGGFG-----YGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 152 ~~--~~~~~~v~~~~~~~----~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~ 217 (343)
.. +.......|+.|++ ...|+.|+.+ +.++||.... .++.... +..+. .+|+.++|.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~rKw~kva~L~d~~-------dpI~di~wA 232 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGRKWLKVAELPDHT-------DPIRDISWA 232 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--CcceeeeehhcCCCC-------Ccceeeeec
Confidence 11 11222688999988 4445555543 3899998765 2323332 33333 899999999
Q ss_pred CCC---CeEEEEEecCCcEEEEEccCCc----------------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 218 PSR---KHTCLAGGSSGTVFAWDLRWQQ----------------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 218 p~~---~~~~~sg~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
|+- .+++|+++.|| |+||.++... .++.... .+..|.++||.+.|+-.+.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs-------~~~~H~~~VWrv~wNmtGt--- 301 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVS-------ELDDHNGEVWRVRWNMTGT--- 301 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEee-------eccCCCCceEEEEEeeeee---
Confidence 974 47899999999 9999997422 1222211 1267999999999998877
Q ss_pred CCCCCccceEEEecCCeEEEEecCC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|.|.++||++++|+...
T Consensus 302 -------iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 302 -------ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -------EEeecCCCceeeehhhhh
Confidence 799999999999998753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=174.36 Aligned_cols=234 Identities=16% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 69 TPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 69 ~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
.....|.+++|+ ++.-++++++- .+.||+........... .-+..|.+++|. |..+++|...|.|+++|+.+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~s---rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFS---RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHH---hhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 445789999999 55566666554 58899876333222111 245678999998 88899999999999999666
Q ss_pred CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
. ...+.+..|.. ++..+.|+| ...|++|++|+.+++||+.. ......+.+|. +.|.|.+++|..++
T Consensus 100 r-~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---a~v~~~l~~ht-------DYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 100 R-VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---AYVQAELSGHT-------DYVRCGDISPANDH 167 (487)
T ss_pred H-HHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCC---cEEEEEecCCc-------ceeEeeccccCCCe
Confidence 4 45666677777 899999999 66788999999999999987 44333566665 88999999999999
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++++|++||+|++||+|....++..+ .|..+|-.|.+-|.+. .+++|+ ...+++||.-
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-----------nhg~pVe~vl~lpsgs----------~iasAg-Gn~vkVWDl~ 225 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-----------NHGCPVESVLALPSGS----------LIASAG-GNSVKVWDLT 225 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-----------cCCCceeeEEEcCCCC----------EEEEcC-CCeEEEEEec
Confidence 99999999999999999864333333 4889999999999876 566554 4579999975
Q ss_pred CCc---ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEP---FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~---~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... .....+...|.++.+.. ++..|++|+-|+.+.+|+
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred CCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEE
Confidence 332 23333578999999998 569999999999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=168.26 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=187.1
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
.+.++... ..+.+++|+.|..+.++|...++.+... .+|...|+.+.++ ...+++++.|..|++|...... ..
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~---~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL---KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP 296 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc---cCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc
Confidence 46666666 4488999999999999999866655444 4799999999999 6778999999999999987764 34
Q ss_pred EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 150 RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.....|+. +|+.+..+| +.+|++++.|++..+.|.++ +..+....... .. -.+++.+|||+| .+|.+|.
T Consensus 297 ~~~~~h~~-~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~---g~~lt~vs~~~-s~----v~~ts~~fHpDg-Lifgtgt 366 (506)
T KOG0289|consen 297 TSSRPHEE-PVTGLSLHPTGEYLLSASNDGTWAFSDISS---GSQLTVVSDET-SD----VEYTSAAFHPDG-LIFGTGT 366 (506)
T ss_pred cccccccc-cceeeeeccCCcEEEEecCCceEEEEEccC---CcEEEEEeecc-cc----ceeEEeeEcCCc-eEEeccC
Confidence 44456666 899999999 99999999999999999999 77666554321 01 459999999997 6899999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccc
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFE 307 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~ 307 (343)
.||.|++||+..+.....+ .+|+++|.+|+|+.++- +|+++++|+.|++||... +...
T Consensus 367 ~d~~vkiwdlks~~~~a~F-----------pght~~vk~i~FsENGY----------~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKF-----------PGHTGPVKAISFSENGY----------WLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred CCceEEEEEcCCccccccC-----------CCCCCceeEEEeccCce----------EEEEEecCCeEEEEEehhhcccc
Confidence 9999999999986533333 57999999999997665 899999999999999753 2332
Q ss_pred ccc--cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LLA--EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+. +...+++++++. .|.+|+.++.+=.||++++
T Consensus 426 t~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred eeeccccccceeEEEcC-CCCeEEeecceeEEEEEec
Confidence 222 235799999987 6799999998888888763
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=173.78 Aligned_cols=245 Identities=14% Similarity=0.188 Sum_probs=175.0
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-eeee-eeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-VLLS-VDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~~~~-~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
...|+++++. .+-+|++|+.|-+|++||+... ..+. ...........|++++|+ ++.|+..+..-..+++|-+..
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 3468899998 8899999999999999999721 1111 111111123378999998 999999998889999996543
Q ss_pred ceEEEEE------------cCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 146 GEFKRVY------------DGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 146 ~~~~~~~------------~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
...++. .+|.. .++|.+|+| ...|+|++.|+++|+||+.. .......++... ++...-++
T Consensus 247 -~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~--~k~q~qVik~k~--~~g~Rv~~ 320 (641)
T KOG0772|consen 247 -EIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN--TKSQLQVIKTKP--AGGKRVPV 320 (641)
T ss_pred -eeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCC--chhheeEEeecc--CCCcccCc
Confidence 233332 23433 799999999 77899999999999999977 333333344222 11122679
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEccCCce-eeeeecCCCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SIVLSGVGTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
+.++|+|++.. ||+|+.||.|.+||.+.... |.... ..+|.. .|++|.|+++++ +|+
T Consensus 321 tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~v---------k~AH~~g~~Itsi~FS~dg~----------~Ll 380 (641)
T KOG0772|consen 321 TSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKV---------KDAHLPGQDITSISFSYDGN----------YLL 380 (641)
T ss_pred eeeecCCCcch-hhhcccCCceeeeecCCcccccceEe---------eeccCCCCceeEEEeccccc----------hhh
Confidence 99999999875 79999999999999865332 22222 167877 899999999998 799
Q ss_pred EEecCCeEEEEecCCCcc-----cccccccccceeeecCCCCCeeEEccCC------ceEEEEeC
Q 019258 289 FCSEDGILAVVEQGEEPF-----ELLAEPCAINSFDIDPQNPSDVICSLEW------ESIAIVSR 342 (343)
Q Consensus 289 s~s~dg~i~~~~~~~~~~-----~~~~~~~~i~s~~~~~~~~~~l~~~~~~------~~i~~~~~ 342 (343)
|-|.|++|++|+...... +-+....+-....|+|++ +.+++|++- +.+++|.+
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEec
Confidence 999999999999754322 222335677888999954 777777643 34666653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=161.15 Aligned_cols=234 Identities=14% Similarity=0.147 Sum_probs=174.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.|...|++|+-+ ++++|+||.|.+ |.|||+....+. -..+.|.+.|+++.|. ....|++|+.||
T Consensus 41 aH~~sitavAVs------~~~~aSGssDet-----I~IYDm~k~~ql--g~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 41 AHAGSITALAVS------GPYVASGSSDET-----IHIYDMRKRKQL--GILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ccccceeEEEec------ceeEeccCCCCc-----EEEEeccchhhh--cceeccccceEEEEecCCcchhheeeecCCC
Confidence 477778888764 468999999965 779999654332 3346789999999999 234899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
.|.+|+...- ....+.++|.+.|+.++++ ++..++.+.|+.+++|++-+++..... .-.. ..+.+.|+| +.
T Consensus 108 ~i~iw~~~~W---~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L~~--~at~v~w~~~Gd 181 (362)
T KOG0294|consen 108 HIIIWRVGSW---ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL-NLKN--KATLVSWSPQGD 181 (362)
T ss_pred cEEEEEcCCe---EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee-ccCC--cceeeEEcCCCC
Confidence 9999999843 3445556899999999998 788889999999999999887533222 2222 244599999 66
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|+.++ .+.|-+|.+.. ......+... ..+.|+.|... ..+++|.+|+.|.+||... ..|....
T Consensus 182 ~F~v~~-~~~i~i~q~d~---A~v~~~i~~~--------~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds-~~~~~~~- 245 (362)
T KOG0294|consen 182 HFVVSG-RNKIDIYQLDN---ASVFREIENP--------KRILCATFLDG--SELLVGGDNEWISLKDTDS-DTPLTEF- 245 (362)
T ss_pred EEEEEe-ccEEEEEeccc---HhHhhhhhcc--------ccceeeeecCC--ceEEEecCCceEEEeccCC-Cccceee-
Confidence 666555 56788999876 3333333311 33777777653 3567999999999999886 5555655
Q ss_pred CCCCcccccCCccccEEEEEEe--ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYD--CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~--p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|+..|.++.+- |++ . +|+|+|.||.|++|+...
T Consensus 246 ---------~AH~~RVK~i~~~~~~~~-~---------~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 246 ---------LAHENRVKDIASYTNPEH-E---------YLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ---------ecchhheeeeEEEecCCc-e---------EEEEeccCceEEEEEccc
Confidence 6899999999853 333 3 899999999999999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=184.39 Aligned_cols=244 Identities=14% Similarity=0.156 Sum_probs=183.1
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC---------------CCCCCC-ccCCCCCCeeEEE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP---------------ASLTPH-SQWTPPTRISSLS 78 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~---------------~~~~~~-~~~~~~~~v~~v~ 78 (343)
-.|...|+||+|+| ++.+||+||.|+- +.+|..... +.+++. ....|.+.|.+++
T Consensus 66 ~~h~~sv~CVR~S~----dG~~lAsGSDD~~-----v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSP----DGSYLASGSDDRL-----VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred ccccCceeEEEECC----CCCeEeeccCcce-----EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 36888999999999 9999999999943 568887520 122232 2346899999999
Q ss_pred cc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc-C
Q 019258 79 TS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD-G 154 (343)
Q Consensus 79 ~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~-~ 154 (343)
|+ ++.+|++++.|++|.||+....+.+... .+|.+.|-.+.|. |++|++-+.|++|++|++.+-. +.+.+. +
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~p 212 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKP 212 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEcccce-eeEeeccc
Confidence 99 8999999999999999999866444433 4799999999999 9999999999999999976632 222221 1
Q ss_pred ----CCccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC------
Q 019258 155 ----NGLVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS------ 219 (343)
Q Consensus 155 ----~~~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~------ 219 (343)
.....+..+.|+| +.+|++.-. -.++.|.+-.. =+.-..+.+|. +++.++.|+|.
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t---Wk~~~~LvGH~-------~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT---WKVDKDLVGHS-------APVEVVRFNPKLFERNN 282 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---ceeeeeeecCC-------CceEEEEeChHHhcccc
Confidence 1223588899999 777776644 44566665432 22223466666 88999999983
Q ss_pred C------C----eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 220 R------K----HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 220 ~------~----~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
. . .++|+|+.|++|-||.... ..|.-.. +......|.+|+|+|++- .|+.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi---------~~lf~~SI~DmsWspdG~----------~Lfa 342 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVI---------HNLFNKSIVDMSWSPDGF----------SLFA 342 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhh---------hhhhcCceeeeeEcCCCC----------eEEE
Confidence 1 1 2889999999999999854 3444332 145678999999999987 7999
Q ss_pred EecCCeEEEEec
Q 019258 290 CSEDGILAVVEQ 301 (343)
Q Consensus 290 ~s~dg~i~~~~~ 301 (343)
||.||+|.++.-
T Consensus 343 cS~DGtV~~i~F 354 (942)
T KOG0973|consen 343 CSLDGTVALIHF 354 (942)
T ss_pred EecCCeEEEEEc
Confidence 999999998653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=157.74 Aligned_cols=234 Identities=14% Similarity=0.128 Sum_probs=173.7
Q ss_pred cCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 67 QWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 67 ~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
...|.+.|++++.+ +.++++|+.|.+|+|||+.....+.... .|.+.|+++.|. ...|++|+.||.|.+|+.
T Consensus 39 ~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll---~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 39 FSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILL---SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhccee---ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 34578899999987 8999999999999999998544333222 489999999998 238999999999999999
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
..= .....+..|.. .|+.++.+| +.+.++.+.|+.+++|++-. ++.-..+... ...+.|.|.|.|.
T Consensus 115 ~~W-~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~---Gr~a~v~~L~--------~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 115 GSW-ELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVR---GRVAFVLNLK--------NKATLVSWSPQGD 181 (362)
T ss_pred CCe-EEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhc---CccceeeccC--------CcceeeEEcCCCC
Confidence 876 46666677777 699999999 88889999999999999987 4433322211 2345599999998
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++.+ +.. ..|-+|-+..... .... .....+.++.|.. .. .|++|.+|+.|.+||.
T Consensus 182 ~F~v-~~~-~~i~i~q~d~A~v-~~~i-----------~~~~r~l~~~~l~--~~---------~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 182 HFVV-SGR-NKIDIYQLDNASV-FREI-----------ENPKRILCATFLD--GS---------ELLVGGDNEWISLKDT 236 (362)
T ss_pred EEEE-Eec-cEEEEEecccHhH-hhhh-----------hccccceeeeecC--Cc---------eEEEecCCceEEEecc
Confidence 6544 343 4788898765322 1111 1123455666653 33 7999999999999998
Q ss_pred CC--Ccccccccccccceeee-cCCCCCeeEEccCCceEEEEeC
Q 019258 302 GE--EPFELLAEPCAINSFDI-DPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 302 ~~--~~~~~~~~~~~i~s~~~-~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+. ...++..+...|-+|.+ ..+.+.+|+++++||.|.||+.
T Consensus 237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 73 23566666777777773 3225689999999999999974
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=168.40 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=178.3
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|..+.+-+ ++..++.++.|+. +++|++...... .+...|...|+++.|. ....+++|+.|.+|++||
T Consensus 221 ~it~~d~d~----~~~~~iAas~d~~-----~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 221 NITSIDFDS----DNKHVIAASNDKN-----LRLWNVDSLRLR--HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred CcceeeecC----CCceEEeecCCCc-----eeeeeccchhhh--hhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 488888888 7888899999976 669999553222 2223599999999999 444499999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d 177 (343)
+......... .-...|.+|..+...++|+-.|++|++||.+... .......+. .|+++..+. +..+++.+.|
T Consensus 290 l~k~~C~kt~----l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg--~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 290 LQKAYCSKTV----LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG--RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhheeccc----cccccccceEecceeeeecccccceEEEeccCCc-eeeEeecCc--ceeeEeeccCCeEEeeecCC
Confidence 9854332211 1234567777667788999999999999999985 444445555 599999988 8889999999
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVT 257 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 257 (343)
.++.+.|+|. .+....+.... -+.. .-.+.+.|+|++.+ +++|+.||.|+||++.++.....+.
T Consensus 363 dtl~viDlRt---~eI~~~~sA~g-~k~a--sDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~--------- 426 (459)
T KOG0288|consen 363 DTLKVIDLRT---KEIRQTFSAEG-FKCA--SDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLS--------- 426 (459)
T ss_pred Cceeeeeccc---ccEEEEeeccc-cccc--cccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEec---------
Confidence 9999999998 33333333221 1111 34899999999864 6899999999999998865554444
Q ss_pred cCCcc-ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 258 HSLSE-SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 258 ~~~h~-~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..+. ..|+++.|+|.+. .|++++.++.+.+|.
T Consensus 427 -~s~s~~aI~s~~W~~sG~----------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 -LSTSNAAITSLSWNPSGS----------GLLSADKQKAVTLWT 459 (459)
T ss_pred -cCCCCcceEEEEEcCCCc----------hhhcccCCcceEecC
Confidence 2233 3899999999887 799999999999883
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=167.46 Aligned_cols=294 Identities=13% Similarity=0.086 Sum_probs=197.7
Q ss_pred CcccceeeEEecCCCCCCC-CeEEEEeecCCCCCCceeeeeCC--CCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcC
Q 019258 16 PQSKYIDAVRWLPPLSPLS-KLAVLAIYDTDADSPSLETHSIS--LPASLTPHSQWTPPTRISSLSTS--HQSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~-~~l~t~s~D~~~~~~~l~~w~~~--~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~ 90 (343)
.+..+|.+++|+|+ .+ .+++.|..-++++ +|++. ++.........+|.++|.++.|+ +...+++.|.
T Consensus 184 v~~~Rit~l~fHPt---~~~~lva~GdK~G~VG-----~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPT---ENRKLVAVGDKGGQVG-----LWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEeccc---CcceEEEEccCCCcEE-----EEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 46688999999993 44 7777776666655 99994 22223334456788999999999 8889999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
||+|++-|++....-.+.... .-.....+++++ ...++.+..=|...+||++++..-...+.-|.. .|..++++|
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPV 333 (498)
T ss_pred CceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCC
Confidence 999999999843211111110 122345677777 667778888789999999986543444444555 799999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCC-CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc---CCc
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGG-PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR---WQQ 242 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~---~~~ 242 (343)
...++|++.|++.+|||+|+=+... |+.....|. ..|+++.|+|.+.. +++-+.|..|+|||.. ...
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr-------rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR-------RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceeccccc-------ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccC
Confidence 7789999999999999999711111 222222232 67999999999877 6788999999999984 223
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccccc-cccccee-
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAE-PCAINSF- 318 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~-~~~i~s~- 318 (343)
.|....... +. .+.--......|.|+.. +++.+-.-..|-+++...+. .++... ...|.++
T Consensus 406 ~p~~~I~Hn-~~----t~RwlT~fKA~W~P~~~----------li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn 470 (498)
T KOG4328|consen 406 EPLGTIPHN-NR----TGRWLTPFKAAWDPDYN----------LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVN 470 (498)
T ss_pred Cccceeecc-Cc----ccccccchhheeCCCcc----------EEEEeccCcceeEEcCCCCEEeeeccCccccccccce
Confidence 333332100 00 01112346678999766 78888888889999876544 343332 2234333
Q ss_pred eecCCCCCeeEEccCCceEEEEeC
Q 019258 319 DIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+||-+...++.|+..|.||+|+.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 678843224444556689999874
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=192.22 Aligned_cols=256 Identities=16% Similarity=0.162 Sum_probs=195.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---CCCCCC-CccCCCCCCeeEEEcc--CCCe
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---PASLTP-HSQWTPPTRISSLSTS--HQSL 84 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---~~~~~~-~~~~~~~~~v~~v~~~--~~~~ 84 (343)
.+-.+....+-++++|.+.......++|.|..|+. |-+|+... ...... ...-.|.|.|..+.|+ .+++
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~-----I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGN-----IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCc-----eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCce
Confidence 45555667788999999943222246888888876 55998843 222222 2334689999999999 6679
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN 161 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 161 (343)
|++|++||.|.|||+.+.+...... ...-...|.+++|+ ...|++++.+|++.+||++..+.+..+-.......+.
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 9999999999999998543221111 11244689999999 7789999999999999999876666665544434688
Q ss_pred EEEeCC--CCEEEEEeCCC---cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 162 CVKWAS--PTEFVTGGFGY---GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 162 ~~~~~~--~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.++|+| ...+++++.|. .|.+||+|. ...+++.+.+|. ..|.++.|++.+..++++++.|++|.+|
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~--assP~k~~~~H~-------~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRF--ASSPLKILEGHQ-------RGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccc--cCCchhhhcccc-------cceeeeccCCCCchhhhcccCCCCeeEe
Confidence 999999 66777777744 599999998 566777777776 6699999999998899999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+..+++..-.+. ....++..+.|+|.++. .++.+|-||.|-++..
T Consensus 282 N~~tgEvl~~~p-----------~~~nW~fdv~w~pr~P~---------~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 282 NPNTGEVLGELP-----------AQGNWCFDVQWCPRNPS---------VMAAASFDGKISIYSL 326 (1049)
T ss_pred cCCCceEeeecC-----------CCCcceeeeeecCCCcc---------hhhhheeccceeeeee
Confidence 999865544443 35688999999999997 8888999999988764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=163.62 Aligned_cols=243 Identities=17% Similarity=0.180 Sum_probs=178.5
Q ss_pred CccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCc-------e------eeeeeccCCccccCeEEEEec---C
Q 019258 65 HSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQ-------V------LLSVDENSGFHVGPISGVDLT---G 125 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~-------~------~~~~~~~~~~h~~~v~~~~~~---~ 125 (343)
....+|.+.++.+.-. +..+.++-+..|.|+||++... . .........+|.+.=.+++|+ .
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3446677777777665 5566777778999999998510 0 001111234688888999998 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 126 SECVSVGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 126 ~~~~s~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
..++||..-+.|++|...++.-.. .-+..|.. .|-.++|+| .+.|++|+-|++|+|||+|.+. .++....+.|.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-~~~~~~~kAh~ 302 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-KKAAVSTKAHN 302 (440)
T ss_pred cccccCccccceEeeeeccCceeecCcccccccc-chhhhccCCccCceEEeeecCceEEEEEecCCC-ccceeEeeccC
Confidence 668888888999999987753111 11223555 799999999 7889999999999999999921 12222234443
Q ss_pred CCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 202 GSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
+-|+-|.|+...+ +||+|++||+++|||+|+. .+|+... +.|..+|++|.|+|....
T Consensus 303 -------sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~f----------k~Hk~pItsieW~p~e~s--- 361 (440)
T KOG0302|consen 303 -------SDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATF----------KYHKAPITSIEWHPHEDS--- 361 (440)
T ss_pred -------CceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeE----------EeccCCeeEEEeccccCc---
Confidence 6799999998766 8899999999999999974 3455555 779999999999999887
Q ss_pred CCCCccceEEEecCCeEEEEecCCCcc---------c--------cccc---ccccceeeecCCCCCeeEEccCCce
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQGEEPF---------E--------LLAE---PCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~~~~~---------~--------~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
.++++++|..|.+||...+.. + |+.- ..-+.-+.||++.+.+||+.+-+|.
T Consensus 362 ------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 362 ------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 899999999999999642221 1 2211 2457889999999999999987753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=154.79 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=185.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~ 143 (343)
..|.+.|.+++|. ++..|++|+.|+++.+|++.... +......++|.+.|-.+.|. .+.|++++.|.+|++||++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 4577899999999 99999999999999999998542 22223345799999999998 7899999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+++...++.. ... -.-+.|+| +.+++.++.|..|.+.|.|. .+.....+.. -.++-+.|+-++ +
T Consensus 96 ~~k~~~~i~~-~~e--ni~i~wsp~g~~~~~~~kdD~it~id~r~---~~~~~~~~~~--------~e~ne~~w~~~n-d 160 (313)
T KOG1407|consen 96 SGKCTARIET-KGE--NINITWSPDGEYIAVGNKDDRITFIDART---YKIVNEEQFK--------FEVNEISWNNSN-D 160 (313)
T ss_pred cCcEEEEeec-cCc--ceEEEEcCCCCEEEEecCcccEEEEEecc---cceeehhccc--------ceeeeeeecCCC-C
Confidence 9975555543 332 33567788 88999999999999999998 5555444322 457888888554 4
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+|+.-...|+|.|..... -+|+..+ ++|.....+|.|+|++. ++++||.|..+-+||..
T Consensus 161 ~Fflt~GlG~v~ILsyps-Lkpv~si----------~AH~snCicI~f~p~Gr----------yfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPS-LKPVQSI----------KAHPSNCICIEFDPDGR----------YFATGSADALVSLWDVD 219 (313)
T ss_pred EEEEecCCceEEEEeccc-ccccccc----------ccCCcceEEEEECCCCc----------eEeeccccceeeccChh
Confidence 555556779999998775 4555555 78999999999999998 89999999999999987
Q ss_pred CCccccc--ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELL--AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~--~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+..=+.. ...=||..+.|+- +|++|++|++|..|.|-+
T Consensus 220 ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 220 ELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAE 259 (313)
T ss_pred HhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEe
Confidence 6442222 2256899999986 679999999999887643
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-20 Score=161.25 Aligned_cols=270 Identities=13% Similarity=0.115 Sum_probs=197.5
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC--CCCCeeEEEccCCCeEEEEcCCCcEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT--PPTRISSLSTSHQSLVAASTLSGSLHVL 97 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~s~dg~v~v~ 97 (343)
-|....|+| .+.++++|.+.- .|..|+.....-.+....++ ....|.|++|.++...++|.++|.|.||
T Consensus 202 ~v~~a~FHP---td~nliit~Gk~------H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw 272 (626)
T KOG2106|consen 202 VVFLATFHP---TDPNLIITCGKG------HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIW 272 (626)
T ss_pred eEEEEEecc---CCCcEEEEeCCc------eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEE
Confidence 456778999 578888888643 47799885543222222222 2257999999977779999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc-----------eEEEEE-------------
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG-----------EFKRVY------------- 152 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~-----------~~~~~~------------- 152 (343)
+....+-.. .. .+|.+.|.++..- ...++||+.|+.|..||-.-.+ .++.+.
T Consensus 273 ~~~~~~~~k-~~--~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 273 SKGTNRISK-QV--HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred eCCCceEEe-Ee--eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 986433222 22 2699999999988 7788889999999999842110 111111
Q ss_pred ---------------cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 153 ---------------DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 153 ---------------~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
..|.. ....++.+| .++++|++.|+.+++|+ . .++..+.... .+..|++|
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~---~k~~wt~~~~--------d~~~~~~f 415 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--D---HKLEWTKIIE--------DPAECADF 415 (626)
T ss_pred eEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--C---CceeEEEEec--------CceeEeec
Confidence 12222 466778888 88999999999999999 3 3444442211 77999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
||.+ .++.|+..|...+.|..+ +..+.+- .. ..+++.|+|+|++. +|+.+|.|+.|
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~----------~d-~~~ls~v~ysp~G~----------~lAvgs~d~~i 471 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTET-QDLVTIH----------TD-NEQLSVVRYSPDGA----------FLAVGSHDNHI 471 (626)
T ss_pred cCcc--eEEEeeccceEEEEeccc-ceeEEEE----------ec-CCceEEEEEcCCCC----------EEEEecCCCeE
Confidence 9998 678999999999999988 3333332 23 78999999999998 79999999999
Q ss_pred EEEecCCCc--cccccc--ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 297 AVVEQGEEP--FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 297 ~~~~~~~~~--~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+++.-...- ...... ..+|..+||++ +++++.+-+-|-.|-.|
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEE
Confidence 998754332 222222 37899999999 56999999888888888
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=175.06 Aligned_cols=233 Identities=14% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEec---CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLT---GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~---~~~~~s~s~dg~v~~wd~~ 143 (343)
..|...|..++..++..+++++.||++++|+-...+.+...... .|.+-|.. +++. ...+++|+.|.++.+|...
T Consensus 11 ~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 46788888888877778999999999999998655444323222 45565555 5554 4569999999999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+. .+..++.+|.+ .|.+++......+++|+.|.++++|-. ++....+.+|. ..|.++..-|.+ .
T Consensus 90 ~~-~P~~~LkgH~s-nVC~ls~~~~~~~iSgSWD~TakvW~~-----~~l~~~l~gH~-------asVWAv~~l~e~--~ 153 (745)
T KOG0301|consen 90 QA-EPLYTLKGHKS-NVCSLSIGEDGTLISGSWDSTAKVWRI-----GELVYSLQGHT-------ASVWAVASLPEN--T 153 (745)
T ss_pred CC-Cchhhhhcccc-ceeeeecCCcCceEecccccceEEecc-----hhhhcccCCcc-------hheeeeeecCCC--c
Confidence 98 47777778887 899998776555999999999999977 34445566665 889999999975 6
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+.|.+|++|.-.+ ....+ .+|+..|..+++-+++ .++||+.||.|+.|+...
T Consensus 154 ~vTgsaDKtIklWk~~~---~l~tf----------~gHtD~VRgL~vl~~~-----------~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGGT---LLKTF----------SGHTDCVRGLAVLDDS-----------HFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred EEeccCcceeeeccCCc---hhhhh----------ccchhheeeeEEecCC-----------CeEeecCCceEEEEeccC
Confidence 78999999999997632 23333 5799999999999875 479999999999999954
Q ss_pred C-cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 E-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+ ..+...+..-|++++... +++.++|.++|++++||+.
T Consensus 210 e~l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ceeeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeec
Confidence 4 445555567799999555 3489999999999999985
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=154.41 Aligned_cols=256 Identities=15% Similarity=0.140 Sum_probs=181.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCC--CCceeeeeCCCCCC------CCCCccCC--CCCCeeEEEcc-CCCeEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDAD--SPSLETHSISLPAS------LTPHSQWT--PPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~--~~~l~~w~~~~~~~------~~~~~~~~--~~~~v~~v~~~-~~~~l~~ 87 (343)
..|-+++-+| -+.+.|+|+-.|.... .-...||.++++.. .++++.++ +-+.|.|+.|. +.+.+++
T Consensus 64 gEvw~las~P---~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 64 GEVWDLASSP---FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cceehhhcCC---CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3455566666 4567777776543211 12357999976532 34444444 44789999999 6666666
Q ss_pred EcCCCcEEEEEccCceee--ee-eccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 88 STLSGSLHVLSSAMQVLL--SV-DENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~--~~-~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
-. |..|.+|++.+...+ .+ ......|....++-.|+ ++.++ ...|+++..||+++.++...+...|.. .+
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq-~v 217 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQ-RV 217 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcc-ee
Confidence 54 889999999854332 11 11122355566777777 44444 456889999999987666666666655 79
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 161 NCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 161 ~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
..+.|+| +..|+++++|+.|+|||+|. ...|+..+..|. .+|.+|.|+|....++++|+.|..|.+|.+
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~--tk~pv~el~~Hs-------HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRK--TKFPVQELPGHS-------HWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccC--CCccccccCCCc-------eEEEEEEecCccceEEEecCCCceeEEEec
Confidence 9999999 77899999999999999999 677888888776 889999999998899999999999999976
Q ss_pred cCCce--------------------eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 239 RWQQQ--------------------SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 239 ~~~~~--------------------~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
..-.. ....+. -+....+..|+..|++++|+.-++- .+++-|.||++.+
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~--dg~l~tydehEDSVY~~aWSsadPW---------iFASLSYDGRviI 357 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQ--DGQLETYDEHEDSVYALAWSSADPW---------IFASLSYDGRVII 357 (370)
T ss_pred cccccccccccccccccCcchhhHHhccccc--ccccccccccccceEEEeeccCCCe---------eEEEeccCceEEe
Confidence 43210 000000 0111133679999999999998886 6889999999977
Q ss_pred Ee
Q 019258 299 VE 300 (343)
Q Consensus 299 ~~ 300 (343)
=+
T Consensus 358 s~ 359 (370)
T KOG1007|consen 358 SS 359 (370)
T ss_pred ec
Confidence 43
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=167.41 Aligned_cols=258 Identities=11% Similarity=0.132 Sum_probs=188.7
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEc
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSS 99 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~ 99 (343)
|..+.|.. .++|++++..++. .+++|.-..+....+.........-.|+... ...++++|+..+.|+|||+
T Consensus 37 ~~s~~w~~-----~n~lvvas~~gdk---~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 37 DFSFNWQR-----RNFLVVASMAGDK---VMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred ceeeeccc-----cceEEEeecCCce---eEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhh
Confidence 99999998 4447777765542 3568876443211111111111122333333 3488999999999999999
Q ss_pred cCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEe
Q 019258 100 AMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGG 175 (343)
Q Consensus 100 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~ 175 (343)
.. -.+.+..+.|+..|+++.++ +++|++++..|-|.+..+.++.....+...... .+.-+.|++ ..+|.+++
T Consensus 109 ~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 109 RA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred HH---HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeec
Confidence 82 23345566899999999999 899999999999999999887433333322222 578999999 66788999
Q ss_pred CCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
++|.|.+||+.. ..|+..+. .|. +|...|+|+|..+.+|++-+.|.+|.+||.+.....-.+.
T Consensus 185 d~G~VtlwDv~g---~sp~~~~~~~Hs-------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------ 248 (673)
T KOG4378|consen 185 DKGAVTLWDVQG---MSPIFHASEAHS-------APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------ 248 (673)
T ss_pred cCCeEEEEeccC---CCcccchhhhcc-------CCcCcceecCCccceEEEecccceEEEeecccccccceee------
Confidence 999999999977 56665543 333 8899999999999999999999999999998643333332
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccccc-cccccceeeecC
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLA-EPCAINSFDIDP 322 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~-~~~~i~s~~~~~ 322 (343)
...+...|+|.+++. +|+.|+..|+|+.||... .+..+++ +...|.+++|.+
T Consensus 249 ------y~~Plstvaf~~~G~----------~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 249 ------YSHPLSTVAFSECGT----------YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ------ecCCcceeeecCCce----------EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 567899999999987 799999999999998643 3334444 356799999987
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=174.03 Aligned_cols=243 Identities=15% Similarity=0.192 Sum_probs=192.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
.|.+.|+.+.-.. +++.|+++|.|-+ +++|+..........+.-+|...|.|+++. +..++++|+.|+.
T Consensus 71 ~HsDWVNDiiL~~----~~~tlIS~SsDtT-----VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 71 HHSDWVNDIILCG----NGKTLISASSDTT-----VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK 141 (735)
T ss_pred hhHhHHhhHHhhc----CCCceEEecCCce-----EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence 4556666666655 7889999999965 669999665422223334688999999994 7789999999999
Q ss_pred EEEEEccCce--------eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 94 LHVLSSAMQV--------LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 94 v~v~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
|.+||++... .+.......++..+|.+++.+ +..|++|+..+.+++||.++.++..++. +|.. .|.++
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTd-NVr~l 219 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTD-NVRVL 219 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-cccc-ceEEE
Confidence 9999998431 122222223688899999999 7799999999999999999987777775 6666 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
-.++ +.++++++.||+|++||+++ .+++.++..|. ..|.++..+|+-.+ +.+|+.||.|..=|+|+..
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgq---QrCl~T~~vH~-------e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQ---QRCLATYIVHK-------EGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeeccc---cceeeeEEecc-------CceEEEeeCCCcce-EEecCCCCcEEecccCCch
Confidence 9999 99999999999999999999 89999988876 55999999998655 5799999999999999864
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
....+. ..+.+|..+..+.+.. .+..++.|+.|+-|..
T Consensus 289 ~~tlic-----------k~daPv~~l~~~~~~~----------~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 289 KSTLIC-----------KEDAPVLKLHLHEHDN----------SVWVTTTDSSIKRWKL 326 (735)
T ss_pred hheEee-----------cCCCchhhhhhccccC----------CceeeeccccceecCC
Confidence 444333 2356788888887666 4688999999998874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=157.94 Aligned_cols=237 Identities=13% Similarity=0.190 Sum_probs=188.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEEC--
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSV-- 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~-- 142 (343)
.+|...|+.++-. ..+.+.+++.|.+.+||.++.+..+... .+|.+.|+++.|+ +..+++++.|++-.+|..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 4677889888877 5668899999999999999977665443 4799999999998 888899999999999972
Q ss_pred ----CCC---------------------------------ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEE
Q 019258 143 ----IGG---------------------------------GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 143 ----~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd 184 (343)
..+ ..+...+.+|.. .|.+..|.. +..+++++.|.+-.+||
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeee
Confidence 110 011222334444 677788877 88999999999999999
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcccc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
++. ++++..+.+|. ...+-++-||.+ .++++.+.|-+.++||+|..-..+..+ ++|...
T Consensus 301 VEt---ge~v~~LtGHd-------~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VF----------QGHtdt 359 (481)
T KOG0300|consen 301 VET---GEVVNILTGHD-------SELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVF----------QGHTDT 359 (481)
T ss_pred ecc---CceeccccCcc-------hhccccccCCcc-eEEEEeccCceeEeccchhhcceeeee----------cccccc
Confidence 999 88888898887 567778889986 577899999999999999655555555 789999
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.++.|..+. .++++|+|.+|++|+..... .-.+....++|.++++. .+..++---|+.-|++|+
T Consensus 360 VTS~vF~~dd-----------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 360 VTSVVFNTDD-----------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred eeEEEEecCC-----------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEe
Confidence 9999999875 48999999999999986543 33344578999999996 335677777888888875
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-20 Score=150.76 Aligned_cols=254 Identities=12% Similarity=0.077 Sum_probs=174.6
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-ceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
.|..-|.++.|. .+++++++++|++|+|||... .........-+.|.+.|..+.|- |+.+++|+.|+++.+|.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 566779999999 999999999999999999752 23333333334799999999997 999999999999999975
Q ss_pred CC------C-ceE-EEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeE------EecccCCCC
Q 019258 143 IG------G-GEF-KRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ------FKGNFGSQG 205 (343)
Q Consensus 143 ~~------~-~~~-~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~ 205 (343)
.. + .-. +..+....+ .|++++|.| +-.+++++.||.||||+.-. +.. +.+ +.......+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d--p~n-Ls~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPD--PMN-LSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred cccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCC--ccc-cccchhhhhhhhccCCcc
Confidence 21 1 111 122222333 799999999 66799999999999998754 211 111 110000011
Q ss_pred CcccCeEEEEEcCCC--CeEEEEEecC-----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 206 KASGMIHSVDIHPSR--KHTCLAGGSS-----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~--~~~~~sg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
.+..+-.|+.|+|.. +.+||.|+.+ +.++||............ .....|..+|.+|+|.|.-..
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv-------a~L~d~~dpI~di~wAPn~Gr-- 237 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV-------AELPDHTDPIRDISWAPNIGR-- 237 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee-------hhcCCCCCcceeeeeccccCC--
Confidence 122668899999864 4567777766 479999765433111111 012579999999999997442
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCc------------------cc----ccccccccceeeecCCCCCeeEEccCCce
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEP------------------FE----LLAEPCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~------------------~~----~~~~~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
..-.|++++.|| |++|+-.... .+ +-.+.+.|.++.|+= .|..|.+++|||.
T Consensus 238 ----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~ 311 (361)
T KOG2445|consen 238 ----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGC 311 (361)
T ss_pred ----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCce
Confidence 222688999999 9998754210 01 111236788888875 5799999999999
Q ss_pred EEEEe
Q 019258 337 IAIVS 341 (343)
Q Consensus 337 i~~~~ 341 (343)
+++|+
T Consensus 312 VRLWk 316 (361)
T KOG2445|consen 312 VRLWK 316 (361)
T ss_pred eeehh
Confidence 99986
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=162.65 Aligned_cols=281 Identities=16% Similarity=0.114 Sum_probs=204.2
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
.+..|.+|+++. +.+.||.+=.|+. |++|++...-..++.-..+....|.+++|+++..|++.+.+|.|.-
T Consensus 24 ~Ps~I~slA~s~----kS~~lAvsRt~g~-----IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 24 KPSEIVSLAYSH----KSNQLAVSRTDGN-----IEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITE 94 (691)
T ss_pred eccceEEEEEec----cCCceeeeccCCc-----EEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEE
Confidence 346788888888 5555777766654 8899996543323333335567899999998899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-EEEcCCCccceEEEEeCC-CCEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK-RVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
||+.+........ ...+.|.+++.+ +..++.+++||.+...+...++-.. +.+....+ .+.+++|++ ...++
T Consensus 95 wDl~~lk~~~~~d---~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s-RvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 95 WDLHTLKQKYNID---SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS-RVLSLSWNPTGTKIA 170 (691)
T ss_pred EecccCceeEEec---CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc-eEEEEEecCCccEEE
Confidence 9998655443332 245789999999 7888899999988888877764222 33333333 799999999 66799
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecc-cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGN-FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+|+.||.|++||... +..+...... .+..+-...-|.++.+-.+ ..+++|.+-|+|++||...+.....+
T Consensus 171 ~Gs~Dg~Iriwd~~~---~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~---- 241 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKS---GQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH---- 241 (691)
T ss_pred ecccCceEEEEEcCC---CceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh----
Confidence 999999999999988 5554421110 0001101145888888754 35789999999999999876554443
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-cccc-----cccccceeeecCCCC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLA-----EPCAINSFDIDPQNP 325 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~-----~~~~i~s~~~~~~~~ 325 (343)
..|.+.|.+|+..+++. .+++++.|+.|..+....... +... +...|.++++.+
T Consensus 242 -------~~h~adVl~Lav~~~~d----------~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--- 301 (691)
T KOG2048|consen 242 -------SCHDADVLALAVADNED----------RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--- 301 (691)
T ss_pred -------hhhhcceeEEEEcCCCC----------eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---
Confidence 46899999999998877 799999999998876543321 2222 245799999998
Q ss_pred CeeEEccCCceEEE
Q 019258 326 SDVICSLEWESIAI 339 (343)
Q Consensus 326 ~~l~~~~~~~~i~~ 339 (343)
..+++|+.|..+++
T Consensus 302 ~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 302 NALISGGRDFTLAI 315 (691)
T ss_pred ceEEecceeeEEEE
Confidence 69999999977765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=165.09 Aligned_cols=241 Identities=20% Similarity=0.209 Sum_probs=178.1
Q ss_pred CCCCeeEEEcc--CC-CeEEEEcCCCcEEEEEccCcee--eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEE
Q 019258 70 PPTRISSLSTS--HQ-SLVAASTLSGSLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 70 ~~~~v~~v~~~--~~-~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd 141 (343)
+.++|++++|+ .+ .++++|...|.|-+|++..++. -.+.. ...|.++|.++.|+ ...+++.|.||++++-|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE-eccCCccccceEecCCChhheeeeccCceeeeee
Confidence 46789999999 44 7888999999999999952211 11122 23699999999998 67899999999999999
Q ss_pred CCCCceEEEEEcC-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 142 VIGGGEFKRVYDG-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+++.. ...++.. .....+..+.|+. ...++.+..=|...+||+|. .+.....+..|. ..|++++++|.
T Consensus 264 ~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~--~~s~~~~~~lh~-------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 264 FEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT--DGSEYENLRLHK-------KKITSVALNPV 333 (498)
T ss_pred ecchh-hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec--CCccchhhhhhh-------cccceeecCCC
Confidence 98852 3333322 1223577788877 66788888877999999999 455555666555 56999999999
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeee--eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIV--LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
.++++++++-|++++|||+|+...... +. ...|.-.|.+..|+|.+. .|++.+.|.+|+
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls---------t~~HrrsV~sAyFSPs~g----------tl~TT~~D~~IR 394 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLS---------TLPHRRSVNSAYFSPSGG----------TLLTTCQDNEIR 394 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCccee---------cccccceeeeeEEcCCCC----------ceEeeccCCceE
Confidence 999999999999999999987543221 21 146999999999999988 699999999999
Q ss_pred EEecC-----CCcccccccc------cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 298 VVEQG-----EEPFELLAEP------CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 298 ~~~~~-----~~~~~~~~~~------~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+.. .++.....+. -..-.-.|+| +..+++.|.--..|.|++
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCC-CccEEEEeccCcceeEEc
Confidence 99973 2333223221 1233346777 347777777667777765
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=168.54 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=197.8
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEccCCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d 91 (343)
.|+-|..--..|+|-| ++++++|++.|+. +++|+...+ +.++.+. .+...|.+++.. ..+|++|+.+
T Consensus 8 lRyaht~G~t~i~~d~----~gefi~tcgsdg~-----ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~-s~~f~~~s~~ 75 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDP----DGEFICTCGSDGD-----IRKWKTNSDEEEPETID--ISGELVSSIACY-SNHFLTGSEQ 75 (933)
T ss_pred chhhccCceEEEEEcC----CCCEEEEecCCCc-----eEEeecCCcccCCchhh--ccCceeEEEeec-ccceEEeecc
Confidence 3456666688999999 8999999999976 569988543 3332222 155677777765 5699999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
++|.+|.+...+.-.+... -+-++++++++ |++++.||.|-.|++-++.... ....+.+|+. +|.++.|+| .
T Consensus 76 ~tv~~y~fps~~~~~iL~R---ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a-pVl~l~~~p~~ 150 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILAR---FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA-PVLQLSYDPKG 150 (933)
T ss_pred ceEEEeeCCCCCccceeee---eeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCC-ceeeeeEcCCC
Confidence 9999999985543322221 23477888888 8899999999999999998874 4555677877 899999999 7
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc-ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA-SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+.|++.+-||.|++||+.. +.....+.+.....+.. ...+..++|+|++..+ +..+.|+.|++|+....+....+
T Consensus 151 ~fLAvss~dG~v~iw~~~~---~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQD---GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CEEEEEecCceEEEEEccc---chhhhhcccCCccccccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeheee
Confidence 7788888899999999987 55555555443222222 3567889999997665 56678899999998776655555
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQ 323 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~ 323 (343)
.. ..+...+..++|+|.+. +|++++.||.|.+||... .+.......|-.++|.|+
T Consensus 227 r~---------~~~ss~~~~~~wsPnG~----------YiAAs~~~g~I~vWnv~t--~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 227 RD---------KLSSSKFSDLQWSPNGK----------YIAASTLDGQILVWNVDT--HERHEFKRAVCCEAWKPN 281 (933)
T ss_pred cc---------cccccceEEEEEcCCCc----------EEeeeccCCcEEEEeccc--chhccccceeEEEecCCC
Confidence 42 23445599999999987 899999999999999864 222112345677777763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=180.77 Aligned_cols=220 Identities=20% Similarity=0.244 Sum_probs=178.9
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
|.-.+.+++-.. ..+.+++|++|..++ +|...... ++.. ..|.++|-++.|. .+.+|++|+.+|+|
T Consensus 27 hsaav~~lk~~~----s~r~~~~Gg~~~k~~-----L~~i~kp~---~i~S~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 27 HSAAVGCLKIRK----SSRSLVTGGEDEKVN-----LWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhceeeeec----cceeeccCCCceeec-----cccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCce
Confidence 455677777644 678999999996655 88885532 2333 6799999999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||+.....+ +...+|...+.+++|+ +.++++++.|+-+++||++.. -+...+..|.. .+..+.|.| +..+
T Consensus 95 K~wDleeAk~v---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~-vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 95 KVWDLEEAKIV---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTR-VVDVLRLSPDGRWV 169 (825)
T ss_pred eeeehhhhhhh---hhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcc-eeEEEeecCCCcee
Confidence 99999844333 3445799999999999 889999999999999999865 26667777655 789999999 7799
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+.++.|.+++|||++. ++.+..|+.|+ +.+.++.|||.. .++++|+.|++|++||+++.+.....
T Consensus 170 ~~g~ed~tvki~d~~a---gk~~~ef~~~e-------~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~---- 234 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTA---GKLSKEFKSHE-------GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSG---- 234 (825)
T ss_pred eccCCcceeeeecccc---ccccccccccc-------ccccccccCchh-hhhccCCCCceeeeeccceeEEeecc----
Confidence 9999999999999999 88888898887 789999999975 68899999999999999874332221
Q ss_pred CCcccccCCccccEEEEEEeecCC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
......|.++.|+|++.
T Consensus 235 -------~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 235 -------KPETDGVRSLAFNPDGK 251 (825)
T ss_pred -------CCccCCceeeeecCCce
Confidence 33467899999999976
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=171.64 Aligned_cols=242 Identities=18% Similarity=0.133 Sum_probs=188.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc----CCCeEEEEcCCCcEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS----HQSLVAASTLSGSLH 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s~dg~v~ 95 (343)
-|.+|+-+| ++.+||+|-..++ |+++++.+-.. ....-.|+.+|.|+.|+ ...+|++++.|..|+
T Consensus 461 G~R~~~vSp----~gqhLAsGDr~Gn-----lrVy~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 461 GFRALAVSP----DGQHLASGDRGGN-----LRVYDLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred ceEEEEECC----CcceecccCccCc-----eEEEEehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 488999999 8999998855443 78999954222 23345689999999999 457899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--C--CEEEEEeCCCcEEEEECCC----CceEEEEEcCCCccceEEEEeCC
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--G--SECVSVGEDGRVNLVSVIG----GGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~--~~~~s~s~dg~v~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
|||+..+ ..+......|...|+++.|- | ...++||.|..+ +++..+ +....+....-....++.++..|
T Consensus 530 V~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 530 VYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred EEecccc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCC
Confidence 9999743 23333445799999999997 3 578999999855 455543 21111111111122699999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..++++++.|+.|+|||+.. ++..+.|++..++. +..-.+..+|.+- ++++.+.|.++.++|+-+++....
T Consensus 607 ~~k~v~t~cQDrnirif~i~s---gKq~k~FKgs~~~e----G~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIES---GKQVKSFKGSRDHE----GDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred CcceEEEEecccceEEEeccc---cceeeeecccccCC----CceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhh
Confidence 88999999999999999999 89899999887655 6688899999985 468899999999999998776555
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
. .+|...|+.|.|.+|-. +|++.+.||+|.+|+....
T Consensus 679 m-----------~GHsE~VTG~kF~nDCk----------HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 M-----------TGHSEAVTGVKFLNDCK----------HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred h-----------cCcchheeeeeecccch----------hheeecCCceEEEEECchh
Confidence 4 46999999999999987 8999999999999997643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=167.96 Aligned_cols=256 Identities=15% Similarity=0.181 Sum_probs=181.4
Q ss_pred cccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 12 VHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 12 ~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
+..+ -|-..|..+.|.| ....||+++.|.+ ++.||+......-.-..++|.+.|-+++|. +...|++|
T Consensus 93 lk~~~aH~nAifDl~wap----ge~~lVsasGDsT-----~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP----GESLLVSASGDST-----IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred hcccccccceeEeeccCC----CceeEEEccCCce-----eeeeeeccceeecceeecccccccchhhhccCCCcceeec
Confidence 4444 3777899999999 6778999999975 669999654322222357899999999999 88899999
Q ss_pred cCCCcEEEEEccCce-----e---------------eee----eccCCccccC----eEEEEec-CCEEEEEeC-CCcEE
Q 019258 89 TLSGSLHVLSSAMQV-----L---------------LSV----DENSGFHVGP----ISGVDLT-GSECVSVGE-DGRVN 138 (343)
Q Consensus 89 s~dg~v~v~~~~~~~-----~---------------~~~----~~~~~~h~~~----v~~~~~~-~~~~~s~s~-dg~v~ 138 (343)
+.||.|.|||++... + ... .+...+|... |+.+.|- ...|+++|. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999986211 0 000 0001123233 4445554 788999887 99999
Q ss_pred EEECCCCceEEEE-------EcCC--CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCC-CCeeEEecccCCCCCc
Q 019258 139 LVSVIGGGEFKRV-------YDGN--GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKA 207 (343)
Q Consensus 139 ~wd~~~~~~~~~~-------~~~~--~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~ 207 (343)
+||++......+. +..+ ....+.++.... +.++++.+.|+.|.+|+++. .. .++..+.++..
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s--~s~sP~~~~sg~~~----- 316 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS--LSISPVAEFSGKLN----- 316 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc--cCcCchhhccCccc-----
Confidence 9999874322111 1111 122467777666 67777777799999999987 22 23334443321
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
...-..-..+|++.. +++|+.|+..++|.+.+.+.+...+ .+|.-.|..|+|.|.... -+
T Consensus 317 ~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~~l----------~Ght~eVt~V~w~pS~~t---------~v 376 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPALL----------LGHTREVTTVRWLPSATT---------PV 376 (720)
T ss_pred ceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChhhh----------hCcceEEEEEeeccccCC---------Cc
Confidence 011222345788765 5799999999999999988888877 789999999999998776 89
Q ss_pred EEEecCCeEEEEecCC
Q 019258 288 MFCSEDGILAVVEQGE 303 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~ 303 (343)
++||+|-++.+|+...
T Consensus 377 ~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeeccCcceEEEeccC
Confidence 9999999999998643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=166.48 Aligned_cols=278 Identities=15% Similarity=0.119 Sum_probs=203.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.|...|.+|.-.| .+.+|++||.|++ +++|.+.+ ..|+..++..+.|.|++|+ +-..|+++.. .
T Consensus 398 GHtg~Vr~iSvdp----~G~wlasGsdDGt-----vriWEi~T---gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~ 464 (733)
T KOG0650|consen 398 GHTGLVRSISVDP----SGEWLASGSDDGT-----VRIWEIAT---GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-E 464 (733)
T ss_pred ccCCeEEEEEecC----CcceeeecCCCCc-----EEEEEeec---ceEEEEEeecceeEEEEecCCCCceeEEEEec-C
Confidence 3677899999999 8999999999976 77999954 6788888899999999999 3334444443 3
Q ss_pred cEEEEEccCc---------eee-----------eeeccC--------------CccccCeEEEEec--CCEEEEEeCC--
Q 019258 93 SLHVLSSAMQ---------VLL-----------SVDENS--------------GFHVGPISGVDLT--GSECVSVGED-- 134 (343)
Q Consensus 93 ~v~v~~~~~~---------~~~-----------~~~~~~--------------~~h~~~v~~~~~~--~~~~~s~s~d-- 134 (343)
.+.|.+..-+ +.+ .+..|. -.|..+|..+.|+ |.+|++...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3555443100 000 000111 1266789999999 9999988764
Q ss_pred -CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE
Q 019258 135 -GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH 212 (343)
Q Consensus 135 -g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (343)
..|.+.++...+....+...++ .+.++.|+| ..+|+.++ ...|++||+.. ...+..+.... .+|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvKkL~tg~-------kwiS 611 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVKKLLTGS-------KWIS 611 (733)
T ss_pred cceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHHHHhcCC-------eeee
Confidence 4688899876532222212233 599999999 55566554 67899999987 56665554333 6799
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 213 SVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.++.||.|.+++ .|+.|+.+..+|+.-..+|...+ ..|+..+.+|+||+.-+ ++++||.
T Consensus 612 ~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~l----------r~H~~avr~Va~H~ryP----------Lfas~sd 670 (733)
T KOG0650|consen 612 SMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTL----------RLHEKAVRSVAFHKRYP----------LFASGSD 670 (733)
T ss_pred eeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHh----------hhhhhhhhhhhhccccc----------eeeeecC
Confidence 999999998875 68999999999998888888877 78999999999999888 8999999
Q ss_pred CCeEEEEecC---C---C----cccccccc-----cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 293 DGILAVVEQG---E---E----PFELLAEP-----CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 293 dg~i~~~~~~---~---~----~~~~~~~~-----~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||++.++... . . +...+..+ ..|....|||.. .+|++++.++.|++|+
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence 9999886531 1 1 11222222 347777899954 8999999999999985
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=155.49 Aligned_cols=235 Identities=19% Similarity=0.221 Sum_probs=158.8
Q ss_pred CeeEEEccCCCeEEEEcCCCcEEEEEccCceee------------eeeccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 73 RISSLSTSHQSLVAASTLSGSLHVLSSAMQVLL------------SVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 73 ~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
.+..+.++.+..|+++..++.+..+........ .... .....++...+...+..++++..||.+.+.
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeee-ccCCCCCcccccccCCceEecCCCceEEEE
Confidence 377777777788888888877766655322111 1111 111123445555558889999999999999
Q ss_pred ECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+.+.-....+.+..... .--+.++.....++.++.- +..+.|+++. +.++....... ..|+++
T Consensus 117 s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p------~~t~~~~~~~~----~~v~~l 185 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP------IKTLIPSKKAL----DAVTAL 185 (319)
T ss_pred echHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccc------ccccccccccc----ccchhh
Confidence 98763222222211111 1222222232334444443 4455566544 33332222111 449999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
+-||..++++++|++||.+-+||+|+...|..++ .+|+.+|+.|.|||.++. .|++||+||
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l----------~ahk~~i~eV~FHpk~p~---------~Lft~sedG 246 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL----------KAHKAEIWEVHFHPKNPE---------HLFTCSEDG 246 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHH----------HHhhhhhhheeccCCCch---------heeEecCCC
Confidence 9999999999999999999999999998898888 899999999999999998 999999999
Q ss_pred eEEEEecCCCc-----------ccc--------------ccc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEP-----------FEL--------------LAE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~-----------~~~--------------~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+|.|+..... .|+ +++ ...||+||+.+ ..|+||+|.+.||++.
T Consensus 247 slw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g---~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 247 SLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLG---PCLVCGTDAEAIYLTR 316 (319)
T ss_pred cEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccC---ceEEeccccceEEEec
Confidence 99999975211 111 111 25799999997 8999999999999975
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=156.22 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=200.7
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc-CCC-eEEEEcCCCcE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS-HQS-LVAASTLSGSL 94 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~-~~~-~l~~~s~dg~v 94 (343)
...|++|.|+| ....+++++.|+. ++|+.+..+... .+.++.. ..+|.+..|. ++. .+++++.-..+
T Consensus 213 ~~~I~sv~FHp----~~plllvaG~d~~-----lrifqvDGk~N~-~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHP----TAPLLLVAGLDGT-----LRIFQVDGKVNP-KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecC----CCceEEEecCCCc-----EEEEEecCccCh-hheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 35799999999 7788999999975 779999665433 2333333 4689999999 555 89999999999
Q ss_pred EEEEccCceeeeeeccCCccc-cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHV-GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+.||+...+...+.... ++. ..+..+.++ ++.++..|..|.|.+.-..++. ....+.-.. .+..++|+. +..
T Consensus 283 ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~KieG--~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIEG--VVSDFTFSSDSKE 358 (514)
T ss_pred EEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheeeecc--EEeeEEEecCCcE
Confidence 99999754433332222 232 345566666 8899999999999999888874 444443333 489999988 888
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC-----Cceee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW-----QQQSI 245 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~-----~~~~~ 245 (343)
+++.+.+|.|.+||+++ ...+..+....+ -.-++++.++++. +||+|++.|.|.|||..+ ..+|+
T Consensus 359 l~~~~~~GeV~v~nl~~---~~~~~rf~D~G~------v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQ---NSCLHRFVDDGS------VHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred EEEEcCCceEEEEecCC---cceEEEEeecCc------cceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCch
Confidence 99999999999999999 666666653321 2245667678776 679999999999999643 22333
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe--cCCeEEEEecCCC-ccccccc----cccccee
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS--EDGILAVVEQGEE-PFELLAE----PCAINSF 318 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s--~dg~i~~~~~~~~-~~~~~~~----~~~i~s~ 318 (343)
... ..-...|..|+|+|+.+ .|+-|| .+..+++..-... .+.-.+. -.-+.++
T Consensus 429 k~~----------dNLtt~Itsl~Fn~d~q----------iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 429 KTV----------DNLTTAITSLQFNHDAQ----------ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred hhh----------hhhheeeeeeeeCcchh----------hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 332 23467899999999987 455554 5567877654321 1111111 2568999
Q ss_pred eecCCCCCeeEEccCCceEEEEe
Q 019258 319 DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+| ++.+++.|.+++++.+|+
T Consensus 489 aFSP-~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 489 AFSP-NSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred EecC-CCceEEeecCCCceeeEe
Confidence 9999 679999999999999997
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=148.66 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=179.5
Q ss_pred eeeCCCC-CCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCC-------CcEEEEEccCcee------ee-eeccCCccc
Q 019258 53 THSISLP-ASLTPHSQWTPPTRISSLSTS--HQSLVAASTLS-------GSLHVLSSAMQVL------LS-VDENSGFHV 115 (343)
Q Consensus 53 ~w~~~~~-~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~d-------g~v~v~~~~~~~~------~~-~~~~~~~h~ 115 (343)
+..+..+ ....+...+-+.++|..++-+ +...|++...+ -.+.||.+.+.-. +. +......+.
T Consensus 44 ll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav 123 (370)
T KOG1007|consen 44 LLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV 123 (370)
T ss_pred EEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh
Confidence 5555433 223334445667999999988 66667666541 2467999873211 11 112223466
Q ss_pred cCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCC---ccceEEEEeCC--CCEEEEEeCCCcEEEEEccc
Q 019258 116 GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNG---LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 116 ~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~---~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~ 187 (343)
+.|.|+.|. +..+++.. |..|.+|++...+. +..+..... ....++-+|+| ....+....|+++..||+|+
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 799999998 66777665 78899999987644 222221111 11477888998 44455566799999999998
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.++...+...++ ..+..++|+|+.++++++|++||.|++||.|+...|+..+ .+|...||+
T Consensus 203 ---~~~~~sI~dAHg------q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----------~~HsHWvW~ 263 (370)
T KOG1007|consen 203 ---MKKNNSIEDAHG------QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----------PGHSHWVWA 263 (370)
T ss_pred ---hhhhcchhhhhc------ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----------CCCceEEEE
Confidence 666666654443 4599999999999999999999999999999999999888 889999999
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc------------------------------cccccc-ccccc
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------------------------------FELLAE-PCAIN 316 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------------------------------~~~~~~-~~~i~ 316 (343)
|.|+|.... .++++|.|..+.+|-...-. .+.+.+ ...|+
T Consensus 264 VRfn~~hdq---------LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY 334 (370)
T KOG1007|consen 264 VRFNPEHDQ---------LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY 334 (370)
T ss_pred EEecCccce---------EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence 999998776 88999999999887532100 011111 25799
Q ss_pred eeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 317 SFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 317 s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
+++|+.-+ .+++++ +=||++.|-+
T Consensus 335 ~~aWSsad-PWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 335 ALAWSSAD-PWIFASLSYDGRVIISS 359 (370)
T ss_pred EEeeccCC-CeeEEEeccCceEEeec
Confidence 99999755 555554 4466666544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=168.65 Aligned_cols=266 Identities=17% Similarity=0.144 Sum_probs=190.9
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee--e-eeeccCCccccCeEEEEec-
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL--L-SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~--~-~~~~~~~~h~~~v~~~~~~- 124 (343)
+-+|++..+ ..+...+..+.+|.+++|+ ++.+++.|+.+|.|.+||+..... . .+......|..+|+.+.|.
T Consensus 224 ~~vW~~~~p--~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 224 LLVWSLKNP--NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred EEEEecCCC--CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 679999664 4456667778899999999 889999999999999999984433 2 2222344689999999997
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCceEEEEE----------cCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccC
Q 019258 125 ---GSECVSVGEDGRVNLVSVIGGGEFKRVY----------DGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 125 ---~~~~~s~s~dg~v~~wd~~~~~~~~~~~----------~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
+..|++++.||.|..|+++.-..+.... .......+++++|.+ .+.|+.|+.+|.|.--.-.. -
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g-~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG-Y 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC-C
Confidence 5569999999999999987632211110 112234689999998 78899999999887632211 0
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
...+...++.+.. -..+.++|+++.++|....+|++++ |.+|+||.......|.... ..+...|.+++
T Consensus 381 ~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~----------~~~~~~v~~va 448 (555)
T KOG1587|consen 381 TPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL----------DSSPDYVTDVA 448 (555)
T ss_pred ccccccccccccc-ccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh----------hhccceeeeeE
Confidence 0111111222211 1123388999999999988888877 9999999987446666655 45667799999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCC---cc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE---PF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~---~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|+|..+. .++++..||.|.+||.... +. .........+.+-+++ +|..|++|.+.|.+++++
T Consensus 449 WSptrpa---------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 449 WSPTRPA---------VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCcCce---------EEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 9999997 8888899999999996432 21 1111234455566665 679999999999999986
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-22 Score=179.09 Aligned_cols=236 Identities=15% Similarity=0.205 Sum_probs=187.5
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCE
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSE 127 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~ 127 (343)
|++|+.. ....|...|.++..- ..+.+++|+.|-.+-+|.+.....+.. ..+|..+|.++.++ ...
T Consensus 16 Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 16 LRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERL 84 (825)
T ss_pred cccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---eeccCCcceeeecCcchhh
Confidence 6677772 244677778887765 668899999999999998875443322 34799999999999 667
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 128 CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 128 ~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
+++|+.+|+|++||++..+.++ .+-+|.. .+..+.|+| ..+++.++.|..+++||.|. ..+...+.+|.
T Consensus 85 laagsasgtiK~wDleeAk~vr-tLtgh~~-~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~----- 154 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVR-TLTGHLL-NITSVDFHPYGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHT----- 154 (825)
T ss_pred hcccccCCceeeeehhhhhhhh-hhhcccc-CcceeeeccceEEeccccccccceehhhhc---cCceeeecCCc-----
Confidence 7889999999999999986444 4455655 799999999 77888899999999999997 67888888765
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..+..+.|.|+|++ ++.|++|..+++||++.+.....+ ..|++.+..+.|||..- .
T Consensus 155 --~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~~~ef-----------~~~e~~v~sle~hp~e~----------L 210 (825)
T KOG0267|consen 155 --RVVDVLRLSPDGRW-VASGGEDNTVKIWDLTAGKLSKEF-----------KSHEGKVQSLEFHPLEV----------L 210 (825)
T ss_pred --ceeEEEeecCCCce-eeccCCcceeeeeccccccccccc-----------ccccccccccccCchhh----------h
Confidence 66999999999875 589999999999999886544443 56999999999999876 7
Q ss_pred eEEEecCCeEEEEecC-CCccc-ccccccccceeeecCCCCCeeEEcc
Q 019258 287 AMFCSEDGILAVVEQG-EEPFE-LLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~-~~~~~-~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
+.+||.|+++++|+.. .+.+. .-.+...|.+..+++ ++..+.||.
T Consensus 211 la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~ 257 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGE 257 (825)
T ss_pred hccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCc
Confidence 9999999999999975 33222 222356799999998 668888775
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-20 Score=158.53 Aligned_cols=229 Identities=15% Similarity=0.076 Sum_probs=167.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
--+.+|++++-+| .+.+++.|.--+. |.+|.++...-... ...|-..|+++.|+ ++.+|++|+.||.|
T Consensus 79 v~Pg~v~al~s~n----~G~~l~ag~i~g~-----lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 79 VLPGPVHALASSN----LGYFLLAGTISGN-----LYLWELSSGILLNV--LSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred ccccceeeeecCC----CceEEEeecccCc-----EEEEEeccccHHHH--HHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 3445688888888 7888877644433 77999976432221 24678899999999 99999999999999
Q ss_pred EEEEccC------ceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 95 HVLSSAM------QVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 95 ~v~~~~~------~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
.+|.+.. ............|+-+|+++... ...++|+|.|.++++||+..+. +...+.... .+.++.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp~--si~av~ 224 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFPS--SIKAVA 224 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEecCC--cceeEE
Confidence 9998851 11222233334699999999987 4689999999999999999995 444444444 599999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCC-------------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGS-------------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..| ...+..|+.+|.|.+.++....+ +..+..+.+|.+ ..+|+|++++-++. ++++|++|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-----~~~ITcLais~Dgt-lLlSGd~d 298 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-----ESAITCLAISTDGT-LLLSGDED 298 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC-----CcceeEEEEecCcc-EEEeeCCC
Confidence 999 88899999999999988765110 011222333331 14899999999875 77899999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|+|++||....+....+. ...++|+.+++.|-.+
T Consensus 299 g~VcvWdi~S~Q~iRtl~-----------~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 299 GKVCVWDIYSKQCIRTLQ-----------TSKGPVTNLQINPLER 332 (476)
T ss_pred CCEEEEecchHHHHHHHh-----------hhccccceeEeecccc
Confidence 999999998755444433 1467889999876544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=163.05 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=190.7
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCc
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
.+.+++.+ ++.+|++|..-|.++||++.+.+.+.. ..+|...|.|+.++ .+.|++++.|..|.++|+...-
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 48899999 999999999999999999985444433 33799999999998 5678999999999999998764
Q ss_pred eEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
.+...++.|.+ .|++++|.. +..+++++.|+.|.+ +..+ .......|..+...- ...-+..++..|... +
T Consensus 538 ~l~qtld~HSs-sITsvKFa~~gln~~MiscGADksimF-r~~q--k~~~g~~f~r~t~t~--~ktTlYDm~Vdp~~k-~ 610 (1080)
T KOG1408|consen 538 DLVQTLDGHSS-SITSVKFACNGLNRKMISCGADKSIMF-RVNQ--KASSGRLFPRHTQTL--SKTTLYDMAVDPTSK-L 610 (1080)
T ss_pred chhhhhccccc-ceeEEEEeecCCceEEEeccCchhhhe-ehhc--cccCceecccccccc--ccceEEEeeeCCCcc-e
Confidence 56677777776 899999976 468999999998874 3333 122222333222111 115689999999865 5
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec--
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ-- 301 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~-- 301 (343)
++++++|+.|+|||+.++.+...+.+. +.|++....|...|.+. ++++...|.+|.++|.
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs--------~~~eG~lIKv~lDPSgi----------Y~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGS--------RDHEGDLIKVILDPSGI----------YLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EEEEecccceEEEeccccceeeeeccc--------ccCCCceEEEEECCCcc----------EEEEeecCCceEEEEecc
Confidence 689999999999999987776666532 46888999999999987 8999999999999886
Q ss_pred CCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 302 GEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 302 ~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++-......+...|..+-|.++. +.||+.+.|+-|.||+-|
T Consensus 673 gEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECc
Confidence 44456666778899999999865 999999999999999855
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=162.52 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=160.9
Q ss_pred eEEEcc----CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 75 SSLSTS----HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 75 ~~v~~~----~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
.+..|+ ....|+.+..||.|.++|.... ++.++..+ ..|.+.|..+.|- ...|++++.|.+++.||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 456776 4567899999999999998722 22223333 3799999999998 66789999999999999998
Q ss_pred CceEEEE--EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCC---------------C--CCeeEEecccCC
Q 019258 145 GGEFKRV--YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGS---------------G--GPVLQFKGNFGS 203 (343)
Q Consensus 145 ~~~~~~~--~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~---------------~--~~~~~~~~~~~~ 203 (343)
.. +... +.+|.. .+.+++|.+ ...|++|+.||.|.|||+|.... + .+....+.....
T Consensus 132 s~-l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 132 SR-LVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ce-eecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 74 4333 556666 899999999 78899999999999999986110 0 010000000000
Q ss_pred CCCcccC----eEEEEEcCCCCeEEEEEec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 204 QGKASGM----IHSVDIHPSRKHTCLAGGS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 204 ~~~~~~~----i~~v~~~p~~~~~~~sg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
...+... |+.+.| .+.. .+|+++. |+.|++||+|+...+....-........+..-.-.+.++..+..+..
T Consensus 210 ~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~-- 285 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY-- 285 (720)
T ss_pred cccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe--
Confidence 0011122 444444 4444 4566666 99999999998755443322111111111111234666767666674
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCcccc--ccccccccee----eecCCCCCeeEEccCCceEEEEe
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEPFEL--LAEPCAINSF----DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~--~~~~~~i~s~----~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++|. |+.|+.|+.......- ...++.+.+| ..+| ++.+|++|+.++..|+|.
T Consensus 286 -------L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 286 -------LFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred -------EEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeee
Confidence 556666 9999999975432221 1223444444 3356 469999999999999986
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-19 Score=143.57 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=189.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC---------CCCCccC----CCCCCeeEEEcc--
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS---------LTPHSQW----TPPTRISSLSTS-- 80 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---------~~~~~~~----~~~~~v~~v~~~-- 80 (343)
||...|+++..-| ..++++++|+.|+. +.+||++.... .+|.-.. .|.-.|.++.|.
T Consensus 41 ~HgGsvNsL~id~---tegrymlSGgadgs-----i~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 41 PHGGSVNSLQIDL---TEGRYMLSGGADGS-----IAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred cCCCccceeeecc---ccceEEeecCCCcc-----EEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 4666777777777 57899999999975 66999954321 1221122 244569999988
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
+...+.+++.|.+++|||.++.++...... .+.|.+-+++ -..+++|..|-.|++.|+.++. ....+.+|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGH 187 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGH 187 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccc
Confidence 889999999999999999997665544432 2455555555 4567778888899999999994 67777888
Q ss_pred CccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC-------CCCCcccCeEEEEEcCCCCeEEEE
Q 019258 156 GLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG-------SQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 156 ~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
.. .|.++.|+| .-.|++|+.||.|++||+|. ...+...+..|.. ....+.+.++.++|..++.++ ++
T Consensus 188 r~-~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr--asgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l-~~ 263 (397)
T KOG4283|consen 188 RD-GVLAVEWSPSSEWVLATGSADGAIRLWDIRR--ASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL-AS 263 (397)
T ss_pred cC-ceEEEEeccCceeEEEecCCCceEEEEEeec--ccceeEEeecccCccCccccccccccceeeeeeecccchhh-hh
Confidence 77 899999999 55688899999999999998 2234433333321 011234779999999998765 67
Q ss_pred EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe---ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD---CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.|..+++|+..+++......+. ..|+. -...+++ -+.. .++.--.|+.|.+++..+
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~--------~~~n~-~~~~~~~~~~~~s~----------vfv~~p~~~~lall~~~s 324 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGP--------IIHNQ-TTSFAVHIQSMDSD----------VFVLFPNDGSLALLNLLE 324 (397)
T ss_pred ccCccceEEeecccCccccccccc--------ccccc-cccceEEEeecccc----------eEEEEecCCeEEEEEccC
Confidence 788889999999876543332210 01111 1111111 1111 333444556666655433
Q ss_pred Cc-cccc-ccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 304 EP-FELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 304 ~~-~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
.. ..++ .+-..++...+.|+. +.+.+|.-|+.|+.|
T Consensus 325 gs~ir~l~~h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 325 GSFVRRLSTHLKRINCAAYRPDF-EQCFTGDMNGNIYMW 362 (397)
T ss_pred ceEEEeeecccceeeEEeecCch-hhhhccccCCccccc
Confidence 22 1222 223456666677743 777788888888776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-17 Score=146.47 Aligned_cols=266 Identities=10% Similarity=0.019 Sum_probs=173.9
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeeccCC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDENSG 112 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~ 112 (343)
..+++++.|+. +.+|++.+.. +...+.....+.++.|+ ++..+ ++++.++.|++|+....+......
T Consensus 2 ~~~~s~~~d~~-----v~~~d~~t~~---~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--- 70 (300)
T TIGR03866 2 KAYVSNEKDNT-----ISVIDTATLE---VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--- 70 (300)
T ss_pred cEEEEecCCCE-----EEEEECCCCc---eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---
Confidence 56888888864 7799985432 33444444557789998 66655 567789999999998654433221
Q ss_pred ccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC-cEEEEEccc
Q 019258 113 FHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY-GLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~-~i~iwd~~~ 187 (343)
.+. .+..+.++ ++.++ +++.|+.+++||+.+.+ ....+.... .+.+++|+| +..+++++.++ .+.+||.+.
T Consensus 71 ~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 71 SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 122 24566776 66554 55678999999998874 444443222 367899999 77777777664 567789876
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc--ccE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE--SEV 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~--~~v 265 (343)
.+........ ....+++|+|++..+++++..++.|++||+++.+....+.. ... ..+. ...
T Consensus 147 ---~~~~~~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~-----~~~~~~~~~ 209 (300)
T TIGR03866 147 ---YEIVDNVLVD--------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF-EIP-----GVHPEAVQP 209 (300)
T ss_pred ---CeEEEEEEcC--------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee-ccc-----ccccccCCc
Confidence 4444333221 33577999999987767767799999999987644332210 000 0111 123
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
..+.|+|++.. .+++.+.+++|.+|+..... .........+.+++++| +|++|+++ ..++.|.+|+.
T Consensus 210 ~~i~~s~dg~~---------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 210 VGIKLTKDGKT---------AFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cceEECCCCCE---------EEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 46889998874 34555667789999875332 22223345788999999 56888876 45789999863
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-19 Score=161.21 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=207.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
|...|....+.| ..+.++|++.|+. .++|+.|..+.. +..+.. -+|..+..++.|. .+..+++++.|++
T Consensus 287 h~~sv~~~~fl~----~epVl~ta~~DnS---lk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 287 HYGSVTGATFLP----GEPVLVTAGADNS---LKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred ccCCcccceecC----CCceEeeccCCCc---eeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 455677777777 7889999999953 345666643332 333333 5788889999998 7778888889998
Q ss_pred EEEEEccC-------ce---------------------ee------------------------eeecc------CCc--
Q 019258 94 LHVLSSAM-------QV---------------------LL------------------------SVDEN------SGF-- 113 (343)
Q Consensus 94 v~v~~~~~-------~~---------------------~~------------------------~~~~~------~~~-- 113 (343)
.+.|.+.. .+ ++ ....| ...
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 88887620 00 00 00000 000
Q ss_pred --cc------cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE---cCCCccceEEEEeCC-CCEEEEEeCCCc
Q 019258 114 --HV------GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY---DGNGLVGFNCVKWAS-PTEFVTGGFGYG 179 (343)
Q Consensus 114 --h~------~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~l~t~~~d~~ 179 (343)
+. ..+++++.+ |+..+.|...|.|-++++.++. .+..+ ..|.. .|++++... +..+++++.+|.
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~~~~ah~~-~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFGDSPAHKG-EVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-eecccccCccccC-ceeEEEecCCCceEEEccCcce
Confidence 11 345666665 8888999999999999999984 55555 24555 899999988 889999999999
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccC
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHS 259 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 259 (343)
+++||+.. ...+.++... ..+.++..|... .+++.+.+|-.|.++|..+... .... .
T Consensus 517 lkfw~f~~---k~l~~~l~l~--------~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv-vR~f----------~ 573 (910)
T KOG1539|consen 517 LKFWDFKK---KVLKKSLRLG--------SSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV-VREF----------W 573 (910)
T ss_pred EEEEecCC---cceeeeeccC--------CCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh-hHHh----------h
Confidence 99999987 4444444432 457788888764 5778899999999999987433 3333 5
Q ss_pred CccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCC-ceE
Q 019258 260 LSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEW-ESI 337 (343)
Q Consensus 260 ~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~-~~i 337 (343)
+|.+.|+++.|+|++. +|++++.|++|++||.... ....+.-+.+..++.++| +|++|+..-.+ ..|
T Consensus 574 gh~nritd~~FS~Dgr----------WlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGR----------WLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSP-NGDFLATVHVDQNGI 642 (910)
T ss_pred ccccceeeeEeCCCCc----------EEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECC-CCCEEEEEEecCceE
Confidence 7999999999999998 8999999999999998533 344444578899999999 78999999877 699
Q ss_pred EEEeC
Q 019258 338 AIVSR 342 (343)
Q Consensus 338 ~~~~~ 342 (343)
|+|.+
T Consensus 643 ylWsN 647 (910)
T KOG1539|consen 643 YLWSN 647 (910)
T ss_pred EEEEc
Confidence 99975
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=160.08 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=187.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-eeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-VLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
..|...-+.++|. ++..|+++++||.|++|+.... +...... .+...|.+++..++.|++++.+++|.+|...++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 3566778899998 8889999999999999998744 2222221 266788999988889999999999999999886
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
. ...++..... ++++++++. +..++.|++|-.|++-++.. ......+.+|. ++|.++.|+|++ .++
T Consensus 87 ~-~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D---~s~~~~lrgh~-------apVl~l~~~p~~-~fL 153 (933)
T KOG1274|consen 87 E-EDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---SSQEKVLRGHD-------APVLQLSYDPKG-NFL 153 (933)
T ss_pred C-ccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccc---cchheeecccC-------CceeeeeEcCCC-CEE
Confidence 3 3333322233 689999988 88999999999999999887 56667778776 899999999987 467
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-- 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-- 302 (343)
|+.+-||.|++||+..+.....+-++....- -.....+..++|+|++. .++..+.|++|.+++..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g----------~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGG----------TLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCcccc---ccccceeeeeeecCCCC----------eEEeeccCCeEEEEccCCc
Confidence 8899999999999987654444332221110 11145678999999988 68999999999998763
Q ss_pred CCccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 303 EEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 303 ~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+....+..+ ...+..+.|+| +|.||++++-++.|.||+
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred eeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 333444443 34489999999 699999999999999997
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=145.30 Aligned_cols=300 Identities=13% Similarity=0.106 Sum_probs=200.4
Q ss_pred ccCCCCccccCC------------cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC
Q 019258 5 GVRTPPQVHRFP------------QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT 72 (343)
Q Consensus 5 ~~~~~~~~~~~~------------~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~ 72 (343)
|.+.||-+..++ ...-|.+|+|++. ++..++..-.|+.... |-+|+-+.+...... -..+.
T Consensus 129 g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~---~~G~~l~~vD~s~~h~--lSVWdWqk~~~~~~v--k~sne 201 (626)
T KOG2106|consen 129 GRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI---NGGSLLCAVDDSNPHM--LSVWDWQKKAKLGPV--KTSNE 201 (626)
T ss_pred CCcCCCeeeecccccceeeeeeccccccceeeeeccc---CCCceEEEecCCCccc--cchhhchhhhccCcc--eeccc
Confidence 455566555565 5677999999994 3433444444443333 346666433222111 12345
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeec-cCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
.|....|+ .+.-|+....-|++..|+.+.+....... ++...+.-|.|++|. +..+++|..+|.|.+|+..+.+-..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k 281 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK 281 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe
Confidence 68889999 44445555567899999887543332221 222234679999999 8889999999999999998874344
Q ss_pred EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC---------CCCeeEEe-cccC---------------CC
Q 019258 150 RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS---------GGPVLQFK-GNFG---------------SQ 204 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~---------~~~~~~~~-~~~~---------------~~ 204 (343)
... .|.. .|.+++......|++|+.|+.|..||-.- .. ..+++.+. +..+ +.
T Consensus 282 ~~~-aH~g-gv~~L~~lr~GtllSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 282 QVH-AHDG-GVFSLCMLRDGTLLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred Eee-ecCC-ceEEEEEecCccEeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 444 6666 89999999988899999999999998321 00 00111110 0000 00
Q ss_pred ------CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 205 ------GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 205 ------~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
..|......++.+|+.. .+++++.|+.+++|+ ..+...... -+.++-++.|+|.+
T Consensus 359 ~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~~------------~~d~~~~~~fhpsg---- 419 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLEWTKI------------IEDPAECADFHPSG---- 419 (626)
T ss_pred CceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCceeEEEE------------ecCceeEeeccCcc----
Confidence 00115677889999864 568999999999999 223333333 46788899999987
Q ss_pred CCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++.++..|...+.|.... ...+..+..+++.+.++| +|.+++-|+.|+.||+|.
T Consensus 420 -------~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 420 -------VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred -------eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEE
Confidence 3899999999888886433 334444567899999999 789999999999999986
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-17 Score=144.23 Aligned_cols=268 Identities=10% Similarity=0.058 Sum_probs=169.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
.+..+.....+..++|+| +++.+ ++++.|+ .+++|++.... ....+.....+..+.|+ +++.++++
T Consensus 23 ~~~~~~~~~~~~~l~~~~----dg~~l~~~~~~~~-----~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 23 VTRTFPVGQRPRGITLSK----DGKLLYVCASDSD-----TIQVIDLATGE---VIGTLPSGPDPELFALHPNGKILYIA 90 (300)
T ss_pred eEEEEECCCCCCceEECC----CCCEEEEEECCCC-----eEEEEECCCCc---EEEeccCCCCccEEEECCCCCEEEEE
Confidence 344444445577899999 66655 5666554 37799986532 22223333445678888 66666554
Q ss_pred -cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC-cEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 89 -TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG-RVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 89 -s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg-~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
..++.+++||+...+.+.... +...+.++.++ +..+++++.++ .+.+||..+.+...... ... ....+.
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~--~~~~~~ 163 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIP----VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ--RPRFAE 163 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEee----CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC--CccEEE
Confidence 568999999998654443322 22345778887 77888887765 46778988774333332 222 367789
Q ss_pred eCC-CCEEEEE-eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 165 WAS-PTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 165 ~~~-~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
|++ +..++++ ..++.|++||++. ++.+..+................++++|++..++++.+.++.+.+||+++.+
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 998 6666444 4599999999988 5555554322100000002245688999998777766677889999998754
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecCCCc-ccccccccccceeee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQGEEP-FELLAEPCAINSFDI 320 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~ 320 (343)
...... +...+.++.|+|++. .|+++ +.+|.|.+|+..... ...+......+++++
T Consensus 241 ~~~~~~------------~~~~~~~~~~~~~g~----------~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 241 VLDYLL------------VGQRVWQLAFTPDEK----------YLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred EEEEEE------------eCCCcceEEECCCCC----------EEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 332222 335688999999988 56665 579999999986432 232333444477766
Q ss_pred cC
Q 019258 321 DP 322 (343)
Q Consensus 321 ~~ 322 (343)
+|
T Consensus 299 ~~ 300 (300)
T TIGR03866 299 RP 300 (300)
T ss_pred CC
Confidence 53
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-18 Score=151.48 Aligned_cols=243 Identities=15% Similarity=0.140 Sum_probs=176.5
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceE
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
+.+|.+|+|+ ..+.||++-.+|.|.+|++....... ......-.+.|.+++|. +..|.|.+.+|.|.-||+.+.+ +
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~-~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE-PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-Q 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee-EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-e
Confidence 5789999999 77889999999999999998543221 11111234679999999 9999999999999999999985 4
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...++.... .|++++.+| +..++.|++||.+..++... ..+.-......++ +.+.+++|+|++.. +++|
T Consensus 103 ~~~~d~~gg-~IWsiai~p~~~~l~IgcddGvl~~~s~~p----~~I~~~r~l~rq~----sRvLslsw~~~~~~-i~~G 172 (691)
T KOG2048|consen 103 KYNIDSNGG-AIWSIAINPENTILAIGCDDGVLYDFSIGP----DKITYKRSLMRQK----SRVLSLSWNPTGTK-IAGG 172 (691)
T ss_pred eEEecCCCc-ceeEEEeCCccceEEeecCCceEEEEecCC----ceEEEEeeccccc----ceEEEEEecCCccE-EEec
Confidence 444454444 799999999 78888888999666666543 2222211111111 77999999999865 4799
Q ss_pred ecCCcEEEEEccCCceee-eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 228 GSSGTVFAWDLRWQQQSI-VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
+.||.|++||..++.... ..++.+.- .+....-||+|.|-.++ .+++|..-|+|..||......
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l----~k~~~~iVWSv~~Lrd~-----------tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRL----SKREPTIVWSVLFLRDS-----------TIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeeccccc----ccCCceEEEEEEEeecC-----------cEEEecCCceEEEEcccCcch
Confidence 999999999998865433 11111100 02245568999999765 589999999999999865432
Q ss_pred --cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 --ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 --~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
....+...|.++++++ +.+.|+|++-|+.|--+.
T Consensus 238 iqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEE
Confidence 2222357899999998 458999999888776543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=158.19 Aligned_cols=244 Identities=14% Similarity=0.116 Sum_probs=184.2
Q ss_pred CCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce---eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcE
Q 019258 64 PHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV---LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRV 137 (343)
Q Consensus 64 ~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~---~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v 137 (343)
.+.++.|..-|.++..+ ..+++++| .-|.|+|||+.... ++...... .-...|.++... +..|++|+.-.+|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEecccccee
Confidence 35566777778888888 55666665 56779999997332 11111111 022356666665 8999999999999
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+||+.....-....-......+++++.+| .+..+++..||.|.|||++. ...+.+|.+|. +-+.||++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn---q~~VrqfqGht-------DGascIdi 559 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---QTLVRQFQGHT-------DGASCIDI 559 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---ceeeecccCCC-------CCceeEEe
Confidence 999997753212111111122578889999 88899999999999999999 77788899887 66999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+++|..+ -+|+-|.+|+.||+|+++++.... ....|.++-++|++. +|+.|-+.+.+
T Consensus 560 s~dGtkl-WTGGlDntvRcWDlregrqlqqhd------------F~SQIfSLg~cP~~d----------WlavGMens~v 616 (705)
T KOG0639|consen 560 SKDGTKL-WTGGLDNTVRCWDLREGRQLQQHD------------FSSQIFSLGYCPTGD----------WLAVGMENSNV 616 (705)
T ss_pred cCCCcee-ecCCCccceeehhhhhhhhhhhhh------------hhhhheecccCCCcc----------ceeeecccCcE
Confidence 9999765 699999999999999987766543 678999999999988 89999999999
Q ss_pred EEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++...... ...+.-+..+|.|+-|.+ .|++.++.+.|..+-.|+-|
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCc
Confidence 99876533 344444567899999998 78999999988877777644
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=157.81 Aligned_cols=303 Identities=16% Similarity=0.211 Sum_probs=216.2
Q ss_pred cCCCCccccCC-cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc--C
Q 019258 6 VRTPPQVHRFP-QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS--H 81 (343)
Q Consensus 6 ~~~~~~~~~~~-~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~--~ 81 (343)
++....++.|+ ....|+++.=+| -=+.++.|..+++ +-++++..+. .+.++.+. ++|++++|. .
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~-----ViifNlK~dk---il~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGT-----VIIFNLKFDK---ILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred eccCcEEEEecccccceeEeccCC----cceEEEEeccCce-----EEEEEcccCc---EEEEEEccccceeEEEeccCC
Confidence 34445566664 335777777777 4578999998876 5599996533 35677786 999999999 4
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEEEEcCCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKRVYDGNG 156 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~ 156 (343)
...|++|+..|.+.+||+++.....+.+ ..|.+.|....+. ...+++++.|+.+++|-.+++. ...+...+|.
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~--nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTR--NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeee--ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 4678888888999999998655444443 3688999999887 6788899999999999665421 3445556676
Q ss_pred ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCC-------------------------eeEEeccc--------
Q 019258 157 LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGP-------------------------VLQFKGNF-------- 201 (343)
Q Consensus 157 ~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~-------------------------~~~~~~~~-------- 201 (343)
. +..|+.|.. +..+++++.|++++.+++.+....+. +..+....
T Consensus 335 ~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 335 A-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred C-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 6 899999985 77889999999999988754111111 10000000
Q ss_pred ---CCCCC-------------------------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 202 ---GSQGK-------------------------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 202 ---~~~~~-------------------------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
.+++. ....+.+++.++-|. ..+.|++.|.|-+|++..+-....+-
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~----- 487 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRKSFG----- 487 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeecccc-----
Confidence 00000 004577888888775 45679999999999998764444431
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc---------------------------
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF--------------------------- 306 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~--------------------------- 306 (343)
-...|..+|.+|+.+..+. .+++|+.+|-+..|+-+....
T Consensus 488 ---~~~ah~~~V~gla~D~~n~----------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 488 ---DSPAHKGEVTGLAVDGTNR----------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ---cCccccCceeEEEecCCCc----------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 0157999999999998777 799999999999998654320
Q ss_pred ----------------cccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 307 ----------------ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 307 ----------------~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
++..+...|++++++| +|++|++++-|+.|++|+-|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEecc
Confidence 1112236799999999 78999999999999999865
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=137.90 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=186.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC--CCCCCCccCCCCCCeeEEEcc-C-CCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP--ASLTPHSQWTPPTRISSLSTS-H-QSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~--~~~~~~~~~~~~~~v~~v~~~-~-~~~l~~~s~d 91 (343)
.|.+.|++|+|+. +++.|+|++.|+. |++|++.+= ...+++..--..+..+.+.|. + ...+++....
T Consensus 84 gH~~~vt~~~FsS----dGK~lat~~~Dr~-----Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 84 GHKKEVTDVAFSS----DGKKLATISGDRS-----IRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ccCCceeeeEEcC----CCceeEEEeCCce-----EEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 3788999999999 9999999999965 779999441 112222222222456788898 3 3445555567
Q ss_pred CcEEEEEccCce----eeee-----eccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 92 GSLHVLSSAMQV----LLSV-----DENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 92 g~v~v~~~~~~~----~~~~-----~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
.++++|.+...+ .... .+....|+-++-.+-.- +.++++++.|..|.+|+++ + +....++.... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~-~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQS-SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccc-cc
Confidence 789999876221 1111 12233455566665554 7899999999999999998 4 35555554444 56
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEEccc--cCCCC---CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEE
Q 019258 161 NCVKWAS-PTEFVTGGFGYGLQWWDLRR--AGSGG---PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~d~~i~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~ 234 (343)
+..+.+| +..+++++..--|++|.+-- ++..+ .+.++++|. ..|..++|+|+... +++.+.||+++
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-------saV~~~aFsn~S~r-~vtvSkDG~wr 303 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-------SAVLAAAFSNSSTR-AVTVSKDGKWR 303 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-------hheeeeeeCCCcce-eEEEecCCcEE
Confidence 6677789 77788888899999998743 01112 233455554 88999999998765 57999999999
Q ss_pred EEEccC----CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 235 AWDLRW----QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 235 iwd~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
+||..- .+.|..+... . .+...-.+.-..+..+|.+. +++.|....|.++..... ..+.+
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g---~-~pl~aag~~p~RL~lsP~g~-----------~lA~s~gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEG---S-APLHAAGSEPVRLELSPSGD-----------SLAVSFGSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EeeccceEecCCCchHhhcC---C-cchhhcCCCceEEEeCCCCc-----------EEEeecCCceEEEEcccCccchhH
Confidence 999743 2222222110 0 00111222334899999876 455555566777655322 22222
Q ss_pred cc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ...|.++.+++ +|.++++-+|- .++++.
T Consensus 369 e~~h~~~Is~is~~~-~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 369 EDIHSTTISSISYSS-DGKYIATCGDR-YVRVIR 400 (420)
T ss_pred HHhhcCceeeEEecC-CCcEEeeecce-eeeeec
Confidence 22 46899999999 67888877744 555543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=145.98 Aligned_cols=250 Identities=15% Similarity=0.053 Sum_probs=177.7
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC------ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM------QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRV 137 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~------~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v 137 (343)
...|.|.|+++.|+ ++..|++|+.|-.+++|.+.. ..++.+.. ..|...|.++.|+ ...+.+|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~--~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME--HPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc--CccccceEEEEEccCCeeEecCCCccee
Confidence 36789999999999 889999999999999999862 23333333 3477899999999 6677899999999
Q ss_pred EEEECCCCceEEEEEcC-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEE
Q 019258 138 NLVSVIGGGEFKRVYDG-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSV 214 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v 214 (343)
.+.|+++.. ..-++.. .....|+.+.-+| .+.|++.+.++.|.+||.|. ...++..+. ...+ ...+++
T Consensus 130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd--~~~~~~~~~~AN~~------~~F~t~ 200 (609)
T KOG4227|consen 130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD--RQNPISLVLPANSG------KNFYTA 200 (609)
T ss_pred Eeeecccce-eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC--CCCCCceeeecCCC------ccceee
Confidence 999999874 3333322 2122699999999 89999999999999999998 333443322 2221 568899
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.|+|..+.++++.++.|-+.+||.|.++.++...+.-.+ .+........+.|+|.+. ++++--...
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----L~~~~~~~M~~~~~~~G~----------Q~msiRR~~ 266 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----LPQENTEWMGSLWSPSGN----------QFMSIRRGK 266 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----CcccchhhhheeeCCCCC----------eehhhhccC
Confidence 999999999999999999999999987665433211100 011133457889999887 555543332
Q ss_pred eEEEEecCC-Ccccc--------cccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 295 ILAVVEQGE-EPFEL--------LAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 295 ~i~~~~~~~-~~~~~--------~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.=.+++.-. ....+ +-+.+.+.|+.+-++ ..+++|+|+-.||+|+.|
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecC
Confidence 222222211 11111 222467889998873 679999999999999976
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=151.15 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=205.9
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCC---CCccCC-CCCCeeEEEcc-CCCeEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLT---PHSQWT-PPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~---~~~~~~-~~~~v~~v~~~-~~~~l~~ 87 (343)
.+.|.+.|+++.|+| .+..|+++|+|+. +-+|.-.++. .+. .+-... ..+...+.-|+ +++.+++
T Consensus 263 l~GHeDWV~sv~W~p----~~~~LLSASaDks-----miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHP----EGLDLLSASADKS-----MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred hcCcccceEEEEEcc----chhhheecccCcc-----eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 347999999999999 6788999999964 6688764431 111 122222 23457778888 8888999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC--------------------
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-------------------- 145 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-------------------- 145 (343)
-+..|..++|...+...-.......+|.+.|.+++|. |++++++|.|-+-+++---..
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 9999999999954433334444556899999999999 999999999988777532100
Q ss_pred --------------ceEEE-------------------------------------------------------------
Q 019258 146 --------------GEFKR------------------------------------------------------------- 150 (343)
Q Consensus 146 --------------~~~~~------------------------------------------------------------- 150 (343)
.++.+
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 00000
Q ss_pred --------------------------EEcCCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEe
Q 019258 151 --------------------------VYDGNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 151 --------------------------~~~~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.+-+|.. .|++++.+| ++.+++++. ...|++|.... -.....+.
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy-Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~ 569 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY-EVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---WLQVQELE 569 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCce-eEEEEEecCCCCEEeehhhhCCccceEEEEEeccc---hhhhheec
Confidence 0012222 588888888 777887765 34588999876 34445566
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCc
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSN 278 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 278 (343)
.|. --|+.++|+|+++++ ++.+.|+++.+|..........-+. ..+.|.--||+..|+|+..
T Consensus 570 ~Hs-------LTVT~l~FSpdg~~L-LsvsRDRt~sl~~~~~~~~~e~~fa-------~~k~HtRIIWdcsW~pde~--- 631 (764)
T KOG1063|consen 570 GHS-------LTVTRLAFSPDGRYL-LSVSRDRTVSLYEVQEDIKDEFRFA-------CLKAHTRIIWDCSWSPDEK--- 631 (764)
T ss_pred ccc-------eEEEEEEECCCCcEE-EEeecCceEEeeeeecccchhhhhc-------cccccceEEEEcccCcccc---
Confidence 665 559999999999765 6889999999998744222111110 1178999999999999987
Q ss_pred CCCCCccceEEEecCCeEEEEecCCCccccc------ccccccceeeecCCC----CCeeEEccCCceEEEEeCC
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEEPFELL------AEPCAINSFDIDPQN----PSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~------~~~~~i~s~~~~~~~----~~~l~~~~~~~~i~~~~~~ 343 (343)
+++|||.|.++.+|...+.+.... ....+|.++++.|.. ++.|+.|.+.|.|++|+++
T Consensus 632 -------~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 632 -------YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred -------eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 799999999999998765532222 224678888876543 4478899999999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=146.33 Aligned_cols=256 Identities=15% Similarity=0.180 Sum_probs=177.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v 94 (343)
+.+.-..++|+-.....+.++|.|++-+- |++.|+....-. .....|.+.|+.++|+ ++++++++|.|.+|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~Gv-----IrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGV-----IRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeE-----EEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 66778888998864445677777776543 678888442211 2345789999999999 77899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEE-------------------
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKR------------------- 150 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~------------------- 150 (343)
++|++++...+.+.....+|.+.|.+++|+ +..|+|||.|.++++|++.... .+..
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999888888888778899999999999 8999999999999999997321 0000
Q ss_pred -----EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC------CCCCcccCeE--EEEEc
Q 019258 151 -----VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG------SQGKASGMIH--SVDIH 217 (343)
Q Consensus 151 -----~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~i~--~v~~~ 217 (343)
...-|.. .|.|+.|. ++.+++-+-++.|..|-.-+ -.+.+.+.+..+. +.......|. ..+|+
T Consensus 241 fp~fst~diHrn-yVDCvrw~-gd~ilSkscenaI~~w~pgk--l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 241 FPDFSTTDIHRN-YVDCVRWF-GDFILSKSCENAIVCWKPGK--LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred cccccccccccc-hHHHHHHH-hhheeecccCceEEEEecch--hhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence 0011121 45555554 47789999999999998722 1222111110000 0000012233 44556
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|-+ .++|.|.+.|.|++||++..+.+.... ..+......|.+.+|+.++. .|+.+.+|++|+
T Consensus 317 ~~~-~~la~gnq~g~v~vwdL~~~ep~~~tt-------l~~s~~~~tVRQ~sfS~dgs----------~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 317 PWQ-KMLALGNQSGKVYVWDLDNNEPPKCTT-------LTHSKSGSTVRQTSFSRDGS----------ILVLVCDDGTVW 378 (385)
T ss_pred HHH-HHHhhccCCCcEEEEECCCCCCccCce-------EEeccccceeeeeeecccCc----------EEEEEeCCCcEE
Confidence 654 467899999999999999865432211 11133456799999999987 789999999999
Q ss_pred EEec
Q 019258 298 VVEQ 301 (343)
Q Consensus 298 ~~~~ 301 (343)
-|+.
T Consensus 379 rwdr 382 (385)
T KOG1034|consen 379 RWDR 382 (385)
T ss_pred EEEe
Confidence 9985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-19 Score=156.55 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=120.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC---CccCCCCC-CeeEEEcc-CCCeEEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP---HSQWTPPT-RISSLSTS-HQSLVAAS 88 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~---~~~~~~~~-~v~~v~~~-~~~~l~~~ 88 (343)
-.-|++.|+.+.|+| =...+|+|||.|.. ++||.++.....++ ...+.+.. .|.++.|+ ..+-|++.
T Consensus 75 l~~H~d~VtDl~Fsp---F~D~LLAT~S~D~~-----VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s 146 (1012)
T KOG1445|consen 75 LAAHGDQVTDLGFSP---FADELLATCSRDEP-----VKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS 146 (1012)
T ss_pred eecccceeeccCccc---cchhhhhcccCCCe-----eEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe
Confidence 346999999999999 45678999999976 55999974333222 22334433 58899999 44556666
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+..|+++|||+.+.+++.-. .+|...|-+.+|+ |..+++.+.|..|++||-+....+.+..+.|....=..+.|.
T Consensus 147 ~a~g~v~i~D~stqk~~~el---~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~ 223 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVEL---SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA 223 (1012)
T ss_pred ccCceEEEEEcccCceeecc---cCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeec
Confidence 67889999999976655333 3699999999999 899999999999999999885566777777876444556666
Q ss_pred C-CCEEEEEeC----CCcEEEEEccc
Q 019258 167 S-PTEFVTGGF----GYGLQWWDLRR 187 (343)
Q Consensus 167 ~-~~~l~t~~~----d~~i~iwd~~~ 187 (343)
. ..+|++.+. -..|++||.|.
T Consensus 224 Gn~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 224 GNWERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred cchhhhhhcccchhhheeeeeeeccc
Confidence 5 345666555 45688888876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-17 Score=129.60 Aligned_cols=278 Identities=15% Similarity=0.121 Sum_probs=186.9
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--------CCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--------PASLTPHSQWTPPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--------~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d 91 (343)
.|..-+|+| ..++|+.|+.+++ |.+.+++. +.+.+.+....|.++|+.++|. .++|+++ .|
T Consensus 12 tvf~qa~sp----~~~~l~agn~~G~-----iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~-gd 80 (325)
T KOG0649|consen 12 TVFAQAISP----SKQYLFAGNLFGD-----IAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSG-GD 80 (325)
T ss_pred HHHHHhhCC----cceEEEEecCCCe-----EEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeec-cC
Confidence 455668888 7889999998876 55776622 1122334456799999999998 4555555 45
Q ss_pred CcEEEEEccCcee-eeee---c-cCCccc-----cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 92 GSLHVLSSAMQVL-LSVD---E-NSGFHV-----GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 92 g~v~v~~~~~~~~-~~~~---~-~~~~h~-----~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
|.|+-|..++..+ .... + ....|. ..|+++... .+.++.++.|+.+.-||++++ ...+.+.+|.. .
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtD-Y 158 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTD-Y 158 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcc-e
Confidence 9999998873322 1000 0 111233 357887776 667777889999999999999 58888888887 8
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC---CCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
+.++.--. ...+++|+.||++|+||+++ ++.+..+....... .....+|.+++.+.+ ++ + ++....+.+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt---~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--Wl-v-CGgGp~lsl 231 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKT---QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WL-V-CGGGPKLSL 231 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccc---cceeEEeccccChhhcCcccCceeEEEeccCc--eE-E-ecCCCceeE
Confidence 99988744 88899999999999999999 77776655332111 112267888887653 44 3 455578999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-ccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-AEPCA 314 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~~~~~ 314 (343)
|.+|..+....+. -.+.+..+.|..+ .++++++.+.+.-|..+....-.. .++..
T Consensus 232 whLrsse~t~vfp------------ipa~v~~v~F~~d------------~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~ 287 (325)
T KOG0649|consen 232 WHLRSSESTCVFP------------IPARVHLVDFVDD------------CVLIGGEGNHVQSYTLNGVLQANIPVESTA 287 (325)
T ss_pred EeccCCCceEEEe------------cccceeEeeeecc------------eEEEeccccceeeeeeccEEEEeccCCccc
Confidence 9999855443333 3566778888743 688888888888887754332211 12222
Q ss_pred cc--eeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 315 IN--SFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 315 i~--s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.+ +...+| . +++-.++-..+++|++.+
T Consensus 288 c~s~s~~~~p-~-k~~s~ag~s~~~~i~~~~ 316 (325)
T KOG0649|consen 288 CYSASWQTSP-I-KFISIAGFSNKLHILKDF 316 (325)
T ss_pred eeeecccCCc-e-EEEEecccceeeeeeecc
Confidence 33 334445 2 555556666788888753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=157.17 Aligned_cols=289 Identities=12% Similarity=0.075 Sum_probs=189.0
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc---CCCeEEEEcCCCcEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS---HQSLVAASTLSGSLHV 96 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v 96 (343)
...+.++| ..+.++++. |++ ++.+||..+.....-+.. ......|+++++. +..+|++++.||.|+|
T Consensus 1067 pk~~~~hp----f~p~i~~ad-~r~----~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1067 PKTLKFHP----FEPQIAAAD-DRE----RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CceeeecC----CCceeEEcC-Ccc----eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 45567777 666666652 333 578999855332211111 1234579999998 6678999999999999
Q ss_pred EEcc-Cc--eeeeeeccC--Ccc----ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 97 LSSA-MQ--VLLSVDENS--GFH----VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 97 ~~~~-~~--~~~~~~~~~--~~h----~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|+-. .. ..-.+..+. ..+ .+.=.-++|. ..+++++|+-..|++||......+..+. ....+.++++.-
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-YGSSTLVTALSA 1216 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-cCCCccceeecc
Confidence 9754 21 111111111 011 1111345666 6677777778999999999875444443 334447888876
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+. ++.+++|-.||.|++||.|...+...+...+.|.. . .+|..+.+.+.|-.-+++|+.||.|++||+|.. .
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-~----~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~ 1290 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-V----EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-S 1290 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCC-c----ccceeEEeecCCCcceeeeccCCeEEEEecccC-c
Confidence 55 68899999999999999999333334445554441 1 339999999987666789999999999999984 2
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc-------cccc
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE-------PCAI 315 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~-------~~~i 315 (343)
...+..+. .+....+.++++..|++.+ .+++|+. +.|.+|+...+ ...+..+ ..++
T Consensus 1291 ~e~~~~iv-----~~~~yGs~lTal~VH~hap----------iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1291 KETFLTIV-----AHWEYGSALTALTVHEHAP----------IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred ccccceee-----eccccCccceeeeeccCCC----------eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 22222100 0011123589999999987 5777777 99999997543 2222222 2568
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.++.+||- --.+++|+.|..|.||+-
T Consensus 1355 scL~FHP~-~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1355 SCLAFHPH-RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ceeeecch-hHhhhhccCCceEEEeec
Confidence 99999994 367888988888888863
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=142.38 Aligned_cols=240 Identities=16% Similarity=0.212 Sum_probs=176.2
Q ss_pred ccccCCcccceeeEEecCC---CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC---CeeEEEcc-CCC
Q 019258 11 QVHRFPQSKYIDAVRWLPP---LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT---RISSLSTS-HQS 83 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~---~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~---~v~~v~~~-~~~ 83 (343)
...+++.+..|..-+|-|. .+|+..++++.+.|+. |.+||..+..-.-......|.. ...+++|+ ++.
T Consensus 97 ~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P-----Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 97 LSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP-----IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred eeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc-----eeeeeccccccccchhhhhhHHhhhhheeEEecCCCC
Confidence 5678889999999999983 5578899999999977 5599995532221222334433 45689999 888
Q ss_pred eEEEEcCCCcEEEEEcc-Cceeeeee----ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 84 LVAASTLSGSLHVLSSA-MQVLLSVD----ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~-~~~~~~~~----~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
.|++| ....|++|++. .++..... +...+..+-+.+++++ .+.++.++.-.++-++.-.... +..++.+|
T Consensus 172 qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh 249 (406)
T KOG2919|consen 172 QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGH 249 (406)
T ss_pred eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeeccc
Confidence 88876 56689999995 22221111 1122335678888888 5678889988888888877763 66666677
Q ss_pred CccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 156 GLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.. .|+.++|.+ ++.|++|+. |..|..||+|. ...++..+..|.+.. ..---.+..|.++ ++++|+.||.|
T Consensus 250 ~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~--~~~pv~~L~rhv~~T----NQRI~FDld~~~~-~LasG~tdG~V 321 (406)
T KOG2919|consen 250 GG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY--SRDPVYALERHVGDT----NQRILFDLDPKGE-ILASGDTDGSV 321 (406)
T ss_pred CC-CeeeEEeccCcCeecccccCCCeEEEEeehh--ccchhhhhhhhccCc----cceEEEecCCCCc-eeeccCCCccE
Confidence 76 899999999 888998888 99999999999 667777777665211 2223345568775 67899999999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+||++....+.... ..|...++.|+++|.-+
T Consensus 322 ~vwdlk~~gn~~sv~----------~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 322 RVWDLKDLGNEVSVT----------GNYSDTVNGVSLNPIMP 353 (406)
T ss_pred EEEecCCCCCccccc----------ccccccccceecCcccc
Confidence 999999866655555 57889999999999866
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=142.62 Aligned_cols=207 Identities=17% Similarity=0.114 Sum_probs=159.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceee----eeeccCCccccCeEEEEec---CCEEEEEeCCCcEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLL----SVDENSGFHVGPISGVDLT---GSECVSVGEDGRVN 138 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~----~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~ 138 (343)
-+|.++|.+++|+ ++..+++||.|-+|.||++.++... .......+|...|.-+.|+ .+.|+|+|.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 4799999999999 8889999999999999999733211 1112234799999999999 78999999999999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+|++.++..+..+ . |.. .|++++|+. +.+++|++.|+.||+||.|. ++.+..-..|.+++ -..+-|-
T Consensus 158 iWnv~tgeali~l-~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~~~heG~k------~~Raifl 225 (472)
T KOG0303|consen 158 IWNVGTGEALITL-D-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEGVAHEGAK------PARAIFL 225 (472)
T ss_pred EEeccCCceeeec-C-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC---CcEeeecccccCCC------cceeEEe
Confidence 9999999655554 4 444 699999999 99999999999999999999 77777776776533 4455566
Q ss_pred CCCCeEEEEEe---cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 218 PSRKHTCLAGG---SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 218 p~~~~~~~sg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.++. ++.+|. ++.++.+||..+.+.|..+..++ ....|.==-|.|+... ..+.|-.|+
T Consensus 226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD---------tSnGvl~PFyD~dt~i---------vYl~GKGD~ 286 (472)
T KOG0303|consen 226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD---------TSNGVLLPFYDPDTSI---------VYLCGKGDS 286 (472)
T ss_pred ccCc-eeeeccccccccceeccCcccccCcceeEEec---------cCCceEEeeecCCCCE---------EEEEecCCc
Confidence 6665 666655 48899999999988888777443 2344555556777663 444566899
Q ss_pred eEEEEecCCCc
Q 019258 295 ILAVVEQGEEP 305 (343)
Q Consensus 295 ~i~~~~~~~~~ 305 (343)
.|+.++...+.
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 99999876544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=134.95 Aligned_cols=242 Identities=11% Similarity=0.084 Sum_probs=171.9
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEEC
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~ 142 (343)
..+.++. ..|+.|+ .+.+|++|..||.|.|||+.+. .+.+...+|..+|++++|+ |..++++|.|..+++||+
T Consensus 19 ~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred eeccCCc-cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3445544 7899999 9999999999999999999843 3445556899999999999 999999999999999999
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
..+. +...+.... +|+...|+| .+.+++.-.+..-.+-++.. +...+......... .....+..|++.|
T Consensus 95 ~~gs-~l~rirf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-----~~h~~Lp~d~d~dl-n~sas~~~fdr~g 165 (405)
T KOG1273|consen 95 LKGS-PLKRIRFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSD-----PKHSVLPKDDDGDL-NSSASHGVFDRRG 165 (405)
T ss_pred cCCC-ceeEEEccC--ccceeeeccccCCeEEEEEecCCcEEEEecC-----CceeeccCCCcccc-ccccccccccCCC
Confidence 9986 444444443 699999999 55666655555555555532 33333322211111 1223344578877
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+ +++|...|.+.++|..+.+....+. ......|.++.++..+. .++.-+.|..|+.++
T Consensus 166 ~y-IitGtsKGkllv~~a~t~e~vas~r----------its~~~IK~I~~s~~g~----------~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 166 KY-IITGTSKGKLLVYDAETLECVASFR----------ITSVQAIKQIIVSRKGR----------FLIINTSDRVIRTYE 224 (405)
T ss_pred CE-EEEecCcceEEEEecchheeeeeee----------echheeeeEEEEeccCc----------EEEEecCCceEEEEe
Confidence 65 4689999999999998865544443 22247799999998877 688899999999988
Q ss_pred cCCCc-------cccccc------ccccceeeecCCCCCeeEEccCC-ceEEEEeC
Q 019258 301 QGEEP-------FELLAE------PCAINSFDIDPQNPSDVICSLEW-ESIAIVSR 342 (343)
Q Consensus 301 ~~~~~-------~~~~~~------~~~i~s~~~~~~~~~~l~~~~~~-~~i~~~~~ 342 (343)
..+-. .+.... ..+-+++.+++ +|.|+++|+.- .++|||.+
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEec
Confidence 64211 111111 24567788887 77888888743 58999986
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=137.31 Aligned_cols=276 Identities=11% Similarity=0.167 Sum_probs=186.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC------CC-----CCCccCCCCCCeeEEEcc--------
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA------SL-----TPHSQWTPPTRISSLSTS-------- 80 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~------~~-----~~~~~~~~~~~v~~v~~~-------- 80 (343)
.....+|+| ++..|++-+.|+. |.+|+++-+. .. .+.........|...+|.
T Consensus 51 f~kgckWSP----DGSciL~~sedn~-----l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 51 FLKGCKWSP----DGSCILSLSEDNC-----LNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hhccceeCC----CCceEEeecccCe-----eeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 345678999 9999999999975 7799995321 11 111112344567777764
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcccc---CeEEEEec--CCEEEEEeCCCcEEEEECCC-Cce--EEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVG---PISGVDLT--GSECVSVGEDGRVNLVSVIG-GGE--FKRVY 152 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~---~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-~~~--~~~~~ 152 (343)
+..++++.+.+.-|++||.-+++.....+.. -|.. ...+++|+ |.+|+ ++...+|+++|+.. +.. ...+.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchhhh
Confidence 4568888899999999998765533222211 2433 45788998 55554 56677899999943 321 11111
Q ss_pred cC---CCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 153 DG---NGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 153 ~~---~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.. ....-+.+++|+| ...++.+++...+-|+.-.. ..|+..+.++. +-|+-++|+++|..++.-+
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl~llggh~-------gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPLQLLGGHG-------GGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---CCceeeecccC-------CCeeeEEeccCcCeecccc
Confidence 11 1122588999999 55788899888888877655 67777777665 7799999999998876545
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccc-cEEEEEE--eecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES-EVWEVQY--DCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~--~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-.|-.|..||+|....|+-.+ ..|.+ .=..|.| .|.+. .|++++.||.|++|+.+..
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L----------~rhv~~TNQRI~FDld~~~~----------~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYAL----------ERHVGDTNQRILFDLDPKGE----------ILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred cCCCeEEEEeehhccchhhhh----------hhhccCccceEEEecCCCCc----------eeeccCCCccEEEEecCCC
Confidence 568899999999988877665 34444 3334555 45555 7999999999999998653
Q ss_pred ---cccccccccccceeeecCCCCCeeEEccCCceEE
Q 019258 305 ---PFELLAEPCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 305 ---~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+..+......+|.+.++|- --++|.+...+++
T Consensus 330 gn~~sv~~~~sd~vNgvslnP~--mpilatssGqr~f 364 (406)
T KOG2919|consen 330 GNEVSVTGNYSDTVNGVSLNPI--MPILATSSGQRIF 364 (406)
T ss_pred CCcccccccccccccceecCcc--cceeeeccCceee
Confidence 3333344678999999993 3344444444443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=141.31 Aligned_cols=263 Identities=14% Similarity=0.115 Sum_probs=183.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC---CCCCC--CccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP---ASLTP--HSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~---~~~~~--~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.|...|++|.|+. ++++||+|+.|.. .++|++..- ..+++ +..-.|...|.|++|. ....+++|.
T Consensus 54 ~H~GCiNAlqFS~----N~~~L~SGGDD~~-----~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 54 EHTGCINALQFSH----NDRFLASGGDDMH-----GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhccccceeeecc----CCeEEeecCCcce-----eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 3667899999999 7999999998864 569998321 11233 3444566889999999 888999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCccceEEEEeC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKWA 166 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~ 166 (343)
.+|+|.+.|+...+.+-+.... -..+.|..++.+ .+.|++.+.++.|.+||.+....+...+ ..........+.|+
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999977777665422 245689999988 8999999999999999998753233222 22222368999999
Q ss_pred C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCC-----------------------C---------------
Q 019258 167 S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG-----------------------K--------------- 206 (343)
Q Consensus 167 ~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------------~--------------- 206 (343)
| +.++++.+..+.+-+||.|. +..++.+..+..+-+. .
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~--~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~ 281 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRM--QARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL 281 (609)
T ss_pred CCCceeEEeccccCCCCceeecc--ccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE
Confidence 9 78899999999999999987 4333322111000000 0
Q ss_pred ----------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC------------CCcccccCCcccc
Q 019258 207 ----------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG------------TGEAVTHSLSESE 264 (343)
Q Consensus 207 ----------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~------------~~~~~~~~~h~~~ 264 (343)
....+.+++|-.+ +-+++|+.+-.|++|-+-.......+.+++ .+..++..+|..-
T Consensus 282 k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv 359 (609)
T KOG4227|consen 282 KSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSV 359 (609)
T ss_pred eccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccc
Confidence 0011233333322 336899999999999874422222211122 1344566899999
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++|.|+|++. .|++.+-...+++|..-
T Consensus 360 ~NQVRF~~H~~----------~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 360 PNQVRFSQHNN----------LLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccceeecCCcc----------eEeccchhhheeccccc
Confidence 99999999977 78888899999999753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=139.52 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=136.6
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENS 111 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~ 111 (343)
..+|++-..+ ++++++....... ...-.+++.++.+.|. .+..+.+++.||+|++||++...+.....+.
T Consensus 41 ~~vav~lSng-----sv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNG-----SVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCC-----eEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 3455554443 3668888542111 2223567788999998 4577999999999999999965555555543
Q ss_pred Cccc-cCeEEEEec--CCEEEEEe----CCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEE
Q 019258 112 GFHV-GPISGVDLT--GSECVSVG----EDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQ 181 (343)
Q Consensus 112 ~~h~-~~v~~~~~~--~~~~~s~s----~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~ 181 (343)
.|. .+-.+++.+ ++.+++|. .|-.|.+||++..++ +....+.|.. -|++++|+| ++.|++|+.||.|.
T Consensus 114 -~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 114 -QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-DVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred -CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-cceeEEecCCCCCeEEeecccceEE
Confidence 344 577888887 55555553 456799999998766 4555566665 799999999 88999999999999
Q ss_pred EEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 182 WWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+||+..++...++.+...+. ..|.++.|+.++...+.+-+..++..+|++..+
T Consensus 192 lfD~~~d~EeDaL~~viN~~-------sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHG-------SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred eeecCCCcchhhHHHhhccc-------ceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99998843334444443333 669999999888555677788899999988654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=136.39 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=140.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNG 156 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~ 156 (343)
+..++++.++|.|++||..+.+.+...+ +|...++.+.|. ...+.+|+.||+|++||++...+ .+..+..+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk---~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFK---GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheec---CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 4779999999999999998655444433 466666666665 67899999999999999987433 333333343
Q ss_pred ccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..+..+++.+- .+.+++|.. +-.|.+||.|. ..+++..+. .|. .-|+++.|||+.++++++|+.|
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~qq~l~~~~eSH~-------DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS--EQQLLRQLNESHN-------DDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEecc--ccchhhhhhhhcc-------CcceeEEecCCCCCeEEeeccc
Confidence 33677888765 555666544 78899999999 344465543 333 6799999999999999999999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
|.|.+||++....--.+... -.|...|-.+.|+...-. .++.-+.+.+..+|+...
T Consensus 188 GLvnlfD~~~d~EeDaL~~v--------iN~~sSI~~igw~~~~yk---------rI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHV--------INHGSSIHLIGWLSKKYK---------RIMCLTHMETFAIYELED 243 (376)
T ss_pred ceEEeeecCCCcchhhHHHh--------hcccceeeeeeeecCCcc---------eEEEEEccCceeEEEccC
Confidence 99999999875332222100 246678999999987754 678888999988887643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=136.97 Aligned_cols=250 Identities=16% Similarity=0.180 Sum_probs=178.7
Q ss_pred CCCCCeeEEEcc-----CCCeEEEEcCCCcEEEEEccCceeeeeecc--CCccccCeEEEEec------CCEEEEEeCCC
Q 019258 69 TPPTRISSLSTS-----HQSLVAASTLSGSLHVLSSAMQVLLSVDEN--SGFHVGPISGVDLT------GSECVSVGEDG 135 (343)
Q Consensus 69 ~~~~~v~~v~~~-----~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~--~~~h~~~v~~~~~~------~~~~~s~s~dg 135 (343)
.|..+|.+++|. +...+++......+.+|.....-.+..... ...|...-..++|. ...++.+|.-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 566789999987 455555666666899999874333322221 11355666777776 34678889999
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.|++.|+.+++ ....+.+|+. .|..++++| ++++++++.|..||+|++++ ..++.-|-+..+|+ +.|-+
T Consensus 116 vIrVid~~~~~-~~~~~~ghG~-sINeik~~p~~~qlvls~SkD~svRlwnI~~---~~Cv~VfGG~egHr----deVLS 186 (385)
T KOG1034|consen 116 VIRVIDVVSGQ-CSKNYRGHGG-SINEIKFHPDRPQLVLSASKDHSVRLWNIQT---DVCVAVFGGVEGHR----DEVLS 186 (385)
T ss_pred EEEEEecchhh-hccceeccCc-cchhhhcCCCCCcEEEEecCCceEEEEeccC---CeEEEEeccccccc----CcEEE
Confidence 99999999884 6666667776 899999999 77999999999999999999 78888888887767 88999
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC------CCC-----------cccccCCccccEEEEEEeecCCC
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV------GTG-----------EAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~------~~~-----------~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
++|++++.. +++++.|.++++|++..++.+..+... ... +-.+-..|...|-++.|-.+
T Consensus 187 vD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd--- 262 (385)
T KOG1034|consen 187 VDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD--- 262 (385)
T ss_pred EEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh---
Confidence 999999984 689999999999999854322111100 000 00011457778888888742
Q ss_pred CcCCCCCccceEEEecCCeEEEEecCC--Cc------c----ccccc----ccc--cceeeecCCCCCeeEEccCCceEE
Q 019258 277 SNISSSRVLPAMFCSEDGILAVVEQGE--EP------F----ELLAE----PCA--INSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~------~----~~~~~----~~~--i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
+++|-|-++.|..|+.++ +. . +.+.+ .+. .-.|++++ -.+.|++|...|.+|
T Consensus 263 ---------~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 263 ---------FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVY 332 (385)
T ss_pred ---------heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEE
Confidence 789999999999999842 11 1 11111 122 34455665 358999999999999
Q ss_pred EEe
Q 019258 339 IVS 341 (343)
Q Consensus 339 ~~~ 341 (343)
+|+
T Consensus 333 vwd 335 (385)
T KOG1034|consen 333 VWD 335 (385)
T ss_pred EEE
Confidence 996
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=145.79 Aligned_cols=247 Identities=13% Similarity=0.174 Sum_probs=176.3
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC----CCCCccCCCCCCeeEEEcc---CCCeEEEEcC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS----LTPHSQWTPPTRISSLSTS---HQSLVAASTL 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~----~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~ 90 (343)
...|.+++++| -++.++|.|.++++ +.+||+..... ..+...-.|..+++.+.|. .+.-+++++.
T Consensus 242 ~s~v~~~~f~p---~~p~ll~gG~y~Gq-----V~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCP---FDPNLLAGGCYNGQ-----VVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEecc---CCcceEEeeccCce-----EEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 35699999999 67889999999976 66999954332 2334456788899999998 3355999999
Q ss_pred CCcEEEEEccCcee---eeeeccCCcc-------ccCeEEEEec---CCEEEEEeCCCcEEEEE---CCCCc----eEEE
Q 019258 91 SGSLHVLSSAMQVL---LSVDENSGFH-------VGPISGVDLT---GSECVSVGEDGRVNLVS---VIGGG----EFKR 150 (343)
Q Consensus 91 dg~v~v~~~~~~~~---~~~~~~~~~h-------~~~v~~~~~~---~~~~~s~s~dg~v~~wd---~~~~~----~~~~ 150 (343)
||.|+.|+++.... ...... ..| ...++++.|. ...|+.|+.+|.|.--+ ..... ....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~-~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLES-KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred CCcEeeeeccccccchhhccccc-ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 99999998872211 111111 111 2367888887 77899999999987632 22221 1122
Q ss_pred EEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 151 VYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+..|.. +|+++.++| ...|++++ |-+++||.... ...|+..+..+. ..+++++|+|..+-+|+++.
T Consensus 393 ~~~~h~g-~v~~v~~nPF~~k~fls~g-DW~vriWs~~~--~~~Pl~~~~~~~-------~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 393 TFITHIG-PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV--IASPLLSLDSSP-------DYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cccccCc-ceEeeecCCCccceeeeec-cceeEeccccC--CCCcchhhhhcc-------ceeeeeEEcCcCceEEEEEc
Confidence 3334444 799999999 44555555 99999999873 267777776554 66999999999999999999
Q ss_pred cCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 229 SSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 229 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
.||.+.+||+... ..|.... ..+......+.|++.+. .|+.|.+.|.+.+++....
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~----------~~~~~~l~~~~~s~~g~----------~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQ----------KVCSPALTRVRWSPNGK----------LLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCCceehhhhhccccCCcccc----------cccccccceeecCCCCc----------EEEEecCCCcEEEEEcCch
Confidence 9999999999764 3344433 34455567777777676 6888899999999987543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-16 Score=127.68 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=153.7
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--eeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEEC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~ 142 (343)
.|.+.|++++|+ ++..|++.+.|+.|++|++.+... -...+. +...+--+.+.|. ...++++-...++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 688999999999 999999999999999999974221 111110 0111233566666 556777777888999977
Q ss_pred CC---CceEEEE--Ec-----CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 143 IG---GGEFKRV--YD-----GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 143 ~~---~~~~~~~--~~-----~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
.. +...... ++ ..+...+..+-... ...+++++.|..|.+||++. +.+..+.... ..-
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG----q~L~~idtnq-------~~n 231 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG----QLLQSIDTNQ-------SSN 231 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC----ceeeeecccc-------ccc
Confidence 43 2111111 11 11111344444444 77899999999999999965 5555554332 446
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEcc---CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLR---WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
+..+.+|+|+.+ ++++---.|++|..- .+.. ... ...+..++|...|..++|+++.. .++
T Consensus 232 ~~aavSP~GRFi-a~~gFTpDVkVwE~~f~kdG~f-qev-----~rvf~LkGH~saV~~~aFsn~S~----------r~v 294 (420)
T KOG2096|consen 232 YDAAVSPDGRFI-AVSGFTPDVKVWEPIFTKDGTF-QEV-----KRVFSLKGHQSAVLAAAFSNSST----------RAV 294 (420)
T ss_pred cceeeCCCCcEE-EEecCCCCceEEEEEeccCcch-hhh-----hhhheeccchhheeeeeeCCCcc----------eeE
Confidence 677899999866 555666789999852 2111 000 11222378999999999999877 799
Q ss_pred EEecCCeEEEEecC------CCcccccc-------c-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 289 FCSEDGILAVVEQG------EEPFELLA-------E-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 289 s~s~dg~i~~~~~~------~~~~~~~~-------~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.|.||++++||.+ +.+..|.. . ..|+ .++.+| +|+.|+.+. .-.+.++.
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP-~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSP-SGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCC-CCcEEEeec-CCceEEEE
Confidence 99999999999853 22222111 1 1334 888898 445554443 33455553
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=145.77 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=172.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---C--CCCCC-CccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---P--ASLTP-HSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---~--~~~~~-~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
.|.+-|..+.+.| ....|++++.|+. |.+|++.. . ...++ ++...|.++|.|++.. ++..+++|
T Consensus 292 s~~d~ir~l~~~~----sep~lit~sed~~-----lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 292 SHDDCIRALAFHP----SEPVLITASEDGT-----LKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cchhhhhhhhcCC----CCCeEEEeccccc-----hhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3556677777777 6788999999976 56999922 1 12233 3335699999999999 99999999
Q ss_pred cCCCcEEEEEccCc-------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC-Ccc
Q 019258 89 TLSGSLHVLSSAMQ-------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-GLV 158 (343)
Q Consensus 89 s~dg~v~v~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-~~~ 158 (343)
+-||+|+.|++..+ ....+.....+|.+.|+.+.++ ...|++|+.||+|++|+..... + .++... ...
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC-c-cccCCccccC
Confidence 99999999977511 1122233445799999999998 7789999999999999987653 3 222211 111
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.-.++.+-. ....++...-+.--+.|... ...+..+.............+..+.++|..+ +.+++.+|+.|+++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev---~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEV---VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFF 516 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhh---hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecc
Confidence 244555543 12233333344444455444 3333322221110100114488899999875 66789999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
|.+++ .++.-. .+|...+.++++.|.++ +|++++.||++++|+...+
T Consensus 517 dn~~~-~~l~s~----------~a~~~svtslai~~ng~----------~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 517 DNKTG-KILHSM----------VAHKDSVTSLAIDPNGP----------YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccc-ccchhe----------eeccceecceeecCCCc----------eEEeecCCceeehhhccch
Confidence 99884 444433 57899999999999998 8999999999999988544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=143.86 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=148.9
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..+.|...|..|.|+ .+++|++...+ ..|.|+++.........+ .-.+-|.++.|. ..+++.+ ....|++
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVa-Tq~~vRi 591 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVA-TQRSVRI 591 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh---hcCCceeEEEecCCCceEEEE-eccceEE
Confidence 446788899999999 99999988764 478888887432222121 245678889998 3444444 4556999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
||+.....+..+..+.. .|..++.+| +..++.++.|+.+..+|+.. ..++..++..|. ..+++|+||+
T Consensus 592 YdL~kqelvKkL~tg~k--wiS~msihp~GDnli~gs~d~k~~WfDldl--sskPyk~lr~H~-------~avr~Va~H~ 660 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSK--WISSMSIHPNGDNLILGSYDKKMCWFDLDL--SSKPYKTLRLHE-------KAVRSVAFHK 660 (733)
T ss_pred EehhHHHHHHHHhcCCe--eeeeeeecCCCCeEEEecCCCeeEEEEccc--CcchhHHhhhhh-------hhhhhhhhcc
Confidence 99987644444443333 589999999 88899999999999999987 456777777766 7799999999
Q ss_pred CCCeEEEEEecCCcEEEEE------ccCCc--eeeeeecCCCCcccccCCcccc----EEEEEEeecCCCCcCCCCCccc
Q 019258 219 SRKHTCLAGGSSGTVFAWD------LRWQQ--QSIVLSGVGTGEAVTHSLSESE----VWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd------~~~~~--~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
. ..+|++|+.||++.++- +-+.. .|+..+ .+|... |..+.|||..+ +
T Consensus 661 r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L----------~gH~~~~~~gVLd~~wHP~qp----------W 719 (733)
T KOG0650|consen 661 R-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL----------RGHEKTNDLGVLDTIWHPRQP----------W 719 (733)
T ss_pred c-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec----------cCceeecccceEeecccCCCc----------e
Confidence 6 56899999999999984 32222 244445 556544 99999999988 8
Q ss_pred eEEEecCCeEEEE
Q 019258 287 AMFCSEDGILAVV 299 (343)
Q Consensus 287 l~s~s~dg~i~~~ 299 (343)
|++++.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999997
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-16 Score=139.88 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=197.8
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
...++++....|+.+++.| ++..|+.+..| +|-++|.++......+ -.|...|++++|+ ++.++++|
T Consensus 4 ~~~~r~~~~hci~d~afkP----DGsqL~lAAg~------rlliyD~ndG~llqtL--KgHKDtVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 4 VLTWRDKAEHCINDIAFKP----DGTQLILAAGS------RLLVYDTSDGTLLQPL--KGHKDTVYCVAYAKDGKRFASG 71 (1081)
T ss_pred hhhhhcccccchheeEECC----CCceEEEecCC------EEEEEeCCCccccccc--ccccceEEEEEEccCCceeccC
Confidence 3567778788999999999 77666666545 4779999775544333 3688999999999 99999999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
++|..|.+|.-.-.. + .+. .|...|-|+.|+ ...++||+-.- .-+|..++.. +.. ...+..+.+.+|.
T Consensus 72 ~aDK~VI~W~~klEG-~--LkY--SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K---~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEG-I--LKY--SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSK---HKSSSRIICCSWT 141 (1081)
T ss_pred CCceeEEEecccccc-e--eee--ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHh---hhhheeEEEeeec
Confidence 999999999765222 2 222 499999999999 78888887553 6688876642 221 1222258888998
Q ss_pred C-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC----eEEEEEecCCcEEEEEccCC
Q 019258 167 S-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK----HTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----~~~~sg~~dg~v~iwd~~~~ 241 (343)
. +.+++.|-.+|+|.+-+-. +++-..+....+.. .+|.+++|+|+.. .+++......++.++.+..
T Consensus 142 nDGqylalG~~nGTIsiRNk~----gEek~~I~Rpgg~N----spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG- 212 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN----GEEKVKIERPGGSN----SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG- 212 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC----CCcceEEeCCCCCC----CCceEEEecCCCCCCccceEEEEeccceeEEEEecc-
Confidence 8 8889999999999987532 34444444333222 8899999999742 3455555556666665542
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-ccccceeee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE-PCAINSFDI 320 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~-~~~i~s~~~ 320 (343)
.+.-.. ..-+-.-.++++.|.+. +++.|+.|+.+.++-...-......+ +..|.++..
T Consensus 213 ~~Igk~-----------r~L~FdP~CisYf~NGE----------y~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 213 KQIGKD-----------RALNFDPCCISYFTNGE----------YILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred eeeccc-----------ccCCCCchhheeccCCc----------EEEEccCCCceEEEeecCeEEeeccccceeEEEEEE
Confidence 111100 11223345788998877 79999999999988654433333333 678999999
Q ss_pred cCCCCCeeEEccCCceEEEEe
Q 019258 321 DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+| ++++++-|.-||+|.+||
T Consensus 272 ~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 272 KP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cc-CCceEEEEEccCeeehhh
Confidence 99 679999999999999876
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=124.67 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=191.1
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
+.+.++. -.+.+|++ -+.+||.|..|+. +-|||+.+....+ ..-.|--+|.+++|+ ++++|+++|.|
T Consensus 19 ~tld~~~-a~~~~Fs~----~G~~lAvGc~nG~-----vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSR----WGDYLAVGCANGR-----VVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred eeccCCc-cceEEecc----CcceeeeeccCCc-----EEEEEccccchhh--hhhccccceeEEEecCCCCEeeeecCC
Confidence 3344444 78999999 8999999999964 7799995533221 123577899999999 99999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEc--CCCc--cceEEEE
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYD--GNGL--VGFNCVK 164 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~~--~~v~~~~ 164 (343)
-.|.+||+..+..+...+ -..+|...+|. .+.++.+=.+..-.+-++..++ ...+. .... ....+..
T Consensus 87 ~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ceeEEEeccCCCceeEEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccccccccccc
Confidence 999999998766554443 34689999998 4555555555556666665542 11111 1111 1123335
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|.+ ++++++|...|.+.++|..+ .+.+..++-... ..|..+.+.-.++. |+.-+.|+.|+.|+++.-..
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t---~e~vas~rits~------~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAET---LECVASFRITSV------QAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecch---heeeeeeeechh------eeeeEEEEeccCcE-EEEecCCceEEEEehhhhcc
Confidence 677 89999999999999999998 677777664431 45889999888875 56789999999999863211
Q ss_pred e---------eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CCeEEEEecCCCc-cccccc-
Q 019258 244 S---------IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DGILAVVEQGEEP-FELLAE- 311 (343)
Q Consensus 244 ~---------~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~i~~~~~~~~~-~~~~~~- 311 (343)
+ .+++. .....+..+++|+.++. +++.++. -..|++|+...+. ..+++.
T Consensus 231 ~~r~~e~e~~~K~qD---------vVNk~~Wk~ccfs~dge----------Yv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQD---------VVNKLQWKKCCFSGDGE----------YVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred cCccCCcChhHHHHH---------HHhhhhhhheeecCCcc----------EEEeccccceeEEEEecCCcceeeeecCC
Confidence 1 01110 01234557788888766 5555553 3479999987543 344443
Q ss_pred -ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 -PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 -~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
....-.++|+|- .-.+..-+.|.+|||+
T Consensus 292 kgE~l~DV~whp~--rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 292 KGEELLDVNWHPV--RPIIASIASGVVYIWA 320 (405)
T ss_pred chhheeecccccc--eeeeeeccCCceEEEE
Confidence 246788889983 4455555889999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-15 Score=135.06 Aligned_cols=294 Identities=13% Similarity=0.132 Sum_probs=191.4
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeE-EEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLV-AASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l-~~~s~dg~ 93 (343)
-.|...|++++|.|+.. ...++++|+.|+. +.+|.+.. ++..++..+++ ..+.++++.+.... ...+.|+.
T Consensus 51 ~GH~a~VnC~~~l~~s~-~~a~~vsG~sD~~-----v~lW~l~~-~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSE-IVAEMVSGDSDGR-----VILWKLRD-EYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred cCCccceEEEEEccccc-ccceEEEccCCCc-----EEEEEEee-hheEEEEeecC-cceeEEEEEeeeeEEEeeccCce
Confidence 35888999999999643 3458999999975 56999863 34444555555 45556666532333 33368999
Q ss_pred EEEEEccCcee-----e------------------------------------------eeeccCCccccCeEEEEec--
Q 019258 94 LHVLSSAMQVL-----L------------------------------------------SVDENSGFHVGPISGVDLT-- 124 (343)
Q Consensus 94 v~v~~~~~~~~-----~------------------------------------------~~~~~~~~h~~~v~~~~~~-- 124 (343)
+.+|+.+..+. + .......+|..-|.+++|.
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 99999843220 0 0001123577788888887
Q ss_pred -C--CEEEEEeCCCcEEEEECCCCc--------------------eEE----------EEEcCCCccceEEEEeCC-CCE
Q 019258 125 -G--SECVSVGEDGRVNLVSVIGGG--------------------EFK----------RVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 125 -~--~~~~s~s~dg~v~~wd~~~~~--------------------~~~----------~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+ -+++|+|.|..|++|.+.-.. ... .++.+|+. .|+++.|+| .-.
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLD 281 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhh
Confidence 2 267899999999999873110 001 12236666 899999999 558
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce--eeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ--SIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~--~~~~~ 248 (343)
|++++.|+++.+|.... ..-+..-...-++.+...+.....-|+|++. .+++-+.-|..++|-...... +....
T Consensus 282 LLSASaDksmiiW~pd~---~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDE---NTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred heecccCcceEEEecCC---ccceEEEEEEeecccccccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeecccc
Confidence 99999999999998765 2222221111111222224478889999874 556778889999997333221 22222
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-------ccccceeeec
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE-------PCAINSFDID 321 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~-------~~~i~s~~~~ 321 (343)
.+|.+.|.+|.|+|.+. +|++.|.|.+=|++-......+ .++ .-.++++.+-
T Consensus 358 ----------SGH~~~V~dv~W~psGe----------flLsvs~DQTTRlFa~wg~q~~-wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 358 ----------SGHVDGVKDVDWDPSGE----------FLLSVSLDQTTRLFARWGRQQE-WHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred ----------ccccccceeeeecCCCC----------EEEEeccccceeeecccccccc-eeeecccccccccceeeehc
Confidence 68999999999999988 8999999999888654421111 232 2357777776
Q ss_pred CCCCCeeEEccCCceEEEEeCC
Q 019258 322 PQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+. ....++|.|--.+++|+-|
T Consensus 417 n~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 417 NE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cC-CceeeecccceeeeeecCc
Confidence 53 2566777766566676544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=121.10 Aligned_cols=234 Identities=18% Similarity=0.133 Sum_probs=156.2
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccC---ce----eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAM---QV----LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~---~~----~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~ 145 (343)
|.+-+++ ...+|++|+.+|.|.++.+.. .+ .-.....+.+|.++|..+.+....+++|+. |.|+-|..+..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence 4445556 678899999999999999861 10 001111225799999999999888888776 99999987431
Q ss_pred ce---EE---EEEc-----CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 146 GE---FK---RVYD-----GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 146 ~~---~~---~~~~-----~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.+ .. +... ......|.++...| .+.+++++.|+.+.-||++. ++--..+++|. +.+++
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---G~i~r~~rGHt-------DYvH~ 161 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---GRIQREYRGHT-------DYVHS 161 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC---CEEEEEEcCCc-------ceeee
Confidence 11 11 1110 11112488899898 77788888999999999999 77667788887 88999
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
+.--..... +++|++||++++||+++... ...++...+..-- ..|. ..|-+++-+. . + +.|+.
T Consensus 162 vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~l-Rp~~g~wigala~~e--d----------W-lvCGg 225 (325)
T KOG0649|consen 162 VVGRNANGQ-ILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLL-RPDWGKWIGALAVNE--D----------W-LVCGG 225 (325)
T ss_pred eeecccCcc-eeecCCCccEEEEeccccce-eEEeccccChhhc-CcccCceeEEEeccC--c----------e-EEecC
Confidence 988333333 56999999999999999544 3333222111100 1222 3455665552 2 3 45666
Q ss_pred CCeEEEEecC-CCcccccccccccceeeecCCCCCeeEEccCCceE
Q 019258 293 DGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVICSLEWESI 337 (343)
Q Consensus 293 dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i 337 (343)
.-.+.+|+.. .+...+.+-+.++.-++|.. +.++.+++...+
T Consensus 226 Gp~lslwhLrsse~t~vfpipa~v~~v~F~~---d~vl~~G~g~~v 268 (325)
T KOG0649|consen 226 GPKLSLWHLRSSESTCVFPIPARVHLVDFVD---DCVLIGGEGNHV 268 (325)
T ss_pred CCceeEEeccCCCceEEEecccceeEeeeec---ceEEEeccccce
Confidence 6778888875 44556666788899999986 567777655333
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=135.76 Aligned_cols=261 Identities=15% Similarity=0.225 Sum_probs=172.8
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCC----CccCCCCCCeeEEEcc---CCCe
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--LTP----HSQWTPPTRISSLSTS---HQSL 84 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~----~~~~~~~~~v~~v~~~---~~~~ 84 (343)
+-.+.+++-++.|+. ..+.+ ..+.|.. .+.-|++..+.. .+. +....|.+ ...-. ..+.
T Consensus 10 k~r~~e~vc~v~w~~----~eei~-~~~dDh~----~~~~~~~~~~s~~~~~~p~df~pt~~h~~---~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSS----NEEIY-FVSDDHQ----IFKWSDVSRDSVEVAKLPDDFVPTDMHLG---GRSSGGGKGSDT 77 (737)
T ss_pred ccccceeEEeecccc----cceEE-EeccCce----EEEeecccchhhhhhhCCcccCCcccccc---ccccCCCCCcce
Confidence 346778889999999 33333 3333432 244555533211 111 11111211 11111 4567
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 162 (343)
|+.+++||.+.+.+-... +.+...+|.+.+.+-.|+ |.-++++|+||.|++|.- ++ ..+........ +|+|
T Consensus 78 ~~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG-MLRStl~Q~~~-~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG-MLRSTVVQNEE-SIRC 150 (737)
T ss_pred EEEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc-hHHHHHhhcCc-eeEE
Confidence 999999999998865421 122233699999999999 889999999999999984 44 23433332333 7999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|.| ++.++.+ ..+.+.|=-+.. ...+.+.+.|+ +-|-+++|+|.. +++++|++|-+.++||...
T Consensus 151 ~~W~p~S~~vl~c-~g~h~~IKpL~~---n~k~i~WkAHD-------GiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G- 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFC-QGGHISIKPLAA---NSKIIRWRAHD-------GLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG- 217 (737)
T ss_pred EEECCCCCceEEe-cCCeEEEeeccc---ccceeEEeccC-------cEEEEeecCccc-cceeecCCceeEEeecccC-
Confidence 99999 5545444 356677766766 56677788877 889999999975 6889999999999999753
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeec
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDID 321 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~ 321 (343)
.++... ..|+-+|++++|+|+.. ++.+| -+++++ + ......|-.+.|+
T Consensus 218 -~~Lf~S----------~~~ey~ITSva~npd~~-----------~~v~S-~nt~R~-~--------~p~~GSifnlsWS 265 (737)
T KOG1524|consen 218 -ANLFTS----------AAEEYAITSVAFNPEKD-----------YLLWS-YNTARF-S--------SPRVGSIFNLSWS 265 (737)
T ss_pred -cccccC----------Chhccceeeeeeccccc-----------eeeee-eeeeee-c--------CCCccceEEEEEc
Confidence 222222 67999999999999832 33333 334441 1 1223679999999
Q ss_pred CCCCCeeEEccCCceEEE
Q 019258 322 PQNPSDVICSLEWESIAI 339 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~ 339 (343)
+ +|..++||...|-+.+
T Consensus 266 ~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 266 A-DGTQATCGTSTGQLIV 282 (737)
T ss_pred C-CCceeeccccCceEEE
Confidence 9 7899999998886543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=127.41 Aligned_cols=205 Identities=11% Similarity=0.114 Sum_probs=151.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC----CC-CccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL----TP-HSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~----~~-~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
.|...|-.++|.| -+...+|+||.|.+ +.+|.++++... ++ .....|...|.-+.|+ ..+.|+++
T Consensus 79 GHt~~vLDi~w~P---fnD~vIASgSeD~~-----v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 79 GHTAPVLDIDWCP---FNDCVIASGSEDTK-----VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CccccccccccCc---cCCceeecCCCCce-----EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 4777899999999 66788999999964 679999775322 12 2234678889999999 77899999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.|.+|.+|++.+++.+... .|...|.+++|+ |.++++.+.|..|++||.++++.+..- ..|....-..+-|.
T Consensus 151 g~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl 225 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFL 225 (472)
T ss_pred cCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEe
Confidence 99999999999977655443 299999999999 999999999999999999998643333 45554344445555
Q ss_pred CCCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 167 SPTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 167 ~~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
....++|.+. +.++.+||... ..+|+.... ... . ..|.---++|+..-+.++|=.|+.|+.|.+...
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~n--l~eP~~~~e-lDt----S-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNN--LEEPIALQE-LDT----S-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccCceeeeccccccccceeccCccc--ccCcceeEE-ecc----C-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 5333666654 88999999877 445533222 111 1 224444567777777788889999999999763
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=138.34 Aligned_cols=250 Identities=16% Similarity=0.158 Sum_probs=170.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-----ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-----QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..|...|..+.|. -...|++++.||.+.+|+++. ...+...-..++|.++|.|+.+. ++++++|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 3456678888888 778899999999999999941 11122222335899999999998 999999999999999
Q ss_pred EECCC---------CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 140 VSVIG---------GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 140 wd~~~---------~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
|++.. .......+.+|.. .++.+++++ ...|++++.||++++|+... ..+ ..|..... . +
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~---~~~-~~f~~~~e-~----g 440 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTE---ESP-CTFGEPKE-H----G 440 (577)
T ss_pred eccCCCCCcccccCcchhccceecccc-ceeeeeecccccceeeecCCceEEeeccCC---cCc-cccCCccc-c----C
Confidence 96532 1123455667776 799999999 88899999999999999876 333 33332210 1 4
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
.-.++++-.....+.++...-|.--++|+........+. .. +.....-...+..+.++|..+ ..++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~-s~---~~~~~~~~~~in~vVs~~~~~----------~~~~ 506 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE-SS---ASPGPRRYPQINKVVSHPTAD----------ITFT 506 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeecc-cc---CCCcccccCccceEEecCCCC----------eeEe
Confidence 455666655443333333333333344444322222211 00 000111235678899999887 7999
Q ss_pred EecCCeEEEEecCC--CcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 290 CSEDGILAVVEQGE--EPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 290 ~s~dg~i~~~~~~~--~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+-+|+.|++++... ...+...+...+.++++.| +|.+|++|+.|+.+.+|+.
T Consensus 507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 99999999988643 2345455567899999999 7899999999999998863
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-14 Score=136.88 Aligned_cols=261 Identities=16% Similarity=0.105 Sum_probs=169.9
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC----CCCCCCccCC-CCCCeeEEEcc-CCCeEE
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP----ASLTPHSQWT-PPTRISSLSTS-HQSLVA 86 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~----~~~~~~~~~~-~~~~v~~v~~~-~~~~l~ 86 (343)
|-..|...|.+++-++ +++.+|+|||.|++ +++|++.+- ....+...+. ..+.+.++.++ .++.+|
T Consensus 1043 hL~Ehs~~v~k~a~s~---~~~s~FvsgS~DGt-----VKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSS---EHTSLFVSGSDDGT-----VKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred hhhhccccccceeecC---CCCceEEEecCCce-----EEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 3345777888888888 67799999999986 669998431 2222333333 56789999888 889999
Q ss_pred EEcCCCcEEEEEccCc--eee--eeeccCCcc-ccCeEEEEec----CC-EEEEEeCCCcEEEEECCCCceEEEEE--cC
Q 019258 87 ASTLSGSLHVLSSAMQ--VLL--SVDENSGFH-VGPISGVDLT----GS-ECVSVGEDGRVNLVSVIGGGEFKRVY--DG 154 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~--~~~--~~~~~~~~h-~~~v~~~~~~----~~-~~~s~s~dg~v~~wd~~~~~~~~~~~--~~ 154 (343)
.++.||.|++.+++.. ... ...+....+ .+.+.++.-. .. .++.+..-+.+..||++......+.. ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999999741 111 111111222 2445554332 44 67788888999999998743222221 22
Q ss_pred CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC---eEEEEEe-c
Q 019258 155 NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK---HTCLAGG-S 229 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~~~sg~-~ 229 (343)
|+ .|++++.+| ++.++.|+..|.+.+||+|- +.++....... + .+++.+..+|..+ ..+.+|+ .
T Consensus 1195 hG--~vTSi~idp~~~WlviGts~G~l~lWDLRF---~~~i~sw~~P~--~----~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1195 HG--LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF---RVPILSWEHPA--R----APIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred cc--ceeEEEecCCceEEEEecCCceEEEEEeec---CceeecccCcc--c----CCcceEEeeccCCCCceEEEecccC
Confidence 33 599999999 88999999999999999998 77777655333 2 6788888887654 4444455 5
Q ss_pred CCcEEEEEccCCceeeeeecC-CC---Cccccc----CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 230 SGTVFAWDLRWQQQSIVLSGV-GT---GEAVTH----SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~-~~---~~~~~~----~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.|.+|++.++.....+... +. ....+. +.+.-+.....+.--++ .+++++.|+.|+.||.
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~----------~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG----------FLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc----------eeeecCCccceeeccC
Confidence 778999999887555555432 00 000000 01111111122222222 7899999999999995
Q ss_pred C
Q 019258 302 G 302 (343)
Q Consensus 302 ~ 302 (343)
.
T Consensus 1334 ~ 1334 (1431)
T KOG1240|consen 1334 T 1334 (1431)
T ss_pred C
Confidence 3
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=137.56 Aligned_cols=239 Identities=15% Similarity=0.190 Sum_probs=167.8
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCC-
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGG- 145 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~- 145 (343)
++-..+.|+ -.+.++++...-.|++||.+.++.+.-......-...|+.+.+- ...+++|+.||.|++|+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 345667777 66778888878899999998766554333222334578888875 567899999999999975321
Q ss_pred -c--eEEEEEc-------CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 146 -G--EFKRVYD-------GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 146 -~--~~~~~~~-------~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+ ++..-+. .....+ .-++|.. .+.|+++|.-..|+|||... ...+..+..... ..++++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~------t~vTaL 1214 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSS------TLVTAL 1214 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCC------ccceee
Confidence 1 1222111 111112 3457777 77888888899999999987 455555443321 457777
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCce--eeeeecCCCCcccccCCcccc--EEEEEEeecCCCCcCCCCCccceEEE
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSESE--VWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
.-+-...+++++|..||.|++||.|.... ++... ..|... |..+.+.+.+-. .|+++
T Consensus 1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~----------R~h~~~~~Iv~~slq~~G~~---------elvSg 1275 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY----------REHNDVEPIVHLSLQRQGLG---------ELVSG 1275 (1387)
T ss_pred cccccCCceEEEeecCCceEEeecccCCccccceee----------cccCCcccceeEEeecCCCc---------ceeee
Confidence 66554557899999999999999987543 34444 567777 999999987765 79999
Q ss_pred ecCCeEEEEecCCCccccccc-------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SEDGILAVVEQGEEPFELLAE-------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~~~~~~~~~~-------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|.||.|++||......+.... ...+.++.+|+. -..++||+. +.|.||+
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH-APIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-CCeeeecCc-ceEEEEe
Confidence 999999999986533222211 235999999984 488889886 8899886
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=139.79 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=159.7
Q ss_pred eeeeeCCCCCCC--CCCccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEE
Q 019258 51 LETHSISLPASL--TPHSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVD 122 (343)
Q Consensus 51 l~~w~~~~~~~~--~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~ 122 (343)
|.|+++.+.... ..+..+.....|+++.|. +...|++++.||.|++|++..+ .+.........|..+|+++.
T Consensus 605 iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slR 684 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLR 684 (1012)
T ss_pred EEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEE
Confidence 568888554221 223445556789999999 8899999999999999999722 11222223456999999999
Q ss_pred ec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 123 LT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 123 ~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
|+ .+.+++++.|.+|++||+.+.+ ....+.+|.. .|..++|+| +.++++.+.||+|++|..|. ..+++..-+
T Consensus 685 fHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs--~e~pv~Eg~ 760 (1012)
T KOG1445|consen 685 FHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRS--REQPVYEGK 760 (1012)
T ss_pred ecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCC--CCCccccCC
Confidence 99 8899999999999999999985 4444566766 799999999 89999999999999999998 455655544
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEec---CCcEEEEEccCCc-eeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGS---SGTVFAWDLRWQQ-QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~---dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.-+ ..--.|.|.-+|+.++++|.+ ++.|.+||..+.. .|+..+.++ -...+.--.+.++.
T Consensus 761 gpvg------tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 761 GPVG------TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDS 825 (1012)
T ss_pred CCcc------CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCC
Confidence 3332 334567777788877777653 5678899876644 333333211 11122223355665
Q ss_pred CCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.. .+++|-.|.+|++++.-
T Consensus 826 ~~---------lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 826 NV---------LFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ce---------EEEecCCCceEEEEEec
Confidence 55 78899999999998753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=129.01 Aligned_cols=304 Identities=12% Similarity=0.064 Sum_probs=203.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
+|.-.|+.|.|.. .+..+++||.|.. +-+|+..... .++-..-.|...|..-+|. +..-+++.+.||
T Consensus 140 ~H~GcVntV~FN~----~Gd~l~SgSDD~~-----vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQ----RGDVLASGSDDLQ-----VVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred CCCCccceeeecc----cCceeeccCccce-----EEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccC
Confidence 5778899999999 8999999999854 4466663321 2222334566667777776 667799999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCc---cceEEEEe
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGL---VGFNCVKW 165 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~---~~v~~~~~ 165 (343)
.|++=.+.......-......|.++|+-++.. ...|.+++.|+.++-.|+++......+. ..++. .....++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99988776333333223334699999999887 7789999999999999998753211111 11221 35788888
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCC---CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGS---GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+| .+.+++++.|-.+++||.|.-.. ..++.++..+.... .....|++++++.++..++ +...|-.|+++.-..
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSM 367 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCcccee-eeecccceEEecccc
Confidence 88 66899999999999999986111 11233333222111 1225699999998877765 457788899994322
Q ss_pred Cce--eeeeecCCCCcccccCCccc--cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccccc-ccc
Q 019258 241 QQQ--SIVLSGVGTGEAVTHSLSES--EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAE-PCA 314 (343)
Q Consensus 241 ~~~--~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~-~~~ 314 (343)
+.. |....-.-.-...++++|.. .|..+-|-.-... ++++||+-|.|.+|+... +...++.. ..-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---------yVvSGSDCGhIFiW~K~t~eii~~MegDr~V 438 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---------YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV 438 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccc---------eEEecCccceEEEEecchhHHHHHhhcccce
Confidence 211 11111000111122356654 4888888643334 899999999999999863 34444443 348
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
||++.-||.. ..|++.+=+.-|.||+
T Consensus 439 VNCLEpHP~~-PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 439 VNCLEPHPHL-PVLASSGIDHDVKIWT 464 (559)
T ss_pred EeccCCCCCC-chhhccCCccceeeec
Confidence 9999999965 8888888888999996
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=124.36 Aligned_cols=226 Identities=14% Similarity=0.172 Sum_probs=161.5
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~ 145 (343)
..+.|++|.|+ ...+|++++.||.++||.+.......+.. ...-.-||.+..|. |. .+++++.-..+..||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-eeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 45789999999 77899999999999999998332221111 11234578887777 66 7889999999999999886
Q ss_pred ceEEEEE--cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 146 GEFKRVY--DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 146 ~~~~~~~--~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+ ...+- .++....+.....++ ++.++..|..|.|.+....+ ++.+..++.. +.|..++|+.++..
T Consensus 291 k-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT---~eli~s~Kie--------G~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 291 K-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT---KELITSFKIE--------GVVSDFTFSSDSKE 358 (514)
T ss_pred c-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh---hhhhheeeec--------cEEeeEEEecCCcE
Confidence 4 33221 122222466667777 88999999999999999888 6777777643 67999999988876
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccE--EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV--WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
++ +.+.+|.|.+||+++......+. -++.| ..++.++++. +|++||..|.|-+|+
T Consensus 359 l~-~~~~~GeV~v~nl~~~~~~~rf~------------D~G~v~gts~~~S~ng~----------ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 359 LL-ASGGTGEVYVWNLRQNSCLHRFV------------DDGSVHGTSLCISLNGS----------YLATGSDSGIVNIYD 415 (514)
T ss_pred EE-EEcCCceEEEEecCCcceEEEEe------------ecCccceeeeeecCCCc----------eEEeccCcceEEEec
Confidence 65 55678999999999875544444 23444 3455556665 899999999999999
Q ss_pred cCCCccccccc--------ccccceeeecCCCCCeeEEcc
Q 019258 301 QGEEPFELLAE--------PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 301 ~~~~~~~~~~~--------~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+.......+. -..|+++.|++ +.+.|+-++
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS 454 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIAS 454 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhh
Confidence 65433322222 36799999998 445554333
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=115.97 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=158.8
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCC--cEEEEECCCCceEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDG--RVNLVSVIGGGEFK 149 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg--~v~~wd~~~~~~~~ 149 (343)
.++.+.|. +...|..|+.|| .++|+...... ..........|.-+-|+...++..+.+. .+++.+++... ..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~-~I 81 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT-TI 81 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH---hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc-eE
Confidence 45566677 667788888888 47787763322 1111011224555566666666666544 48899988764 44
Q ss_pred EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-
Q 019258 150 RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG- 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~- 228 (343)
.-+.... .|.++.++....++ +=. ..|.|||++. -+.+.++..... +...+.++.+++.+.++..-++
T Consensus 82 Ce~~fpt--~IL~VrmNr~RLvV-~Le-e~IyIydI~~---MklLhTI~t~~~----n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 82 CEIFFPT--SILAVRMNRKRLVV-CLE-ESIYIYDIKD---MKLLHTIETTPP----NPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred EEEecCC--ceEEEEEccceEEE-EEc-ccEEEEeccc---ceeehhhhccCC----CccceEeeccCCCCceEEecCCC
Confidence 3333444 49999998765444 433 3499999998 777777654321 1133666666665545433333
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEecC--CCc
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVEQG--EEP 305 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~~~--~~~ 305 (343)
..|.|.+||+-+ -.+.... .+|++.+-+|+|++++. .|+++|+.|+ ||++.-. ...
T Consensus 151 t~GdV~l~d~~n-l~~v~~I----------~aH~~~lAalafs~~G~----------llATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 151 TSGDVVLFDTIN-LQPVNTI----------NAHKGPLAALAFSPDGT----------LLATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred CCceEEEEEccc-ceeeeEE----------EecCCceeEEEECCCCC----------EEEEeccCceEEEEEEcCCccEe
Confidence 478999999987 5666666 68999999999999988 8999999998 4777653 444
Q ss_pred cccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 306 FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 306 ~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++... +..|+|+.|++ ++++|.|.++.++|++|+
T Consensus 210 ~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFK 246 (391)
T ss_pred eeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEE
Confidence 555544 57899999999 679999999999999997
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-12 Score=118.29 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-C-CCeeEEEc-c-CCC-eEEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-P-TRISSLST-S-HQS-LVAAS 88 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~-~~v~~v~~-~-~~~-~l~~~ 88 (343)
...+...|..+.+.+ .+..++.++.|+. +.+|+...... ....+.. . ..+..+.+ . +.. .++..
T Consensus 61 ~~~~~~~i~~~~~~~----~~~~~~~~~~d~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 61 LRGHEDSITSIAFSP----DGELLLSGSSDGT-----IKLWDLDNGEK--LIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred eeeccceEEEEEECC----CCcEEEEecCCCc-----EEEEEcCCCce--eEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 456778899999999 7888888887754 66999855430 1111111 2 35666666 5 444 44544
Q ss_pred cC-CCcEEEEEccC-ceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 89 TL-SGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 89 s~-dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
+. |+.+.+|+... ....... ..|...|..+.+. +..+++++. |+.+++|+..... ....+..|.. .+.++
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~ 204 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTL---EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTD-PVSSL 204 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEE---ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCC-ceEEE
Confidence 44 99999999985 2322222 2588899999998 667888875 9999999999863 5555555555 79999
Q ss_pred EeCC-CC-EEEEEeCCCcEEEEEccccCCCCCee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 164 KWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 164 ~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+|.| .. .+++++.|+.|++||.+. +..+. .+..+. ... -..|+|++ ..+++++.|+.+++||++.
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~---~~~~~~~~~~~~-------~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHS-------DSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCC---CcEEeeecCCCC-------cce-eEeECCCC-CEEEEecCCCcEEEeeecC
Confidence 9998 44 455558899999998876 55555 354443 222 22789987 4667899999999999987
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccc--ccccccc
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELL--AEPCAIN 316 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~--~~~~~i~ 316 (343)
........ ..|...+.++.|+|+.. .+++++.|+.+.+|+..... .... .+...+.
T Consensus 273 ~~~~~~~~----------~~~~~~v~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (466)
T COG2319 273 SSSLLRTL----------SGHSSSVLSVAFSPDGK----------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332 (466)
T ss_pred CCcEEEEE----------ecCCccEEEEEECCCCC----------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceE
Confidence 55422222 34788999999999665 56778888889999764332 1211 2223578
Q ss_pred eeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 317 SFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 317 s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
.+.+ ..++..++.+ ..++.+.+|..
T Consensus 333 ~~~~-~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 333 SLSF-SPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEEE-CCCCCEEEEeecCCCcEEeeec
Confidence 8887 4222444444 56677777653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-15 Score=119.53 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=170.8
Q ss_pred CCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCce
Q 019258 69 TPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 69 ~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
+|.+.|+++.|...++|++|..-|.|++|.+...+.....+. .|...|+.++.. ++.+.+-+.|+++.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhh--hccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 677899999999667799999999999999986655544432 477789999887 88999999999999999744110
Q ss_pred -----------------------EE-EE--E-----------cCC--------------CccceEEEEeCC---CC-EEE
Q 019258 148 -----------------------FK-RV--Y-----------DGN--------------GLVGFNCVKWAS---PT-EFV 172 (343)
Q Consensus 148 -----------------------~~-~~--~-----------~~~--------------~~~~v~~~~~~~---~~-~l~ 172 (343)
.. .. + +.. ....+.|.++.- .. .++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 00 00 0 000 001355555322 22 355
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccC---CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFG---SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+|-.+|.+.+||+.. +..+.+++..+. ....+..++.++++.+.-.. =++|+-+..+..|.+........+..
T Consensus 170 aGyEsghvv~wd~S~---~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 170 AGYESGHVVIWDLST---GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EeccCCeEEEEEccC---CceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeeccccCcccccc
Confidence 566699999999988 544444432221 00112378999999875332 24788888899998865422221110
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec--CCCcccccccccccceeeecCCCCCe
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ--GEEPFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~--~~~~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
. ...-+..|..+..-||+. .+++++.||+|+++.. ......+..+...||+++++|+ -..
T Consensus 246 e-------~~lknpGv~gvrIRpD~K----------IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd-~~l 307 (323)
T KOG0322|consen 246 E-------ITLKNPGVSGVRIRPDGK----------ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD-CEL 307 (323)
T ss_pred e-------EEecCCCccceEEccCCc----------EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC-Cch
Confidence 0 022345688999999988 7999999999998654 3444555566788999999995 489
Q ss_pred eEEccCCceEEEEe
Q 019258 328 VICSLEWESIAIVS 341 (343)
Q Consensus 328 l~~~~~~~~i~~~~ 341 (343)
+++++.|.+|.+|+
T Consensus 308 mAaaskD~rISLWk 321 (323)
T KOG0322|consen 308 MAAASKDARISLWK 321 (323)
T ss_pred hhhccCCceEEeee
Confidence 99999999999997
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-14 Score=120.11 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=181.3
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC----ccCCCCCCeeEEEccCCCeEEEEc
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH----SQWTPPTRISSLSTSHQSLVAAST 89 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~----~~~~~~~~v~~v~~~~~~~l~~~s 89 (343)
.++...+|+++.|--. +..+.|+-.+.|.. +....+.+.+....+ ...-..+.|-.++.. +..|+++-
T Consensus 51 ~~~~~~ris~l~~~~d--~~tevl~~r~~~~~-----~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~ 122 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVD--GETEVLNARSADDD-----LPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCV 122 (412)
T ss_pred ccchhhhhhhheeecC--CceeEeeccccCcc-----cccccccCCccccccccccccccccccccchhhc-CCEEEEEe
Confidence 3455567888888862 24466666655543 334555443221111 222334667777776 56788889
Q ss_pred CCCcEEEEEccCce--eeeeeccCCccccCeEEEEec---CCEEEEEeCC--CcEEEEECCCCceEEEEEcCCC------
Q 019258 90 LSGSLHVLSSAMQV--LLSVDENSGFHVGPISGVDLT---GSECVSVGED--GRVNLVSVIGGGEFKRVYDGNG------ 156 (343)
Q Consensus 90 ~dg~v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~d--g~v~~wd~~~~~~~~~~~~~~~------ 156 (343)
.+|.+.+|....+. .-...... .+ .++..+.-. ...+++||.. ..+++||+.+.+++..--.-..
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la-~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLA-TG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred cCCcEEEEeccCCccccccceeee-cC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 99999999887221 11111111 11 344444444 4556678988 8899999988643332211111
Q ss_pred -ccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 157 -LVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 157 -~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
...++++.|.+ +..|++++.-+++++||.+. ..+|+.+|...+ .+++++...|++.. +.+|..-|.
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--qRRPV~~fd~~E-------~~is~~~l~p~gn~-Iy~gn~~g~ 270 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--QRRPVAQFDFLE-------NPISSTGLTPSGNF-IYTGNTKGQ 270 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcc--cCcceeEecccc-------CcceeeeecCCCcE-EEEecccch
Confidence 12466777766 67899999999999999998 678888887665 78999999999865 578999999
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE- 311 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~- 311 (343)
+..||+|....+...+ .+..+.|.+|..||..+ ++++|+-|..+++.|... ..+++.
T Consensus 271 l~~FD~r~~kl~g~~~----------kg~tGsirsih~hp~~~----------~las~GLDRyvRIhD~kt--rkll~kv 328 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGL----------KGITGSIRSIHCHPTHP----------VLASCGLDRYVRIHDIKT--RKLLHKV 328 (412)
T ss_pred hheecccCceeecccc----------CCccCCcceEEEcCCCc----------eEEeeccceeEEEeeccc--chhhhhh
Confidence 9999999976666655 67789999999999988 899999999999998765 222332
Q ss_pred --ccccceeeecC
Q 019258 312 --PCAINSFDIDP 322 (343)
Q Consensus 312 --~~~i~s~~~~~ 322 (343)
...++.+-+.+
T Consensus 329 YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 329 YVKSRLTFILLRD 341 (412)
T ss_pred hhhccccEEEecC
Confidence 34456665544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=140.89 Aligned_cols=270 Identities=11% Similarity=0.064 Sum_probs=191.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|-..|.|+.+-. .+++++|||.|.- +++|+..+ ..|+.+ -+|.+.|+.++.+ +.-++++++.|..
T Consensus 188 gH~naVyca~fDr----tg~~Iitgsdd~l-----vKiwS~et---~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDR----TGRYIITGSDDRL-----VKIWSMET---ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred hhhhheeeeeecc----ccceEeecCccce-----eeeeeccc---hhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 3556799999988 8999999998864 46999744 334444 4689999999999 7778899999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE----EcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV----YDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~----~~~~~~~~v~~~~~~~-~ 168 (343)
|++|.+..+.++.+.. +|++.|++++|+... +.+.||++++||.+-. ++.. .......-+..+.|.. .
T Consensus 256 IrvWrl~~~~pvsvLr---ghtgavtaiafsP~~--sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLR---GHTGAVTAIAFSPRA--SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEEEecCCCchHHHHh---ccccceeeeccCccc--cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccccc
Confidence 9999999877776654 799999999998322 8899999999998721 1111 1111111355555555 6
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
..++|++.|+.-..|...+ .. ... ..+.-+....+-..+.+++-.+..+++|++..+... ..+
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~---l~-~~~------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~l 391 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQ---LA-WRS------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HNL 391 (1113)
T ss_pred cccccccCCcccccchhhH---hh-hhc------------cceEEEeccccccccceeeeeeeEeeeeecccchhh-hhh
Confidence 7899999999999998765 11 000 001111111122245567777889999999875433 323
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~i~s~~~~~~~~~ 326 (343)
.+|...++.|.+||-++. ..++++.||...+|+..+.. ...+.. +..+..-.|++ +|.
T Consensus 392 ----------~ghsd~~yvLd~Hpfn~r---------i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq-dgt 451 (1113)
T KOG0644|consen 392 ----------MGHSDEVYVLDVHPFNPR---------IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ-DGT 451 (1113)
T ss_pred ----------cccccceeeeeecCCCcH---------hhhhccCCCceEeeecccCCcceeeecccceeeccccCC-CCc
Confidence 578999999999999987 78899999999999986553 222222 34555556776 578
Q ss_pred eeEEccCCceEEEEe
Q 019258 327 DVICSLEWESIAIVS 341 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~ 341 (343)
.+++..+-+.+||+.
T Consensus 452 s~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILG 466 (1113)
T ss_pred eEecCCCCCceEEec
Confidence 888888888888875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=118.24 Aligned_cols=246 Identities=13% Similarity=0.108 Sum_probs=166.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
||...|+++.|.. +++|.+|..-+ .+.+|.+..+.. .+.-..-+...|+.+.-..++.|.+-+.|+.+.
T Consensus 12 p~~~~v~s~~fqa-----~~rL~sg~~~G-----~V~~w~lqt~r~-~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 12 PHSSSVTSVLFQA-----NERLMSGLSVG-----IVKMWVLQTERD-LPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLI 80 (323)
T ss_pred cccchheehhhcc-----chhhhcccccc-----eEEEEEeecCcc-chhhhhhccceeeceeecCCcchhhcCCCceEE
Confidence 7888888888877 44466775543 366999965322 122222344567777766668888888999999
Q ss_pred EEEccCceee---------------------------eeec-----------------------cCCccccCeEEEEec-
Q 019258 96 VLSSAMQVLL---------------------------SVDE-----------------------NSGFHVGPISGVDLT- 124 (343)
Q Consensus 96 v~~~~~~~~~---------------------------~~~~-----------------------~~~~h~~~v~~~~~~- 124 (343)
+|++....-+ .... ......+.+.+..+.
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 9987421100 0000 000112356666655
Q ss_pred --CC--EEEEEeCCCcEEEEECCCCceEEEE---------EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCC
Q 019258 125 --GS--ECVSVGEDGRVNLVSVIGGGEFKRV---------YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGS 190 (343)
Q Consensus 125 --~~--~~~s~s~dg~v~~wd~~~~~~~~~~---------~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~ 190 (343)
+. .++.|-++|.|.+||+.++.....+ +..|.. ++.++.|.+ .+.=++++.+..+..|.+.-...
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ-PVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC-cceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 33 3456779999999999886322221 123343 799999988 66778889999999998865111
Q ss_pred CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
.-++....... + -.+..+..-|++ .++|+++.||+|++|..|+ ..|+.++ +.|.+.|++++|
T Consensus 240 slq~~~e~~lk-----n-pGv~gvrIRpD~-KIlATAGWD~RiRVyswrt-l~pLAVL----------kyHsagvn~vAf 301 (323)
T KOG0322|consen 240 SLQIRKEITLK-----N-PGVSGVRIRPDG-KILATAGWDHRIRVYSWRT-LNPLAVL----------KYHSAGVNAVAF 301 (323)
T ss_pred cccccceEEec-----C-CCccceEEccCC-cEEeecccCCcEEEEEecc-CCchhhh----------hhhhcceeEEEe
Confidence 11221111111 0 337788888986 5899999999999999998 5677766 789999999999
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+|+.+ .++++|.|++|-+|+.
T Consensus 302 spd~~----------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCE----------LMAAASKDARISLWKL 322 (323)
T ss_pred CCCCc----------hhhhccCCceEEeeec
Confidence 99976 7999999999999984
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-12 Score=114.85 Aligned_cols=279 Identities=19% Similarity=0.262 Sum_probs=190.2
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCC-eEEEEcCC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQS-LVAASTLS 91 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~-~l~~~s~d 91 (343)
..|...|..+.|+| ++..+++++. |+. +++|++...... .....|...|.+++|+ ++. .+++++.|
T Consensus 152 ~~~~~~v~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 152 EGHSESVTSLAFSP----DGKLLASGSSLDGT-----IKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ecCcccEEEEEECC----CCCEEEecCCCCCc-----eEEEEcCCCceE--EeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 35778899999999 6667777764 543 779999652111 1122378899999999 555 44444899
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
+.|++|+......+.. ....|...+ -..|. +..+++++.|+.+++|++............|.. .+.++.|.| .
T Consensus 221 ~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 296 (466)
T COG2319 221 GTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDG 296 (466)
T ss_pred CcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc-cEEEEEECCCC
Confidence 9999998774333331 122465553 22555 668889999999999999875432333334433 799999999 7
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEe--cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFK--GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..+++++.|+.+++||.+. ........ .+. ..+..+.+.+.+..+...+..|+.+.+|++.... ...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 365 (466)
T COG2319 297 KLLASGSSDGTVRLWDLET---GKLLSSLTLKGHE-------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK 365 (466)
T ss_pred CEEEEeeCCCcEEEEEcCC---CceEEEeeecccC-------CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE
Confidence 7888888899999998877 44333333 332 4588898832224455444688999999998765 222
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE-EecCCeEEEEecCCCcccc-cccc-cccceeeecCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF-CSEDGILAVVEQGEEPFEL-LAEP-CAINSFDIDPQ 323 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s-~s~dg~i~~~~~~~~~~~~-~~~~-~~i~s~~~~~~ 323 (343)
.. .....+..+.+.+ . . .++. +..++.+.+|+........ .... ..+....+.+
T Consensus 366 ~~-----------~~~~~~~~~~~~~-~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 422 (466)
T COG2319 366 TL-----------EGHSNVLSVSFSP-D-G---------RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP- 422 (466)
T ss_pred Ee-----------cCCceEEEEEECC-C-C---------CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-
Confidence 22 1122288999998 6 5 5666 8999999999986543222 2223 6788888887
Q ss_pred CCCeeEEccCCceEEEEeC
Q 019258 324 NPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~~~ 342 (343)
++..++.+++++.+.+|..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEecCCCcEEEEec
Confidence 4578888888889998875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=114.88 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=167.7
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-Cc
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG-GG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-~~ 146 (343)
..+|+|.+|+ +...++++..+..|.||.....+..........|...|++++|. .+.|++|+.|..-.+|.... ++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4689999999 88889999999999999987555444444455799999999999 88999999999999999843 32
Q ss_pred --eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 147 --EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 147 --~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+...+.. +.. ..+++.|+| ++.|++|+..+.|.+|=+++ .+.... ..|- +......|.+++|||+. -+
T Consensus 90 WkptlvLlR-iNr-AAt~V~WsP~enkFAVgSgar~isVcy~E~---ENdWWV-sKhi--kkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 90 WKPTLVLLR-INR-AATCVKWSPKENKFAVGSGARLISVCYYEQ---ENDWWV-SKHI--KKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred eccceeEEE-ecc-ceeeEeecCcCceEEeccCccEEEEEEEec---ccceeh-hhhh--CCccccceeeeeccCCc-ce
Confidence 1222222 222 599999999 99999999999999998877 332211 1111 00011669999999985 57
Q ss_pred EEEEecCCcEEEEEccC-----Cce--eeeeecCCCCccccc-CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe
Q 019258 224 CLAGGSSGTVFAWDLRW-----QQQ--SIVLSGVGTGEAVTH-SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~-----~~~--~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~ 295 (343)
+++|+.|+.++++..-- ... |... ....+..+.+ ....+.|..+.|+|++. .|+-.+.|.+
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgs-k~PFG~lm~E~~~~ggwvh~v~fs~sG~----------~lawv~Hds~ 229 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS-KMPFGQLMSEASSSGGWVHGVLFSPSGN----------RLAWVGHDST 229 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCcc-CCcHHHHHHhhccCCCceeeeEeCCCCC----------EeeEecCCCc
Confidence 78999999999996421 110 0000 0000011111 13457899999999988 6999999999
Q ss_pred EEEEecCCC---cccccccccccceeeecCCCCCeeEEccCC
Q 019258 296 LAVVEQGEE---PFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 296 i~~~~~~~~---~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+.+-|.... +..+.....|..++.|-.+ ..+++++.+
T Consensus 230 v~~~da~~p~~~v~~~~~~~lP~ls~~~ise--~~vv~ag~~ 269 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVATAQLPLLSVSWISE--NSVVAAGYD 269 (361)
T ss_pred eEEeecCCCchhccchhhccCCceeeEeecC--CceeecCCC
Confidence 999887533 3344444678888888653 344444444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=118.10 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=188.9
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC------CCCCCcc-CCCCCCeeEEEcc-CCCeEEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA------SLTPHSQ-WTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~------~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
-.+.|..+.+.+ ...+.++||+.|.+ +++|.+...+ ..+.+.. -.|...|+++.|+ ++++|++|
T Consensus 12 ~~~pv~s~dfq~---n~~~~laT~G~D~~-----iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg 83 (434)
T KOG1009|consen 12 DHEPVYSVDFQK---NSLNKLATAGGDKD-----IRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG 83 (434)
T ss_pred CCCceEEEEecc---CcccceecccCccc-----eeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence 345788888888 23349999999965 5688883321 1122333 3578899999999 99999999
Q ss_pred cCCCcEEEEEcc--------C-----ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 89 TLSGSLHVLSSA--------M-----QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 89 s~dg~v~v~~~~--------~-----~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
+.+|.|.+|... . .+...+....++|...|..++|. +..+++++.|.++++||+..+ +......
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~ 162 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD 162 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc
Confidence 999999999876 1 11123333445699999999999 888999999999999999999 4777777
Q ss_pred CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCee--EEec---ccCC--------CCCcccCeEEEEEcCC
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVL--QFKG---NFGS--------QGKASGMIHSVDIHPS 219 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~---~~~~--------~~~~~~~i~~v~~~p~ 219 (343)
.|.. .+..++|.| +..+++-+.|...+.+.+..++....+. .+.. ++++ .+.-......++|.|+
T Consensus 163 dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 163 DHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 6766 899999999 8888988989877777765411111111 0000 0000 0000144667889998
Q ss_pred CCeEEEEEe----cCCc-----EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC-------
Q 019258 220 RKHTCLAGG----SSGT-----VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR------- 283 (343)
Q Consensus 220 ~~~~~~sg~----~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~------- 283 (343)
|.. +++.. ..|. .++|+-.....|...+ ..-..+...+.|+|---.+.+..+.
T Consensus 242 G~l-lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l----------p~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 242 GSL-LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL----------PSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred CcE-EEcccceeeeCCceeeceeEeeccccccCceeec----------CCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 864 44432 1222 2445433333444443 3334556677777643222111111
Q ss_pred -ccceEEEecCCeEEEEecCC-Cccccccc--ccccceeeecCCCCCeeEEccCCceEEE
Q 019258 284 -VLPAMFCSEDGILAVVEQGE-EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 284 -~~~l~s~s~dg~i~~~~~~~-~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
. .++.-.....+++++... .+.-...+ -.+|..++|++ +|..|+-++-||.-.+
T Consensus 311 yr-lvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 311 YR-LVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred cc-eEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 1 122333455788888653 33333333 47899999998 6788888887875443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-12 Score=115.54 Aligned_cols=274 Identities=11% Similarity=0.106 Sum_probs=164.7
Q ss_pred EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCcc
Q 019258 37 AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFH 114 (343)
Q Consensus 37 l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h 114 (343)
+++...|+. |.+|++......+.+..++..+....+.++ +++.|++++ .++.|.+|++.....+...... ..
T Consensus 5 y~~~~~~~~-----I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~ 78 (330)
T PRK11028 5 YIASPESQQ-----IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PL 78 (330)
T ss_pred EEEcCCCCC-----EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cC
Confidence 444455543 669999543334455666666778889998 777776654 5889999999732222222211 12
Q ss_pred ccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCce---EEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEcc
Q 019258 115 VGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLR 186 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~ 186 (343)
.+....+.++ ++.+++++ .++.|.+|++++... ......... ...++.++| ++.+++++ .++.|.+||+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 2345678887 77777665 588999999974211 122222222 467788898 55665444 47999999997
Q ss_pred ccCCCCCee-----EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC--ce-eeeeecCCCCccccc
Q 019258 187 RAGSGGPVL-----QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ--QQ-SIVLSGVGTGEAVTH 258 (343)
Q Consensus 187 ~~~~~~~~~-----~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~--~~-~~~~~~~~~~~~~~~ 258 (343)
. ...+. ......+ .....++|+|+++.++++...+++|.+||+... .. .......... .
T Consensus 157 ~---~g~l~~~~~~~~~~~~g------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~----~ 223 (330)
T PRK11028 157 D---DGHLVAQEPAEVTTVEG------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA----D 223 (330)
T ss_pred C---CCcccccCCCceecCCC------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC----c
Confidence 6 22221 1111111 335678999999877666555999999999742 11 1111100000 0
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecCC--Cccccccc---ccccceeeecCCCCCeeEEcc
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQGE--EPFELLAE---PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~~--~~~~~~~~---~~~i~s~~~~~~~~~~l~~~~ 332 (343)
..+......+.++|++. +++++ ..++.|.+|+... ...++... ......+.++| +|++|++++
T Consensus 224 ~~~~~~~~~i~~~pdg~----------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~ 292 (330)
T PRK11028 224 FSDTRWAADIHITPDGR----------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAG 292 (330)
T ss_pred CCCCccceeEEECCCCC----------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEE
Confidence 01122334688999987 56665 4578899987632 22222222 22456889998 678888877
Q ss_pred C-CceEEEEeC
Q 019258 333 E-WESIAIVSR 342 (343)
Q Consensus 333 ~-~~~i~~~~~ 342 (343)
. ++.|.+|+.
T Consensus 293 ~~~~~v~v~~~ 303 (330)
T PRK11028 293 QKSHHISVYEI 303 (330)
T ss_pred ccCCcEEEEEE
Confidence 5 678988863
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-15 Score=129.47 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=144.8
Q ss_pred CCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEc
Q 019258 111 SGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDL 185 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~ 185 (343)
..+|.+-|+++.|+ |..+++||+|-.+.+||.-..+....+--+|.. .|.+++|.| ...+++|..|..|+++|+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta-NIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA-NIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc-ceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 35799999999999 999999999999999999876533444344555 899999999 557888888999999999
Q ss_pred cccCC-------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc
Q 019258 186 RRAGS-------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH 258 (343)
Q Consensus 186 ~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (343)
..... ..+...+.-|. ..|..++..|++++.|.++++||+++-+|+|.+..-..-...+ ...++.
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht-------~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~-~~l~ny 196 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHT-------DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP-SILVNY 196 (758)
T ss_pred ccccccccccCccchhhhhhhhh-------hhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-HHHHHh
Confidence 74111 11222222222 6688999999999999999999999999999742110000000 000011
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-----cc---c-----------------cc--
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-----EL---L-----------------AE-- 311 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-----~~---~-----------------~~-- 311 (343)
...--...++..+|..+. +|+.|+.|-..+++|...... .. . ..
T Consensus 197 ~~~lielk~ltisp~rp~---------~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPY---------YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred chhhheeeeeeecCCCCc---------eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 122345688999999998 899999999888887211110 00 0 00
Q ss_pred -----ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 -----PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 -----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+..+.-+.++| +|..|+..-..+-+|+++
T Consensus 268 n~~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNP-NGTELLVSWGGEHVYLFD 301 (758)
T ss_pred ccccceeeeEEEEECC-CCcEEEEeeCCeEEEEEe
Confidence 12245567888 566777666677888774
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=124.59 Aligned_cols=254 Identities=11% Similarity=0.089 Sum_probs=176.9
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
-.|.|.|+.|.|. .++.|++|+.|..|.+||....... ..+..+|...|..-.|. ...+++++.||.|++=.+
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 3689999999999 9999999999999999999854433 33445687777666654 667999999999998877
Q ss_pred CCCceEE--EEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 143 IGGGEFK--RVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.....+. .....|.. .|..++..| ...|.+++.|+.+.-+|+|+ ..+-..+.....+. ...-..+.++.+|
T Consensus 217 ~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~---~~pa~~~~cr~~~~-~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ---DVPAEKFVCREADE-KERVGLYTIAVDP 291 (559)
T ss_pred ccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeecc---CCccceeeeeccCC-ccceeeeeEecCC
Confidence 5432332 12233444 788888888 78899999999999999999 44433332111111 0013588999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCcee-----eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQS-----IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
...+.+++|+.|..+++||.|.-... +.....+-. . ....-.|++++|+.++. .+++.-.|
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl---~-~d~~v~ITgl~Ysh~~s----------ElLaSYnD 357 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL---V-EDDPVNITGLVYSHDGS----------ELLASYND 357 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccc---c-ccCcccceeEEecCCcc----------ceeeeecc
Confidence 99889999999999999999864322 111100000 0 12234689999997766 46666777
Q ss_pred CeEEEEecCCC----cccc----------ccc---ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 294 GILAVVEQGEE----PFEL----------LAE---PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 294 g~i~~~~~~~~----~~~~----------~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
-.|++++.... +..+ +.. ...|..+.|.+....||++|+|.|.|.||+|
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 77888764311 1111 111 2458888888656699999999999999987
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=122.44 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=138.5
Q ss_pred eEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 75 SSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
..++|+ ++..|++|+.||++|||+...... ...+..|.+.|.+++|+ ++.+++.+.| ..++|+++++....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 567788 789999999999999999763322 22334699999999999 8899999999 8999999987433333
Q ss_pred EcCCCccceEEEEeCC-C---CEEEEEe--CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 152 YDGNGLVGFNCVKWAS-P---TEFVTGG--FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~---~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
........+..+.|.. + .+++.+. ..+.|+.||+..+....-+...+... .. ..|.+++.+++|. +++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~---~~--~siSsl~VS~dGk-f~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK---RF--KSISSLAVSDDGK-FLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh---cc--CcceeEEEcCCCc-EEE
Confidence 2222222455666665 2 3333333 36778888876522221111111111 01 4599999999986 568
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.|+.||.|.+++..+.+...... +.|...|+.|.|+|+.. .+++.|.|.+..+...
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~Pdsr----------~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSPDSR----------YLASVSSDNEAAVTKL 353 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcCCcC----------cccccccCCceeEEEE
Confidence 89999999999998765555544 78999999999999987 6888888888777554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-12 Score=107.79 Aligned_cols=233 Identities=13% Similarity=0.087 Sum_probs=164.0
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC--cEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG--SLHVL 97 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg--~v~v~ 97 (343)
.|+.+.|.. +...|..|+.|+ .++++.+..+. +.........|-.+-|+ ..+++..+.+. .++++
T Consensus 7 ti~~~~~Nq----d~~~lsvGs~~G------yk~~~~~~~~k--~~~~~~~~~~IvEmLFS-SSLvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 7 TINFIGFNQ----DSTLLSVGSKDG------YKIFSCSPFEK--CFSKDTEGVSIVEMLFS-SSLVAIVSIKQPRKLKVV 73 (391)
T ss_pred ceeeeeecc----ceeEEEccCCCc------eeEEecCchHH--hhcccCCCeEEEEeecc-cceeEEEecCCCceEEEE
Confidence 466666877 788899999885 45777743222 22222333356667776 55665555433 47788
Q ss_pred EccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCC--CccceEEEEeCC-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGN--GLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~t~ 174 (343)
++.+...+--.. ...+|.++..+.+.++.+=.+. |.+||+++-+ +...++.. ...++.+++.+. +.+++.=
T Consensus 74 ~~Kk~~~ICe~~----fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 74 HFKKKTTICEIF----FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EcccCceEEEEe----cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeeccCCCCceEEec
Confidence 777544442222 3348899999977777776665 9999999874 44443322 222467777666 4455543
Q ss_pred eC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-EEEEEccCCceeeeeecCC
Q 019258 175 GF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-VFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 175 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-v~iwd~~~~~~~~~~~~~~ 251 (343)
+. .|.|.+||+.. -+++..+..|. +++.+++|+|+|. ++|++++.|+ |+++.+..++....+.+.
T Consensus 148 ~s~t~GdV~l~d~~n---l~~v~~I~aH~-------~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG- 215 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTIN---LQPVNTINAHK-------GPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRG- 215 (391)
T ss_pred CCCCCceEEEEEccc---ceeeeEEEecC-------CceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCC-
Confidence 33 89999999988 78888888776 8899999999985 6799999998 789999887777776621
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.....|.+++|+|+.+ +|.+.|+.++|.+++.
T Consensus 216 --------~~~~~IySL~Fs~ds~----------~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 216 --------TYPVSIYSLSFSPDSQ----------FLAASSNTETVHIFKL 247 (391)
T ss_pred --------ceeeEEEEEEECCCCC----------eEEEecCCCeEEEEEe
Confidence 1246799999999988 6888899999999874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-12 Score=114.41 Aligned_cols=262 Identities=10% Similarity=0.067 Sum_probs=156.4
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.+.+++.......++++| ++++|..+++.. + .+..|++.++............+....+.|+ +++.|++++
T Consensus 27 ~~~~~~~~~~~~~l~~sp----d~~~lyv~~~~~--~--~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 27 LLQVVDVPGQVQPMVISP----DKRHLYVGVRPE--F--RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred eeeEEecCCCCccEEECC----CCCEEEEEECCC--C--cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence 455555556778888888 788877776532 2 3668888533222223333445566788898 777777766
Q ss_pred -CCCcEEEEEccCceee-eeeccCCccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEE----EEcCCCccce
Q 019258 90 -LSGSLHVLSSAMQVLL-SVDENSGFHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKR----VYDGNGLVGF 160 (343)
Q Consensus 90 -~dg~v~v~~~~~~~~~-~~~~~~~~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~----~~~~~~~~~v 160 (343)
.++.|.+|++.....+ ...... .+.....++.++ ++.++ +...++.|.+||+.+...+.. ..........
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 4889999999632111 111111 122345666676 66664 555779999999976322211 1111111257
Q ss_pred EEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCC---eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 161 NCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGP---VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
..+.|+| +..++++.. +++|.+||+.. .... +..+..... ..........+.++|+++.++++...++.|.+
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~--~~~~~~~~~~~~~~p~-~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKD--PHGEIECVQTLDMMPA-DFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeC--CCCCEEEEEEEecCCC-cCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 7899999 666666665 99999999974 1122 222221110 00001234468899999887766556889999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQG 302 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~ 302 (343)
|++........+.+.. .. ......+.++|++. +|+++ ..+++|.+|+.+
T Consensus 255 ~~i~~~~~~~~~~~~~-------~~-~~~p~~~~~~~dg~----------~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQ-------PT-ETQPRGFNIDHSGK----------YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEE-------ec-cccCCceEECCCCC----------EEEEEEccCCcEEEEEEc
Confidence 9996544333322100 01 12345789999988 45544 458999998754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=120.60 Aligned_cols=256 Identities=15% Similarity=0.223 Sum_probs=171.9
Q ss_pred CCCCccCCCCCCeeEEEcc-CCCe-EEEEcCCCcEEEEEccCce----------ee---------------------eee
Q 019258 62 LTPHSQWTPPTRISSLSTS-HQSL-VAASTLSGSLHVLSSAMQV----------LL---------------------SVD 108 (343)
Q Consensus 62 ~~~~~~~~~~~~v~~v~~~-~~~~-l~~~s~dg~v~v~~~~~~~----------~~---------------------~~~ 108 (343)
.+++..+.++..-+.|..+ ++.+ +++|..-..|++||+.+.. .+ .+.
T Consensus 42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence 3456678899999999999 6654 6777889999999985211 01 000
Q ss_pred ccCCccc-----cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcE
Q 019258 109 ENSGFHV-----GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGL 180 (343)
Q Consensus 109 ~~~~~h~-----~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i 180 (343)
.....|. ....++.++ ..-+++++....|.-.+++++. ...-+..... .+.++..++ .++|++|+.+|.|
T Consensus 122 ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 122 AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSG-ELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-cccccccccc-cceeeeecCccceEEecccCceE
Confidence 0011121 123455555 5566666666678888998884 4444443333 799999999 7788888889999
Q ss_pred EEEEccccCCCCCeeEEecccC---CC-CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFG---SQ-GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
..||.|. ...+..+..... +. ......|+++.|..+|- -+++|+.+|.|.|||+|. ..|+....
T Consensus 200 EfwDpR~---ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa-~~pl~~kd------- 267 (703)
T KOG2321|consen 200 EFWDPRD---KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA-SKPLLVKD------- 267 (703)
T ss_pred EEecchh---hhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc-CCceeecc-------
Confidence 9999998 343333321110 00 01114599999998864 468999999999999998 45555432
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-CcccccccccccceeeecCCCCCeeEEccCCc
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
+..+-+|..+.|.+.+.. .-+...+...+++|+... ++......-+.+|.|.+-| ++..++.+.++.
T Consensus 268 --h~~e~pi~~l~~~~~~~q---------~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p-~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 268 --HGYELPIKKLDWQDTDQQ---------NKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVP-GSGMFFTANESS 335 (703)
T ss_pred --cCCccceeeecccccCCC---------ceEEecchHHhhhcccccCCceeeccccCCcCceeeec-CCceEEEecCCC
Confidence 456778999999877442 223333445689999753 3444444456799999999 568999999999
Q ss_pred eEEEEeCC
Q 019258 336 SIAIVSRP 343 (343)
Q Consensus 336 ~i~~~~~~ 343 (343)
.|..+..|
T Consensus 336 ~m~~yyiP 343 (703)
T KOG2321|consen 336 KMHTYYIP 343 (703)
T ss_pred cceeEEcc
Confidence 99887765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=126.32 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
.+|.|.|++++|+ ++.+|++|+.|-.+.|||.-.-..+..+. .+|.+.|.++.|- ...+++|..|..|+++|+
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4799999999999 99999999999999999987444444443 4799999999997 667889999999999999
Q ss_pred CCC---------ceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE------EecccCCCC
Q 019258 143 IGG---------GEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ------FKGNFGSQG 205 (343)
Q Consensus 143 ~~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~ 205 (343)
... ......+..|.. .|..++-.| ++.|.+++.||+|+=+|+|. +..+... +.......
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~PhtfwsasEDGtirQyDiRE--ph~c~p~~~~~~~l~ny~~~l- 200 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGPHTFWSASEDGTIRQYDIRE--PHVCNPDEDCPSILVNYNPQL- 200 (758)
T ss_pred ccccccccccCccchhhhhhhhhh-hhhheecCCCCCceEEEecCCcceeeecccC--CccCCccccccHHHHHhchhh-
Confidence 751 123344445554 677777777 68999999999999999997 2221111 11111101
Q ss_pred CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 206 KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
-...|++.+|..+++|+.|+.|--.++||.|.
T Consensus 201 ---ielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 201 ---IELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred ---heeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 34789999999999999999999999999654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=124.98 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=158.9
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc--e--eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ--V--LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~--~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
..|...|..++-+ ++.+|++|+.||+|++|+..+. + ..........-...+.++... ++.++.++.||.|.+
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 3566778888887 5589999999999999998721 1 111110100123456666555 899999999999999
Q ss_pred EECCCC--ce----EEEEEcCCCccc-eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 140 VSVIGG--GE----FKRVYDGNGLVG-FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 140 wd~~~~--~~----~~~~~~~~~~~~-v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
.+++.. .. +.+....+.... +...+|.. ...++.+..-+.|..||+|+ .+....++... +.+
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~---~~~~w~lk~~~-----~hG 1196 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM---RHDAWRLKNQL-----RHG 1196 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh---hhhHHhhhcCc-----ccc
Confidence 998762 11 112222222212 33444443 33788999999999999998 55555544222 228
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC--CCcCCCCCccce
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK--SSNISSSRVLPA 287 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~~~~~~~~~~~l 287 (343)
.|++++.+|.+. .++.|+..|.+.+||+|-. .|+.... .++..++..|..+|..+ . ..
T Consensus 1197 ~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~---------~P~~~~i~~v~~~~~~~~~S---------~~ 1256 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWE---------HPARAPIRHVWLCPTYPQES---------VS 1256 (1431)
T ss_pred ceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeeccc---------CcccCCcceEEeeccCCCCc---------eE
Confidence 899999999876 5679999999999999974 4444331 45678999999998766 3 45
Q ss_pred EEEe--cCCeEEEEecCC--Cccccccc-----------------c--cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 288 MFCS--EDGILAVVEQGE--EPFELLAE-----------------P--CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 288 ~s~s--~dg~i~~~~~~~--~~~~~~~~-----------------~--~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
++++ ..+.|-+|+.-. ....+... + .+.....+.. .+..++.|+.|.+|+.|+-
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccC
Confidence 5554 456788887421 11111111 1 1122233332 3578888889999999874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-12 Score=104.14 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=152.3
Q ss_pred EEecCCCCCCCCeEEEEeecCCCC-------CCceeeeeCCCCCCCCCCccC--CCCCCeeEEEcc----CCC-eEEEEc
Q 019258 24 VRWLPPLSPLSKLAVLAIYDTDAD-------SPSLETHSISLPASLTPHSQW--TPPTRISSLSTS----HQS-LVAAST 89 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s~D~~~~-------~~~l~~w~~~~~~~~~~~~~~--~~~~~v~~v~~~----~~~-~l~~~s 89 (343)
+.|.|.+ ...+.||.|.|+-+.+ .-++-++++.+..... +..+ ...+.+..|.|+ +++ .|+.+-
T Consensus 15 ~~~C~l~-~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~ 92 (339)
T KOG0280|consen 15 VPICCLC-HTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH 92 (339)
T ss_pred CCccccc-cccceEEEeeEEecCCCCchheeccceEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeecc
Confidence 4455532 2335888898865432 2235677775432221 1122 234568888887 445 577788
Q ss_pred CCCcEEEEEccCceeeeeeccCCc---cccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE--EEcCCCccceEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGF---HVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR--VYDGNGLVGFNC 162 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~---h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~--~~~~~~~~~v~~ 162 (343)
..|.|.+|.....+.....+.... -.....+++|+ +..+++.-.+|.+.+-+.... .+.. ....|+. .+.-
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~-E~Wt 170 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEF-EAWT 170 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccce-eeee
Confidence 899999998874332222221111 11124566776 788888888999885554433 2332 4556665 6777
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 163 VKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 163 ~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
.+|+. ++.+.+|++|+.+..||+|. +.+.+.+ .+.|. ..|.+|.-+|..+..+++|+.|..|++||.|
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~--p~~~i~~n~kvH~-------~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRI--PKTFIWHNSKVHT-------SGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecC--Ccceeeecceeee-------cceEEEecCCCCCceEEEeccccceeeeehh
Confidence 88877 78899999999999999996 4544443 33333 6699999998888889999999999999999
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+-.+|+.-. .-.+.||.+.++|...
T Consensus 242 nm~kPl~~~-----------~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 242 NMGKPLFKA-----------KVGGGVWRIKHHPEIF 266 (339)
T ss_pred cccCccccC-----------ccccceEEEEecchhh
Confidence 877776543 2358999999999765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-12 Score=107.70 Aligned_cols=263 Identities=12% Similarity=0.074 Sum_probs=167.0
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCC---------------CCCCCCCCccCCCCCCeeEEEcc-
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS---------------LPASLTPHSQWTPPTRISSLSTS- 80 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~---------------~~~~~~~~~~~~~~~~v~~v~~~- 80 (343)
..+-|++|.+.. .|++|+||-.++. +.++.-. -+++...+.++..+..|+.+.|.
T Consensus 24 eadiis~vef~~----~Ge~LatGdkgGR-----Vv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 24 EADIISAVEFDH----YGERLATGDKGGR-----VVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hhcceeeEEeec----ccceEeecCCCCe-----EEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 446799999999 8999999976653 2233221 11223345566667789999999
Q ss_pred --CCCeEEEEcCCCcEEEEEccCce--e----------------e---------------eeeccCCccccCeEEEEec-
Q 019258 81 --HQSLVAASTLSGSLHVLSSAMQV--L----------------L---------------SVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 81 --~~~~l~~~s~dg~v~v~~~~~~~--~----------------~---------------~~~~~~~~h~~~v~~~~~~- 124 (343)
+...++..+.|.+|++|.+.... . + .......+|..-|++++++
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 55678888999999999985110 0 0 0011245688889999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEE--cCCCc----cceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVY--DGNGL----VGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~--~~~~~----~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
+.......+|=.|.+|.++-..+...+. .++.. .-|++..|+| .+.|+..+..|+|++-|+|+.........
T Consensus 175 D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 175 DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 6666666778889999986422222222 22221 1388999999 88999999999999999996111111111
Q ss_pred EecccCCCCCcc------cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC--cccccCCccccE---
Q 019258 197 FKGNFGSQGKAS------GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG--EAVTHSLSESEV--- 265 (343)
Q Consensus 197 ~~~~~~~~~~~~------~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~h~~~v--- 265 (343)
++....+...+. ..|..+.|+++|++++ +- +=-+|++||+.....|.....++.- ...-.......|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryil-sR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Ee-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 111100000000 4588899999998765 32 2268999999776777766632210 000000012223
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..++|+.++. .++|||..+..++++
T Consensus 333 Fec~~sg~~~----------~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 333 FECSWSGNDS----------YVMTGSYNNVFRVFN 357 (433)
T ss_pred eEEEEcCCcc----------eEecccccceEEEec
Confidence 6788887766 789999999888887
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=103.56 Aligned_cols=232 Identities=15% Similarity=0.112 Sum_probs=151.9
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccC--eEEEEecCCEEEEEe-CC------CcEEEEEC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP--ISGVDLTGSECVSVG-ED------GRVNLVSV 142 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~s~s-~d------g~v~~wd~ 142 (343)
...+++|. +..-+++|..+| .+||+.+...+..... .+.+. +..+-+..++++-.+ .. ..|.+||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~---~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ---FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc---cccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 44558898 777888888777 7999987321110010 11121 222222255555433 32 57999996
Q ss_pred CCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
...+ +...+.... .|.++.+.+.. ++.. ..+.|.+|.... ..+.+..+......+ ..++++-+-+...
T Consensus 83 ~k~~-~i~el~f~~--~I~~V~l~r~r-iVvv-l~~~I~VytF~~--n~k~l~~~et~~NPk-----GlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 83 LKER-CIIELSFNS--EIKAVKLRRDR-IVVV-LENKIYVYTFPD--NPKLLHVIETRSNPK-----GLCSLCPTSNKSL 150 (346)
T ss_pred ccCc-EEEEEEecc--ceeeEEEcCCe-EEEE-ecCeEEEEEcCC--ChhheeeeecccCCC-----ceEeecCCCCceE
Confidence 5554 333333333 59999987643 4433 578999999874 245555555333212 2445444333333
Q ss_pred EEEEEecCCcEEEEEccCCce-eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe-EEEEe
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQ-SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-LAVVE 300 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~-i~~~~ 300 (343)
+..-|..-|.|.+-|+..... +-... .+|...|.+|+.+.++. .++|+|..|+ ||+|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I----------~AH~s~Iacv~Ln~~Gt----------~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSII----------NAHDSDIACVALNLQGT----------LVATASTKGTLIRIFD 210 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEE----------EcccCceeEEEEcCCcc----------EEEEeccCcEEEEEEE
Confidence 333466789999999987544 22334 68999999999999987 8999999998 68999
Q ss_pred cCC--Cccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 301 QGE--EPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 301 ~~~--~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... ...|+... +..|++++++| +.++|++++|.|+++||.
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEE
Confidence 753 34555543 57899999999 569999999999999985
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=118.88 Aligned_cols=236 Identities=14% Similarity=0.135 Sum_probs=163.5
Q ss_pred ccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 11 QVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
++... .|.+.|++|+|+. ++++|++|+.|+. +-+|+-..+. +-...|...|.||.|. -...|+++
T Consensus 45 llqtLKgHKDtVycVAys~----dGkrFASG~aDK~-----VI~W~~klEG----~LkYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAK----DGKRFASGSADKS-----VIIWTSKLEG----ILKYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred cccccccccceEEEEEEcc----CCceeccCCCcee-----EEEecccccc----eeeeccCCeeeEeecCchHHHhhhc
Confidence 55555 4889999999999 9999999999964 4588874322 2345789999999999 45566666
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCCccceEEEEe
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNGLVGFNCVKW 165 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~~~~v~~~~~ 165 (343)
+-+ ..-+|...... + .+. .....|.+.+|+ |.+++.|-.+|+|.+-+-.... -..+. .+....+|.+++|
T Consensus 112 sLs-dFglWS~~qK~-V--~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKS-V--SKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred chh-hccccChhhhh-H--Hhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEe
Confidence 544 45678665221 1 111 123578899998 9999999999999987654432 22222 2233348999999
Q ss_pred CC------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 166 AS------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 166 ~~------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
+| ...++......++.++.+.. +.+-.-+... -.-.|+.+.|+|.++ +.|+.|+.+.+|- |
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~-------FdP~CisYf~NGEy~-LiGGsdk~L~~fT-R 251 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALN-------FDPCCISYFTNGEYI-LLGGSDKQLSLFT-R 251 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecc----eeecccccCC-------CCchhheeccCCcEE-EEccCCCceEEEe-e
Confidence 98 23577777788888887744 3332211111 236799999999876 4688999999996 3
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+ -..... .....+||.|+.+|.++ .++.|+.||+|.-++
T Consensus 252 ~G-vrLGTv----------g~~D~WIWtV~~~PNsQ----------~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 252 DG-VRLGTV----------GEQDSWIWTVQAKPNSQ----------YVVVGCQDGTIACYN 291 (1081)
T ss_pred cC-eEEeec----------cccceeEEEEEEccCCc----------eEEEEEccCeeehhh
Confidence 32 222222 22567999999999988 689999999997655
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=108.11 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=148.1
Q ss_pred ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccC
Q 019258 115 VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
..+|+|.+|+ ...++.+-....|.+|...... .....+..|+. .+++++|.| .++|++++.|+.-.+|....++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3689999999 7788888888899999887653 34455566766 899999999 8899999999999999996622
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.=+|...+..+. ...++|.|+|.+ +.||+|+.-+.|.+|-++....-..-..+ ...+...|.++.
T Consensus 89 ~WkptlvLlRiN-------rAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhi-------kkPirStv~sld 153 (361)
T KOG1523|consen 89 TWKPTLVLLRIN-------RAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHI-------KKPIRSTVTSLD 153 (361)
T ss_pred eeccceeEEEec-------cceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhh-------CCccccceeeee
Confidence 222333333332 779999999986 57899999999999988763321110000 155788999999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecC-----CCc-----------cccccc----ccccceeeecCCCCCeeE
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-----EEP-----------FELLAE----PCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-----~~~-----------~~~~~~----~~~i~s~~~~~~~~~~l~ 329 (343)
|||.+- .|+++|.|+.++++..- +++ -+++.+ +.-+..+.|+| .|..|+
T Consensus 154 WhpnnV----------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~la 222 (361)
T KOG1523|consen 154 WHPNNV----------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLA 222 (361)
T ss_pred ccCCcc----------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEee
Confidence 999876 78999999999886421 111 022322 46799999998 679999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
-.+.|..+.+.+
T Consensus 223 wv~Hds~v~~~d 234 (361)
T KOG1523|consen 223 WVGHDSTVSFVD 234 (361)
T ss_pred EecCCCceEEee
Confidence 999999888764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-14 Score=128.53 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=169.2
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
+.|...|.|+.|. .+.++++|+.|..++||...+...+. ..++|.+.|+.++++ .-.++++|.|..|++|.+..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 5688889999999 88999999999999999977544433 335799999999998 56778999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+ .+..++.+|.. .|++++|+|-. +.+.||++++||.|-...-.++...+... + ..+.++.|...+. -+
T Consensus 264 ~-~pvsvLrghtg-avtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~--~----~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 264 G-APVSVLRGHTG-AVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTE--K----DLVDSILFENNGD-RF 331 (1113)
T ss_pred C-chHHHHhcccc-ceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccc--c----cceeeeecccccc-cc
Confidence 8 57777778887 89999999932 77889999999998300001111122111 1 4466777776664 36
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
++|+.|+.-..|.+.... .+...+.=+.++.+... ..+++-.+-.+.+|+....
T Consensus 332 ~Tgs~d~ea~n~e~~~l~-----------------~~~~~lif~t~ssd~~~---------~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA-----------------WRSNLLIFVTRSSDLSS---------IVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred ccccCCcccccchhhHhh-----------------hhccceEEEeccccccc---------cceeeeeeeEeeeeecccc
Confidence 899999988888664321 12222222222222222 5677777888888987543
Q ss_pred --cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 305 --PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 305 --~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
...+......++-+++||.|.....+++-|+.+-||..
T Consensus 386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 33334445689999999999999999999999999864
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=114.67 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=125.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
.+.|+.++.||.+.+.+-. + .+.+..+.|.. .+.+-.|+| +.-|+++|.||.|++|.-. +-.-.++....
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~-rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----GMLRStl~Q~~-- 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-A-RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRS----GMLRSTVVQNE-- 145 (737)
T ss_pred cceEEEEcCCceEEEeccc-c-hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEecc----chHHHHHhhcC--
Confidence 4679999999999987633 3 35666667766 899999999 8889999999999999742 11111122111
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR 283 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~ 283 (343)
.+|.|++|.|+...++.+. .+.+.+=.+.....++.- .+|.+-|.++.|++.+.
T Consensus 146 -----~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~W-----------kAHDGiiL~~~W~~~s~-------- 199 (737)
T KOG1524|consen 146 -----ESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRW-----------RAHDGLVLSLSWSTQSN-------- 199 (737)
T ss_pred -----ceeEEEEECCCCCceEEec--CCeEEEeecccccceeEE-----------eccCcEEEEeecCcccc--------
Confidence 7799999999998887654 456777666655555554 47999999999999987
Q ss_pred ccceEEEecCCeEEEEecCC-CcccccccccccceeeecCCCCCeeE
Q 019258 284 VLPAMFCSEDGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 284 ~~~l~s~s~dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.++++++|-+.++||... ..+.-..+.-||.|++|+|+ ..+++
T Consensus 200 --lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 200 --IIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred --ceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 799999999999999754 34454555689999999995 34443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-11 Score=111.90 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=182.5
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC--CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP--HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~--~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
..|...+ .+++.+..-.+ ++-+|.++.+....+ .....|.-.+++.+++ .++.+++|..||.|.+|+
T Consensus 164 ~~I~~~~----~ge~~~i~~~~------~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 164 KSIVDNN----SGEFKGIVHMC------KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred ccEEEcC----CceEEEEEEee------eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence 3444455 55555555444 355888865332211 1223455568999999 899999999999999997
Q ss_pred ccC--c--eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 99 SAM--Q--VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 99 ~~~--~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
--. . ......+| |..+|+++.|+ |.+++|||..|.+.+|.+.+++ ++++..-.+ .|..+.++| +...
T Consensus 234 d~~~~~~~~t~t~lHW---H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs-~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHW---HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGS-PILHIVVSPDSDLY 307 (792)
T ss_pred ccccccccccceEEEe---cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCC-eeEEEEEcCCCCeE
Confidence 542 2 22233444 88999999999 9999999999999999999974 444443344 799999999 8888
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCC-CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS-QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
.....|++|.+-....-.....+..+...... +....+-.+.++++|. .+.++-.+..|.|.+||+-+......+...
T Consensus 308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~ 386 (792)
T KOG1963|consen 308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVC 386 (792)
T ss_pred EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEE
Confidence 88888999999865320001111112211100 0001155778888883 334555678888988887654332111110
Q ss_pred CC---------------------------------------------------------CcccccCCccccEEEEEEeec
Q 019258 251 GT---------------------------------------------------------GEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 251 ~~---------------------------------------------------------~~~~~~~~h~~~v~~v~~~p~ 273 (343)
+. -.+.+...|+..+...++.+.
T Consensus 387 ~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~ 466 (792)
T KOG1963|consen 387 DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNP 466 (792)
T ss_pred eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecC
Confidence 00 001112345555444444432
Q ss_pred -CCCCcCCCCCccceEEEecCCeEEEEecC-------CCccccccc-----ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 274 -TKSSNISSSRVLPAMFCSEDGILAVVEQG-------EEPFELLAE-----PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 274 -~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-------~~~~~~~~~-----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
... ..+++|.||.+++|.-. ....|.+.. ..++++..|+. +|..|++|.+ +.|.+|
T Consensus 467 ~rs~---------~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dGslla~s~~-~~Itiw 535 (792)
T KOG1963|consen 467 TRSV---------RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DGSLLAVSFD-DTITIW 535 (792)
T ss_pred cccc---------eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CCcEEEEecC-CEEEEe
Confidence 222 57899999999999752 222333332 35789999997 6788888874 588888
Q ss_pred e
Q 019258 341 S 341 (343)
Q Consensus 341 ~ 341 (343)
+
T Consensus 536 d 536 (792)
T KOG1963|consen 536 D 536 (792)
T ss_pred c
Confidence 5
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=119.18 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=184.7
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccC
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAM 101 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~ 101 (343)
..+.+.. ++++++.|+.-+- |..+|.-. ..+.+.+.....|.++.|.....+++......++|||-..
T Consensus 133 Y~~~ytr----nGrhlllgGrKGH-----lAa~Dw~t---~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G 200 (545)
T KOG1272|consen 133 YHLDYTR----NGRHLLLGGRKGH-----LAAFDWVT---KKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG 200 (545)
T ss_pred eeeeecC----CccEEEecCCccc-----eeeeeccc---ceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC
Confidence 3445555 7888888865543 44555422 4556667777789999999555555556777899998763
Q ss_pred ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC
Q 019258 102 QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY 178 (343)
Q Consensus 102 ~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~ 178 (343)
.++...+ -...|..+.|. --.|++++..|.++--|+..++.+..+.-... .+..++-+| +..+-+|...|
T Consensus 201 -tElHClk----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G--~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 201 -TELHCLK----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG--RTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -cEEeehh----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC--ccchhhcCCccceEEEcCCCc
Confidence 3343332 22477888887 44567889999999999999864444433333 578888899 77888999999
Q ss_pred cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc
Q 019258 179 GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH 258 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (343)
+|.+|...+ .+|+..+..|. ++|.+|+++|+|.+ +++.+-|..++|||+|.-.++..+.
T Consensus 274 tVSlWSP~s---kePLvKiLcH~-------g~V~siAv~~~G~Y-MaTtG~Dr~~kIWDlR~~~ql~t~~---------- 332 (545)
T KOG1272|consen 274 TVSLWSPNS---KEPLVKILCHR-------GPVSSIAVDRGGRY-MATTGLDRKVKIWDLRNFYQLHTYR---------- 332 (545)
T ss_pred eEEecCCCC---cchHHHHHhcC-------CCcceEEECCCCcE-EeecccccceeEeeeccccccceee----------
Confidence 999999988 78888877665 89999999999875 5788999999999999977666655
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-----ccccccc--ccccceeeecCCCCCeeEEc
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-----PFELLAE--PCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-----~~~~~~~--~~~i~s~~~~~~~~~~l~~~ 331 (343)
. ..+...++++.. -++++|....+.+|.-... ....+.+ ..+|..+.|.|- ..|++-
T Consensus 333 t--p~~a~~ls~Sqk------------glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~--EDvLGI 396 (545)
T KOG1272|consen 333 T--PHPASNLSLSQK------------GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY--EDVLGI 396 (545)
T ss_pred c--CCCccccccccc------------cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH--HHeeec
Confidence 2 245667888743 4678888888999964322 1112222 468899999883 667776
Q ss_pred cCCceE
Q 019258 332 LEWESI 337 (343)
Q Consensus 332 ~~~~~i 337 (343)
+..+.|
T Consensus 397 GH~~G~ 402 (545)
T KOG1272|consen 397 GHAGGI 402 (545)
T ss_pred cccCCc
Confidence 666544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-10 Score=94.55 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=151.1
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC--CC-CeeEEEccCCCe-EEEEcCC------
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP--PT-RISSLSTSHQSL-VAASTLS------ 91 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~--~~-~v~~v~~~~~~~-l~~~s~d------ 91 (343)
-.++|.. +..-|+.|..++ .++++..- .+.....++ .| .+..|-| ..++ .++|+.+
T Consensus 9 lsvs~NQ----D~ScFava~~~G------friyn~~P---~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 9 LSVSFNQ----DHSCFAVATDTG------FRIYNCDP---FKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPP 74 (346)
T ss_pred eEEEEcc----CCceEEEEecCc------eEEEecCc---hhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCC
Confidence 3489998 777888886553 67888832 111111111 12 1222223 3344 3444443
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCC-ccceEEEEeCCCCE
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG-LVGFNCVKWASPTE 170 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 170 (343)
..|.|||-....++.... -..+|.++....+.++..-. +.|.+|...+..+..+.++... -.++.+++-..+..
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 489999955444443332 34689999998777777665 4699999975333444433222 11344444333333
Q ss_pred EEE--EeCCCcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-EEEEEccCCceee
Q 019258 171 FVT--GGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-VFAWDLRWQQQSI 245 (343)
Q Consensus 171 l~t--~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-v~iwd~~~~~~~~ 245 (343)
+++ |-.-|+|.|-|+.. .+ +...+..|. ..|.|++.+-+|. ++|+++..|+ |+|||.+++....
T Consensus 150 ~LafPg~k~GqvQi~dL~~---~~~~~p~~I~AH~-------s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLAS---TKPNAPSIINAHD-------SDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred EEEcCCCccceEEEEEhhh---cCcCCceEEEccc-------CceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEee
Confidence 333 33389999999987 33 346677776 8899999999885 6799999998 8999999977766
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.+ -...+.|.+|+|+|+.. +|+.+|+.|+|.++..
T Consensus 219 E~RR---------G~d~A~iy~iaFSp~~s----------~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 219 ELRR---------GVDRADIYCIAFSPNSS----------WLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeec---------CCchheEEEEEeCCCcc----------EEEEEcCCCeEEEEEe
Confidence 6652 12457799999999987 7999999999998764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-11 Score=101.71 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=152.7
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCce
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
-.+..++|+ .-..++++..|-.|++|+-....... ... .-...|++++|. +..|+.++..| |.+|..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~-Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTK-LKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCce-ecc--hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 357778888 66778999999999999987532222 221 245689999998 67788887776 89998753111
Q ss_pred ---E--------EEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEE
Q 019258 148 ---F--------KRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHS 213 (343)
Q Consensus 148 ---~--------~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 213 (343)
+ .+++.......|+++.|++ +..+++++. |..|.|||..+ +..+.-. ++. +.+.-
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt---g~~~pL~~~gl--------gg~sl 243 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT---GQKIPLIPKGL--------GGFSL 243 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC---CCcccccccCC--------Cceee
Confidence 1 1222223334799999999 888888887 88999999988 3322111 111 56889
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCc--eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQ--QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS 291 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s 291 (343)
+.|+|++..+| +++-|+..++|...+.- .+..+ -.+.|..-+|+|.+.. .|++++
T Consensus 244 LkwSPdgd~lf-aAt~davfrlw~e~q~wt~erw~l-------------gsgrvqtacWspcGsf---------LLf~~s 300 (445)
T KOG2139|consen 244 LKWSPDGDVLF-AATCDAVFRLWQENQSWTKERWIL-------------GSGRVQTACWSPCGSF---------LLFACS 300 (445)
T ss_pred EEEcCCCCEEE-Eecccceeeeehhcccceecceec-------------cCCceeeeeecCCCCE---------EEEEEc
Confidence 99999998765 56889999999654321 12222 2458999999999997 788888
Q ss_pred cCCeEEEEecCCCccccc--------------------cc----ccccceeeecCCCCCeeEEccCC
Q 019258 292 EDGILAVVEQGEEPFELL--------------------AE----PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 292 ~dg~i~~~~~~~~~~~~~--------------------~~----~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
..-.|+-.....+..++. .. .....+++|+| .|.+|+.....
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg 366 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKG 366 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcC
Confidence 887777644322221111 00 14688999998 67888876644
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=97.76 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=167.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC--CCCeeEEEcc--CCCeEEEEcCCCcEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP--PTRISSLSTS--HQSLVAASTLSGSLH 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~--~~~v~~v~~~--~~~~l~~~s~dg~v~ 95 (343)
.+..++|+| .-.-|+.+..|. .+++++-+... .+.+++ ...|.|++|- ...-|+.|+..| |.
T Consensus 100 dlr~~aWhq----H~~~fava~ndd-----vVriy~ksst~----pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 100 DLRGVAWHQ----HIIAFAVATNDD-----VVRIYDKSSTC----PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred ceeeEeech----hhhhhhhhccCc-----EEEEeccCCCC----CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 467789999 445566666664 36788875522 222333 4579999998 556788888776 89
Q ss_pred EEEccCc----eee--------eeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEE-cCCCccc
Q 019258 96 VLSSAMQ----VLL--------SVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVY-DGNGLVG 159 (343)
Q Consensus 96 v~~~~~~----~~~--------~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~-~~~~~~~ 159 (343)
+|..... ..+ ++.+. .+| .+|++++|+ +..+++++ .|..+.+||.+++. ...+. .+.. .
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~-pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~glg--g 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQD-PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKGLG--G 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeC-CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccCCC--c
Confidence 9987621 111 11111 123 689999999 78888877 56789999999974 33333 2333 5
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
+.-+.|+| ++.|+++.-|+..++|...+ .-.......+ . +.|...+|+|.|+.++.+.+.+-.++-...
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q--~wt~erw~lg-s-------grvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQ--SWTKERWILG-S-------GRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcc--cceecceecc-C-------CceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 99999999 89999999999999996644 1111111211 1 679999999999999888776555443322
Q ss_pred cCCceeeeeec----------CCCCcccc---cCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe--------EE
Q 019258 239 RWQQQSIVLSG----------VGTGEAVT---HSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--------LA 297 (343)
Q Consensus 239 ~~~~~~~~~~~----------~~~~~~~~---~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--------i~ 297 (343)
.+++....+ .+....+. .....++.-+|+|+|.+. +|+..-..+. |.
T Consensus 311 --~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe----------yLav~fKg~~~v~~~k~~i~ 378 (445)
T KOG2139|consen 311 --DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE----------YLAVIFKGQSFVLLCKLHIS 378 (445)
T ss_pred --cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC----------EEEEEEcCCchhhhhhhhhh
Confidence 121111110 01111100 112346788999999988 5665543332 34
Q ss_pred EEecCCC-cccccc------cccccceeeecCCCCCeeEEccCCceEE
Q 019258 298 VVEQGEE-PFELLA------EPCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 298 ~~~~~~~-~~~~~~------~~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
.|+.... +.++.. ++...-+|-.+-+.+..|.-+=+.|+|.
T Consensus 379 ~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 379 RFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred hhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 4665433 334331 1233445555544555555554445443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-11 Score=110.14 Aligned_cols=251 Identities=14% Similarity=0.119 Sum_probs=166.8
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC--CCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL--PASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~--~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
..+.+++.+| .++++|+|-.|+. |.+|.-.. +....+...-=|..+|+++.|+ ++.+|++|+..|.+.
T Consensus 206 f~~t~~~~sp----n~~~~Aa~d~dGr-----I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 206 FNITCVALSP----NERYLAAGDSDGR-----ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred ccceeEEecc----ccceEEEeccCCc-----EEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence 3389999999 8899999877753 66887633 2323222223367899999999 999999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc---eEEEEEcC------CCccceEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG---EFKRVYDG------NGLVGFNCVK 164 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~------~~~~~v~~~~ 164 (343)
+|.+.+++ .++.+. -.++|..+.++ ++.......|..|.+-...+-. .+..+... ....-.+.++
T Consensus 277 ~Wq~~T~~-kqfLPR---Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 277 LWQLETGK-KQFLPR---LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred EEeecCCC-cccccc---cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE
Confidence 99998655 222322 34689999998 7788888889999988764321 01111000 0111356778
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc--CCCCC-----------------------------------
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF--GSQGK----------------------------------- 206 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~----------------------------------- 206 (343)
++| .+.++-.+..+.|.+||+-+ .+.+.++.... ...+.
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~t---d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYT---DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccc---cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 888 77788888899999998865 33222221100 00000
Q ss_pred ------------------------cc-cCeEEEEEcCCCCeEEEEEecCCcEEEEEc------cCCceeeeeecCCCCcc
Q 019258 207 ------------------------AS-GMIHSVDIHPSRKHTCLAGGSSGTVFAWDL------RWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 207 ------------------------~~-~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~------~~~~~~~~~~~~~~~~~ 255 (343)
|. ..+..+..+|.....+++++.||.+++|-+ +..........++
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~---- 505 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG---- 505 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee----
Confidence 00 223334445544446789999999999987 3322222222212
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|..++.+.+|+.++. ++++|.|++|.+||+..
T Consensus 506 ---sy~k~~i~a~~fs~dGs-----------lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 506 ---SYHKTPITALCFSQDGS-----------LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ---ccccCcccchhhcCCCc-----------EEEEecCCEEEEecCCC
Confidence 45788999999998874 89999999999999876
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-11 Score=111.03 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=133.3
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+..|.+||........+ ..|...+.+..|+ ++.++.++.+ ..|.+||+.++. ...+..... .....+|
T Consensus 183 ~~~i~i~d~dg~~~~~l----t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g--~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQFIV----NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRG--HNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCceEe----ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCC--ccCceeE
Confidence 46888998864332221 2366789999999 8888877654 369999998863 322322222 2446899
Q ss_pred CC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 166 AS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 166 ~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+| +..|+.+. .++.+.||.+.. .+..+..+..+. ..+....|+|++..+++++..+|...+|++.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~--~~~~~~~lt~~~-------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGA--NGGTPSQLTSGA-------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEEC--CCCCeEeeccCC-------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99 66676654 688777764432 123444554332 55778999999988877776788889998754333
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQ 323 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~ 323 (343)
..... .+.. ....|+|++. .++..+.++ +..|+........+.......+..|+|
T Consensus 327 ~~~~l-----------~~~~--~~~~~SpDG~----------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sP- 381 (429)
T PRK01742 327 GASLV-----------GGRG--YSAQISADGK----------TLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISP- 381 (429)
T ss_pred CeEEe-----------cCCC--CCccCCCCCC----------EEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECC-
Confidence 22222 1222 4578999987 576666655 555776443323333323346778999
Q ss_pred CCCeeEEccCCceEEEE
Q 019258 324 NPSDVICSLEWESIAIV 340 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~ 340 (343)
+|..|+.++.++.+.+|
T Consensus 382 dG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCEEEEEEcCCCceEE
Confidence 67899988877766554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-11 Score=101.43 Aligned_cols=253 Identities=13% Similarity=0.203 Sum_probs=175.3
Q ss_pred CCCCccccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe
Q 019258 7 RTPPQVHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL 84 (343)
Q Consensus 7 ~~~~~~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~ 84 (343)
.+|..++++ .+.+.|+..--.| ..+-+.+.|.|.. +++|---+..+.-+--....+.+++++.+. +...
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drt-----vrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRT-----VRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc----CCCCeEEccccce-----eeeEEeccccccCchhhhhCCCCceEeeeeccceE
Confidence 345566666 4667788888888 5667889998865 557754322222222234567889999999 8889
Q ss_pred EEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-EEcCCCccce
Q 019258 85 VAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR-VYDGNGLVGF 160 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~-~~~~~~~~~v 160 (343)
|+.|-.+|++.-+.+. ..+.+...+....|...+..+-++ .+.+++.+.|..+..--.+.+..+-. .+....
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~---- 158 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA---- 158 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC----
Confidence 9999999999998876 334445555555799999999998 78899999998776655555432211 111111
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++.+.-. ....|...+.|.+--+.. +...++.++.++. +++.+++|.|.. .++.+|.+|..|.+||+--
T Consensus 159 t~~~~d~~-~~fvGd~~gqvt~lr~~~-~~~~~i~~~~~h~-------~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 159 SALQFDAL-YAFVGDHSGQITMLKLEQ-NGCQLITTFNGHT-------GEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred CCCceeeE-EEEecccccceEEEEEee-cCCceEEEEcCcc-------cceEEEEEcCCC-cEEEeccccCceEEEeccC
Confidence 11111111 344455567776665554 1235566777776 889999999965 5778999999999999976
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
........ .+|...|..+.+-+... ++++|++||.|-+|+.+
T Consensus 229 ~~g~~~el----------~gh~~kV~~l~~~~~t~----------~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 229 RKGTAYEL----------QGHNDKVQALSYAQHTR----------QLISCGEDGGIVVWNMN 270 (404)
T ss_pred Ccceeeee----------ccchhhhhhhhhhhhhe----------eeeeccCCCeEEEEecc
Confidence 55555555 67889999998887766 79999999999998854
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=128.07 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=139.2
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|..+.=+| ...+.+||+.|+. +++|.-.......+..+.+. +.|+.+.|+ .++.+..+..||.+.+|.
T Consensus 2210 ~v~r~~sHp----~~~~Yltgs~dgs-----v~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2210 NVRRMTSHP----SDPYYLTGSQDGS-----VRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ceeeecCCC----CCceEEecCCCce-----EEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecc
Confidence 344455555 5678899999964 55777655444444555455 889999999 899999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~ 174 (343)
.. +.....+. -|....+++.|-+..+++++ .++.+.+||..-......+-..|.. +++++++.| ...|++|
T Consensus 2280 ~~---pk~~~s~q-chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS---PKPYTSWQ-CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-GATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC---Ccceeccc-cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCC-CceEEEEcCcceEEEec
Confidence 87 23333332 47788888888877777765 6788999998543111111134555 799999999 8899999
Q ss_pred eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
|.+|.|++||+|+ .+...++. . ++ .+..|++|+..|.++||++........+.
T Consensus 2355 gr~G~v~l~D~rq---rql~h~~~----------~------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQ---RQLRHTFQ----------A------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHH---HHHHHHhh----------h------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999 55444444 1 33 24578899999999999998764444443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=105.10 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=124.8
Q ss_pred CCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc------eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 70 PPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ------VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 70 ~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
...+|.++.|. ..+.|++|+.|..|++|.+... ..+........|...|+++.|+ |+.++||+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34578899998 3448999999999999998722 2344455566799999999999 889999999999999
Q ss_pred EECC--------C-----C--ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 140 VSVI--------G-----G--GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 140 wd~~--------~-----~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
|... + . ..+.+...+|.. .++.++|.+ +..+++++-|+.+++||++. +.....+..|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~-- 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHA---GQLLAILDDHE-- 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEecc---ceeEeeccccc--
Confidence 9765 2 1 123444555655 799999999 88899999999999999999 77776666655
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
..+..++|.|-.++ +++=+.|...+.+.+..
T Consensus 166 -----~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 166 -----HYVQGVAWDPLNQY-VASKSSDRHPEGFSAKL 196 (434)
T ss_pred -----cccceeecchhhhh-hhhhccCcccceeeeee
Confidence 77999999998765 46777787777776644
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=112.89 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=169.1
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
-..+.|+ ++..|+.|+.-|++..+|..+.....-. .-...|.++.|. ...++.+..-.-+.+||-..- .+.++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee----ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeeh
Confidence 4577888 8999999999999999998854422111 122467888887 777777788888999996543 34444
Q ss_pred EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..+. .+..+.|.| .-+|++++..|.++.-|+.. ++.+..+.... +.+..++-+|-. -++-.|..+
T Consensus 207 -k~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~---GklVa~~~t~~-------G~~~vm~qNP~N-aVih~Ghsn 272 (545)
T KOG1272|consen 207 -KRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVST---GKLVASIRTGA-------GRTDVMKQNPYN-AVIHLGHSN 272 (545)
T ss_pred -hhcC--chhhhcccchhheeeecccCCceEEEeech---hhhhHHHHccC-------CccchhhcCCcc-ceEEEcCCC
Confidence 3344 599999999 77788888999999999998 88877766443 778888889975 466789999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFEL 308 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~ 308 (343)
|+|.+|.... ..|+..+ .-|.++|.+|++++.+. +++|++.|..+++||... ++...
T Consensus 273 GtVSlWSP~s-kePLvKi----------LcH~g~V~siAv~~~G~----------YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 273 GTVSLWSPNS-KEPLVKI----------LCHRGPVSSIAVDRGGR----------YMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ceEEecCCCC-cchHHHH----------HhcCCCcceEEECCCCc----------EEeecccccceeEeeecccccccee
Confidence 9999999876 4444443 45999999999999988 899999999999999753 22222
Q ss_pred cccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 309 LAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 309 ~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .+.+.+.++++. ...|++|. ...+.||+
T Consensus 332 ~-tp~~a~~ls~Sq--kglLA~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 332 R-TPHPASNLSLSQ--KGLLALSY-GDHVQIWK 360 (545)
T ss_pred e-cCCCcccccccc--ccceeeec-CCeeeeeh
Confidence 2 267788899986 25666664 44677775
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-10 Score=97.98 Aligned_cols=248 Identities=15% Similarity=0.116 Sum_probs=177.8
Q ss_pred cCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeee---ccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 67 QWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVD---ENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 67 ~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
.+....+|.++.|. ....|...+.+..+..+.+.+....... .......++|.++......+++|-.+|.+.+|
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVR 130 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEE
Confidence 34555678999998 3345666557778887777643322111 11223456788887778899999999999999
Q ss_pred ECCCCc----eEEEEEcCCCccceEEEEeCC--CCEEEEEeCC--CcEEEEEccccCCCCCeeEEecccCCCC--CcccC
Q 019258 141 SVIGGG----EFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFG--YGLQWWDLRRAGSGGPVLQFKGNFGSQG--KASGM 210 (343)
Q Consensus 141 d~~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~ 210 (343)
....+. ..... ..+. .+..+.-.+ +..+++||.. ..+++||+.+ .+++.+.+......- --+-+
T Consensus 131 ~~k~~d~hss~l~~l-a~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKL-ATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred eccCCccccccceee-ecCC--ceeeeccCCCCCceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeee
Confidence 987321 22222 2233 477777777 6667778888 8999999998 566665543322110 01256
Q ss_pred eEEEEEcCC-CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 211 IHSVDIHPS-RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 211 i~~v~~~p~-~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
++.+.|-|. ..+.|++++.-+.|++||.+.++.|+... ..-+.+|.++...|.+. ++++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f----------d~~E~~is~~~l~p~gn----------~Iy~ 264 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF----------DFLENPISSTGLTPSGN----------FIYT 264 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEe----------ccccCcceeeeecCCCc----------EEEE
Confidence 788888774 14678999999999999999999998877 45688999999999988 7999
Q ss_pred EecCCeEEEEecCCCcccc---cccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 290 CSEDGILAVVEQGEEPFEL---LAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 290 ~s~dg~i~~~~~~~~~~~~---~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+-.-|.|..+|......-. ..-...|.++-.|| .+.+|++++-|.-++|+.
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHD 318 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEee
Confidence 9999999999876543221 22257899999999 458999999999888875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=102.96 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=136.5
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeee-eeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC------------
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLS-VDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG------------ 144 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~-~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~------------ 144 (343)
.+--|+.|-..|.|.+.+....+... +.+.....+..|+++.|- ...|+.+-.+|.+.++|...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 44457888888889888765321111 111111234689999998 66788888999999997521
Q ss_pred --Cce-------------EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 145 --GGE-------------FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 145 --~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
+.. ++..+..... .|...+|++ +..|++.+.||.+||||... .+.+-.++...
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt---~eLlg~mkSYF------- 332 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDT---QELLGVMKSYF------- 332 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccH---HHHHHHHHhhc-------
Confidence 000 0000111112 588889999 88999999999999999977 44443344333
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC------------
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS------------ 276 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~------------ 276 (343)
+...|++|+|+|.+ +++|++|-.|.+|.+... ..+..- ++|..+|..|+|+|....
T Consensus 333 GGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er-RVVARG----------qGHkSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER-RVVARG----------QGHKSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred cceEEEEEcCCccE-EEecCCcceEEEEEeccc-eEEEec----------cccccceeeEeecccccccccccccccccc
Confidence 67999999999975 579999999999999763 333332 789999999999952110
Q ss_pred ---------------CcCCCC-----------CccceEEEecCCeEEEEecCCC
Q 019258 277 ---------------SNISSS-----------RVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 277 ---------------~~~~~~-----------~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-++.++ -.+.+-+.+.|-.+.+||..+.
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 011111 2345788899999999997654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-10 Score=104.74 Aligned_cols=227 Identities=16% Similarity=0.092 Sum_probs=140.8
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT 124 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 124 (343)
..|++||...... .....+...+.+..|+ +++.|+..+.+ ..|++|++..++...+... .+| ...+.|+
T Consensus 184 ~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wS 256 (429)
T PRK01742 184 YEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFS 256 (429)
T ss_pred EEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeEC
Confidence 4688999865332 2223566789999999 88888877653 3699999875543332222 123 3357887
Q ss_pred --CCEEEEE-eCCCcEEEE--ECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEE
Q 019258 125 --GSECVSV-GEDGRVNLV--SVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 125 --~~~~~s~-s~dg~v~~w--d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
++.++.+ +.+|.+.+| |+.++ ...++.. +.. .+....|+| +..++.++ .++...+|++.. .+.....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~--~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGG-TPSQLTS-GAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSA--SGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCC-CeEeecc-CCC-CcCCEEECCCCCEEEEEECCCCCceEEEEEC--CCCCeEEe
Confidence 7777765 468876665 55555 3444443 332 477899999 66555554 578899998865 22322222
Q ss_pred ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 198 KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 198 ~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
.+. + ....|+|++..++++ +.+ .+.+||+.++... .+. ..+ ....+.|+|++.
T Consensus 332 -~~~-------~--~~~~~SpDG~~ia~~-~~~-~i~~~Dl~~g~~~-~lt----------~~~--~~~~~~~sPdG~-- 384 (429)
T PRK01742 332 -GGR-------G--YSAQISADGKTLVMI-NGD-NVVKQDLTSGSTE-VLS----------STF--LDESPSISPNGI-- 384 (429)
T ss_pred -cCC-------C--CCccCCCCCCEEEEE-cCC-CEEEEECCCCCeE-Eec----------CCC--CCCCceECCCCC--
Confidence 211 2 357899999876544 444 4666999875432 221 111 234678999988
Q ss_pred cCCCCCccceEEEecCCeEEEEe---cCCC-cccccccccccceeeecC
Q 019258 278 NISSSRVLPAMFCSEDGILAVVE---QGEE-PFELLAEPCAINSFDIDP 322 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~~---~~~~-~~~~~~~~~~i~s~~~~~ 322 (343)
.+++++.+|...+|. .... ...+......+...+|+|
T Consensus 385 --------~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 385 --------MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred --------EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 788888888776654 3332 333433345678888887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-11 Score=99.40 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=163.1
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce--eeeeeccCCccc------------cCeEEEEec----CCEEE
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV--LLSVDENSGFHV------------GPISGVDLT----GSECV 129 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~--~~~~~~~~~~h~------------~~v~~~~~~----~~~~~ 129 (343)
....-|.++.|. .+++|++|..+|.|.+|.-.... +.........|. .+|+.+.|. ...|+
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 344568899999 99999999999999999765211 222222222232 368888887 56888
Q ss_pred EEeCCCcEEEEECCCCc----------------------------------eEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 130 SVGEDGRVNLVSVIGGG----------------------------------EFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 130 s~s~dg~v~~wd~~~~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
....|.+|++|.+.... .+++.+...+...|.+++++.....+-..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 99999999999874311 12233333344468889988844455556
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee---eeee---c
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS---IVLS---G 249 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~---~ 249 (343)
+|-.|.+|.+..-+..-.+..++.+. +..-..-|++..|||...++|+-.++.|+|++.|+|....- ..+. .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~n--mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPAN--MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccC--HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 79999999998711112222333332 11111558999999998888888999999999999964211 0111 0
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccc--------------ccc
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLA--------------EPC 313 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~--------------~~~ 313 (343)
.+.+... ...--..|.++.|++.+. ++++-. =-+|.+||.+.+ +.+.+. ..+
T Consensus 261 dp~~rsf-fseiIsSISDvKFs~sGr----------yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 261 DPSSRSF-FSEIISSISDVKFSHSGR----------YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred CCcchhh-HHHHhhhhhceEEccCCc----------EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 0000000 011235789999998877 555532 368899997433 322222 123
Q ss_pred ccc--eeeecCCCCCeeEEccCCceEEEEe
Q 019258 314 AIN--SFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 314 ~i~--s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... .+.|++ ++.++++|+=+..++++.
T Consensus 329 IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 329 IFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hhheeEEEEcC-CcceEecccccceEEEec
Confidence 233 346777 458999999888888886
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-10 Score=97.09 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=128.8
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCee
Q 019258 119 SGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 119 ~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 195 (343)
..++++ +..+++++.||++++|+..+.........++. .|.++.|+| +..|++.+.| ..++|+..+ +.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~--eV~DL~FS~dgk~lasig~d-~~~VW~~~~---g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA--EVKDLDFSPDGKFLASIGAD-SARVWSVNT---GAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC--ccccceeCCCCcEEEEecCC-ceEEEEecc---Cchhh
Confidence 445555 78999999999999999776543444444444 599999999 7789999999 999999999 66665
Q ss_pred EEecccCCCCCcccCeEEEEEcCCC--CeE--EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSR--KHT--CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~--~~~--~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
....... . .....+.|.-+. +.+ ++.-..-+.|..||+...... .++..- . ...-...|.+++.+
T Consensus 222 ~~t~~~k-~----~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~--~---~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 222 RKTPFSK-D----EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR--K---KIKRFKSISSLAVS 290 (398)
T ss_pred hcCCccc-c----hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh--h---hhhccCcceeEEEc
Confidence 5442221 1 335556665443 222 233334556777776432221 110000 0 01223579999999
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc-c--cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL-A--EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~-~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+++. +++-++.||.|.+++........+ . +...|..+.|+|+ .++++.-+.+..+.+++
T Consensus 291 ~dGk----------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 291 DDGK----------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTK 352 (398)
T ss_pred CCCc----------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC-cCcccccccCCceeEEE
Confidence 9988 799999999999988754332222 2 2357999999995 58888877776666654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-10 Score=101.96 Aligned_cols=244 Identities=13% Similarity=0.120 Sum_probs=156.0
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEE-EEeecCCCCCCceeeeeCCC---------CC----------CCCC------
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAV-LAIYDTDADSPSLETHSISL---------PA----------SLTP------ 64 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~-t~s~D~~~~~~~l~~w~~~~---------~~----------~~~~------ 64 (343)
.+.-|.++..-+.|.-+| ++.++. ||.|- ..|+++++.. +. ....
T Consensus 44 LiQdfe~p~ast~ik~s~----DGqY~lAtG~YK-----P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSP----DGQYLLATGTYK-----PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN 114 (703)
T ss_pred HHHhcCCccccceeEecC----CCcEEEEecccC-----CceEEEEcccceeeeeecccccceeEEEeccchhhheEeec
Confidence 445566777788899999 776655 55544 4577887722 00 0000
Q ss_pred ------------CccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE
Q 019258 65 ------------HSQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC 128 (343)
Q Consensus 65 ------------~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~ 128 (343)
...+..+..-.+|+++ .-+++++|+ ...|+-+++..++-+.... ...+.++++..+ ...|
T Consensus 115 DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 115 DRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLL 190 (703)
T ss_pred CceeeehhhcCeeeeeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecCccceE
Confidence 0011122334556666 334455444 4456666666555444333 244789999999 6677
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEcC-----C----CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe
Q 019258 129 VSVGEDGRVNLVSVIGGGEFKRVYDG-----N----GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 129 ~s~s~dg~v~~wd~~~~~~~~~~~~~-----~----~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
++|+.||.|-.||.+....+..+... + ....|++++|.. +-.++.|+.+|.+.|||+|. .+|+.. +
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa---~~pl~~-k 266 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA---SKPLLV-K 266 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc---CCceee-c
Confidence 78888999999999875433332211 1 112599999998 77899999999999999999 566543 2
Q ss_pred cccCCCCCcccCeEEEEEcCCCC-eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRK-HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~-~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
.|.. .-+|..++|.+.+. ..+ ...+...++|||-.++. +.... + -...++.+++-|+..
T Consensus 267 dh~~-----e~pi~~l~~~~~~~q~~v-~S~Dk~~~kiWd~~~Gk-~~asi----------E-pt~~lND~C~~p~sG-- 326 (703)
T KOG2321|consen 267 DHGY-----ELPIKKLDWQDTDQQNKV-VSMDKRILKIWDECTGK-PMASI----------E-PTSDLNDFCFVPGSG-- 326 (703)
T ss_pred ccCC-----ccceeeecccccCCCceE-EecchHHhhhcccccCC-ceeec----------c-ccCCcCceeeecCCc--
Confidence 2221 16799999987643 344 34566789999987754 33333 1 245599999999887
Q ss_pred cCCCCCccceEEEecCCeEEEE
Q 019258 278 NISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
.++++-+++.|-.+
T Consensus 327 --------m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 327 --------MFFTANESSKMHTY 340 (703)
T ss_pred --------eEEEecCCCcceeE
Confidence 68888888776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=94.64 Aligned_cols=249 Identities=16% Similarity=0.106 Sum_probs=152.1
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCCCCC-CeeEEEcc-CCCeEEEEcCCCc
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWTPPT-RISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~-~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..+..|.|..-+ .++. ++.+-.+-. + .|.++....... ...+....... ...++.|+ .+..++++-++|.
T Consensus 70 s~~~dm~w~~~~-~~g~-~~l~~a~a~-G--~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 70 STEFDMLWRIRE-TDGD-FNLLDAHAR-G--QIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGS 144 (339)
T ss_pred cccceeeeeecc-CCcc-ceeeecccc-c--eEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCc
Confidence 346778888732 1233 233322221 2 255666643221 11122222211 35567777 6677999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceE-EEEEcCCCccceEEEEeCC--
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEF-KRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~-- 167 (343)
+.+-+...........+ +.|.-++.-..|+ .+.+.+||+|+.+..||++-++.. .+-..-|.. +|.++.-+|
T Consensus 145 ~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~ 222 (339)
T KOG0280|consen 145 ISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPK 222 (339)
T ss_pred EEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCC
Confidence 98444332222222233 4798899999888 678899999999999999943222 221223444 799998887
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee-e
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI-V 246 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~-~ 246 (343)
+..++||++|-.|++||.|+ -++|+..-... +.|..+..+|...+.++.++--.-+++-++....... .
T Consensus 223 ~~~I~TGsYDe~i~~~DtRn--m~kPl~~~~v~--------GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~ 292 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRN--MGKPLFKAKVG--------GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI 292 (339)
T ss_pred CceEEEeccccceeeeehhc--ccCccccCccc--------cceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe
Confidence 78999999999999999996 47777654322 6699999999866555555544456777765432221 1
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEE-EEec
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILA-VVEQ 301 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~-~~~~ 301 (343)
... .++.|.+-+..-.|..... .++||| .|..|+ +|-.
T Consensus 293 ~~~-------s~~~hdSl~YG~DWd~~~~----------~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 293 VLP-------SDKIHDSLCYGGDWDSKDS----------FLATCSFYDKKIRQLWLH 332 (339)
T ss_pred eee-------ccccccceeeccccccccc----------eeeeeeccccceeeeeee
Confidence 111 1256777677777743322 688886 566655 5654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-10 Score=92.79 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE--eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG--GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
|...+|.++................|.+++|+| ++.|+.. ..++.|.+||++. +++..+.. ..+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~~~---------~~~ 103 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSFGT---------QPR 103 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEeecC---------CCc
Confidence 345555553322233333322222699999999 6765443 4578999999964 66666641 558
Q ss_pred EEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 212 HSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
+.+.|+|+|+.++++|. ..|.|.+||.++... +... +...+..++|+|++. ++++
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~------------~~~~~t~~~WsPdGr----------~~~t 160 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTF------------EHSDATDVEWSPDGR----------YLAT 160 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-eecc------------ccCcEEEEEEcCCCC----------EEEE
Confidence 89999999987766553 357899999986433 3322 234578999999998 5666
Q ss_pred Eec------CCeEEEEecCC
Q 019258 290 CSE------DGILAVVEQGE 303 (343)
Q Consensus 290 ~s~------dg~i~~~~~~~ 303 (343)
++. |+.+++|+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccceeccccEEEEEecC
Confidence 653 77788898753
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-12 Score=114.05 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=174.7
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC--CCeeEEEcc---CCCeEEEEcCCCcE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP--TRISSLSTS---HQSLVAASTLSGSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~--~~v~~v~~~---~~~~l~~~s~dg~v 94 (343)
.++.+..+| .++-+|++|.-+ +-+-++... ..+..-+.|- -.|-.+.|+ ..++-++..+...-
T Consensus 26 ~~~a~si~p----~grdi~lAsr~g------l~i~dld~p--~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka 93 (1081)
T KOG0309|consen 26 GFNAVSINP----SGRDIVLASRQG------LYIIDLDDP--FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA 93 (1081)
T ss_pred cccceeecc----ccchhhhhhhcC------eEEEeccCC--CCCceeeeccCcchhcceecccCCCCceeEEecCcchh
Confidence 455566666 677777776542 445566332 2222223332 347778887 33455555566666
Q ss_pred EEEEccC--ceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 95 HVLSSAM--QVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 95 ~v~~~~~--~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.+|++.. .+.+.+.. .+|...|+.+.|+ ...+++++.|..+..||+++...+.-.+..-.. ....++|+. .
T Consensus 94 iiwnlA~ss~~aIef~l--hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~ 170 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVL--HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKD 170 (1081)
T ss_pred hhhhhhcCCccceEEEE--ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccC
Confidence 7898873 33344333 3699999999999 678999999999999999986545444433333 588999999 6
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee-
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL- 247 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~- 247 (343)
..+++.+..+.|.+||+|. .+.++..++++. ..|+.++|+......+.+.+.||+|++||..+.......
T Consensus 171 p~vlasshg~~i~vwd~r~--gs~pl~s~K~~v-------s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRK--GSTPLCSLKGHV-------SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred cchhhhccCCceEEEeccC--CCcceEEecccc-------eeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 6778788899999999999 567888888765 779999998877667789999999999998653210000
Q ss_pred ----------------------ecCCC-------------------Cccc--ccCCccccEEEEEEeecCCCCcCCCCCc
Q 019258 248 ----------------------SGVGT-------------------GEAV--THSLSESEVWEVQYDCHTKSSNISSSRV 284 (343)
Q Consensus 248 ----------------------~~~~~-------------------~~~~--~~~~h~~~v~~v~~~p~~~~~~~~~~~~ 284 (343)
...+. .... ...+|...|....|-.....-+.-.+|=
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 00000 0000 1146777777777754433223334444
Q ss_pred cceEEEecCCeEEEEecCCCcc
Q 019258 285 LPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 285 ~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
.+|++-|.|..+++|--+....
T Consensus 322 fQLVTWSkD~~lrlWpI~~~i~ 343 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQIQ 343 (1081)
T ss_pred eeEEEeecCCceEeeeccHHHH
Confidence 5899999999999998655443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=110.46 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=132.8
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCee---EE--Ecc-CCCeEEEEcCCCcEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRIS---SL--STS-HQSLVAASTLSGSLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~---~v--~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~ 106 (343)
.+..++.+..++ ++.+|+..... .+...++..... ++ -++ ++-++++|+.-+.|.+|+....+...
T Consensus 98 e~k~i~l~~~~n-----s~~i~d~~~~~---~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 98 ENKKIALVTSRN-----SLLIRDSKNSS---VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred hcceEEEEEcCc-----eEEEEecccCc---eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 445566665553 47788774421 122334433322 11 122 55678999999999999987222111
Q ss_pred eeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEE
Q 019258 107 VDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd 184 (343)
...+|.+.|.++.++ +.+++++|+|.++++|++++.+......-+|.. .+..+.+++. .++|++.|-+.++|+
T Consensus 170 ---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n-~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 170 ---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN-RIITVGEDCTCRVWG 244 (967)
T ss_pred ---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc-eeEEEEeccc-eeEEeccceEEEEEe
Confidence 335799999999997 999999999999999999997544434345555 7999999987 999999999999996
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
... ..+..+..|.+ ..+..++.++.. .+.++++.||.+++||+..
T Consensus 245 ~~~----~~l~~y~~h~g------~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNG----TQLEVYDEHSG------KGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc----ceehhhhhhhh------cceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence 643 55556666654 569999998864 5778999999999999854
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-10 Score=106.31 Aligned_cols=182 Identities=9% Similarity=0.047 Sum_probs=138.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE---eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK---WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
...++.+..+..+.+||..... +.......+.+...+.. +++ .-++++|+.-+.|.+|+... .++...+.+|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~---dn~p~~l~GH 174 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE---DNKPIRLKGH 174 (967)
T ss_pred cceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---cCCcceeccc
Confidence 7788888889999999998874 33333333332333322 233 45688888899999999986 3444467777
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
+ +.|.++.++-+|+. +++.++|.++++|++.+.+...... -+|.+.||++.|+|.
T Consensus 175 e-------G~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~~~~----------fgHsaRvw~~~~~~n------- 229 (967)
T KOG0974|consen 175 E-------GSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLGCTG----------FGHSARVWACCFLPN------- 229 (967)
T ss_pred C-------CceEEEEEccCCcE-EEEEecCcceeeeecccccccCccc----------ccccceeEEEEeccc-------
Confidence 6 88999999999875 5799999999999998876655222 469999999999986
Q ss_pred CCCccceEEEecCCeEEEEecCCCccccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.++++++|-++++|.......+.+.+ ..-|.+++++++ --.++++++|+++.+|.
T Consensus 230 -----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhh
Confidence 48999999999999776555555555 367999999984 48899999999998764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-09 Score=95.36 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=142.0
Q ss_pred CCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEe
Q 019258 48 SPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL 123 (343)
Q Consensus 48 ~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~ 123 (343)
...|+++|...... .....+...+.+..|+ +++.|+..+. +..+.+|++..++...+... .+.+..+.|
T Consensus 178 ~~~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~----~~~~~~~~~ 250 (429)
T PRK03629 178 PYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRHNGAPAF 250 (429)
T ss_pred ceeEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC----CCCcCCeEE
Confidence 34688998855322 1123455678999999 7777775542 45788888875543332221 223445778
Q ss_pred c--CCEEEEE-eCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeE
Q 019258 124 T--GSECVSV-GEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 124 ~--~~~~~s~-s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~ 196 (343)
+ ++.++.. +.+| .|.+||+.++. ..++..... .+....|+| ++.++.++. ++...+|.+.. .+.....
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~--~~g~~~~ 325 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI--NGGAPQR 325 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCC--CcCceEECCCCCEEEEEeCCCCCceEEEEEC--CCCCeEE
Confidence 8 7777644 4455 48889998874 555544333 477889999 666766665 45556664432 1233344
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... .......|+|++..+++++..++ .|.+||+.++. ...+. ..+ ......|+|++
T Consensus 326 lt~~~-------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt----------~~~--~~~~p~~SpDG 385 (429)
T PRK03629 326 ITWEG-------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLT----------DTF--LDETPSIAPNG 385 (429)
T ss_pred eecCC-------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeC----------CCC--CCCCceECCCC
Confidence 43221 33567889999988766665544 48888987653 22222 111 23367899998
Q ss_pred CCCcCCCCCccceEEEecCCe---EEEEecCCCc-ccccccccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGI---LAVVEQGEEP-FELLAEPCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~---i~~~~~~~~~-~~~~~~~~~i~s~~~~~ 322 (343)
. .++.++.++. |++++..... ..+...+..+...+|+|
T Consensus 386 ~----------~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 386 T----------MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C----------EEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 8 6777777764 6777765433 33333355677777776
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-10 Score=90.46 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=88.1
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
+...+|-++. ...++..+..... ++|.+++|+|++..++++ |..++.|.+||++ ..+....
T Consensus 37 ~~~~l~~~~~--~~~~~~~i~l~~~------~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~-------- 98 (194)
T PF08662_consen 37 GEFELFYLNE--KNIPVESIELKKE------GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF-------- 98 (194)
T ss_pred eeEEEEEEec--CCCccceeeccCC------CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee--------
Confidence 4567777765 3345544443221 579999999999776443 5567899999997 2222222
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEEec---CCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccC
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE---DGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~---dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
+...++.|.|+|++. +++.++. .|.|.+||......-...+...+..++|+| +|++++++..
T Consensus 99 ----~~~~~n~i~wsP~G~----------~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP-dGr~~~ta~t 163 (194)
T PF08662_consen 99 ----GTQPRNTISWSPDGR----------FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP-DGRYLATATT 163 (194)
T ss_pred ----cCCCceEEEECCCCC----------EEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC-CCCEEEEEEe
Confidence 356788999999998 6776654 467999998743322222345578999999 6799988875
Q ss_pred C------ceEEEEe
Q 019258 334 W------ESIAIVS 341 (343)
Q Consensus 334 ~------~~i~~~~ 341 (343)
. ..+.||+
T Consensus 164 ~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 164 SPRLRVDNGFKIWS 177 (194)
T ss_pred ccceeccccEEEEE
Confidence 3 4555554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-11 Score=104.01 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc--------------eeeeeeccC---------C--ccccCeEEEEec
Q 019258 72 TRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ--------------VLLSVDENS---------G--FHVGPISGVDLT 124 (343)
Q Consensus 72 ~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~--------------~~~~~~~~~---------~--~h~~~v~~~~~~ 124 (343)
..|++++|. ++.+++++-.+|.+++|+.... ..+.+.... + .-.+.|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 579999998 7788889999999999976410 011111110 0 113467888887
Q ss_pred --CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 125 --GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 125 --~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
|+++++.|.||.++++|..+.. ++.+...--. ...|++|+| +.++++|+.|.-|.+|.+.. .+.+..-.+|.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---rRVVARGqGHk 374 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---RRVVARGQGHK 374 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHH-HHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEecc---ceEEEeccccc
Confidence 9999999999999999998863 4433322222 699999999 99999999999999999987 66666666654
Q ss_pred CCCCCcccCeEEEEEcCC-----------------------------------------------CCeEEEEEecCCcEE
Q 019258 202 GSQGKASGMIHSVDIHPS-----------------------------------------------RKHTCLAGGSSGTVF 234 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~-----------------------------------------------~~~~~~sg~~dg~v~ 234 (343)
.+|..|+|+|- -.+.|.+.+.|-.+.
T Consensus 375 -------SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlc 447 (636)
T KOG2394|consen 375 -------SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLC 447 (636)
T ss_pred -------cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEE
Confidence 88999999830 124567788999999
Q ss_pred EEEccC
Q 019258 235 AWDLRW 240 (343)
Q Consensus 235 iwd~~~ 240 (343)
+||+..
T Consensus 448 LWDlte 453 (636)
T KOG2394|consen 448 LWDLTE 453 (636)
T ss_pred EEecch
Confidence 999854
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-09 Score=95.59 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=136.4
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++||..... +.....+...+.+..|+ +++.|+..+. ...|.+|++..++...+.. +.+...+..|+
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRGINGAPSFSP 257 (433)
T ss_pred EEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCCCccCceECC
Confidence 58889885422 12223456678999999 8888877764 3468899987554333221 22334567887
Q ss_pred -CCEEE-EEeCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCc--EEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYG--LQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~--i~iwd~~~~~~~~~~~~ 196 (343)
++.++ +.+.+| .|.+||+.++. ...+.. +.. .....+|+| +..++.++. ++. |.++|+.. + ....
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~-~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~---g-~~~~ 330 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTN-HFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG---G-SAER 330 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC-eEECcc-CCC-CccceEECCCCCEEEEEECCCCCceEEEEECCC---C-CeEE
Confidence 66664 556666 58999998874 444433 222 346789999 666766654 555 55556544 2 2333
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... ......+|+|++..++++...++ .|.+||+..+. +..+. +........|+|++
T Consensus 331 lt~~g-------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~~Lt------------~~~~~~~p~~spdG 390 (433)
T PRK04922 331 LTFQG-------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VRTLT------------PGSLDESPSFAPNG 390 (433)
T ss_pred eecCC-------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-eEECC------------CCCCCCCceECCCC
Confidence 33221 33457899999988766544443 59999987643 22222 12234467899998
Q ss_pred CCCcCCCCCccceEEEecC---CeEEEEecCCCccccccc-ccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSED---GILAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
. .++..+.+ +.|++++........+.. ...+...+|+|
T Consensus 391 ~----------~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 391 S----------MVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C----------EEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 8 45555543 357778775443333332 34455566665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=96.70 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=117.5
Q ss_pred cccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEcc
Q 019258 114 HVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLR 186 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~ 186 (343)
+...+.+..|+ ++.++..+.+ ..|.+||+.++. ...+..... ......|+| ++.++ +.+.++...+|.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRVVANFKG--SNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEEeecCCC--CccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 56678899998 7788776643 359999998874 344432332 366889999 65665 56778887777664
Q ss_pred ccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC-ceeeeeecCCCCcccccCCccccE
Q 019258 187 RAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-QQSIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v 265 (343)
. .+..+..+..+. +......|+|+|+.+++++..+|...+|.+... .....+. .+....
T Consensus 271 ~--~~~~~~~lt~~~-------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-----------~~g~~~ 330 (427)
T PRK02889 271 A--DGSGLRRLTQSS-------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-----------FTGSYN 330 (427)
T ss_pred C--CCCCcEECCCCC-------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-----------cCCCCc
Confidence 4 233444444322 335567899999888766555677777765422 1221221 112223
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCC---eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCc
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
....|+|++. .++..+.++ .|++|+........+.......+..|+| +|+.|+.+++.+
T Consensus 331 ~~~~~SpDG~----------~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~sp-dg~~l~~~~~~~ 392 (427)
T PRK02889 331 TSPRISPDGK----------LLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAP-NGRYILYATQQG 392 (427)
T ss_pred CceEECCCCC----------EEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECC-CCCEEEEEEecC
Confidence 4678999988 566665554 5889986543333333333456788999 568877777554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=93.49 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=138.9
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++++..... ......+...+.+..|+ +++.|+..+. +..|.+|++..++...+. .+.+.+....|+
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~----~~~g~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG----NFPGMTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee----cCCCcccCcEECC
Confidence 57788874422 12223566789999999 7787777653 468999999755433322 244566778888
Q ss_pred -CCEEE-EEeCCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC--cEEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~ 196 (343)
|+.++ +.+.++. |.+||+.++. ..++.. +.. ......|+| +..++..+. ++ .|.++|+.. .....
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~-~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g----~~~~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTD-SPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG----SNPRR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc-eEEccC-CCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCC----CCeEE
Confidence 76664 6666665 6677888773 555433 222 356789999 666776664 33 577778654 33444
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... +.+....|+|++..++++....+ .|.+||+.... ...+. ....+..+.|+|++
T Consensus 329 lt~~~-------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt------------~~~~~~~p~~spDG 388 (435)
T PRK05137 329 ISFGG-------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT------------SGFLVEGPTWAPNG 388 (435)
T ss_pred eecCC-------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc------------CCCCCCCCeECCCC
Confidence 44222 44667889999988766554333 57888875432 22221 12235678999998
Q ss_pred CCCcCCCCCccceEEEec-C-----CeEEEEecCCCcccccccccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSE-D-----GILAVVEQGEEPFELLAEPCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~-d-----g~i~~~~~~~~~~~~~~~~~~i~s~~~~~ 322 (343)
. .++..+. . ..|++++........+..+..+..-+|+|
T Consensus 389 ~----------~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 389 R----------VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSP 432 (435)
T ss_pred C----------EEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCC
Confidence 8 4444333 2 25777776543333343444455666665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=94.08 Aligned_cols=208 Identities=13% Similarity=0.105 Sum_probs=129.1
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC---CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE---DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .|...+.+..|+ ++.++..+. +..|.+||+.++. ...+..... .+...+|+|
T Consensus 183 ~l~~~d~dg~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~~l~~~~g--~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-RELVGNFPG--MTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EEEeecCCC--cccCcEECC
Confidence 6667776532222222 366789999998 778877653 4689999998874 444432222 467889999
Q ss_pred -CCEEE-EEeCCCc--EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCC
Q 019258 168 -PTEFV-TGGFGYG--LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~ 241 (343)
+..++ +.+.++. |.+||+.. ..+..+..+. +......|+|++..++++...+| .|+++|+...
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~----~~~~~Lt~~~-------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRS----GTTTRLTDSP-------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCC----CceEEccCCC-------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 65554 5555655 66668766 3344444332 44667899999987766554444 5778887653
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-C--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED-G--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d-g--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
....+. .+...+....|+|++. .++..+.+ + .|++|+.......++.....+.+.
T Consensus 325 -~~~~lt-----------~~~~~~~~~~~SpdG~----------~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p 382 (435)
T PRK05137 325 -NPRRIS-----------FGGGRYSTPVWSPRGD----------LIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGP 382 (435)
T ss_pred -CeEEee-----------cCCCcccCeEECCCCC----------EEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCC
Confidence 222322 1234566788999988 56555443 2 578888644333444444457788
Q ss_pred eecCCCCCeeEEccCC------ceEEEEe
Q 019258 319 DIDPQNPSDVICSLEW------ESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~------~~i~~~~ 341 (343)
.|+| +|+.|+..++. ..+++++
T Consensus 383 ~~sp-DG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 383 TWAP-NGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred eECC-CCCEEEEEEccCCCCCcceEEEEE
Confidence 9999 56887775543 2466654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=91.17 Aligned_cols=231 Identities=10% Similarity=0.012 Sum_probs=145.1
Q ss_pred CCCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---------------CCCCCCCccCCCC
Q 019258 7 RTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---------------PASLTPHSQWTPP 71 (343)
Q Consensus 7 ~~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---------------~~~~~~~~~~~~~ 71 (343)
.+.-.+......++|++|.+-. .+.+++||-..+ ++.++.-+. +.+...+.++..+
T Consensus 15 gdk~d~~~~tead~ItaVefd~----tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleie 85 (460)
T COG5170 15 GDKLDLNSSTEADKITAVEFDE----TGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIE 85 (460)
T ss_pred cchhhcccccccceeeEEEecc----ccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHH
Confidence 3344455555668899999998 788999884333 233443311 1122234445556
Q ss_pred CCeeEEEcc---CCCeEEEEcCCCcEEEEEccCc------------------e-e------eee--------------ec
Q 019258 72 TRISSLSTS---HQSLVAASTLSGSLHVLSSAMQ------------------V-L------LSV--------------DE 109 (343)
Q Consensus 72 ~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~------------------~-~------~~~--------------~~ 109 (343)
..|+.+.|. .-..++..+.|.+|++|.+... . + +.. .+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 679999998 3356888889999999988521 0 0 000 00
Q ss_pred -cCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE--cCCCc----cceEEEEeCC--CCEEEEEeCCCc
Q 019258 110 -NSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY--DGNGL----VGFNCVKWAS--PTEFVTGGFGYG 179 (343)
Q Consensus 110 -~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~--~~~~~----~~v~~~~~~~--~~~l~t~~~d~~ 179 (343)
...+|..-+++++++ ....+..+.|=.|.+|+++-......+. .++.. .-|++..|+| .+.+...+..|.
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 124566778899998 6777777888899999986532222222 23321 1378899999 888999999999
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCC------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGK------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
|++-|+|+.........+....-++.. --..|..+.|+|+|++++ + -+=-+|++||.+....|+...
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-s-RdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-S-RDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-E-eccceEEEEecccccCCceee
Confidence 999999971111111111110000000 004588899999998764 3 333589999999877777655
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=113.56 Aligned_cols=205 Identities=13% Similarity=0.158 Sum_probs=144.2
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
...+.++|+.||.|++|....++.+...+.. ....|+.+.|+ |+.+..+..||.+.+|.+.. ++......|..
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~qchnk- 2293 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSWQCHNK- 2293 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeecccCC--cceeccccCCc-
Confidence 5567899999999999999877777665543 33789999998 99999999999999999973 35556666766
Q ss_pred ceEEEEeCCCCEEEEEeC---CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 159 GFNCVKWASPTEFVTGGF---GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
...++.|.. ..+++++. ++.+.+||.-. ++....--+.|. +.++++++-|.. .++++|+.+|.|++
T Consensus 2294 ~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~--~~~~s~v~~~H~-------~gaT~l~~~P~~-qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2294 ALSDFRFIG-SLLATAGRSSDNRNVCLWDTLL--PPMNSLVHTCHD-------GGATVLAYAPKH-QLLISGGRKGEVCL 2362 (2439)
T ss_pred cccceeeee-hhhhccccCCCCCcccchhccc--CcccceeeeecC-------CCceEEEEcCcc-eEEEecCCcCcEEE
Confidence 677888776 55666654 88999999865 221111113333 669999999985 57789999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccccccc-
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELLAEP- 312 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~~~~- 312 (343)
||+|+.+....+. . ++ . .. ++++++..|.|++|+...-. ..+-.++
T Consensus 2363 ~D~rqrql~h~~~----------------~----~~-~-~~---------~f~~~ss~g~ikIw~~s~~~ll~~~p~e~a 2411 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQ----------------A----LD-T-RE---------YFVTGSSEGNIKIWRLSEFGLLHTFPSEHA 2411 (2439)
T ss_pred eehHHHHHHHHhh----------------h----hh-h-hh---------eeeccCcccceEEEEccccchhhcCchhhc
Confidence 9999843322222 2 34 2 33 79999999999999975431 1111111
Q ss_pred -c-----ccceeeecCCCCCeeEEccC
Q 019258 313 -C-----AINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 313 -~-----~i~s~~~~~~~~~~l~~~~~ 333 (343)
. .=+.+.+.. .+....||.|
T Consensus 2412 k~gfFr~~g~Q~~v~~-~nrifsCgad 2437 (2439)
T KOG1064|consen 2412 KQGFFRNIGMQINVGQ-CNRIFSCGAD 2437 (2439)
T ss_pred ccchhhhcCceeeecc-CceEEEecCC
Confidence 0 015556665 4477777764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-08 Score=92.75 Aligned_cols=231 Identities=16% Similarity=0.142 Sum_probs=135.4
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|+++|...... .....+...+.+.+|+ +++.|+..+.+ ..|.+|++..++...+.. ..+...+..|+
T Consensus 177 ~L~~~D~dG~~~---~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~~g~~~~~~~SP 249 (427)
T PRK02889 177 QLQISDADGQNA---QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----FKGSNSAPAWSP 249 (427)
T ss_pred EEEEECCCCCCc---eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence 577777743221 2223566788899999 78888776642 358999997554433322 22345677888
Q ss_pred -CCEEE-EEeCCCcEEEEEC--CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEe
Q 019258 125 -GSECV-SVGEDGRVNLVSV--IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 125 -~~~~~-s~s~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
++.++ +.+.+|...+|.+ .++ ...++.. +.. ......|+| +..++..+. ++...+|.+.. .+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~-~~~-~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~--~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQ-SSG-IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA--SGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC-CcEECCC-CCC-CCcCeEEcCCCCEEEEEecCCCCcEEEEEEC--CCCceEEEe
Confidence 66665 5678888777755 444 2444332 222 356678999 666665554 56777887654 223333333
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
... ......+|+|+|..++.+...++ .|.+||+..++. ..+. . ........|+|++.
T Consensus 325 ~~g-------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-~~lt----------~--~~~~~~p~~spdg~- 383 (427)
T PRK02889 325 FTG-------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-TALT----------D--TTRDESPSFAPNGR- 383 (427)
T ss_pred cCC-------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-EEcc----------C--CCCccCceECCCCC-
Confidence 211 22446789999988765544443 699999976542 2222 1 12235789999988
Q ss_pred CcCCCCCccceEEEecCC---eEEEEecCCCccccccc-ccccceeeecC
Q 019258 277 SNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
.|+.++.++ .+++.+........+.. ...+...+|+|
T Consensus 384 ---------~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 384 ---------YILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ---------EEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 455555444 25555554333333332 34566667766
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=93.73 Aligned_cols=208 Identities=15% Similarity=0.106 Sum_probs=125.5
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.+||........+. .|...+.+..|+ ++.++.++.+ ..|.+||+.++. ...+..... ...+.+|+|
T Consensus 185 ~l~i~D~~g~~~~~lt----~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~~~~g--~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYNPQTIL----RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVASFRG--INGAPSFSP 257 (433)
T ss_pred EEEEECCCCCCceEee----cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEeccCCC--CccCceECC
Confidence 5778877533222222 355678889998 7788877643 469999998874 333322222 355789999
Q ss_pred -CCEEE-EEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCC
Q 019258 168 -PTEFV-TGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~ 241 (343)
+..++ +.+.++ .|.+||+.. ++ +..+..+. ......+|+|++..++++...+|. |+++|+..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~---g~-~~~lt~~~-------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGS---RQ-LTRLTNHF-------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCC---CC-eEECccCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 55554 555555 589999876 33 34444322 335678999999877666555565 666666553
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
.. ..+. .+.......+|+|++. .++..+. ++ .|++|+........+.......+.
T Consensus 327 ~~-~~lt-----------~~g~~~~~~~~SpDG~----------~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p 384 (433)
T PRK04922 327 SA-ERLT-----------FQGNYNARASVSPDGK----------KIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP 384 (433)
T ss_pred Ce-EEee-----------cCCCCccCEEECCCCC----------EEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc
Confidence 32 2221 1223344689999988 4555443 33 588898754433344443345567
Q ss_pred eecCCCCCeeEEccCC---ceEEEEe
Q 019258 319 DIDPQNPSDVICSLEW---ESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~---~~i~~~~ 341 (343)
.|+| +|+.++..+++ ..+++++
T Consensus 385 ~~sp-dG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 385 SFAP-NGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred eECC-CCCEEEEEEecCCceEEEEEE
Confidence 8998 56777766653 3455553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-08 Score=91.13 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=126.1
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .+...+.+..|+ |+.++..+ .+..+.+||+.+++ ...+..... ......|+|
T Consensus 180 ~l~~~d~dg~~~~~lt----~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~--~~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR--HNGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCEEee----cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC--CcCCeEECC
Confidence 5777777633322222 245678899998 77777654 34578999998874 444332222 355689999
Q ss_pred -CCEEEEE-eCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE--EccCC
Q 019258 168 -PTEFVTG-GFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW--DLRWQ 241 (343)
Q Consensus 168 -~~~l~t~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw--d~~~~ 241 (343)
+..++.. +.++ .|.+||+.. + .+..+.... ..+....|+|++..++++...+|...+| |+..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~t---g-~~~~lt~~~-------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLAS---G-QIRQVTDGR-------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCC---C-CEEEccCCC-------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 6666544 4444 588899876 3 334443222 4467889999998776665555555555 55543
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
. ...+. .+........|+|++. .++..+. ++ .|++|+........+.......+.
T Consensus 322 ~-~~~lt-----------~~~~~~~~~~~SpDG~----------~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p 379 (429)
T PRK03629 322 A-PQRIT-----------WEGSQNQDADVSSDGK----------FMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETP 379 (429)
T ss_pred C-eEEee-----------cCCCCccCEEECCCCC----------EEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCc
Confidence 2 22222 1223455788999988 4555443 33 478888654433444443344577
Q ss_pred eecCCCCCeeEEccCCce---EEEEe
Q 019258 319 DIDPQNPSDVICSLEWES---IAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~---i~~~~ 341 (343)
.|+| +|+.|+.++.++. +++++
T Consensus 380 ~~Sp-DG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 380 SIAP-NGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred eECC-CCCEEEEEEcCCCceEEEEEE
Confidence 8998 6788888886653 45543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-08 Score=89.26 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=134.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc---------------------CCCeEEEEcC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS---------------------HQSLVAASTL 90 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~---------------------~~~~l~~~s~ 90 (343)
-..+||....|+ +|++|+...+....-+... ...+...+..|. +...++.|..
T Consensus 4 ~~~~~A~~~~~g-----~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 4 ALDYFALSTGDG-----RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred hhheEeecCCCC-----eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 457888877775 4889999543211111111 111222222221 4557899999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
.|.|-+|++..++--..... ..|.++|+++.+. -..|.|++.|+.+..|+.... ...+.+..... .+..+++.|
T Consensus 79 ~g~v~~ys~~~g~it~~~st-~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~-~~~sl~is~D 155 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLST-DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKP-LVSSLCISPD 155 (541)
T ss_pred CccEEEEEecCCeEEEEEec-CCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCC-ccceEEEcCC
Confidence 99999999986553333332 3699999999988 778999999999999999887 46666555444 688999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC-----CCeEEEEEecCCcEEEEEccC
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS-----RKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-----~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+..+++++ ++|++||+.. .+.+.+|.+|. ++|.++.|--. |.+++.+...+.-+.+|=.+.
T Consensus 156 ~~~l~~as--~~ik~~~~~~---kevv~~ftgh~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIET---KEVVITFTGHG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccC---ceEEEEecCCC-------cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 66777665 7999999999 78888899887 89999999766 566776666677788887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=85.75 Aligned_cols=167 Identities=19% Similarity=0.096 Sum_probs=119.3
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----------------------CCEEEEEeCCCcEEE
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----------------------GSECVSVGEDGRVNL 139 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----------------------~~~~~s~s~dg~v~~ 139 (343)
..+++....||.+++|+...++...-......-.+.+++..|. ...++-|-..|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 4678889999999999998543221111110123445555553 135777888999999
Q ss_pred EECCCCceEEEEE-cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 140 VSVIGGGEFKRVY-DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 140 wd~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+++..++...++. ..|.. .|.++.++. ...|-+++.|..+..|+... ...+..+.... ..+.+++..
T Consensus 85 ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~-------~~~~sl~is 153 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKE---KVIIRIWKEQK-------PLVSSLCIS 153 (541)
T ss_pred EEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEeccc---ceeeeeeccCC-------CccceEEEc
Confidence 9998885444444 34555 899999888 77899999999999999977 44444444332 558899999
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
|++. ++++++ ++|++||+.+.+....+ .+|.++|.++.|--.
T Consensus 154 ~D~~-~l~~as--~~ik~~~~~~kevv~~f-----------tgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 154 PDGK-ILLTAS--RQIKVLDIETKEVVITF-----------TGHGSPVRTLSFTTL 195 (541)
T ss_pred CCCC-EEEecc--ceEEEEEccCceEEEEe-----------cCCCcceEEEEEEEe
Confidence 9975 556654 69999999986554444 689999999999866
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=79.97 Aligned_cols=280 Identities=15% Similarity=0.155 Sum_probs=165.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCe-EEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSL-VAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~-l~~~s~dg~ 93 (343)
--++|.-|.|.. +..+++.+-+-. ..+.+|++.-++. .+.+ .-...+.+++|+ +++. |.+...+-.
T Consensus 47 cldki~yieW~a----ds~~ilC~~yk~----~~vqvwsl~Qpew---~ckIdeg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 47 CLDKIVYIEWKA----DSCHILCVAYKD----PKVQVWSLVQPEW---YCKIDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHHHhhheeeec----cceeeeeeeecc----ceEEEEEeeccee---EEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence 347889999998 677777665532 2477999954332 2233 345678999999 7754 555556899
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC------------------------------------CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE------------------------------------DG 135 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~------------------------------------dg 135 (343)
|.+|.+.+.....+... +..+..++++ |+..+.+++ ++
T Consensus 116 iTVWSL~t~~~~~~~~p----K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHP----KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred EEEEEeccceeEEeccc----ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 99999986554433211 1233555555 444333332 23
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCC-CC---------------------
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGS-GG--------------------- 192 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~-~~--------------------- 192 (343)
.+.+||..-.- ..-.++ .+.++..++|+| ++.++.|++|+.+|+.+--+... ++
T Consensus 192 ~laVwd~~Ley-kv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 192 WLAVWDNVLEY-KVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred EEEEecchhhh-eeeeee--eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 34566643221 111222 223699999999 88888899999998854211000 00
Q ss_pred Ce-----------------------------------eEEecccC-CCCCcccCeEEEEEcCCCCeEEEEEecCC---cE
Q 019258 193 PV-----------------------------------LQFKGNFG-SQGKASGMIHSVDIHPSRKHTCLAGGSSG---TV 233 (343)
Q Consensus 193 ~~-----------------------------------~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~~~sg~~dg---~v 233 (343)
++ ..++...+ .... -.+.-++|+++.. .+++ -.|. .+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk--~g~g~lafs~Ds~-y~aT-rnd~~Pnal 344 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK--CGAGKLAFSCDST-YAAT-RNDKYPNAL 344 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc--cccceeeecCCce-EEee-ecCCCCceE
Confidence 00 00000000 0000 2366789999864 3344 3333 48
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccc-cc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLA-EP 312 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~-~~ 312 (343)
-+||+++.+....+. ...+|....|+|..+ .|+.|.....+++|-.........+ ..
T Consensus 345 W~Wdlq~l~l~avLi------------Qk~piraf~WdP~~p----------rL~vctg~srLY~W~psg~~~V~vP~~G 402 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRP----------RLVVCTGKSRLYFWAPSGPRVVGVPKKG 402 (447)
T ss_pred EEEechhhhhhhhhh------------hccceeEEEeCCCCc----------eEEEEcCCceEEEEcCCCceEEecCCCC
Confidence 899999865443333 356899999999988 6888888888999987653322222 34
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEE
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
..|.++.|+-.....++||-|.--+.++
T Consensus 403 F~i~~l~W~~~g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 403 FNIQKLQWLQPGEFIVLCGKDAFCVAIV 430 (447)
T ss_pred ceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence 6789999885444566777665554443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=100.09 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=141.4
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-ceeeeeeccCCcccc--CeEEEEec-----CCEEEEEeCCCcEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVG--PISGVDLT-----GSECVSVGEDGRVN 138 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~--~v~~~~~~-----~~~~~s~s~dg~v~ 138 (343)
+...+.+.++..+ .++-++.++.-| +.+-|+.. ..+.... .|.. .|-.++|+ ...+++.+... -.
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l----~h~tpw~vad~qws~h~a~~~wiVsts~qk-ai 94 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL----HHITPWQVADVQWSPHPAKPYWIVSTSNQK-AI 94 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee----eccCcchhcceecccCCCCceeEEecCcch-hh
Confidence 3445666777666 556677777766 45556652 1222111 1322 46677887 33455555544 56
Q ss_pred EEECCC--CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 139 LVSVIG--GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 139 ~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
+|.+.. ...+.-+..+|.. .++.+-|++ ...+++++-|-.+..||+|+ +..++..+..-. .....|
T Consensus 95 iwnlA~ss~~aIef~lhghsr-aitd~n~~~q~pdVlatcsvdt~vh~wd~rS--p~~p~ys~~~w~-------s~asqV 164 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSR-AITDINFNPQHPDVLATCSVDTYVHAWDMRS--PHRPFYSTSSWR-------SAASQV 164 (1081)
T ss_pred hhhhhcCCccceEEEEecCcc-ceeccccCCCCCcceeeccccccceeeeccC--CCcceeeeeccc-------ccCcee
Confidence 787743 3233334445555 899999999 77899999999999999999 666665554332 457789
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
.|+-..++++| .+....|++||+|.+..|.... ++|...|+.+.|+.--.. .+++++.||
T Consensus 165 kwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~----------K~~vs~vn~~~fnr~~~s---------~~~s~~~d~ 224 (1081)
T KOG0309|consen 165 KWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSL----------KGHVSSVNSIDFNRFKYS---------EIMSSSNDG 224 (1081)
T ss_pred eecccCcchhh-hccCCceEEEeccCCCcceEEe----------cccceeeehHHHhhhhhh---------hhcccCCCC
Confidence 99988888765 4666789999999999999888 789999999999876555 799999999
Q ss_pred eEEEEecCC
Q 019258 295 ILAVVEQGE 303 (343)
Q Consensus 295 ~i~~~~~~~ 303 (343)
+++.|++..
T Consensus 225 tvkfw~y~k 233 (1081)
T KOG0309|consen 225 TVKFWDYSK 233 (1081)
T ss_pred ceeeecccc
Confidence 999999754
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-09 Score=86.44 Aligned_cols=222 Identities=13% Similarity=0.129 Sum_probs=137.2
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--eeeeccCCcc------------ccCeEEEEec----CCEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--LSVDENSGFH------------VGPISGVDLT----GSEC 128 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h------------~~~v~~~~~~----~~~~ 128 (343)
......|+++.|. .+.+|++|...|.|.+|.-..... .........| ...|..+.|. ...|
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3455679999999 788999998899999997653221 1111111122 2368888887 4678
Q ss_pred EEEeCCCcEEEEECCCCc-----------------------------------------eEEEEEcCCCccceEEEEeCC
Q 019258 129 VSVGEDGRVNLVSVIGGG-----------------------------------------EFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 129 ~s~s~dg~v~~wd~~~~~-----------------------------------------~~~~~~~~~~~~~v~~~~~~~ 167 (343)
+..+.|.+|++|.+.... .+.+++...+...+.+++++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 889999999999874320 011222222223577888888
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce---e
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ---S 244 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~---~ 244 (343)
....+..++|-.|.+|.+..-...-.+..++.+.-+. -...|++..|||...+++.-.++.|.|++-|+|+... +
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 5555556679999999998711111223344332111 1145899999998877887788999999999996421 1
Q ss_pred eeee--cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 245 IVLS--GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 245 ~~~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
..+. ..+..+.-....-...|..+.|++.+. ++++ -+--++.+||..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr----------yIls-RdyltvkiwDvn 309 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR----------YILS-RDYLTVKIWDVN 309 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCc----------EEEE-eccceEEEEecc
Confidence 1111 000000000012245789999998876 4444 334588999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-07 Score=85.68 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=121.7
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.++|........+. .+...+....|+ ++.++.+..+ ..|.+||+.+++ ...+.. ... ...+..|+|
T Consensus 171 ~l~~~d~~g~~~~~l~----~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~~~-~~~-~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGANPQTIT----RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKVAS-FPG-MNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCCCEEee----cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEeec-CCC-CccceEECC
Confidence 4666666422222222 244567888888 7778776543 479999998874 333322 222 466789999
Q ss_pred -CCEEE-EEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCC
Q 019258 168 -PTEFV-TGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQ 241 (343)
Q Consensus 168 -~~~l~-t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~ 241 (343)
+..|+ +.+.++ .|.+||+.. .....+..+. .......|+|++..++++...++ .|+++|+...
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~----~~~~~l~~~~-------~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDG----KQLTRLTNGP-------GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCC----CCEEECCCCC-------CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 55555 444444 588888866 2333443222 33446789999987766655444 5777787654
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC---eEEEEecCCCccccccccccccee
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLAEPCAINSF 318 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~~~~~i~s~ 318 (343)
. ...+. .+...+..+.|+|++. .++.++.++ .|++|+........+.+.....+.
T Consensus 313 ~-~~~l~-----------~~~~~~~~~~~spdg~----------~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p 370 (417)
T TIGR02800 313 E-VRRLT-----------FRGGYNASPSWSPDGD----------LIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP 370 (417)
T ss_pred C-EEEee-----------cCCCCccCeEECCCCC----------EEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc
Confidence 3 22222 2345567889999987 567666665 688888755444444443334556
Q ss_pred eecCCCCCeeEEccCCc
Q 019258 319 DIDPQNPSDVICSLEWE 335 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~ 335 (343)
.++| +|+.|+.++..+
T Consensus 371 ~~sp-dg~~l~~~~~~~ 386 (417)
T TIGR02800 371 SFAP-NGRMILYATTRG 386 (417)
T ss_pred eECC-CCCEEEEEEeCC
Confidence 7888 457777766543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=95.67 Aligned_cols=218 Identities=12% Similarity=0.086 Sum_probs=138.7
Q ss_pred ccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-Cceeee---eeccCCccccCeEEEEecCCEEEEEeCCCcEEEE
Q 019258 66 SQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLS---VDENSGFHVGPISGVDLTGSECVSVGEDGRVNLV 140 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~w 140 (343)
...+|...|.++.-. +++.+++++.|.+|++|.+. ++.++. ..-....|+.+|+++.+....-..++.||.+.+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 334566677777665 78899999999999999997 222221 1123346999999999984444455678899999
Q ss_pred ECCCCceEEEEEcCCCcc---ceEEEEeCCCCEEEEE-eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 141 SVIGGGEFKRVYDGNGLV---GFNCVKWASPTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
|.--++...++....... .|.|+.--....++++ +...+|+++|.|. .+-...++...... ..+-+.+++.
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs---ce~~~E~kVcna~~--Pna~~R~iaV 884 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS---CEWTCELKVCNAPG--PNALTRAIAV 884 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc---ccceeeEEeccCCC--CchheeEEEe
Confidence 976553333233222111 3445442224445555 6799999999998 66555555432101 1156899999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
.|.|.+ +++|-++|.|.+.|.|++..... . ...+-...+++- |.++ .++....|.++
T Consensus 885 a~~GN~-lAa~LSnGci~~LDaR~G~vINs-w----------rpmecdllqlaa-psdq----------~L~~saldHsl 941 (1034)
T KOG4190|consen 885 ADKGNK-LAAALSNGCIAILDARNGKVINS-W----------RPMECDLLQLAA-PSDQ----------ALAQSALDHSL 941 (1034)
T ss_pred ccCcch-hhHHhcCCcEEEEecCCCceecc-C----------CcccchhhhhcC-chhH----------HHHhhccccee
Confidence 999865 57888999999999999643222 1 122333444443 3334 57777778888
Q ss_pred EE-EecCCCccccccc
Q 019258 297 AV-VEQGEEPFELLAE 311 (343)
Q Consensus 297 ~~-~~~~~~~~~~~~~ 311 (343)
.+ |..-.+.+-+...
T Consensus 942 aVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDK 957 (1034)
T ss_pred EeeehhcCCeeeeccC
Confidence 87 8765555444433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-06 Score=74.29 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=161.9
Q ss_pred EEEEeecC-CCCCCceeeeeCC-CCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC----CCcEEEEEccCc-eeeeee
Q 019258 37 AVLAIYDT-DADSPSLETHSIS-LPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL----SGSLHVLSSAMQ-VLLSVD 108 (343)
Q Consensus 37 l~t~s~D~-~~~~~~l~~w~~~-~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~----dg~v~v~~~~~~-~~~~~~ 108 (343)
+..|++.. ..+ .|..+++. +......+..........-++++ ++++|++... +|.|..|++... ..+...
T Consensus 2 ~~vgsy~~~~~~--gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGG--GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSST--EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCC--cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 45566664 112 35566662 22223223333344556677777 7777777766 579999998854 233222
Q ss_pred ccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEE---Ec---------CCCccceEEEEeCC-CCEEE
Q 019258 109 ENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRV---YD---------GNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~---~~---------~~~~~~v~~~~~~~-~~~l~ 172 (343)
.........-+.+.++ ++.++++. .+|.|.++++.....+... .. ........++.++| ++.++
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2111111233457775 77766665 6999999999763222222 21 12223688999999 56666
Q ss_pred EEeC-CCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee-e
Q 019258 173 TGGF-GYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV-L 247 (343)
Q Consensus 173 t~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~-~ 247 (343)
+... ...|.+|++.. ....+.. +....+ ..-..+.|+|++..++++.-.+++|.++++........ .
T Consensus 160 v~dlG~D~v~~~~~~~--~~~~l~~~~~~~~~~G------~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDD--DTGKLTPVDSIKVPPG------SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EEETTTTEEEEEEE-T--TS-TEEEEEEEECSTT------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEEEeC--CCceEEEeeccccccC------CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 5544 77899999976 2222322 222221 44778999999998888888899999999982221111 1
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Cccccccc----ccccceeeec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFELLAE----PCAINSFDID 321 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~~~----~~~i~s~~~~ 321 (343)
....... ...........|+++|++.. ..++....+.|.+++.+. ...+.... ...-..|.++
T Consensus 232 ~~~~~~~--~~~~~~~~~~~i~ispdg~~---------lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 232 QTISTLP--EGFTGENAPAEIAISPDGRF---------LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp EEEESCE--TTSCSSSSEEEEEE-TTSSE---------EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred EEeeecc--ccccccCCceeEEEecCCCE---------EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 1000000 00111235789999999885 455556777888887632 22222222 2336889999
Q ss_pred CCCCCeeEEcc-CCceEEEEeC
Q 019258 322 PQNPSDVICSL-EWESIAIVSR 342 (343)
Q Consensus 322 ~~~~~~l~~~~-~~~~i~~~~~ 342 (343)
| +|++|+.+. +.+.|.+|++
T Consensus 301 ~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 301 P-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp T-TSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEEecCCCeEEEEEE
Confidence 8 568887776 5568888864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.97 E-value=9e-07 Score=81.78 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=122.8
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---CcEEEEEccCceeeeeeccCCccccCeEEEEec
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS---GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT 124 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d---g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 124 (343)
..|++++...... .....+...+.+..|+ +++.|+.++.+ ..|++|++..++...+. .+.+.+.++.|+
T Consensus 170 ~~l~~~d~~g~~~---~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGANP---QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCCC---EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEEC
Confidence 3577887743221 2223455578888999 88888776643 47899998755433222 233455667887
Q ss_pred --CCEEE-EEeCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC--cEEEEEccccCCCCCee
Q 019258 125 --GSECV-SVGEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 125 --~~~~~-s~s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~ 195 (343)
++.|+ +.+.++ .|.+||+.++. ...+.... . ......|++ +..++..+. ++ .|.++|+.. + ...
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~-~-~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---~-~~~ 315 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGP-G-IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG---G-EVR 315 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCC-C-CCCCEEECCCCCEEEEEECCCCCceEEEEECCC---C-CEE
Confidence 66665 445444 58888988763 44443322 2 244668888 666665554 33 566777755 3 233
Q ss_pred EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
.+.... .......|+|++..++++....+ .|.+||+.... ...+. . ........|+|+
T Consensus 316 ~l~~~~-------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~~~l~----------~--~~~~~~p~~spd 375 (417)
T TIGR02800 316 RLTFRG-------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-ERVLT----------D--TGLDESPSFAPN 375 (417)
T ss_pred EeecCC-------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-eEEcc----------C--CCCCCCceECCC
Confidence 343222 44678899999987665543332 68888987632 22222 1 112345679999
Q ss_pred CCCCcCCCCCccceEEEecCC---eEEEEecC
Q 019258 274 TKSSNISSSRVLPAMFCSEDG---ILAVVEQG 302 (343)
Q Consensus 274 ~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~ 302 (343)
+. .|+..+.++ .+++.+..
T Consensus 376 g~----------~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 376 GR----------MILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CC----------EEEEEEeCCCcEEEEEEECC
Confidence 87 455555443 35555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=84.52 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=126.4
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCe
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPV 194 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~ 194 (343)
+-.+++.+|+++++++.- .+.+-|.++- ++.+++..-+ .|.-+.|.. ...+.....|+.|.+|++.+ .+-.
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tl-q~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Q---pew~ 84 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETL-QLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQ---PEWY 84 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchh-hHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeec---ceeE
Confidence 445555559999999887 6777777665 2444433333 366677766 33444555588999999977 3333
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
..+... + +.+.+++|+|+|++++.+..-|-+|.+|.+.+... ..+. --...+..++|+|++
T Consensus 85 ckIdeg---~----agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~-----------~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 85 CKIDEG---Q----AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLP-----------HPKTNVKGYAFHPDG 145 (447)
T ss_pred EEeccC---C----CcceeeeECCCcceEeeeecceeEEEEEEecccee-EEec-----------ccccCceeEEECCCC
Confidence 333311 1 67999999999999999999999999999987432 2222 113346788999988
Q ss_pred CCCcCCCCC----ccceEE---------------------EecCC-eEEEEecCCCccccccc-ccccceeeecCCCCCe
Q 019258 275 KSSNISSSR----VLPAMF---------------------CSEDG-ILAVVEQGEEPFELLAE-PCAINSFDIDPQNPSD 327 (343)
Q Consensus 275 ~~~~~~~~~----~~~l~s---------------------~s~dg-~i~~~~~~~~~~~~~~~-~~~i~s~~~~~~~~~~ 327 (343)
......++| ...+.+ -|-|| -|.+||...+-..+..+ ..-+..++++| .+++
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qf 224 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQF 224 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccce
Confidence 731000000 000000 12233 35567665444333333 46789999999 5699
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
|+.|+-|+.++++|-
T Consensus 225 lavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNH 239 (447)
T ss_pred EEeeccchhhhhhce
Confidence 999999999988764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-06 Score=78.02 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=159.8
Q ss_pred ceeeEEecCCCCCCCCeEEEE-----eecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLA-----IYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~-----s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
++.++.++| .+.+|.|= ..|+..+..-+.+|++.+ .......+...... ++..|+.++.|++--..+.+
T Consensus 75 ~~~~L~fSP----~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev 148 (566)
T KOG2315|consen 75 KTYDLLFSP----KGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEV 148 (566)
T ss_pred eeeeeeecc----cccccccccccccccCCCCCCCceeeeeecc-ceehhheehhhhcC-cccccccchhhhhhhhcceE
Confidence 889999999 45444431 123333334477888865 22111111122222 68888866677777778899
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-C--CEEE------EEeCCCcEEEEECCCCc--eE--EEEEcCCCccceE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-G--SECV------SVGEDGRVNLVSVIGGG--EF--KRVYDGNGLVGFN 161 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~~------s~s~dg~v~~wd~~~~~--~~--~~~~~~~~~~~v~ 161 (343)
++|+..+...... ..|...|+.+.++ + ...+ ..|.-..|++|...-.. .+ .+.+...+ =-
T Consensus 149 ~f~~~~~f~~~~~----kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad---kv 221 (566)
T KOG2315|consen 149 QFYDLGSFKTIQH----KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD---KV 221 (566)
T ss_pred EEEecCCccceee----eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc---ee
Confidence 9999985332211 2467788888888 4 2222 23556789999876211 11 11111111 23
Q ss_pred EEEeCC--CCEEEEEeC--CC---------cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE-EEE
Q 019258 162 CVKWAS--PTEFVTGGF--GY---------GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC-LAG 227 (343)
Q Consensus 162 ~~~~~~--~~~l~t~~~--d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~-~sg 227 (343)
.+.|+. ..+|+.++. |+ ++.+.++.. ......+. ..++|+++.|+|++.... +-|
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g---~s~~V~L~--------k~GPVhdv~W~~s~~EF~VvyG 290 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG---ESVSVPLL--------KEGPVHDVTWSPSGREFAVVYG 290 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC---ceEEEecC--------CCCCceEEEECCCCCEEEEEEe
Confidence 567776 333333322 44 466666543 22222222 118999999999986543 335
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---CeEEEEecCCC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GILAVVEQGEE 304 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~ 304 (343)
..=-++.|||+|- .++.-. -+++=+++-|+|.+. .++.|+-+ |.|-+||-..
T Consensus 291 fMPAkvtifnlr~--~~v~df------------~egpRN~~~fnp~g~----------ii~lAGFGNL~G~mEvwDv~n- 345 (566)
T KOG2315|consen 291 FMPAKVTIFNLRG--KPVFDF------------PEGPRNTAFFNPHGN----------IILLAGFGNLPGDMEVWDVPN- 345 (566)
T ss_pred cccceEEEEcCCC--CEeEeC------------CCCCccceEECCCCC----------EEEEeecCCCCCceEEEeccc-
Confidence 5677899999984 344433 367788999999998 45555543 6799999755
Q ss_pred cccccccc--cccceeeecCCCCCeeEEccCCceEEE
Q 019258 305 PFELLAEP--CAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 305 ~~~~~~~~--~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
..++... ..-.-++|+| +|++++.++...+++|
T Consensus 346 -~K~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 346 -RKLIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRV 380 (566)
T ss_pred -hhhccccccCCceEEEEcC-CCcEEEEEeccccEEe
Confidence 3344442 3456689999 6788888876644443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-06 Score=80.95 Aligned_cols=196 Identities=17% Similarity=0.125 Sum_probs=116.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEE-EEcCCC-
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVA-ASTLSG- 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~-~~s~dg- 92 (343)
.+...+...+|+| +++.|+..+.++. ...|++|++..... ..+. ...+.+....|+ +++.|+ +.+.+|
T Consensus 196 ~~~~~~~~p~wSp----DG~~la~~s~~~~--~~~l~~~~l~~g~~-~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 196 QSREPILSPRWSP----DGKRIAYVSFEQK--RPRIFVQNLDTGRR-EQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred cCCCceeeeeECC----CCCEEEEEEcCCC--CCEEEEEECCCCCE-EEcc--CCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 3456788899999 8888887776542 34588999854321 1122 233456678899 777766 444555
Q ss_pred -cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC--cEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 93 -SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 93 -~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
.|.+|++...+...+. .+........|+ ++.++..+ .+| .|.++|+.+++ ..++..... ......|+
T Consensus 267 ~~Iy~~d~~~~~~~~lt----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~--~~~~~~~S 339 (430)
T PRK00178 267 PEIYVMDLASRQLSRVT----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGN--YNARPRLS 339 (430)
T ss_pred ceEEEEECCCCCeEEcc----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCC--CccceEEC
Confidence 5777777644322221 233445566777 67666555 344 46677877764 444432222 23456788
Q ss_pred C-CCEEEEEeC-CC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEcc
Q 019258 167 S-PTEFVTGGF-GY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLR 239 (343)
Q Consensus 167 ~-~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~ 239 (343)
| ++.++..+. ++ .|.++|+.. ++ ...+... .......|+|++..++++...+|. +.++++.
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~t---g~-~~~lt~~--------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQR---GS-VRILTDT--------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCC---CC-EEEccCC--------CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 8 666666654 33 477888876 33 3333311 112245899999988777666554 5555664
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-07 Score=73.59 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=127.4
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE---EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG---VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
.-..|+.|+..|...+|.....+......- .|...|+- .+-+.-.+..++.|.++++.+++.+. .......+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~~~h~~~- 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKFAVHNQN- 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCc-ccceeeccc-
Confidence 557899999999999998874443221111 12222221 12224457788999999999887653 222222222
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.....+++++ +..+++.++...|-.|.+.. .++.+........ .+.-.+..|+... ..||++++||++.||
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~~~~a~t-----~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIENIYEAPT-----SDHGFYNSFSEND-LQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeeeeEeccc-----CCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence 2578889999 88889999999999999876 4555544222111 1446678888764 578999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CCeEEEEecC
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DGILAVVEQG 302 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~i~~~~~~ 302 (343)
|+|....|...... ....|.+.+..+.|++.+.. -|+.-++ -+.+.+.|..
T Consensus 231 DVR~~~tpm~~~ss------trp~hnGa~R~c~Fsl~g~l---------DLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 231 DVRNMATPMAEISS------TRPHHNGAFRVCRFSLYGLL---------DLLFISEHFSRVHVVDTR 282 (344)
T ss_pred Eecccccchhhhcc------cCCCCCCceEEEEecCCCcc---------eEEEEecCcceEEEEEcc
Confidence 99987766554311 12458999999999987663 3444443 3556666653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-05 Score=64.27 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=166.8
Q ss_pred eEEEEeecCCCCCCceeeeeCC-CCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCc-eeeeeec
Q 019258 36 LAVLAIYDTDADSPSLETHSIS-LPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQ-VLLSVDE 109 (343)
Q Consensus 36 ~l~t~s~D~~~~~~~l~~w~~~-~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~-~~~~~~~ 109 (343)
.+..|++.+... --|..|++. ..............+.++=|+|+ +.+.|.++-. +|.|..|.+... ..+....
T Consensus 4 ~~YiGtyT~~~s-~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRES-QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCC-CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 345666663211 126788885 33345555566777888899999 6667877765 578999988742 2333322
Q ss_pred cCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCC-Cc--eEEEEEcCC--------CccceEEEEeCC-CCEEEEE
Q 019258 110 NSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIG-GG--EFKRVYDGN--------GLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~-~~--~~~~~~~~~--------~~~~v~~~~~~~-~~~l~t~ 174 (343)
....-..+-+.++++ ++.++++. .-|.|.++-+.. +. .+.....+. ....+....+.| ++.+++.
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 111111222677777 66776665 567889988855 21 111221111 111377888889 6666666
Q ss_pred eC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 175 GF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 175 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
.. -..|.+|++.. +.-.+........+ +--.-|.|||+++...+..--+++|.+|...........++ ..
T Consensus 163 DLG~Dri~~y~~~d-g~L~~~~~~~v~~G------~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i 233 (346)
T COG2706 163 DLGTDRIFLYDLDD-GKLTPADPAEVKPG------AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TI 233 (346)
T ss_pred ecCCceEEEEEccc-CccccccccccCCC------CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--ee
Confidence 65 66789999975 11122222222221 44678999999988777777799999999876422222111 11
Q ss_pred cccccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEec--CCCccccccc----ccccceeeecCCCC
Q 019258 254 EAVTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQ--GEEPFELLAE----PCAINSFDIDPQNP 325 (343)
Q Consensus 254 ~~~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~--~~~~~~~~~~----~~~i~s~~~~~~~~ 325 (343)
.+++... -.....+|..+|+++ +|+++- ....|.++.- .....++... ...-..|++++ .+
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGr----------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g 302 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGR----------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SG 302 (346)
T ss_pred ccCccccCCCCceeEEEECCCCC----------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CC
Confidence 1111111 134567888899987 444441 1125666543 2222222221 34468999998 67
Q ss_pred CeeEEccCC-ceEEEEeC
Q 019258 326 SDVICSLEW-ESIAIVSR 342 (343)
Q Consensus 326 ~~l~~~~~~-~~i~~~~~ 342 (343)
++|+++..+ +.|.+|.|
T Consensus 303 ~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 303 RFLIAANQKSDNITVFER 320 (346)
T ss_pred CEEEEEccCCCcEEEEEE
Confidence 999999866 57888765
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-06 Score=75.59 Aligned_cols=223 Identities=13% Similarity=0.151 Sum_probs=135.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc--CCCeEEEEcC---
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS--HQSLVAASTL--- 90 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~--~~~~l~~~s~--- 90 (343)
+...|+.+..+|.+ ....+|+=--.....-..++||.++......++..-. ....=-.+.|. ...+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 35678999999932 2334433211111112357899997433332222211 11223356666 3344444433
Q ss_pred --------CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe--CCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 91 --------SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 91 --------dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
..+++++.+. ++...+.- .-.++|+++.|+ +..|+.+- .=-++.++|++.. .+..+ ...
T Consensus 242 ktn~SYYGEq~Lyll~t~-g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df---~eg- 312 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ-GESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEG- 312 (566)
T ss_pred CCCccccccceEEEEEec-CceEEEec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC---CCC-
Confidence 2356666665 22222221 246899999999 77776553 5567999998765 23333 333
Q ss_pred ceEEEEeCC-CCEEEEEeC---CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec-----
Q 019258 159 GFNCVKWAS-PTEFVTGGF---GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS----- 229 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~----- 229 (343)
+-.++-|+| ++.++.+|. -|.|.+||... .+.+..+... ..+-++|+|+|++++.+.+.
T Consensus 313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~---------~tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAA---------NTTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred CccceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccC---------CceEEEEcCCCcEEEEEeccccEEe
Confidence 567888999 888888877 68899999988 7777777643 36678999999987654443
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
|..++||+..-. ..... ....+.+++.|-|...
T Consensus 381 dNg~KiwhytG~-~l~~~------------~f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 381 DNGIKIWHYTGS-LLHEK------------MFKSELLQVEWRPFND 413 (566)
T ss_pred cCCeEEEEecCc-eeehh------------hhhHhHhheeeeecCC
Confidence 788999998642 21111 1223688899987654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-06 Score=76.38 Aligned_cols=189 Identities=15% Similarity=0.099 Sum_probs=118.0
Q ss_pred CEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 126 SEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 126 ~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
+.+ ++-..++.|.+.|..+.+ +...+..... .-..+.+++ +.++..++.|+.|.++|+.+ .+.+.++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~-~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~~G--- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK-VVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIKVG--- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S-EEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE-S---
T ss_pred cEEEEEecCCCEEEEEECCCCe-EEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEecC---
Confidence 344 456678999999999985 5555554443 234467888 77888889999999999999 7777777643
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSR 283 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~ 283 (343)
....+++++|+|++++++...++.+.++|.++.+....+...+. ....-+..+.+|..+|..+.
T Consensus 78 -----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~----~~~~~~~Rv~aIv~s~~~~~------- 141 (369)
T PF02239_consen 78 -----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM----PVDGPESRVAAIVASPGRPE------- 141 (369)
T ss_dssp -----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-----TTTS---EEEEEE-SSSSE-------
T ss_pred -----CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc----cccccCCCceeEEecCCCCE-------
Confidence 34778999999999888888899999999988654443331000 00112456788888888775
Q ss_pred ccceEEEecCCeEEEEecCCC-cc--cccccccccceeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 284 VLPAMFCSEDGILAVVEQGEE-PF--ELLAEPCAINSFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 284 ~~~l~s~s~dg~i~~~~~~~~-~~--~~~~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
++++--+-+.|++.+.... .. ...........+.++| ++++++.+ .....|.+++
T Consensus 142 --fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 142 --FVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp --EEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEE
T ss_pred --EEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEe
Confidence 5556666689999987543 21 1122234567788888 45665543 4444666554
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-07 Score=76.98 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=102.2
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC--CCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA--SLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~--~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
.+++++.+.+ +.+.|+.|-..+. +.-+.+.++- ...+...+.|.+.|..+-|+ ....+++.+.|..+.
T Consensus 69 ~~~~~~~y~~----e~~~L~vg~~ngt-----vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 69 SPCSAMEYVS----ESRRLYVGQDNGT-----VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred CCceEeeeec----cceEEEEEEecce-----EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 4567777777 6667777755543 2244443321 12223345677888888887 556666666554332
Q ss_pred EEEcc-Cc--------------------------------------eeeeeeccCCccccCeEEEEec--CCEEEEEeCC
Q 019258 96 VLSSA-MQ--------------------------------------VLLSVDENSGFHVGPISGVDLT--GSECVSVGED 134 (343)
Q Consensus 96 v~~~~-~~--------------------------------------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d 134 (343)
|... .+ +.+.+.....+|.++++++.|. ...+.+|..|
T Consensus 140 -~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 140 -WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred -EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 2110 00 0011222335689999999999 7788999999
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
..+.+||+...+-......+|.. .|..+.+.+ ...+++++.||.|.+||...
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999764333333344444 688888888 78899999999999999854
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-06 Score=76.81 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=112.8
Q ss_pred cccCeEEEEec--CCEEEEEeCC---CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCC--cEEEEE
Q 019258 114 HVGPISGVDLT--GSECVSVGED---GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGY--GLQWWD 184 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~d---g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~--~i~iwd 184 (343)
+...+....|+ ++.++..+.+ ..|.+||+.++. ...+..... ......|+| +..++ +...++ .|.+||
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQITNFEG--LNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEccCCCC--CcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 55678888998 7788766543 358889998874 444332222 355789999 66665 444455 577888
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCcc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
+.. + ....+.... .......|+|++..++.+...+| .|+++|+..++. ..+.. . .
T Consensus 274 ~~~---~-~~~~lt~~~-------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~---------~--~ 330 (430)
T PRK00178 274 LAS---R-QLSRVTNHP-------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTF---------V--G 330 (430)
T ss_pred CCC---C-CeEEcccCC-------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeec---------C--C
Confidence 876 3 334443322 33556789999988776655555 477777765432 22220 1 1
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEe-cCC--eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC---ce
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDG--ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW---ES 336 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg--~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~---~~ 336 (343)
.......|+|++. .++..+ .++ .|++++........+.+.....+..|+| +|+.++..+.. ..
T Consensus 331 ~~~~~~~~Spdg~----------~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 331 NYNARPRLSADGK----------TLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAP-NGTMLIYATRQQGRGV 399 (430)
T ss_pred CCccceEECCCCC----------EEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 2233568999987 455444 344 4777876543333344332334567888 56777766543 24
Q ss_pred EEEE
Q 019258 337 IAIV 340 (343)
Q Consensus 337 i~~~ 340 (343)
++++
T Consensus 400 l~~~ 403 (430)
T PRK00178 400 LMLV 403 (430)
T ss_pred EEEE
Confidence 5544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=79.59 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeecc-CCccccCeEEEEecCCEEEEEeC------CCcEEEEECCCCceEEEEEc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDEN-SGFHVGPISGVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~ 153 (343)
.+..++.+..||.+.+++.+. .+...+. ...|.+.....-.....++..+. -+..+.|+++..+.......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechH--HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 567799999999999998873 1111111 11122211111111222333332 23456666655332222212
Q ss_pred CCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 154 GNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 154 ~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
..+ .|.+++-+| ++.+++|+.||.+-+||.|. ...|...++.|. .++.-+-|||+.+.-++++++||
T Consensus 178 ~~~--~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn--~~~p~S~l~ahk-------~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 178 ALD--AVTALCSHPAQQHLVCCGTDDGIVGLWDARN--VAMPVSLLKAHK-------AEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred ccc--cchhhhCCcccccEEEEecCCCeEEEEEccc--ccchHHHHHHhh-------hhhhheeccCCCchheeEecCCC
Confidence 222 488888888 77888888999999999999 444555566665 88999999999877778999999
Q ss_pred cEEEEEccC
Q 019258 232 TVFAWDLRW 240 (343)
Q Consensus 232 ~v~iwd~~~ 240 (343)
.+--||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999864
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-09 Score=96.01 Aligned_cols=204 Identities=14% Similarity=0.182 Sum_probs=134.0
Q ss_pred CCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEe----CCCcEEE
Q 019258 70 PPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVG----EDGRVNL 139 (343)
Q Consensus 70 ~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s----~dg~v~~ 139 (343)
....+.|+++. +...+++|..+|.|.+-.+...+.- -.+....|..+|++++|+ .+.++.|- .|..+++
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34457777766 4467999999999999888743221 123334688899999999 34555542 5678999
Q ss_pred EECCCCc-eEEE--EEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEE
Q 019258 140 VSVIGGG-EFKR--VYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 140 wd~~~~~-~~~~--~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
||+.+.- .+.. .+..........++|.. ...+++|...+.++++|+|+ .......+. . ..+..+.
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svn--T-------k~vqG~t 202 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVN--T-------KYVQGIT 202 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--hhhhhhhhh--h-------hhcccce
Confidence 9998741 0111 11111112466788887 77788888899999999997 122111121 1 3466788
Q ss_pred EcCCCCeEEEEEecCCcEEEEE-ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWD-LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED- 293 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d- 293 (343)
+.|-..+.+ +...||.|.+|| .++-+.|+....... ......+.+++|+|..+. .+++++.|
T Consensus 203 Vdp~~~nY~-cs~~dg~iAiwD~~rnienpl~~i~~~~------N~~~~~l~~~aycPtrtg---------lla~l~RdS 266 (783)
T KOG1008|consen 203 VDPFSPNYF-CSNSDGDIAIWDTYRNIENPLQIILRNE------NKKPKQLFALAYCPTRTG---------LLAVLSRDS 266 (783)
T ss_pred ecCCCCCce-eccccCceeeccchhhhccHHHHHhhCC------CCcccceeeEEeccCCcc---------hhhhhccCc
Confidence 888555665 456799999999 777666655442111 111235999999999876 78888877
Q ss_pred CeEEEEec
Q 019258 294 GILAVVEQ 301 (343)
Q Consensus 294 g~i~~~~~ 301 (343)
++|+.++.
T Consensus 267 ~tIrlydi 274 (783)
T KOG1008|consen 267 ITIRLYDI 274 (783)
T ss_pred ceEEEecc
Confidence 46887764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-06 Score=76.41 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred cccCeEEEEec--CCEEEEEeC-CC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCc--EEEEE
Q 019258 114 HVGPISGVDLT--GSECVSVGE-DG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYG--LQWWD 184 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~-dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~--i~iwd 184 (343)
+...+.+..|+ ++.++..+. ++ .|.+||+.+++ ...+..... ......|+| +..++ +.+.++. |.++|
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSFPG--INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCCCC--CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 44577888888 777776543 33 57888988764 333322222 245678999 66555 4555665 66677
Q ss_pred ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCCceeeeeecCCCCcccccCCcc
Q 019258 185 LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
+.. ..+..+..+. ......+|+|++..++++...+|. |+++|+..++. ..+. ...
T Consensus 293 l~t----g~~~~lt~~~-------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt-----------~~g 349 (448)
T PRK04792 293 IAT----KALTRITRHR-------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLT-----------FEG 349 (448)
T ss_pred CCC----CCeEECccCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEe-----------cCC
Confidence 765 3344444322 345678999999888777655555 56667665432 2221 011
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEec-CC--eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC-c--e
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DG--ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW-E--S 336 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg--~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~-~--~ 336 (343)
.......|+|++. .++..+. ++ .|++++........+.......+..|+| +|+.|+..+.+ + .
T Consensus 350 ~~~~~~~~SpDG~----------~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~sp-dG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 350 EQNLGGSITPDGR----------SMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAP-NGTMVIYSTTYQGKQV 418 (448)
T ss_pred CCCcCeeECCCCC----------EEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 2233568999987 4554444 44 3555665443333333332233457888 55776665543 3 2
Q ss_pred EEEEe
Q 019258 337 IAIVS 341 (343)
Q Consensus 337 i~~~~ 341 (343)
+++++
T Consensus 419 l~~~~ 423 (448)
T PRK04792 419 LAAVS 423 (448)
T ss_pred EEEEE
Confidence 55543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-05 Score=65.72 Aligned_cols=154 Identities=11% Similarity=0.022 Sum_probs=103.3
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccC--eEEEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCCCc
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGP--ISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGL 157 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~--v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~ 157 (343)
-.+.-++.|.+++++++.....-.. .|... ++++.++ +...++.++...|..|.++... ...+++.....
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFA-----VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred cceeeccCCcceeEEEEecCcccce-----eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 3466677888888888763221111 24433 6677777 7888999999999999997632 34444444333
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-eEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-HTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~~~sg~~dg~v~i 235 (343)
..=.+.+|+. ...|+++..||++.|||+|. .+.|....... +..+.+.+..+.|+|.|. .+++..-.=+.+.+
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~--~~tpm~~~sst---rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRN--MATPMAEISST---RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecc--cccchhhhccc---CCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 3566788888 77899999999999999998 44444333221 222448899999998764 23333344568999
Q ss_pred EEccCCceeee
Q 019258 236 WDLRWQQQSIV 246 (343)
Q Consensus 236 wd~~~~~~~~~ 246 (343)
.|+|+......
T Consensus 279 ~D~R~~~~~q~ 289 (344)
T KOG4532|consen 279 VDTRNYVNHQV 289 (344)
T ss_pred EEcccCceeeE
Confidence 99998654433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=83.09 Aligned_cols=183 Identities=12% Similarity=0.116 Sum_probs=114.5
Q ss_pred CccCCCCCCeeEEEcc---CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 65 HSQWTPPTRISSLSTS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
.++++.+..-.| +|+ .+.. ++.+.+-.|-+-++.++..-.+ .-++.|.+++|. ++.+..|+..|.|..
T Consensus 206 ~~SlQi~~a~~C-awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf-----~sksDVfAlQf~~s~nLv~~GcRngeI~~ 278 (425)
T KOG2695|consen 206 LCSLQIPKAWSC-AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSF-----QSKSDVFALQFAGSDNLVFNGCRNGEIFV 278 (425)
T ss_pred eeeecCCcchhh-hhhhccceee-ecccccceeEEEEeeccccccc-----ccchhHHHHHhcccCCeeEecccCCcEEE
Confidence 444554443333 666 3344 4444555566667664322111 134578888887 788899999999999
Q ss_pred EECCCC----ceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCC---eeEEecccCCCCCcccC
Q 019258 140 VSVIGG----GEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGP---VLQFKGNFGSQGKASGM 210 (343)
Q Consensus 140 wd~~~~----~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~ 210 (343)
.|++.+ ..+...+ .|++ .|+++.... ++.|++.+.+|+|++||+|. .+. +.++++|... ..
T Consensus 279 iDLR~rnqG~~~~a~rl-yh~S-svtslq~Lq~s~q~LmaS~M~gkikLyD~R~---~K~~~~V~qYeGHvN~-----~a 348 (425)
T KOG2695|consen 279 IDLRCRNQGNGWCAQRL-YHDS-SVTSLQILQFSQQKLMASDMTGKIKLYDLRA---TKCKKSVMQYEGHVNL-----SA 348 (425)
T ss_pred EEeeecccCCCcceEEE-EcCc-chhhhhhhccccceEeeccCcCceeEeeehh---hhcccceeeeeccccc-----cc
Confidence 999763 2223332 2444 688887765 67788888899999999998 555 7778866521 11
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
-.-+..++.. ..++++++|...+||.++.+.....+.. .+..-+..++.++|..
T Consensus 349 ~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf-------~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 349 YLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF-------PYSASEVDIPSVAFDS 402 (425)
T ss_pred cccccccccc-ceEEEccCeeEEEEEecccCceeeccCC-------CCccccccccceehhc
Confidence 2223344544 4567799999999999997644333321 1123344567777753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.9e-05 Score=64.96 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=152.0
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCC-CeeEEEcc-CCCeEEEEc
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPT-RISSLSTS-HQSLVAAST 89 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~-~v~~v~~~-~~~~l~~~s 89 (343)
........++=|+|+| +++.|-++-.+++.+. +.-+.+..+ .....+......+ +-.-++.+ ++++++++.
T Consensus 34 ~~v~~~~nptyl~~~~----~~~~LY~v~~~~~~gg--vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 34 QLVAELGNPTYLAVNP----DQRHLYVVNEPGEEGG--VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred hhccccCCCceEEECC----CCCEEEEEEecCCcCc--EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence 3344556778889999 7888888877765553 445555332 2222222222222 22667777 677887777
Q ss_pred C-CCcEEEEEccCceeeeeeccCCccccC----------eEEEEec--CCEEEEEe--CCCcEEEEECCCCceEE-EEEc
Q 019258 90 L-SGSLHVLSSAMQVLLSVDENSGFHVGP----------ISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFK-RVYD 153 (343)
Q Consensus 90 ~-dg~v~v~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~-~~~~ 153 (343)
. .|.|.++.++....+......-.|.++ +....+. +++++++. .| .|.+|++..++... ....
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccc
Confidence 5 789999999742222111111124443 7777777 66776654 55 49999998754211 1111
Q ss_pred CCCccceEEEEeCC-CCEEEEE-eCCCcEEEEEccccCCCCCeeEEeccc----CCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTG-GFGYGLQWWDLRRAGSGGPVLQFKGNF----GSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
-.....-+-+.|+| .+..-.. -.+++|.+|+... ....+..+..+. +-.+. .+...|..+|+|+++.++-
T Consensus 187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~--~~g~~~~lQ~i~tlP~dF~g~--~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP--AVGKFEELQTIDTLPEDFTGT--NWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC--CCceEEEeeeeccCccccCCC--CceeEEEECCCCCEEEEec
Confidence 12233689999999 4433333 3499999999866 223333332221 11111 5577899999999887664
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC-eEEEEecC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG-ILAVVEQG 302 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg-~i~~~~~~ 302 (343)
-....|.+|-+......+.+.... ..+...-....|+|++. +|+.+.+++ .|.++..+
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~-------~teg~~PR~F~i~~~g~----------~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGIT-------PTEGQFPRDFNINPSGR----------FLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEe-------ccCCcCCccceeCCCCC----------EEEEEccCCCcEEEEEEc
Confidence 444578888765543333333111 22333457788888877 677776665 57776544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-06 Score=73.74 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=117.6
Q ss_pred CeE-EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 83 SLV-AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 83 ~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+++ ++-..+|.|.+.|..+.+.+..... ....-..+.++ +++++.++.||.|.++|+.+.+...++ .... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i-~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI-KVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE-E-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE-ecCC--C
Confidence 444 4555689999999986655544432 11222335555 788999999999999999998644444 3333 4
Q ss_pred eEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 160 FNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
..++++++ +.+++++. ..+.+.++|.++ .+++..+.............+..|..+|..+..+++--+.+.|.+.|
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 78899999 77776665 499999999988 77787765432111112245778887887765555556668898889
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
......+.... ...........|+|++.. ++++.-.++.|-+++...
T Consensus 157 y~d~~~~~~~~----------i~~g~~~~D~~~dpdgry---------~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 157 YSDPKNLKVTT----------IKVGRFPHDGGFDPDGRY---------FLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TTTSSCEEEEE----------EE--TTEEEEEE-TTSSE---------EEEEEGGGTEEEEEETTT
T ss_pred eccccccceee----------ecccccccccccCcccce---------eeecccccceeEEEeecc
Confidence 87653322211 112344567899999874 455556666777777544
|
... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-05 Score=72.27 Aligned_cols=238 Identities=10% Similarity=-0.017 Sum_probs=128.3
Q ss_pred CceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe---EEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEE
Q 019258 49 PSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL---VAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVD 122 (343)
Q Consensus 49 ~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~---l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~ 122 (343)
..||+.+....+. ..++ .....+.+=.|+ ++.. +++...+| .|.+.++..++...+.. ..+......
T Consensus 165 ~~l~~~d~dG~~~-~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~~~~p~ 237 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGNQLMPT 237 (428)
T ss_pred ceEEEEcCCCCCc-eEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCCccceE
Confidence 3567777644321 1122 233455667888 6543 23444454 45566666444333332 223344567
Q ss_pred ec--CCEEEEEeC-CC----cEEEEECCCC--ceEEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCC
Q 019258 123 LT--GSECVSVGE-DG----RVNLVSVIGG--GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSG 191 (343)
Q Consensus 123 ~~--~~~~~s~s~-dg----~v~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~ 191 (343)
|+ |+.++..+. +| .+..|++..+ ....++...... .....+|+| +..|+..+ .++...+|.+.....+
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 77 777775542 23 3444676642 134444433222 245679999 66666655 4676666654320012
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.....+.... ..+....|+|+|..++.++..+| .|.+||+..++. ..+. .....+....
T Consensus 317 ~~~~~lt~~~-------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt-----------~~~~~~~~p~ 377 (428)
T PRK01029 317 QSPRLLTKKY-------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLT-----------TSPENKESPS 377 (428)
T ss_pred cceEEeccCC-------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEcc-----------CCCCCccceE
Confidence 2233343222 44678899999988776655544 689999977543 2222 1123456789
Q ss_pred EeecCCCCcCCCCCccceEEEecC--CeEEEEecCCCccc-ccccccccceeeecC
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSED--GILAVVEQGEEPFE-LLAEPCAINSFDIDP 322 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~d--g~i~~~~~~~~~~~-~~~~~~~i~s~~~~~ 322 (343)
|+|++.. .++++..+ ..|++++....... +......+...+|+|
T Consensus 378 wSpDG~~---------L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 378 WAIDSLH---------LVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ECCCCCE---------EEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecC
Confidence 9999874 33344333 45888886544333 333334455666665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-05 Score=70.12 Aligned_cols=259 Identities=10% Similarity=0.061 Sum_probs=147.4
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecC-CCCCCceeeeeCCCC-CCCCCCccCC-CCCCeeEEEcc-CCCeEEEEc-CC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDT-DADSPSLETHSISLP-ASLTPHSQWT-PPTRISSLSTS-HQSLVAAST-LS 91 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~-~~~~~~l~~w~~~~~-~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s-~d 91 (343)
.....+-++++| ++++|-+..... ..+ .|..|.+..+ .....+.... .......++.. ++.+|+++. .+
T Consensus 35 ~~~~Ps~l~~~~----~~~~LY~~~e~~~~~g--~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 35 EGENPSWLAVSP----DGRRLYVVNEGSGDSG--GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp ESSSECCEEE-T----TSSEEEEEETTSSTTT--EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCCCCceEEEEe----CCCEEEEEEccccCCC--CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC
Confidence 445566677777 777777776653 223 4557776443 2333333333 23344567776 777777776 48
Q ss_pred CcEEEEEccCceeeee----ecc-------CCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCc-eE--EEEEcC
Q 019258 92 GSLHVLSSAMQVLLSV----DEN-------SGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGG-EF--KRVYDG 154 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~----~~~-------~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~-~~--~~~~~~ 154 (343)
|.|.++++.....+.. ... .+.-....+++.++ +++++.+. ....|.+|+++... .+ ...+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999984322211 100 00112346788887 66666543 34479999987643 12 122222
Q ss_pred CCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccCCCCCee---EEeccc-CCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 155 NGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAGSGGPVL---QFKGNF-GSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~~-~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
......+.+.|+| +..+ ++.-.+++|.++++.. ....+. .+.... ...+. .....|+++|++++++++-.
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP--SDGSLTEIQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEEC
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc--cCCceeEEEEeeecccccccc--CCceeEEEecCCCEEEEEec
Confidence 3333789999999 4544 5555599999999983 122222 222111 00111 25889999999999998888
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+.+|.+|++......+.....- ......-+.+.++|++.. .++++-.++.|.+++.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~-------~~~G~~Pr~~~~s~~g~~---------l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTV-------PTGGKFPRHFAFSPDGRY---------LYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEE-------EESSSSEEEEEE-TTSSE---------EEEEETTTTEEEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEE-------eCCCCCccEEEEeCCCCE---------EEEEecCCCeEEEEEE
Confidence 88999999994322111211000 111233689999999884 4445557778888765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-06 Score=79.33 Aligned_cols=284 Identities=12% Similarity=0.088 Sum_probs=177.9
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC---CCCC----------CccCCCCCCeeEEEcc-
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA---SLTP----------HSQWTPPTRISSLSTS- 80 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~---~~~~----------~~~~~~~~~v~~v~~~- 80 (343)
+|..-+..++.|.. ...+++.|+.|+- |++..+..+. ..+. .+.-+|.+.|.-+.|.
T Consensus 11 iPnnvkL~c~~WNk----e~gyIAcgG~dGl-----LKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNK----ESGYIACGGADGL-----LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCCCceEEEEEEcc----cCCeEEeccccce-----eEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 45556789999999 7889999999974 5576663321 1111 1223688889999999
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-EEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR-VYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~-~~~~~~~ 157 (343)
....|-++..+|-|.+|-+-++.-..-.- ....+..|.+++|+ |..+..+-.||.|.+=.++.++ +.. -+.+.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~-- 157 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQ-- 157 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchh--
Confidence 66677777789999999886443211110 01245679999999 9999999999999987776642 221 11111
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCC-----CCeeEEecccCCCCCcccCeEEEEEc--------CCCCeE
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG-----GPVLQFKGNFGSQGKASGMIHSVDIH--------PSRKHT 223 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~--------p~~~~~ 223 (343)
....+.|++ ...++.+-..|.+.++|... +.. .+..+..+.... .+..|..+.|. |+. ..
T Consensus 158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl~~~c~Vn~tg~~s~---~~~kia~i~w~~g~~~~v~pdr-P~ 231 (1189)
T KOG2041|consen 158 -LLAHVLWSEDLEQALFKKANGETHLYDNQG-NFERKLEKDCEVNGTGIFSN---FPTKIAEIEWNTGPYQPVPPDR-PR 231 (1189)
T ss_pred -eccceeecccHHHHHhhhcCCcEEEecccc-cHHHhhhhceEEeeeeeecC---CCccccceeeccCccccCCCCC-CE
Confidence 355678888 66677777899999999643 000 111111111000 00224455554 343 46
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC---------
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG--------- 294 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--------- 294 (343)
++.+..+|.+.+---.+...|..+- . .-.+....|++++. .|+.|+.|.
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~d----------t--gm~~vgakWnh~G~----------vLAvcG~~~da~~~~d~n 289 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVD----------T--GMKIVGAKWNHNGA----------VLAVCGNDSDADEPTDSN 289 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEe----------c--ccEeecceecCCCc----------EEEEccCcccccCccccc
Confidence 7889999999988666656666654 2 25688899999887 688887653
Q ss_pred eEEEEecCCCcc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEPF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.|..+..-.... .+......|.++.|-+. |-.++-+ -++.||+-+
T Consensus 290 ~v~Fysp~G~i~gtlkvpg~~It~lsWEg~-gLriA~A-vdsfiyfan 335 (1189)
T KOG2041|consen 290 KVHFYSPYGHIVGTLKVPGSCITGLSWEGT-GLRIAIA-VDSFIYFAN 335 (1189)
T ss_pred eEEEeccchhheEEEecCCceeeeeEEcCC-ceEEEEE-ecceEEEEe
Confidence 233343322222 22233467999999873 3333333 356777654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-05 Score=72.10 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=163.3
Q ss_pred ceeccCCCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCC------CCCceeeeeCCCCCCCCCCccCCCCCCee
Q 019258 2 AITGVRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDA------DSPSLETHSISLPASLTPHSQWTPPTRIS 75 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~------~~~~l~~w~~~~~~~~~~~~~~~~~~~v~ 75 (343)
++=|..+--+++||.|+. |--+.++| ..++|||=|..... ..-.|.|||+-.......+..+..+..+.
T Consensus 234 ~lWGG~~f~r~~RF~Hp~-Vq~idfSP----~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W 308 (698)
T KOG2314|consen 234 ALWGGESFDRIQRFYHPG-VQFIDFSP----NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW 308 (698)
T ss_pred eeecCccHHHHHhccCCC-ceeeecCC----ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc
Confidence 344555666889999875 66788999 78899988754332 11358899996543333333322233333
Q ss_pred E-EEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe--C---CCcEEEEECCCCc
Q 019258 76 S-LSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG--E---DGRVNLVSVIGGG 146 (343)
Q Consensus 76 ~-v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s--~---dg~v~~wd~~~~~ 146 (343)
. ..|+ ++.++|--.. ..|.||+... +.+.......-..|..+.|+ +..|+-=. . -.++.+..+.+.+
T Consensus 309 P~frWS~DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 309 PIFRWSHDDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred ceEEeccCCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc
Confidence 2 4577 5555554444 5799998874 22222222344578888888 33333211 1 1234455554442
Q ss_pred eEEEEEcCCCccceEEE--EeCC-CCEEE----------EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 147 EFKRVYDGNGLVGFNCV--KWAS-PTEFV----------TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~--~~~~-~~~l~----------t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
.++.. .-+ .|..+ .|-. +.+|. +.+.-..+.|+.+|. ..-|+..+... ..|..
T Consensus 385 ~iRt~-nlf---nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--KdIpve~velk--------e~vi~ 450 (698)
T KOG2314|consen 385 EIRTK-NLF---NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--KDIPVEVVELK--------ESVIA 450 (698)
T ss_pred eeeec-cce---eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec--cCCCceeeecc--------hheee
Confidence 22211 111 12222 2222 22222 223334567777777 23344333322 67999
Q ss_pred EEEcCCCCeEEEEEec--CCcEEEEEccC-CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 214 VDIHPSRKHTCLAGGS--SGTVFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~--dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
.+|.|.|....+..+. ..++.+|-+.+ ...+..+. ..-....+.|.|+|.+.. ++.+
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk----------~~dk~~~N~vfwsPkG~f----------vvva 510 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK----------ELDKKFANTVFWSPKGRF----------VVVA 510 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh----------hhcccccceEEEcCCCcE----------EEEE
Confidence 9999998654433333 33588888773 33332222 223355788999999984 4433
Q ss_pred ---ecCCeEEEEecCCCc--ccccccccccceeeecCCCCCeeEEccCCc
Q 019258 291 ---SEDGILAVVEQGEEP--FELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 291 ---s~dg~i~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
|..|.+..+|..... ..-..++...+.+.|+| .|.|++++++..
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~w 559 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSSSW 559 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccccccceECC-CCCEEEEeeehh
Confidence 567788888876422 22233467789999999 789999887653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-05 Score=73.98 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=128.0
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC-CC--cEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL-SG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~-dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
.|++++...... .........+.+..|+ +++.|+..+. ++ .|.++++..++...+... .+......|+
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECC
Confidence 566777744322 1223456678899999 7777776554 33 477777765443322221 1223456777
Q ss_pred -CCEEE-EEeCCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCc--EEEEEccccCCCCCeeE
Q 019258 125 -GSECV-SVGEDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYG--LQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 125 -~~~~~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~--i~iwd~~~~~~~~~~~~ 196 (343)
++.++ +.+.+|. |.++|+.+++ ..++..... ......|+| +..++..+. ++. |.++|+.. + ....
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~---g-~~~~ 344 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS---G-KVSR 344 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCC---C-CEEE
Confidence 77665 4566775 7777887763 444433222 356788999 565655543 444 55556654 3 2333
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT 274 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 274 (343)
+.... ......+|+|++..++++...++. |.++|+..+.. ..+. .. .......|+|++
T Consensus 345 Lt~~g-------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt----------~~--~~d~~ps~spdG 404 (448)
T PRK04792 345 LTFEG-------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLT----------ST--RLDESPSVAPNG 404 (448)
T ss_pred EecCC-------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEcc----------CC--CCCCCceECCCC
Confidence 32111 223456899999888777666664 55567766432 2221 11 111234799998
Q ss_pred CCCcCCCCCccceEEEecCCe--EEEEecCCCccccccc-ccccceeeecC
Q 019258 275 KSSNISSSRVLPAMFCSEDGI--LAVVEQGEEPFELLAE-PCAINSFDIDP 322 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~--i~~~~~~~~~~~~~~~-~~~i~s~~~~~ 322 (343)
.. .+++...+|. |++++........+.. ...+...+|+|
T Consensus 405 ~~---------I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 405 TM---------VIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CE---------EEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 84 3444444553 6777765443333333 33456666665
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-05 Score=71.50 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+++.+++++.+|.+..+|..+++.+-.... .+.+.+ ....++.++.++.+|.|..||.++++...+. .....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~-- 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTY-SRVTP-- 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEE-ccCCC--
Confidence 467888899999999999876554322111 112221 1223677888888999999999988543333 22111
Q ss_pred eEEEE--eCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe----EEEEEcCCCCeEEEEEecC
Q 019258 160 FNCVK--WAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI----HSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 160 v~~~~--~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~v~~~p~~~~~~~sg~~d 230 (343)
...+. -.| .+.++.+..++.+..+|+++ ++.+.+............... .+..+. +. .+..++.+
T Consensus 177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~t---G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~ 250 (377)
T TIGR03300 177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQT---GQPLWEQRVALPKGRTELERLVDVDGDPVVD--GG-QVYAVSYQ 250 (377)
T ss_pred ceeecCCCCCEEECCEEEEECCCCEEEEEEccC---CCEeeeeccccCCCCCchhhhhccCCccEEE--CC-EEEEEEcC
Confidence 11110 011 45677888899999999988 655544321110000000000 011111 23 34567889
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
|.++.||.++++...... . ........ .+. .++.++.||.|+.++.... ..+-.
T Consensus 251 g~l~a~d~~tG~~~W~~~------------~-~~~~~p~~--~~~----------~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD------------A-SSYQGPAV--DDN----------RLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CEEEEEECCCCcEEEeec------------c-CCccCceE--eCC----------EEEEECCCCeEEEEECCCCcEEEcc
Confidence 999999998875544332 0 11111222 233 6788889999999987532 23322
Q ss_pred cc--ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 310 AE--PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 310 ~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. .....+..+.+ ..|+.++.++.+++++.
T Consensus 306 ~~~~~~~~ssp~i~g---~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 306 DELKYRQLTAPAVVG---GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccccCCccccCEEEC---CEEEEEeCCCEEEEEEC
Confidence 11 12234444443 68888888999998864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=85.16 Aligned_cols=245 Identities=11% Similarity=0.104 Sum_probs=157.9
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce------------eeeeeccCCccccCeEEEEec--CCEEEEE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV------------LLSVDENSGFHVGPISGVDLT--GSECVSV 131 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~------------~~~~~~~~~~h~~~v~~~~~~--~~~~~s~ 131 (343)
.++.+....++.|. +..+++.|+.||.+++..+.+.. .+.......+|.+.|.-+.|+ .+.+-+.
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence 35667788999999 88999999999999999886211 123333455799999999999 6778888
Q ss_pred eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcc
Q 019258 132 GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKAS 208 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~ 208 (343)
..+|.|.+|-+-.+.-+..++.....+.|.+++|+. +..+...-.||.|.+=.+.. ..+.. +++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----NRIwgKeLkg--------- 156 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----NRIWGKELKG--------- 156 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----ceecchhcch---------
Confidence 899999999987765444444444444789999998 88888888899888765543 22221 221
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc-------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCC
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ-------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
.....+.|+++...+ +.+-.+|.+.++|....- ..+...+.- ......|-.+.|... +. ....
T Consensus 157 ~~l~hv~ws~D~~~~-Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~-------s~~~~kia~i~w~~g-~~-~~v~ 226 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQA-LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF-------SNFPTKIAEIEWNTG-PY-QPVP 226 (1189)
T ss_pred heccceeecccHHHH-HhhhcCCcEEEecccccHHHhhhhceEEeeeeee-------cCCCccccceeeccC-cc-ccCC
Confidence 225577889986544 457788999999974321 111111100 111223556666511 10 0111
Q ss_pred CCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCC
Q 019258 282 SRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 282 ~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
-..|.|+.|-+.|++.+.+.-.. ...+...+-.+...-|+++..-..+||.+.
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 11127999999999988765332 223344456677788888433344566543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=76.15 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=107.0
Q ss_pred EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc
Q 019258 25 RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ 102 (343)
Q Consensus 25 ~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~ 102 (343)
.|.+..++++++++.+..++. ..+.++.+... .++......+..-+++.|. +......+-.-|.++-+++-..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~-----~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQ-----RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCc-----eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 455555568888887754432 33555533222 3444444555556666666 4444555555555555554321
Q ss_pred eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcE
Q 019258 103 VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGL 180 (343)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i 180 (343)
.. ...+..-+|-.-++.+.++ ++.++++..|..|++-.....-......-+|.. -|..++.-++..|+++|.|++|
T Consensus 140 ~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-FVS~isl~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 140 DS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-FVSTISLTDNYLLLSGSGDKTL 217 (390)
T ss_pred cc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-heeeeeeccCceeeecCCCCcE
Confidence 11 1112223699999999999 888999999999999777654333444455665 7889998888889999999999
Q ss_pred EEEEccccCCCCCeeEEe
Q 019258 181 QWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~ 198 (343)
++||.++ ++.+.++.
T Consensus 218 r~Wd~~s---gk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITS---GKLLDTCD 232 (390)
T ss_pred EEEeccc---CCcccccc
Confidence 9999999 77776554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-06 Score=80.92 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=134.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
++..++.|+-...+..+|++...+..... ...+.|+=+..++..+.+|...|+|.+-|.++.+ +...+..|.. .+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~---v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~-si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN---VSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSG-SI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee---ccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeecccc-ce
Confidence 56677788777788888888554443332 2233577788789999999999999999999984 6777777776 67
Q ss_pred EEEEeCCCCEEEEEeC---------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 161 NCVKWASPTEFVTGGF---------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.++... ++.|+++|. |.-|++||+|+ -+.+..+..+. + -.-+.|+|.=...++..+..|
T Consensus 221 SDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRm---mral~PI~~~~-------~-P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 221 SDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRM---MRALSPIQFPY-------G-PQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred eeeecc-CCeEEEeecccccccccccchhhhhhhhh---hhccCCccccc-------C-chhhhhcccccceEEEEeccc
Confidence 766533 778888876 55689999998 55555444333 2 245778888777788899999
Q ss_pred cEEEEE---ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 TVFAWD---LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ~v~iwd---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.+-| +.++....... ......+.++.+++.+. .++.+-.+|.|-+|....
T Consensus 289 q~q~vd~~~lsNP~~~~~~v----------~p~~s~i~~fDiSsn~~----------alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMV----------NPNGSGISAFDISSNGD----------ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred ceeeccccccCCCccceeEE----------ccCCCcceeEEecCCCc----------eEEEecccCcEeeecCCC
Confidence 999999 44332222222 22345589999999887 799999999999997543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=79.60 Aligned_cols=128 Identities=11% Similarity=0.176 Sum_probs=94.6
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCc-e--eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEE
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQ-V--LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNL 139 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~-~--~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~ 139 (343)
.+...+.|.++.|. .+++++.|..+|.|..+|++.. + .-..... .|...|++++.. +..+++.+.+|+|++
T Consensus 248 sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 248 SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeE
Confidence 45667899999999 7899999999999999999822 1 1111111 388889998765 889999999999999
Q ss_pred EECCCCc--eEEEEEcCCCcc-ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 140 VSVIGGG--EFKRVYDGNGLV-GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 140 wd~~~~~--~~~~~~~~~~~~-~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
||.+--+ .-...+++|... ...-+..++ ...++++++|-..|||.++. ++.+.++..
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~---ghLl~tipf 386 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS---GHLLCTIPF 386 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc---CceeeccCC
Confidence 9997642 235666766431 122233345 77899999999999999998 777776553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-05 Score=70.95 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=119.5
Q ss_pred ceeeEEecCCCCCCCCe--EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC-CC--c
Q 019258 20 YIDAVRWLPPLSPLSKL--AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL-SG--S 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~--l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~-dg--~ 93 (343)
.+..=+|+| +++. ++-.|+.+ ++..|++.++.... ...+. ..++......|+ +++.|+..+. +| .
T Consensus 186 ~~~sP~wSP----DG~~~~~~y~S~~~--g~~~I~~~~l~~g~-~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 186 LSITPTWMH----IGSGFPYLYVSYKL--GVPKIFLGSLENPA-GKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred CcccceEcc----CCCceEEEEEEccC--CCceEEEEECCCCC-ceEee--cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 345668999 7654 32234332 23457788885432 22222 244555678899 7777766543 33 2
Q ss_pred --EEEEEccCc---eeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEE--CCC-CceEEEEEcCCCccceEE
Q 019258 94 --LHVLSSAMQ---VLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVS--VIG-GGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 94 --v~v~~~~~~---~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd--~~~-~~~~~~~~~~~~~~~v~~ 162 (343)
+.+|++... ....+.. .+.+......|+ |+.++..+ .+|...+|. +.. +.....+.. ... .+..
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~---~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~-~~~~ 331 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLN---EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYR-NSSC 331 (428)
T ss_pred eeEEEeecccCCCCcceEeec---CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCC-Cccc
Confidence 333555421 1122221 122234566787 77777655 567666664 432 222333322 222 4678
Q ss_pred EEeCC-CCEEEEEeCC---CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC--CcEEEE
Q 019258 163 VKWAS-PTEFVTGGFG---YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS--GTVFAW 236 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d--g~v~iw 236 (343)
..|+| ++.++..+.+ ..|.+||+.. ++ ...+.... ..+....|+|++..+++++..+ ..|+++
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~---g~-~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLAT---GR-DYQLTTSP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCC---CC-eEEccCCC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 89999 7667666543 4689999976 33 33333221 3466789999998877665543 458888
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
|+..+. ...+. ...+.+...+|+|.
T Consensus 401 dl~~g~-~~~Lt-----------~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKK-TRKIV-----------IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCC-EEEee-----------cCCCcccCceecCC
Confidence 887643 22222 12344566777764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0001 Score=75.28 Aligned_cols=251 Identities=11% Similarity=0.111 Sum_probs=145.0
Q ss_pred EEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeec-cCC---------ccccCeEEEEec--CCEEEEE-eCCCcEEEE
Q 019258 76 SLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDE-NSG---------FHVGPISGVDLT--GSECVSV-GEDGRVNLV 140 (343)
Q Consensus 76 ~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~-~~~---------~h~~~v~~~~~~--~~~~~s~-s~dg~v~~w 140 (343)
.+++. ++.++++-+.++.|++++........+.. ... .+...-..+.++ ++.++.+ ...+.|+.+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 45554 45677777788899999876332211111 000 011223667776 5555444 456789999
Q ss_pred ECCCCceEEEEEcCC-------C--------ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc--
Q 019258 141 SVIGGGEFKRVYDGN-------G--------LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-- 201 (343)
Q Consensus 141 d~~~~~~~~~~~~~~-------~--------~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 201 (343)
|..++. +..+.... . ......+++++ +..+++.+.+++|++||... + .+..+.+..
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~---g-~v~~~~G~G~~ 726 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD---G-VTRVFSGDGYE 726 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC---C-eEEEEecCCcc
Confidence 987762 33332110 0 01246788888 44567777799999999866 2 222222110
Q ss_pred ----CCC--CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec----------CCCCcccccCCccccE
Q 019258 202 ----GSQ--GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG----------VGTGEAVTHSLSESEV 265 (343)
Q Consensus 202 ----~~~--~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v 265 (343)
+.. ...-.....|+++|++..++++.+.+++|++||+.++......-+ .+..+.......-..-
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 000 000033567999999887888888999999999976442111100 0000000000001123
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc--------------ccccceeeecCCCCCeeEE
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE--------------PCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~--------------~~~i~s~~~~~~~~~~l~~ 330 (343)
..|++++++. .+++-+.+++|++|+..... ..+... -.....+++++ +|+.+|+
T Consensus 807 ~Gvavd~dG~----------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVa 875 (1057)
T PLN02919 807 LGVLCAKDGQ----------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVA 875 (1057)
T ss_pred ceeeEeCCCc----------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEE
Confidence 5788888876 67788889999999975332 221111 12356788888 5688888
Q ss_pred ccCCceEEEEeC
Q 019258 331 SLEWESIAIVSR 342 (343)
Q Consensus 331 ~~~~~~i~~~~~ 342 (343)
-+.+..|++|+.
T Consensus 876 Dt~Nn~Irvid~ 887 (1057)
T PLN02919 876 DTNNSLIRYLDL 887 (1057)
T ss_pred ECCCCEEEEEEC
Confidence 888899999863
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-05 Score=69.09 Aligned_cols=221 Identities=11% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcc-c-cCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc--CCC
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH-V-GPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD--GNG 156 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~ 156 (343)
.++.++.++.+|.+..||..+++.+-........ . ....+....+..++.+..+|.+..+|.++++...+... ...
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 3567888888999999998765543222111000 0 00011112256778888899999999988753322111 000
Q ss_pred ccc---eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LVG---FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~~---v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
... ...+.-.| ++.++.++.++.+..+|..+ ++.+...... . ....... +..+ ..++.|
T Consensus 224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~~~--------~-~~~p~~~--~~~v-yv~~~~ 288 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS---GRVLWKRDAS--------S-YQGPAVD--DNRL-YVTDAD 288 (377)
T ss_pred CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC---CcEEEeeccC--------C-ccCceEe--CCEE-EEECCC
Confidence 000 11111112 56788888999999999988 6655544311 1 1122222 3344 567889
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~ 309 (343)
|.+..+|..+++....... ........... .+. .++.++.+|.|+.++... +..+.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~----------~~~~~~ssp~i--~g~----------~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDE----------LKYRQLTAPAV--VGG----------YLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CeEEEEECCCCcEEEcccc----------ccCCccccCEE--ECC----------EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 9999999988755443321 00111111112 223 688899999999998753 333333
Q ss_pred cccc-c-cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AEPC-A-INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~~~-~-i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+. . ..+-.+.+ +.|+.+++++.||.|.
T Consensus 347 ~~~~~~~~~sp~~~~---~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 347 KTDGSGIASPPVVVG---DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EcCCCccccCCEEEC---CEEEEEeCCceEEEeC
Confidence 2222 2 33434444 5688888899999873
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00028 Score=62.67 Aligned_cols=252 Identities=13% Similarity=0.044 Sum_probs=134.6
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEee---------cCCCCCCceeeeeCCCCCCCCCCccCCCCC--------Ce
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY---------DTDADSPSLETHSISLPASLTPHSQWTPPT--------RI 74 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~---------D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~--------~v 74 (343)
+-.++.++.-..+ .+| +++.+..+.. +.+ .|.+||..+ .+....++.+. ..
T Consensus 40 ~g~i~~G~~P~~~-~sp----Dg~~lyva~~~~~R~~~G~~~d----~V~v~D~~t---~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 40 LGMTDGGFLPNPV-VAS----DGSFFAHASTVYSRIARGKRTD----YVEVIDPQT---HLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEEEEccCCCcee-ECC----CCCEEEEEeccccccccCCCCC----EEEEEECcc---CcEEeEEccCCCchhhccCcc
Confidence 3444545544544 666 7766666654 322 478999955 22233333322 23
Q ss_pred eEEEcc-CCCeEEEEc-C-CCcEEEEEccCceeeeeeccCCccccCeEEE-EecCCEEEEEeCCCcEEEEECCC-CceE-
Q 019258 75 SSLSTS-HQSLVAAST-L-SGSLHVLSSAMQVLLSVDENSGFHVGPISGV-DLTGSECVSVGEDGRVNLVSVIG-GGEF- 148 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s-~-dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~s~s~dg~v~~wd~~~-~~~~- 148 (343)
..+.++ ++++|++.. . +..|.+.|+...+.+..... ..+..+ ......+..-+.||......++. ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----CCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 366667 777787766 3 68999999986554433322 111111 12233344445666655544433 2111
Q ss_pred --EEEEcCCCccceEEE-EeCC-CCEEEEEeCCCcEEEEEccccCC--CCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 149 --KRVYDGNGLVGFNCV-KWAS-PTEFVTGGFGYGLQWWDLRRAGS--GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 149 --~~~~~~~~~~~v~~~-~~~~-~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
..++..... .+..- .|.+ .+..+-.+..|+|.+-|+..... ..++..+.......+.+++.+.-++++|++..
T Consensus 183 ~~~~vf~~~~~-~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 183 KPTEVFHPEDE-YLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred eeeeeecCCcc-ccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111111000 01000 2344 33444445559999999754000 12222222211112344455666999999988
Q ss_pred EEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ec
Q 019258 223 TCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SE 292 (343)
Q Consensus 223 ~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~ 292 (343)
+++.... .+.|.++|.++.+....+. -...++.|+++|++.. .|+.. ..
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------------vG~~~~~iavS~Dgkp---------~lyvtn~~ 320 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------------LGHEIDSINVSQDAKP---------LLYALSTG 320 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------------CCCceeeEEECCCCCe---------EEEEeCCC
Confidence 8764321 2479999998855444443 2357899999999873 45544 46
Q ss_pred CCeEEEEecC
Q 019258 293 DGILAVVEQG 302 (343)
Q Consensus 293 dg~i~~~~~~ 302 (343)
++.|.++|..
T Consensus 321 s~~VsViD~~ 330 (352)
T TIGR02658 321 DKTLYIFDAE 330 (352)
T ss_pred CCcEEEEECc
Confidence 8889998864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=73.38 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=97.2
Q ss_pred eEEEcc-CCCeEEEEcCCCcEEEEEccCcee-eeeeccCCccccCeEEEEec--CCE---EEEEeCCCcEEEEECCCCce
Q 019258 75 SSLSTS-HQSLVAASTLSGSLHVLSSAMQVL-LSVDENSGFHVGPISGVDLT--GSE---CVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~-~~~~~~~~~h~~~v~~~~~~--~~~---~~s~s~dg~v~~wd~~~~~~ 147 (343)
..+.++ .+.+++++..+....++++..... ........ -...-+++.+. ... ....++...+.+|....+ .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-R 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-C
Confidence 333444 667788888888777887763222 21111100 11122333333 222 223455556666666554 2
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
...+ -+|-+ .+++++++| +..++|+..|..|++-.... ...+..+ .+|. ..|..+++-++. .++
T Consensus 144 ~~~~-lGhvS-ml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~-------eFVS~isl~~~~--~Ll 209 (390)
T KOG3914|consen 144 CEPI-LGHVS-MLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFCLGHK-------EFVSTISLTDNY--LLL 209 (390)
T ss_pred cchh-hhhhh-hhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhccccH-------hheeeeeeccCc--eee
Confidence 3333 35555 799999999 88999999999999976644 3444443 3454 789999998863 478
Q ss_pred EEecCCcEEEEEccCCcee
Q 019258 226 AGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~ 244 (343)
+|+.|+++++||++++..+
T Consensus 210 S~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCCcEEEEecccCCcc
Confidence 9999999999999997654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-05 Score=67.98 Aligned_cols=228 Identities=13% Similarity=0.119 Sum_probs=123.1
Q ss_pred cccceeeEEecCCCCCCCC-eEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSK-LAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~-~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
++..|..++++| .++ ++..+|.++. |++.|+... .+..+......+++++|. +...+.+|-.+|.
T Consensus 192 ~g~~IrdlafSp----~~~GLl~~asl~nk-----iki~dlet~---~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 192 EGSFIRDLAFSP----FNEGLLGLASLGNK-----IKIMDLETS---CVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cchhhhhhccCc----cccceeeeeccCce-----EEEEecccc---eeeeheeccCCceeeeeccCCcceeEEeccCce
Confidence 557799999999 554 7888888864 669998542 234444555899999999 6678999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--------CCEEEEEeCCCcEEEEECCCCc-eEEE--EEcCCCccceEE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--------GSECVSVGEDGRVNLVSVIGGG-EFKR--VYDGNGLVGFNC 162 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~s~s~dg~v~~wd~~~~~-~~~~--~~~~~~~~~v~~ 162 (343)
|.+||++..+..........-..+|..++.- +..++..+.+ +..|.+.-.. .... -.+..+ .+.+
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG--~cis 335 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG--ICIS 335 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc--ceee
Confidence 9999998544332111111122344444432 4444444443 4556553210 1111 112222 4667
Q ss_pred EEeCC-CCE-EEEEeCC------CcEEE-EEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 163 VKWAS-PTE-FVTGGFG------YGLQW-WDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 163 ~~~~~-~~~-l~t~~~d------~~i~i-wd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
+++++ ++. +++.-.+ ..+-. -|.+. +.++.... .+.+........-..+.-.++...++..|.+...
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d---G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD---GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeecccc---CceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 77777 333 3333221 11111 12222 33333221 1101000000111122223334566667777888
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+.+||.++.+....+. -..+|.+++....+.
T Consensus 413 lil~D~~s~evvQ~l~------------~~epv~Dicp~~~n~ 443 (463)
T KOG1645|consen 413 LILQDPHSFEVVQTLA------------LSEPVLDICPNDTNG 443 (463)
T ss_pred eEEeccchhheeeecc------------cCcceeecceeecCC
Confidence 9999999876655554 357888888875543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=77.59 Aligned_cols=276 Identities=13% Similarity=0.100 Sum_probs=163.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC--CCCC---CCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP--ASLT---PHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~--~~~~---~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.|.++|.++.-.. +.+-|+++|.|++ +++|++..+ +... ..+...|..+|.++.|. +.+.+ ++
T Consensus 733 GH~~~iRai~Aid----NENSFiSASkDKT-----VKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~S 801 (1034)
T KOG4190|consen 733 GHQEKIRAIAAID----NENSFISASKDKT-----VKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--AS 801 (1034)
T ss_pred CcHHHhHHHHhcc----cccceeeccCCce-----EEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--ee
Confidence 4677777777666 6778999999976 559998432 2221 23345688899999998 43444 45
Q ss_pred CCCcEEEEEccCceeeeeeccCCccc--cCeEEEEec-CCEE-EEEeCCCcEEEEECCCCceEEE--EEc--CCCccceE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHV--GPISGVDLT-GSEC-VSVGEDGRVNLVSVIGGGEFKR--VYD--GNGLVGFN 161 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~~~~~~-~~~~-~s~s~dg~v~~wd~~~~~~~~~--~~~--~~~~~~v~ 161 (343)
.||-|++||--.++.+....+...|. +.|.++.-- ...+ +-|+...+|+++|.+.....-. +.. .+.. .+.
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna-~~R 880 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA-LTR 880 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch-hee
Confidence 78889999976444443333332232 344454432 3333 3457899999999987543222 221 1222 588
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE-EEcc
Q 019258 162 CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA-WDLR 239 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i-wd~~ 239 (343)
+++..+ ++.++++-..|.|.+.|.|+ +..+......++ ....++ .|..+ .++....|.++.+ |-.-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~---G~vINswrpmec-------dllqla-apsdq-~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARN---GKVINSWRPMEC-------DLLQLA-APSDQ-ALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCC---CceeccCCcccc-------hhhhhc-CchhH-HHHhhcccceeEeeehhc
Confidence 898888 88999999999999999999 776655543331 122222 24433 3456667788887 7644
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEe-ecCCCCcCCCCCccceEEEecCCeEEEEecCCCc------cccccc-
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD-CHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------FELLAE- 311 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------~~~~~~- 311 (343)
.+....... ..+...| |- .-++ -++++.....+.+|....+. ..+.++
T Consensus 949 dgimh~q~k------pppepah--------flqsvgp----------SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~ 1004 (1034)
T KOG4190|consen 949 DGIMHLQDK------PPPEPAH--------FLQSVGP----------SLVTAQNGNILGVYADSAELHAESTITKIRPDE 1004 (1034)
T ss_pred CCeeeeccC------CCCcchh--------hhhccCc----------eeEEeccCcEEEEEecchhhhhhhhhccccccc
Confidence 322211111 0001111 11 1233 46777777777777543221 112222
Q ss_pred -ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 312 -PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 312 -~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+....+++.-|=+ .-.+.|++.|.|.+.
T Consensus 1005 f~G~lTala~LPLN-~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1005 FPGTLTALAPLPLN-CAFLAGNEHGAIALL 1033 (1034)
T ss_pred cCCccceeeecccc-chhhccCCCCceeec
Confidence 3557777777733 555678888888753
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-06 Score=73.62 Aligned_cols=213 Identities=11% Similarity=0.008 Sum_probs=138.5
Q ss_pred ccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CCcEEEEEC
Q 019258 66 SQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DGRVNLVSV 142 (343)
Q Consensus 66 ~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg~v~~wd~ 142 (343)
.++-|...|+-+.....+++.+++.||+++.|.-.....+.+......|.+.+.++..+ +-.+.|.+. |..++++|+
T Consensus 4 ksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred hhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 35678888888877778999999999999999876544555565556788889888888 667778777 999999999
Q ss_pred CCCceE--EEEEcCCCccceEEEEeCCC--CEEEEE--eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 143 IGGGEF--KRVYDGNGLVGFNCVKWASP--TEFVTG--GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
++-..+ ..+...+.. + +.-..++ ..+++. -.++.+.++|-+. ...++.-++.. |..+|.++.+
T Consensus 84 En~DminmiKL~~lPg~--a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~fkkl------H~sPV~~i~y 152 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGF--A-EWVTSKGDKISLIAVSLFKSGKIFVVDGFG--DFCQDGYFKKL------HFSPVKKIRY 152 (558)
T ss_pred eccchhhhcccccCCCc--e-EEecCCCCeeeeEEeecccCCCcEEECCcC--CcCccceeccc------ccCceEEEEe
Confidence 874321 222222221 2 1112222 123333 3489999999987 33344333322 3388999999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccC-CceeeeeecCCCC---cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRW-QQQSIVLSGVGTG---EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~-~~~~~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
.|.+. .+++....|.|..|.... .+.|......... ...--........++.|+|++. ++.+-+.
T Consensus 153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~----------qistl~~ 221 (558)
T KOG0882|consen 153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA----------QISTLNP 221 (558)
T ss_pred ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC----------cccccCc
Confidence 99875 456788889999998762 1222221100000 0000012244567899999988 6888889
Q ss_pred CCeEEEEe
Q 019258 293 DGILAVVE 300 (343)
Q Consensus 293 dg~i~~~~ 300 (343)
|..|++..
T Consensus 222 DrkVR~F~ 229 (558)
T KOG0882|consen 222 DRKVRGFV 229 (558)
T ss_pred ccEEEEEE
Confidence 99988755
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00055 Score=68.93 Aligned_cols=236 Identities=12% Similarity=0.004 Sum_probs=141.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCC-CCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---C
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDAD-SPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---S 91 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~-~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---d 91 (343)
..+.-..|.|.. |+.+||+.+.+...+ .-.+++|+-++.... .. -+-.+--.+++|. .++++++... .
T Consensus 208 ~dd~~~~ISWRG----DG~yFAVss~~~~~~~~R~iRVy~ReG~L~s--tS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 208 WDDGRVRISWRG----DGEYFAVSSVEPETGSRRVIRVYSREGELQS--TS-EPVDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred cCCCceEEEECC----CCcEEEEEEEEcCCCceeEEEEECCCceEEe--cc-ccCCCccCCccCCCCCCEEEEEEEcCCC
Confidence 455677899999 999999999876655 456899998542111 11 1233344577887 6777777654 3
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCCCccceEEEEeCC-
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~- 167 (343)
..|..|+-+..+.-.+.-........|..+.|+ +..|+..-.|. |.+|-..+-. ...+.+.......+..+.|+|
T Consensus 281 ~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 466667655222111111111245689999999 66666655554 9999988753 222223323322456699999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee--
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS-- 244 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~-- 244 (343)
+..|...+.++.+..+++.- ....+. ...|++..++++ =+..++++-+++..--|
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~-------~v~~s~--------------~~~~~D~g~vaV-IDG~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAW-------DVSRSP--------------GSSPNDNGTVAV-IDGNKLLLTPFRRAVVPPP 417 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEE-------EEEecC--------------CCCccCceEEEE-EeCCeEEEecccccCCCch
Confidence 66788888778888877644 001100 011222222222 22235777777664332
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
..... -.....|.+++|++++. .++.-..||.|.+|..
T Consensus 418 Ms~~~---------l~~~~~v~~vaf~~~~~----------~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 418 MSSYE---------LELPSPVNDVAFSPSNS----------RFAVLTSDGSLSIYEW 455 (928)
T ss_pred HhceE---------EcCCCCcEEEEEeCCCC----------eEEEEECCCCEEEEEe
Confidence 22221 12467899999999876 5888899999888774
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=75.75 Aligned_cols=179 Identities=13% Similarity=0.153 Sum_probs=125.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
+..++-|+....+..+|+++.+ ..+...-... .+.-++.+ +..+.+|...|+|.+-|+++ .+.+.++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~-~v~imR~N-nr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs--- 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSAS-GVTIMRYN-NRNLFCGDTRGTVFLRDPNS---FETIHTFDAHS--- 217 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCC-ceEEEEec-CcEEEeecccceEEeecCCc---Cceeeeeeccc---
Confidence 4566777777778888988874 3333322222 46666644 45688888899999999999 88999999887
Q ss_pred CCcccCeEEEEEcCCCCeEEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 205 GKASGMIHSVDIHPSRKHTCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+.|..++.+- +++++++. |.-|++||+|..+....+. .+.++ .=+.|+|.-.
T Consensus 218 ----~siSDfDv~G---NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-----------~~~~P-~flrf~Psl~ 278 (1118)
T KOG1275|consen 218 ----GSISDFDVQG---NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-----------FPYGP-QFLRFHPSLT 278 (1118)
T ss_pred ----cceeeeeccC---CeEEEeecccccccccccchhhhhhhhhhhccCCcc-----------cccCc-hhhhhccccc
Confidence 6788777653 45566664 5568999999865433322 12222 3478899888
Q ss_pred CCcCCCCCccceEEEecCCeEEEEec---CCCc-cccccc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQ---GEEP-FELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~---~~~~-~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .++.+|..|.....+. ...+ ...+.+ ..-+.+||+++ +|+.++-|...+.|.+|.
T Consensus 279 t---------~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 T---------RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c---------eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeec
Confidence 7 8999999999888773 2221 122222 34499999999 679999999999999985
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=67.46 Aligned_cols=256 Identities=12% Similarity=0.118 Sum_probs=155.1
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc---------
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS--------- 80 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~--------- 80 (343)
.+..-++...-+++.|+| +.++|-||.. .+-+-|. -....+..++ |...|+.+.|.
T Consensus 8 tlpG~l~~sN~~A~Dw~~-----~GLiAygshs------lV~VVDs---~s~q~iqsie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSP-----SGLIAYGSHS------LVSVVDS---RSLQLIQSIELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred cCCCCCCcccccccccCc-----cceEEEecCc------eEEEEeh---hhhhhhhccccCccceeEEEeccCCCchhcc
Confidence 444555556688999999 5577777654 2223333 1122333444 45789999997
Q ss_pred C-C---CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----C-CEEEEEeCCCcEEEEECCCCceEEE
Q 019258 81 H-Q---SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----G-SECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 81 ~-~---~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~-~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
. + -+|+++.-.|.|.+||.... ....+...|..++-.++|. . ..++.-....++.+|+..+|.+..+
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 1 1 13566666899999998732 2223334577888888886 2 5677778888999999999865544
Q ss_pred EEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccC-CCCCeeEEecccCCCC-------C-----------ccc
Q 019258 151 VYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAG-SGGPVLQFKGNFGSQG-------K-----------ASG 209 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~-------~-----------~~~ 209 (343)
.-..+. ...|+.+.| ...+..-+..|.+.+-+.-... +..+.+.+.-...+.. . ...
T Consensus 151 ~~ys~~--iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 151 YDYSHE--ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred cccCCc--ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 433343 477899988 5566666777877777653311 1112222211110000 0 000
Q ss_pred ---CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 210 ---MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 210 ---~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..-.++|+|.-+++++. .....+.++|++- ++..... ..-.+.+.=+.+-|+.+. + .
T Consensus 229 fity~a~faf~p~~rn~lfi-~~prellv~dle~-~~~l~vv----------pier~~akfv~vlP~~~r-----d---~ 288 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFI-TFPRELLVFDLEY-ECCLAVV----------PIERGGAKFVDVLPDPRR-----D---A 288 (1062)
T ss_pred HHHHHHhhhcChhhhceEEE-EeccceEEEcchh-hceeEEE----------EeccCCcceeEeccCCCc-----c---e
Confidence 01135678887777654 5567899999976 4444433 223455556777776543 1 5
Q ss_pred eEEEecCCeEEEEecCCCc
Q 019258 287 AMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~~~~ 305 (343)
|+..=.||.+.+|...+++
T Consensus 289 LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEEecCCeEEEEEeeccC
Confidence 6777899999999776544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=49.31 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=30.0
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~----------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGN----------FLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSS----------EEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccc----------cceeeCCCCEEEEEC
Confidence 67999999999999977 899999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=67.08 Aligned_cols=283 Identities=14% Similarity=0.136 Sum_probs=156.5
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC------CCCCeeEEEcc-CCCeEEEEcC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT------PPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~------~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
...+...+|.+. .+.-++++++... ...+.+...........+.+++ ..+.|.++.|. +...++.+..
T Consensus 21 ~~~~~~~~~d~~--sd~i~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~ 95 (928)
T PF04762_consen 21 DLPITATAFDSD--SDSIYFVLGPNEI---DYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALA 95 (928)
T ss_pred ccccceEEEecC--CCeEEEEECCCCc---ceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEEC
Confidence 346777788882 1233344443321 1223344332222122233332 34689999998 8888999999
Q ss_pred CCcEEEEEccC---ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC------------C-C-ceEE--
Q 019258 91 SGSLHVLSSAM---QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI------------G-G-GEFK-- 149 (343)
Q Consensus 91 dg~v~v~~~~~---~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~------------~-~-~~~~-- 149 (343)
+|.|.++.... ...+.+. ..-...|.+++|+ ++.++.+..++++.+.+-. . + .+..
T Consensus 96 ~Gdi~~~~~~~~~~~~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 96 SGDIILVREDPDPDEDEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred CceEEEEEccCCCCCceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 99999994321 1112221 1234689999999 7778888888888775420 0 0 0000
Q ss_pred ------EEEcC------------------------CCccceEEEEeCC-CCEEEEEeC------CCcEEEEEccccCCCC
Q 019258 150 ------RVYDG------------------------NGLVGFNCVKWAS-PTEFVTGGF------GYGLQWWDLRRAGSGG 192 (343)
Q Consensus 150 ------~~~~~------------------------~~~~~v~~~~~~~-~~~l~t~~~------d~~i~iwd~~~~~~~~ 192 (343)
..+.+ .+. .-..++|-. +.+|+..+. -+.+|+|+-. +.
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd-~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----G~ 247 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD-GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----GE 247 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccccCC-CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----ce
Confidence 00000 111 345677877 666666654 2678999853 22
Q ss_pred CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec---CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 193 PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS---SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.-..-+... +--.+++|-|.|. ++|+.-. ...|.+|. |++-..-.+.- . .......|..|+
T Consensus 248 L~stSE~v~-------gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l-~------~~~~~~~v~~l~ 311 (928)
T PF04762_consen 248 LQSTSEPVD-------GLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTL-R------FDPEEEKVIELA 311 (928)
T ss_pred EEeccccCC-------CccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEec-C------CCCCCceeeEEE
Confidence 222222111 4455889999986 4444332 23466665 34332222210 0 012456799999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCC----ccccc-ccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE----PFELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~----~~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
|++++. .|+..-.|. |.+|-.+.- ..++. .....+..+.|||.+...|...+.++.+..+
T Consensus 312 Wn~ds~----------iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 312 WNSDSE----------ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred ECCCCC----------EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 999987 455554444 877754321 11222 2234456699999888888888876666543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=69.05 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=151.8
Q ss_pred CCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--------C------CEEEEEeCCCc
Q 019258 71 PTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--------G------SECVSVGEDGR 136 (343)
Q Consensus 71 ~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~------~~~~s~s~dg~ 136 (343)
+..-.++.|+.+.+++-|+.+ .|.+-|...-+.++..+ .|+..|+.+.|. . -.++++...|.
T Consensus 15 ~sN~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHS-LVSVVDSRSLQLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred cccccccccCccceEEEecCc-eEEEEehhhhhhhhccc---cCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 334667888877777776654 57777876555554443 588999999996 1 14667778899
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEEeCC----C-CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS----P-TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
|.+||..... +...+..+.. ++..++|-+ . ..+++-....+|.+|+..+ ++...+..... ...
T Consensus 91 Iil~d~~~~s-~~~~l~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt---G~k~Wk~~ys~-------~iL 158 (1062)
T KOG1912|consen 91 IILVDFVLAS-VINWLSHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT---GEKFWKYDYSH-------EIL 158 (1062)
T ss_pred EEEEEehhhh-hhhhhcCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEccC---CceeeccccCC-------cce
Confidence 9999998874 3444444444 789999976 2 5677777899999999988 77776655443 668
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEccC---CceeeeeecCCCC--c------------ccccCCcc----ccEEEEEE
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLRW---QQQSIVLSGVGTG--E------------AVTHSLSE----SEVWEVQY 270 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~~---~~~~~~~~~~~~~--~------------~~~~~~h~----~~v~~v~~ 270 (343)
.|+.++|....-+..-+..|.+.+-+.-. +..|.+..++... + ..+...-. .-...++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 88999998743333345567777776422 1222222211100 0 00000000 01134667
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccc---ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELL---AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~---~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|+-. .++...--..|+++|..-+. .-.. ....++-++--.| .-+.|.|.-.+|.+.+|.|
T Consensus 239 ~p~~r----------n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~-~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 239 SPHWR----------NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP-RRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred Chhhh----------ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC-CcceEEEEecCCeEEEEEe
Confidence 77765 35666667777887764321 1111 1234555555555 3488999999999999865
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0034 Score=64.46 Aligned_cols=213 Identities=10% Similarity=0.090 Sum_probs=122.5
Q ss_pred eeEEEcc-CCCeEEE-EcCCCcEEEEEccCceeeeeecc-------CCc-----c-ccCeEEEEec---CCEEEEEeCCC
Q 019258 74 ISSLSTS-HQSLVAA-STLSGSLHVLSSAMQVLLSVDEN-------SGF-----H-VGPISGVDLT---GSECVSVGEDG 135 (343)
Q Consensus 74 v~~v~~~-~~~~l~~-~s~dg~v~v~~~~~~~~~~~~~~-------~~~-----h-~~~v~~~~~~---~~~~~s~s~dg 135 (343)
...+++. +++.|++ -..++.|++++........+... ..+ . ...-.++.++ +..+++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 5677777 5565444 44567888888764332111110 000 0 0112456665 55677888899
Q ss_pred cEEEEECCCCceEEEEEcC-------------CCccceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEec-
Q 019258 136 RVNLVSVIGGGEFKRVYDG-------------NGLVGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKG- 199 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~- 199 (343)
.|++||..++. ....... ........+++++ ++ .+++-+.++.|++||+.. +.. ..+.+
T Consensus 706 ~I~v~d~~~g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~-~~~~gg 780 (1057)
T PLN02919 706 QIWEYNISDGV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGS-RLLAGG 780 (1057)
T ss_pred eEEEEECCCCe-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcE-EEEEec
Confidence 99999998763 3222100 0011356788888 44 566667789999999876 221 11100
Q ss_pred ----------ccCCCCC----cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC---CcccccCCcc
Q 019258 200 ----------NFGSQGK----ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT---GEAVTHSLSE 262 (343)
Q Consensus 200 ----------~~~~~~~----~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~h~ 262 (343)
.....+. .-..-..++++|++. ++++.+.+++|++||..+.. ...+.+.+. .+.....+.-
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR-VTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-EEEEeccCCcCCCCCccccccc
Confidence 0000000 001245889999875 77888899999999987642 233322110 0000001122
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.....|++++++. .+++-+.+++|++|+...
T Consensus 859 ~~P~GIavd~dG~----------lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 859 SEPAGLALGENGR----------LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCceEEEEeCCCC----------EEEEECCCCEEEEEECCC
Confidence 3467899999876 678888999999998754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0021 Score=58.91 Aligned_cols=223 Identities=14% Similarity=0.074 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCcc--ccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcC-C-C
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH--VGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDG-N-G 156 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~-~-~ 156 (343)
.++.+++++.+|.+..+|..+++.+-........ .....+-...+..++.++.+|.+...|..+++...+.... . .
T Consensus 159 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 159 SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 3567888888999999998866544222111000 0000111112456777788899999999887532221100 0 0
Q ss_pred cc---ceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 157 LV---GFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 157 ~~---~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
.. ....+...| .+.++.++.++.+..+|..+ ++.+.+.... . ...+... +..+ ..++.+
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t---G~~~W~~~~~--------~-~~~~~~~--~~~v-y~~~~~ 303 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS---GQIVWKREYG--------S-VNDFAVD--GGRI-YLVDQN 303 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC---CCEEEeecCC--------C-ccCcEEE--CCEE-EEEcCC
Confidence 00 011112233 56777788899999999988 6655443211 1 1122222 2344 457789
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELL 309 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~ 309 (343)
|.+..+|..+++........ .+ ......... +. .++.++.||.|+.++.... ..+..
T Consensus 304 g~l~ald~~tG~~~W~~~~~---------~~-~~~~sp~v~--~g----------~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDL---------LH-RLLTAPVLY--NG----------YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CeEEEEECCCCcEEEccccc---------CC-CcccCCEEE--CC----------EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999887554432200 00 111111122 23 6888999999999887543 22222
Q ss_pred cc-cccc-ceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 310 AE-PCAI-NSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 310 ~~-~~~i-~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
.- ...+ .+-.+.. ..|+.+++++.++.+++|
T Consensus 362 ~~~~~~~~s~P~~~~---~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 362 KVDSSGFLSEPVVAD---DKLLIQARDGTVYAITRP 394 (394)
T ss_pred EcCCCcceeCCEEEC---CEEEEEeCCceEEEEeCC
Confidence 11 1222 2223343 578888899999999987
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=67.64 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=78.8
Q ss_pred CccCCCCCCeeEEEcc--CCCeEEEE----cCCCcE----EEEEccCc--eeeeeeccCCccccCeEEEEec--CCEEEE
Q 019258 65 HSQWTPPTRISSLSTS--HQSLVAAS----TLSGSL----HVLSSAMQ--VLLSVDENSGFHVGPISGVDLT--GSECVS 130 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~--~~~~l~~~----s~dg~v----~v~~~~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s 130 (343)
++...-+....++.|+ .+..+.+- +.+|.+ .+|++..+ +.+.+... .....|.+++++ .+.++.
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi--pL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI--PLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE--ecCCcceEEecCcccceEEE
Confidence 3444445556777787 44444443 224432 45665533 22222222 366788899988 889999
Q ss_pred EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 131 VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
|+.||+|.+||...+. ..... .. ...+.++|+| +..++.|+..|.+.+||..-
T Consensus 277 GC~DgSiiLyD~~~~~--t~~~k-a~-~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGV--TLLAK-AE-FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCCeEEEEEcCCCe--eeeee-ec-ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999997763 22222 22 2588999999 88899999999999999865
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=69.30 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=76.0
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
|++.+..+-+ ...+...+.. .|.+++|+| ..++..++.+++|+|.|+++ ...+..+..+ .++.++
T Consensus 175 v~~l~~~~fk-ssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet---~~~vssy~a~--------~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFK-SSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLET---SCVVSSYIAY--------NQIWSC 241 (463)
T ss_pred eEEeccCCcc-hhhcccccch-hhhhhccCccccceeeeeccCceEEEEeccc---ceeeeheecc--------CCceee
Confidence 5555544432 2333334444 799999999 44789999999999999998 5555555544 569999
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+|+-+..+.+.+|-.+|.|.+||+|.++.+...+
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 9999999999999999999999999988776654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.001 Score=60.03 Aligned_cols=273 Identities=7% Similarity=-0.007 Sum_probs=149.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC---
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG--- 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg--- 92 (343)
..-.+..++|+| .+.+|++.... -+.+|.-+... .+..+.| ..|..+.|+ .+.+|.+-+..+
T Consensus 31 ~~~p~~~~~~SP----~G~~l~~~~~~------~V~~~~g~~~~---~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 31 ENWPVAYVSESP----LGTYLFSEHAA------GVECWGGPSKA---KLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred cCcchhheeecC----cchheehhhcc------ceEEccccchh---heeeeec-CCceecccCcccceeeeeccCCccC
Confidence 445688899999 78888765433 26688875432 2333333 468888888 777777765544
Q ss_pred ------------cEEEEEccCceeeeeeccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCCceEEEE-EcCCC
Q 019258 93 ------------SLHVLSSAMQVLLSVDENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV-YDGNG 156 (343)
Q Consensus 93 ------------~v~v~~~~~~~~~~~~~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~-~~~~~ 156 (343)
.+.+||...+.-+........ ..... -+.|+ +.+.+-. -...+.++++ ++. .... +..-.
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q-~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n-~~~~p~~~lr 172 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ-PYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN-IEEHPFKNLR 172 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccccCC-cccccceeeeeecchhhhhh-ccCeEEEEec-CCc-cccCchhhcc
Confidence 388999875543322221111 10122 34444 4444433 2235889986 321 1111 01111
Q ss_pred ccceEEEEeCCC---CEEEE-----EeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 157 LVGFNCVKWASP---TEFVT-----GGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 157 ~~~v~~~~~~~~---~~l~t-----~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
...+...+|+|. ..|+. .+....+++|.+.. ...+.+ ++. ..-..+.|++.|..+++-
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk---------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFK---------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEe---------ecccEEEEecCCceEEEE
Confidence 125888888882 22232 35578888888865 444443 332 224567888888765432
Q ss_pred Ee----------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 227 GG----------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 227 g~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
.- .+..+++++++....+... .-.++|.+.+|.|++.. + .+++|-.+..+
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~------------~~~~pVhdf~W~p~S~~-------F-~vi~g~~pa~~ 300 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK------------DLKDPVHDFTWEPLSSR-------F-AVISGYMPASV 300 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec------------cccccceeeeecccCCc-------e-eEEecccccce
Confidence 11 1345788888765544442 24789999999998773 1 23333455566
Q ss_pred EEEecCCCcccccccccccceeeecCCCCCeeEE-ccCC--ceEEEEe
Q 019258 297 AVVEQGEEPFELLAEPCAINSFDIDPQNPSDVIC-SLEW--ESIAIVS 341 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~-~~~~--~~i~~~~ 341 (343)
-+++..... ..+.-..+=|.+-++|. +.+++. |-++ +.|.+|.
T Consensus 301 s~~~lr~Nl-~~~~Pe~~rNT~~fsp~-~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 301 SVFDLRGNL-RFYFPEQKRNTIFFSPH-ERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred eecccccce-EEecCCcccccccccCc-ccEEEEecCCccccceEEec
Confidence 666654432 22222344555666663 344443 2222 4555554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0048 Score=55.40 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=107.7
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC-cEEEEEccCceeeeeec
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG-SLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg-~v~v~~~~~~~~~~~~~ 109 (343)
.+++++++.|..+ .-+.+..+ ...-.+++.+.|.-..+. +++.++.|..|| .+-||+....+.-.+.
T Consensus 330 ~~Gd~ia~VSRGk------aFi~~~~~----~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e- 398 (668)
T COG4946 330 VNGDYIALVSRGK------AFIMRPWD----GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE- 398 (668)
T ss_pred CCCcEEEEEecCc------EEEECCCC----CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-
Confidence 3567777777642 11222211 113356777888777777 777899999999 8999999855422222
Q ss_pred cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC----CCcEEE
Q 019258 110 NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF----GYGLQW 182 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~----d~~i~i 182 (343)
..-+.|.++..+ |+.++.+-....+-+.|++++. +...-..... -|+.+.|+| +..++-+-- ...|++
T Consensus 399 ---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 399 ---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 345688999888 6778888888889999999984 4444333333 799999999 544544432 556899
Q ss_pred EEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 183 WDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+|... ..+....... +.=.+-+|.|+++++.
T Consensus 474 ydm~~----~Kiy~vTT~t-------a~DfsPaFD~d~ryLY 504 (668)
T COG4946 474 YDMDG----GKIYDVTTPT-------AYDFSPAFDPDGRYLY 504 (668)
T ss_pred EecCC----CeEEEecCCc-------ccccCcccCCCCcEEE
Confidence 99866 3444433222 3334557788877654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=46.64 Aligned_cols=36 Identities=19% Similarity=0.512 Sum_probs=31.6
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWD 184 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd 184 (343)
+...+..|.. .|.+++|+| +..|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence 4556677766 899999999 89999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0028 Score=57.90 Aligned_cols=273 Identities=9% Similarity=0.017 Sum_probs=144.2
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---------
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL--------- 90 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~--------- 90 (343)
-+-++|+| .|.+|+|=-.- | |.+|.=+. ...+..+.|+ .|.-+.|+ .+.+|++-+.
T Consensus 213 etyv~wSP----~GTYL~t~Hk~---G---I~lWGG~~---f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 213 ETYVRWSP----KGTYLVTFHKQ---G---IALWGGES---FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeeEEecC----CceEEEEEecc---c---eeeecCcc---HHHHHhccCC-CceeeecCCccceEEEecCCccccCccc
Confidence 45689999 89999875322 2 66886533 3334455665 46778888 7788888764
Q ss_pred --CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 91 --SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 91 --dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
...+.|||+.++...............---+.|+ +++++.-..+ +|.+++...- .+.... .-.-.+|...+|+
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~K-slki~gIr~Fsws 355 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKK-SLKISGIRDFSWS 355 (698)
T ss_pred CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeeccc-ccCCccccCcccC
Confidence 2578999998665443222211111111123455 7777766665 5999987653 121111 1112268888999
Q ss_pred C-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE---------EecCC
Q 019258 167 S-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA---------GGSSG 231 (343)
Q Consensus 167 ~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s---------g~~dg 231 (343)
| ++.|+.=.- -..+.+-.+.+ .+.+.+...+. -.=..+-|-.+|.++.+- ++.=-
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCc---cceeeecccee-------eeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 9 443332111 11122222222 11111100000 001122333334333211 11122
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC--eEEEEec--CCCccc
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG--ILAVVEQ--GEEPFE 307 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--~i~~~~~--~~~~~~ 307 (343)
.+.|+-+|...-|+... .-...|...+|-|.+.. +.+-.+.+. ++..+.. ......
T Consensus 426 n~eIfrireKdIpve~v-----------elke~vi~FaWEP~gdk---------F~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVV-----------ELKESVIAFAWEPHGDK---------FAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred eEEEEEeeccCCCceee-----------ecchheeeeeeccCCCe---------EEEEEccccccceeEEEeecCCCchh
Confidence 46677788776676665 23578999999999874 333333333 4555543 222223
Q ss_pred cccc--ccccceeeecCCCCCeeEEccC---CceEEEEe
Q 019258 308 LLAE--PCAINSFDIDPQNPSDVICSLE---WESIAIVS 341 (343)
Q Consensus 308 ~~~~--~~~i~s~~~~~~~~~~l~~~~~---~~~i~~~~ 341 (343)
+... ....|.+-|+| .|++|+.++- .+.+++++
T Consensus 486 lVk~~dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSP-KGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hhhhhcccccceEEEcC-CCcEEEEEEecccccceEEEe
Confidence 3332 25689999999 6788887653 35555553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0046 Score=52.69 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=125.0
Q ss_pred EEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 76 SLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 76 ~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
+..|. ++.++++-...+.|..|+........ ... ....++.+. +..++.+..++ +.++|..+++ ...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-----~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~-~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-----PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGK-VTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-----SSEEEEEEECTTSEEEEEETTC-EEEEETTTTE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-----CCCceEEEEccCCEEEEEEcCc-eEEEecCCCc-EEEE
Confidence 45565 45666666678889888887544322 211 114555555 67777777666 5555988873 4333
Q ss_pred EcC---C-CccceEEEEeCC-CCEEEEEeCC--------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 152 YDG---N-GLVGFNCVKWAS-PTEFVTGGFG--------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 152 ~~~---~-~~~~v~~~~~~~-~~~l~t~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
... . .......+++.+ ++..++.... +.|..++.. ..+..+...- ...+.++|+|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~~~~~~~~~-------~~pNGi~~s~ 143 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GKVTVVADGL-------GFPNGIAFSP 143 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SEEEEEEEEE-------SSEEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----CeEEEEecCc-------ccccceEECC
Confidence 322 1 334688999999 6666655543 335555543 2222222111 4578999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCce----eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQ----SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
++..++++-+..+.|..+|+..... +..+... ..-.+..-.+++..++. ..++.-..+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~g~pDG~~vD~~G~----------l~va~~~~~ 205 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF--------PGGPGYPDGLAVDSDGN----------LWVADWGGG 205 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---------SSSSCEEEEEEEBTTS-----------EEEEEETTT
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEc--------CCCCcCCCcceEcCCCC----------EEEEEcCCC
Confidence 9988888888899999999864332 1112100 11123467899988776 455556788
Q ss_pred eEEEEecCCCcccccccc-cccceeeecC
Q 019258 295 ILAVVEQGEEPFELLAEP-CAINSFDIDP 322 (343)
Q Consensus 295 ~i~~~~~~~~~~~~~~~~-~~i~s~~~~~ 322 (343)
.|.+++...+....+.-+ ..+.+++|.+
T Consensus 206 ~I~~~~p~G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEEETTSCEEEEEE-SSSSEEEEEEES
T ss_pred EEEEECCCccEEEEEcCCCCCEEEEEEEC
Confidence 999999876555544444 4577777753
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.4e-07 Score=81.30 Aligned_cols=210 Identities=12% Similarity=0.044 Sum_probs=128.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcC---
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTL--- 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~--- 90 (343)
...+.+.+++|.-.. +...++.|+.++. |-+-.+..+..-.-...-++....++++|. +.+.|++|-.
T Consensus 54 sdtqy~kcva~~y~~--d~cIlavG~atG~-----I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGN--DRCILAVGSATGN-----ISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred ccCCCceeehhhcCC--chhhhhhccccCc-----eEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhc
Confidence 344667888888721 3367778887754 225555322211123334566789999999 7788888853
Q ss_pred -CCcEEEEEccCc--eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 91 -SGSLHVLSSAMQ--VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 91 -dg~v~v~~~~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|..+.|||+... .+.....+...--....+++|. .+.+++|.....+.++|++... .... .-... .+..+..
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~-svnTk-~vqG~tV 203 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVS-SVNTK-YVQGITV 203 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhh-hhhhh-hccccee
Confidence 778999999743 1111111111122345577777 5667778888899999998642 1111 11111 3666677
Q ss_pred CC-CCEEEEEeCCCcEEEEE-ccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-cCCcEEEEEccC
Q 019258 166 AS-PTEFVTGGFGYGLQWWD-LRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-SSGTVFAWDLRW 240 (343)
Q Consensus 166 ~~-~~~l~t~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~dg~v~iwd~~~ 240 (343)
.| ....++...|+.|.+|| .+. ...++..+..... .....+..++|.|....++++.. +.++|+++|++.
T Consensus 204 dp~~~nY~cs~~dg~iAiwD~~rn--ienpl~~i~~~~N---~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNSDGDIAIWDTYRN--IENPLQIILRNEN---KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccccCceeeccchhh--hccHHHHHhhCCC---CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77 33344455699999999 555 3344444332221 11145999999998877777665 467899999865
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0041 Score=52.34 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=65.2
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccC---CccccCeEEEEec--------CCEEEEEeCCCcEEEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENS---GFHVGPISGVDLT--------GSECVSVGEDGRVNLV 140 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~---~~h~~~v~~~~~~--------~~~~~s~s~dg~v~~w 140 (343)
+=..++|+ +..+||.+.+.|+|++||+...+...+.... ..-...|.++.|. ...++.-..+|.++-+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 45689999 8899999999999999999754433222211 1112456667665 2367777888888877
Q ss_pred ECCCC--c---eEEE-EEcCCCccceEEEEeCC-CCEEEEEeC
Q 019258 141 SVIGG--G---EFKR-VYDGNGLVGFNCVKWAS-PTEFVTGGF 176 (343)
Q Consensus 141 d~~~~--~---~~~~-~~~~~~~~~v~~~~~~~-~~~l~t~~~ 176 (343)
-+..+ + .... .+..+....|.++.|+| .++|+.||.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 65321 1 1111 11223233699999999 566666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00089 Score=64.06 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=120.1
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCc-----EEEEEccccCC
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYG-----LQWWDLRRAGS 190 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~-----i~iwd~~~~~~ 190 (343)
.+.+++-++..++.|+.+|.|.+.+-.- +..+-+......-+..+.... .+.|++.+.|++ |++||+..-.+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6777776688999999999988776332 232333333331233333333 467888888665 99999986222
Q ss_pred CC-C--ee--EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE--c-cCCceeeeeecCCCCcccccCCcc
Q 019258 191 GG-P--VL--QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD--L-RWQQQSIVLSGVGTGEAVTHSLSE 262 (343)
Q Consensus 191 ~~-~--~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd--~-~~~~~~~~~~~~~~~~~~~~~~h~ 262 (343)
.. | +. .+..+. ....+.++.+++.+.+- ..+|+|..||.|..+- + |.......+. ..-.
T Consensus 105 n~sP~c~~~~ri~~~~--np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~----------~~~~ 171 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIK--NPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYS----------HRGK 171 (933)
T ss_pred CCCcceeeeeeeeccC--CCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeee----------ccCC
Confidence 23 2 21 122211 12234789999999874 5678999999999994 2 3222223333 3347
Q ss_pred ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccc-ccccccceeeecCCCCCeeEEccCCceEEE
Q 019258 263 SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELL-AEPCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 263 ~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.+|+++.+.-++.. ++.+..-..|.++...... ..++ .+..++++-.+++.. ..++|++ .+.+++
T Consensus 172 ~pITgL~~~~d~~s----------~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~f 239 (933)
T KOG2114|consen 172 EPITGLALRSDGKS----------VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYF 239 (933)
T ss_pred CCceeeEEecCCce----------eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEE
Confidence 89999999877663 2444444445555433222 3323 346788888888743 4467776 447888
Q ss_pred EeC
Q 019258 340 VSR 342 (343)
Q Consensus 340 ~~~ 342 (343)
|..
T Consensus 240 Y~s 242 (933)
T KOG2114|consen 240 YDS 242 (933)
T ss_pred EcC
Confidence 764
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.9e-05 Score=65.62 Aligned_cols=199 Identities=16% Similarity=0.050 Sum_probs=131.9
Q ss_pred ccccCeEEEEec-CCEEEEEeCCCcEEEEECCC--CceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccc
Q 019258 113 FHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG--GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~ 187 (343)
.|...|+.+... .+.+.+++.||.++.|.-.. +......+..|-. .+.+++-+. +-++.|.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEeec
Confidence 488888888888 99999999999999998654 2223333333333 466666566 666777777 99999999987
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v 265 (343)
..-+..++...- ++.+..+ .+|.. ..+.++..++|.+.++|-+...++.... ...|..+|
T Consensus 86 ---~DminmiKL~~l-----Pg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---------kklH~sPV 147 (558)
T KOG0882|consen 86 ---FDMINMIKLVDL-----PGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---------KKLHFSPV 147 (558)
T ss_pred ---cchhhhcccccC-----CCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---------cccccCce
Confidence 333322322110 0222222 12221 2344555679999999988766555544 16799999
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC------C--ccccccc---------ccccceeeecCCCCCee
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE------E--PFELLAE---------PCAINSFDIDPQNPSDV 328 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~------~--~~~~~~~---------~~~i~s~~~~~~~~~~l 328 (343)
..+.+++.+. .++|....|.|..|.... . ..++.++ ..-..++.++| ++..+
T Consensus 148 ~~i~y~qa~D----------s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qi 216 (558)
T KOG0882|consen 148 KKIRYNQAGD----------SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQI 216 (558)
T ss_pred EEEEeecccc----------ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcc
Confidence 9999999887 477878889999998653 1 1121121 13478999999 56777
Q ss_pred EEccCCceEEEEe
Q 019258 329 ICSLEWESIAIVS 341 (343)
Q Consensus 329 ~~~~~~~~i~~~~ 341 (343)
..-++|..|+++.
T Consensus 217 stl~~DrkVR~F~ 229 (558)
T KOG0882|consen 217 STLNPDRKVRGFV 229 (558)
T ss_pred cccCcccEEEEEE
Confidence 7777888888763
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00076 Score=62.08 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=56.1
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
.+.+.+++| ...++.|+.||.|.+||... + +..+.... -..+.++|||+|. ++++|++.|.+.+||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~--~t~~~ka~-------~~P~~iaWHp~ga-i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTR---G--VTLLAKAE-------FIPTLIAWHPDGA-IFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCC---C--eeeeeeec-------ccceEEEEcCCCc-EEEEEcCCceEEEEE
Confidence 699999999 88999999999999999866 2 22322221 4478899999985 678899999999999
Q ss_pred ccCC
Q 019258 238 LRWQ 241 (343)
Q Consensus 238 ~~~~ 241 (343)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 8654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0038 Score=56.45 Aligned_cols=280 Identities=13% Similarity=0.061 Sum_probs=150.9
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCC---C-------CCCceeeeeCCCCCCCCCCccCCCCCCee-EEEcc
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTD---A-------DSPSLETHSISLPASLTPHSQWTPPTRIS-SLSTS 80 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~---~-------~~~~l~~w~~~~~~~~~~~~~~~~~~~v~-~v~~~ 80 (343)
+.+++|. .|.-+.++| .+.+|+|=+...- . ++-.+.+||...............+.-.. -+.|+
T Consensus 66 l~~~~~~-~V~~~~fSP----~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s 140 (561)
T COG5354 66 LVRFRHP-DVKYLDFSP----NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS 140 (561)
T ss_pred eeeeecC-CceecccCc----ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeee
Confidence 3444443 366677777 8888888775432 0 11135688875432111111112221233 56677
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEE-----EEeCCCcEEEEECCCCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECV-----SVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~-----s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
-.+.+++--....++|+++... +........-...+..+.++ +..|+ ..+.++++++|.+..++.....
T Consensus 141 ~~D~y~ARvv~~sl~i~e~t~n--~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 141 IDDKYVARVVGSSLYIHEITDN--IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred ecchhhhhhccCeEEEEecCCc--cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 2333333335567999997421 11111111112356777776 22333 2467888999998765422221
Q ss_pred EcCCCccceEEEEeCC-CCEEEEE--e---------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTG--G---------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~--~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
.-..- .=..+.|++ +..++.- . ....+.|++++. ..-++. .... ++|+..+|.|.
T Consensus 219 ~lfk~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~--~~~~-------~pVhdf~W~p~ 285 (561)
T COG5354 219 NLFKV--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVE--KDLK-------DPVHDFTWEPL 285 (561)
T ss_pred eeEee--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--ccccee--cccc-------ccceeeeeccc
Confidence 11111 123466766 4433211 1 125577777765 111211 1212 88999999998
Q ss_pred CCeE-EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---Ce
Q 019258 220 RKHT-CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GI 295 (343)
Q Consensus 220 ~~~~-~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~ 295 (343)
+... +++|-.+-.+.++|++.. . .... -++.=+.+.|+|... +++.++-| |.
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N-l-~~~~------------Pe~~rNT~~fsp~~r----------~il~agF~nl~gn 341 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN-L-RFYF------------PEQKRNTIFFSPHER----------YILFAGFDNLQGN 341 (561)
T ss_pred CCceeEEecccccceeecccccc-e-EEec------------CCcccccccccCccc----------EEEEecCCccccc
Confidence 7543 445567889999999874 2 2221 245556788999887 67776665 46
Q ss_pred EEEEecCCCcccc-cccccccceeeecCCCCCeeEEccCCce
Q 019258 296 LAVVEQGEEPFEL-LAEPCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 296 i~~~~~~~~~~~~-~~~~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
+-+|+....-... ........-.+|+| +++++....+.++
T Consensus 342 i~i~~~~~rf~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k 382 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEK 382 (561)
T ss_pred eEEeccCCceEEEEEeecCCceEeeccC-CceEEEecCCCcc
Confidence 8888875543322 22234455668888 5677777665544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00054 Score=65.00 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=99.4
Q ss_pred CCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 019258 70 PPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 70 ~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
....++|++++ +..|+.|+-+|.|++++......... .|... ...|++++|||.||+|.+-.+-+.+ -.
T Consensus 38 ~~D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~~~~~-----~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-~~ 106 (846)
T KOG2066|consen 38 QNDAISCCAVH-DKFFALGTHRGAVYLTTCQGNPKTNF-----DHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-EI 106 (846)
T ss_pred hhhHHHHHHhh-cceeeeccccceEEEEecCCcccccc-----ccccc----ccCCceEEEecCCCcEEEeeccCCc-cc
Confidence 34557777776 78999999999999998873211111 23222 2239999999999999999887764 33
Q ss_pred EEEcCCCccceEEEEeCC------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 150 RVYDGNGLVGFNCVKWAS------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
..+..+. ++.+++++| ...+++||..| +.++.-+- .+.. .....+.+ . ++|+++.|.- ++
T Consensus 107 ~~~df~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w--lgnk-~~v~l~~~-e----G~I~~i~W~g---~l 172 (846)
T KOG2066|consen 107 TQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW--LGNK-DSVVLSEG-E----GPIHSIKWRG---NL 172 (846)
T ss_pred eeEecCC--cceeEEeccchhhhhhhheeecCcce-EEEehhhh--hcCc-cceeeecC-c----cceEEEEecC---cE
Confidence 3344444 588899887 46799999988 88876554 1221 12222221 1 8999999975 35
Q ss_pred EEEEecCCcEEEEEccCCc
Q 019258 224 CLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~ 242 (343)
+|=++++ -|++||....+
T Consensus 173 IAWand~-Gv~vyd~~~~~ 190 (846)
T KOG2066|consen 173 IAWANDD-GVKVYDTPTRQ 190 (846)
T ss_pred EEEecCC-CcEEEeccccc
Confidence 5555554 58999987643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.01 Score=50.01 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=119.2
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
+|.|..||..+++.+-.........+.+......++.+++++.++.|..||..+++...+.......... .....+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccc
Confidence 5778888886655543332211122222222224788888899999999999998644444322221111 1122667
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
++.++.++.|..+|.++ ++.+.+. ......... .......+. +. .++.+..++.|..+|+++++.......
T Consensus 79 v~v~~~~~~l~~~d~~t---G~~~W~~~~~~~~~~~~--~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKT---GKVLWSIYLTSSPPAGV--RSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEEETTSEEEEEETTT---SCEEEEEEE-SSCTCST--B--SEEEEE--TT-EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred cccccceeeeEecccCC---cceeeeecccccccccc--ccccCceEe--cC-EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 77787889999999888 7777773 322110101 112223333 33 345677799999999999876655542
Q ss_pred CCCCcccccCCc-ccc------E-EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccce-ee
Q 019258 250 VGTGEAVTHSLS-ESE------V-WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINS-FD 319 (343)
Q Consensus 250 ~~~~~~~~~~~h-~~~------v-~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s-~~ 319 (343)
. ... ... + ..+.+. +. .++.++.+|.+..++..... .+... ...+.+ +.
T Consensus 151 -~-------~~~~~~~~~~~~~~~~~~~~~--~~----------~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~ 209 (238)
T PF13360_consen 151 -G-------EPRGSSPISSFSDINGSPVIS--DG----------RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPS 209 (238)
T ss_dssp -S-------TT-SS--EEEETTEEEEEECC--TT----------EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEE
T ss_pred -C-------CCCCCcceeeecccccceEEE--CC----------EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCce
Confidence 1 000 011 1 122222 12 46777777764444654332 22111 223333 44
Q ss_pred ecCCCCCeeEEccCCceEEEEeC
Q 019258 320 IDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 320 ~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+ +..|++++.++.+++++.
T Consensus 210 ~~---~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 210 VD---GGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp CC---CTEEEEEETTTEEEEEET
T ss_pred ee---CCEEEEEeCCCEEEEEEC
Confidence 44 378888888899999874
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.01 Score=54.79 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=107.4
Q ss_pred ceeeEEecCCCCCCCCe-EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEE-EcCC--CcE
Q 019258 20 YIDAVRWLPPLSPLSKL-AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAA-STLS--GSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~-l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~-~s~d--g~v 94 (343)
.+..-+|+| +++. ++..++++. ...|+++++.... ...+. ..++......|+ ++..|+. .+.+ ..|
T Consensus 189 ~~~~p~wSp----DG~~~i~y~s~~~~--~~~Iyv~dl~tg~-~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWAN----KEQTAFYYTSYGER--KPTLYKYNLYTGK-KEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECC----CCCcEEEEEEccCC--CCEEEEEECCCCc-EEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 566789999 7764 666666631 2357888885432 22222 345566677898 7765544 4434 456
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.++++...+...+.. +.+......|+ |+.++-.+ ..+ .|.+.|+.++. ..++...... ...|+| +
T Consensus 260 y~~dl~~g~~~~LT~----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~~----~~~~SPDG 330 (419)
T PRK04043 260 YLYDTNTKTLTQITN----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGKN----NSSVSTYK 330 (419)
T ss_pred EEEECCCCcEEEccc----CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCCc----CceECCCC
Confidence 666765443322221 22222334576 76666555 333 57777887764 4444322211 237899 6
Q ss_pred CEEEEEeCC---------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc--EEEEE
Q 019258 169 TEFVTGGFG---------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT--VFAWD 237 (343)
Q Consensus 169 ~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~--v~iwd 237 (343)
..++..... ..|.+.|+.. + ....+... +......|+|+|..++.+....+. +.+.+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~---g-~~~~LT~~--------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNS---D-YIRRLTAN--------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCC---C-CeEECCCC--------CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 666666543 2577778766 3 33444322 122357899999887776555444 55556
Q ss_pred ccC
Q 019258 238 LRW 240 (343)
Q Consensus 238 ~~~ 240 (343)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0047 Score=55.50 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC-cEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG-RVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg-~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
++++++..|. |...|.+...+..+++ +|.+.|.-..+. ++.++.|..|| .+-++|.+++ .+.+....-.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e~kr~e~~lg- 402 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-EVKRIEKDLG- 402 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-eEEEeeCCcc-
Confidence 6777776654 4566666554444433 366677777666 77889999999 8999999998 4666655554
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec----CCc
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS----SGT 232 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~----dg~ 232 (343)
.|.+++.++ +..++.+.....|.+.|+.+ +. +..+..... +.|..++|||+++++ |-+-- -..
T Consensus 403 -~I~av~vs~dGK~~vvaNdr~el~vididn---gn-v~~idkS~~------~lItdf~~~~nsr~i-AYafP~gy~tq~ 470 (668)
T COG4946 403 -NIEAVKVSPDGKKVVVANDRFELWVIDIDN---GN-VRLIDKSEY------GLITDFDWHPNSRWI-AYAFPEGYYTQS 470 (668)
T ss_pred -ceEEEEEcCCCcEEEEEcCceEEEEEEecC---CC-eeEeccccc------ceeEEEEEcCCceeE-EEecCcceeeee
Confidence 599999999 67788888888999999988 33 333332221 779999999998765 44444 446
Q ss_pred EEEEEccCC
Q 019258 233 VFAWDLRWQ 241 (343)
Q Consensus 233 v~iwd~~~~ 241 (343)
|+++|+...
T Consensus 471 Iklydm~~~ 479 (668)
T COG4946 471 IKLYDMDGG 479 (668)
T ss_pred EEEEecCCC
Confidence 999999863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0024 Score=61.18 Aligned_cols=117 Identities=22% Similarity=0.314 Sum_probs=85.7
Q ss_pred cCCcccceeeE-EecCCCCCCCCeEEEEeecCC-CCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 14 RFPQSKYIDAV-RWLPPLSPLSKLAVLAIYDTD-ADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 14 ~~~~~~~i~~v-~w~p~~~~~~~~l~t~s~D~~-~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
.|+..+.++++ .|+| ..++|+.++.-.+ .+ ++.|+--.+ ++......+-.+++++|+ ..-.|+.|-.
T Consensus 10 E~~Dsdavsti~SWHP----sePlfAVA~fS~er~G--SVtIfadtG----EPqr~Vt~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHP----SEPLFAVASFSPERGG--SVTIFADTG----EPQRDVTYPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ecccccccccccccCC----CCceeEEEEecCCCCc--eEEEEecCC----CCCcccccceehhhhccChHHHHHhhccc
Confidence 34555555554 8999 7889999987654 23 344554332 234455666778899999 5556778888
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
-|.+.+|..+..+.-.+.. .|..+|..++|+ |..++++..-|.|.+|..+
T Consensus 80 ~g~~~v~~~~~~e~htv~~---th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVE---THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeecc---CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999987544333332 599999999999 9999999999999999875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.022 Score=52.56 Aligned_cols=178 Identities=8% Similarity=0.002 Sum_probs=103.0
Q ss_pred CeEEEEec--CCE-EEEEeC---CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCC--CcEEEEEcc
Q 019258 117 PISGVDLT--GSE-CVSVGE---DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFG--YGLQWWDLR 186 (343)
Q Consensus 117 ~v~~~~~~--~~~-~~s~s~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d--~~i~iwd~~ 186 (343)
......|+ ++. ++..+. +..|.++|+.+++ ...+..... ......|+| +..++ +.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKIASSQG--MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEEecCCC--cEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56778888 653 554443 3468888998874 555544333 356678999 54444 44434 567777875
Q ss_pred ccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCcccc
Q 019258 187 RAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
. + ....+.... +......|+|+|..++++....| .|++.|+..++...... .+.
T Consensus 266 ~---g-~~~~LT~~~-------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~----------~g~--- 321 (419)
T PRK04043 266 T---K-TLTQITNYP-------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF----------HGK--- 321 (419)
T ss_pred C---C-cEEEcccCC-------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc----------CCC---
Confidence 5 3 344444322 22234579999988877765555 57777886643322111 111
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEe-cC--------CeEEEEecCCCcccccccccccceeeecCCCCCeeEEccC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCS-ED--------GILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s-~d--------g~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
....|+|++.. ++..+ .. ..|++.+........+.......+..|+| +|+.|+....
T Consensus 322 -~~~~~SPDG~~----------Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SP-DG~~I~f~~~ 387 (419)
T PRK04043 322 -NNSSVSTYKNY----------IVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSS-DGGSIMFIKY 387 (419)
T ss_pred -cCceECCCCCE----------EEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECC-CCCEEEEEEc
Confidence 12489999884 44443 32 25788776544334444433445688999 5676666553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0041 Score=45.00 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=64.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.+.|+.|+.|..|++|+-+. ....+.+ .+ .+.++.......|+.+-.+|+|-+|+-. ..+...+..
T Consensus 15 ~~eLlvGs~D~~IRvf~~~e--~~~Ei~e-~~--~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-----~RlWRiKSK---- 80 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGDE--IVAEITE-TD--KVTSLCSLGGGRFAYALANGTVGVYDRS-----QRLWRIKSK---- 80 (111)
T ss_pred cceEEEecCCcEEEEEeCCc--EEEEEec-cc--ceEEEEEcCCCEEEEEecCCEEEEEeCc-----ceeeeeccC----
Confidence 37899999999999999664 2344433 33 4888888788889999999999999853 334445432
Q ss_pred CCcccCeEEEEE---cCCCCeEEEEEecCCcEE
Q 019258 205 GKASGMIHSVDI---HPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 205 ~~~~~~i~~v~~---~p~~~~~~~sg~~dg~v~ 234 (343)
..+.++++ .-+|..-+++|-.+|.|-
T Consensus 81 ----~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 ----NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22445443 334445678999999874
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0089 Score=57.53 Aligned_cols=192 Identities=11% Similarity=0.024 Sum_probs=110.6
Q ss_pred EecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCC-eeEEEccCC-CeEEEEcCCC-----cEEE
Q 019258 25 RWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTR-ISSLSTSHQ-SLVAASTLSG-----SLHV 96 (343)
Q Consensus 25 ~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~-v~~v~~~~~-~~l~~~s~dg-----~v~v 96 (343)
+|++ .+..+|.|+.|+. +|-++..- .....++ ++.. |.-+.-.++ .+|++-+.|+ .+++
T Consensus 30 c~~s----~~~~vvigt~~G~-------V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llki 96 (933)
T KOG2114|consen 30 CCSS----STGSVVIGTADGR-------VVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKI 96 (933)
T ss_pred EEcC----CCceEEEeecccc-------EEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEE
Confidence 4566 7788899998865 55553221 1111111 2222 333322233 5676666554 5899
Q ss_pred EEccCc---e---ee---eeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC--CCceEEEEEcCCCccceEE
Q 019258 97 LSSAMQ---V---LL---SVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI--GGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 97 ~~~~~~---~---~~---~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~--~~~~~~~~~~~~~~~~v~~ 162 (343)
|+++.. + .+ .+.. .......++.+++++ -+.++.|-.+|.|..+.-+ ..+-.+..+......+|+.
T Consensus 97 w~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 97 WDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred ecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 999721 1 11 1111 111134578888887 6778888899999988542 2212233344444448999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+.+.. +..++-+.....|.+|.+.. ..|......+.+ ..++|..+++..+.++.++ +..+.+||...
T Consensus 177 L~~~~d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G------~~lnCss~~~~t~qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 177 LALRSDGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNG------ISLNCSSFSDGTYQFICAG--SEFLYFYDSDG 244 (933)
T ss_pred eEEecCCceeEEEEecceeEEEEecC---CCcceeeeccCC------ccceeeecCCCCccEEEec--CceEEEEcCCC
Confidence 99877 44434444567889999876 223333232322 6799999998655454333 34799998764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.015 Score=53.36 Aligned_cols=224 Identities=10% Similarity=-0.005 Sum_probs=120.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEE-EEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG-VDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
.++.++.++.+|.+..+|..+++.+=.... .+.+.+ ....+..++.+..++.+..+|..+++..-+.........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV----AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC----CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 467788888999999999876554321111 112211 122366777788899999999999864433322111000
Q ss_pred eEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC--CCCeEEEEEecCCcEE
Q 019258 160 FNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP--SRKHTCLAGGSSGTVF 234 (343)
Q Consensus 160 v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~~~sg~~dg~v~ 234 (343)
... .-.| .+.++.++.++.+...|..+ ++...+.................+...| .+..+ ..++.+|.+.
T Consensus 195 ~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~---G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v-y~~~~~g~l~ 269 (394)
T PRK11138 195 LRG-ESAPATAFGGAIVGGDNGRVSAVLMEQ---GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV-YALAYNGNLV 269 (394)
T ss_pred ccC-CCCCEEECCEEEEEcCCCEEEEEEccC---ChhhheeccccCCCccchhcccccCCCcEEECCEE-EEEEcCCeEE
Confidence 000 0122 45677788899999999887 6655443311100000000011111122 12334 4567889999
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc--
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE-- 311 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~-- 311 (343)
.+|.++++...... .. ....+.. .+. .++.++.+|.|+.++.... ..+....
T Consensus 270 ald~~tG~~~W~~~----------~~---~~~~~~~--~~~----------~vy~~~~~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 270 ALDLRSGQIVWKRE----------YG---SVNDFAV--DGG----------RIYLVDQNDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred EEECCCCCEEEeec----------CC---CccCcEE--ECC----------EEEEEcCCCeEEEEECCCCcEEEcccccC
Confidence 99998876554432 11 1111222 223 5777888999888876432 2221111
Q ss_pred ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 312 PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 ~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.....+-.+.+ ..|+.++.++.+++++
T Consensus 325 ~~~~~sp~v~~---g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 325 HRLLTAPVLYN---GYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCcccCCEEEC---CEEEEEeCCCEEEEEE
Confidence 11233333443 5677777788888765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0018 Score=46.87 Aligned_cols=101 Identities=9% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
++|.-+|.+-|++|++|..|++|+-.. ...... -.+.|..++-...+ .++.+-++
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~------------e~~~v~~L~~~~~~-----------~F~Y~l~N 62 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT------------ETDKVTSLCSLGGG-----------RFAYALAN 62 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe------------cccceEEEEEcCCC-----------EEEEEecC
Confidence 345556667788999999999997542 222222 34678788777653 68999999
Q ss_pred CeEEEEecCCCccccccc--ccccceeeecCCCCCeeEEccCCceEEE
Q 019258 294 GILAVVEQGEEPFELLAE--PCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 294 g~i~~~~~~~~~~~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
|+|-+++.....-...+. +.++..+|++.+.-..||+|=.+|+|.+
T Consensus 63 GTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 63 GTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CEEEEEeCcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 999998875544322232 3457777887766678999999998864
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.1e-05 Score=71.54 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=103.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCC-cEEEEECC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDG-RVNLVSVI 143 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg-~v~~wd~~ 143 (343)
.+....+|++|+ +.++|++|+..|.|++|++..+... ...+.|..+|+.+..+ |...++.+ ... ...+|++.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 355678999999 8899999999999999999855432 2234699999999988 66555444 333 46799987
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
.--.++..+. .-.+++|+. ...-+.|.......+||+.+ +.++.++. .....+ ..-+++.|+|...
T Consensus 1176 s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT---~~~l~tylt~~~~~~----y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQT---CSPLQTYLTDTVTSS----YSNNLAHFSPCDT 1243 (1516)
T ss_pred cccCcccccc-----ccceeehhhhHHHHHhcccccceEEEeccc---CcHHHHhcCcchhhh----hhccccccCCCcc
Confidence 6323333332 356788877 22333344557788999998 77776633 211111 3347888999875
Q ss_pred eEEEEEecCCcEEEEEccCCce
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
.++ .|| .+||.|.++.
T Consensus 1244 LIl----ndG--vLWDvR~~~a 1259 (1516)
T KOG1832|consen 1244 LIL----NDG--VLWDVRIPEA 1259 (1516)
T ss_pred eEe----eCc--eeeeeccHHH
Confidence 433 456 4799988643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.028 Score=49.99 Aligned_cols=147 Identities=9% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCeEEEEcC----------CCcEEEEEccCc----eeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 019258 82 QSLVAASTL----------SGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 82 ~~~l~~~s~----------dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
..+|++|+. .|.|.+|++.+. ..+..... ....++|+++...++.++.+. .+.|.+|++...+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc
Confidence 466777764 289999999863 23333222 135789999988855555444 47799999988652
Q ss_pred EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.......+....+.++... .+.++.|...+.+.++.... ....+..+.... ...+++++.+-+++. .++.+
T Consensus 120 l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~--~~~~l~~va~d~-----~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDE--ENNKLILVARDY-----QPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEET--TTE-EEEEEEES-----S-BEEEEEEEE-SSS-EEEEE
T ss_pred chhhheecceEEEEEEecc-ccEEEEEEcccCEEEEEEEc--cCCEEEEEEecC-----CCccEEEEEEecCCc-EEEEE
Confidence 3333222222246666544 56899999999999886554 223333332111 115588888886664 66788
Q ss_pred ecCCcEEEEEcc
Q 019258 228 GSSGTVFAWDLR 239 (343)
Q Consensus 228 ~~dg~v~iwd~~ 239 (343)
..+|.+.++...
T Consensus 191 D~~gnl~~l~~~ 202 (321)
T PF03178_consen 191 DKDGNLFVLRYN 202 (321)
T ss_dssp ETTSEEEEEEE-
T ss_pred cCCCeEEEEEEC
Confidence 999999999775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.044 Score=46.33 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=117.8
Q ss_pred CCeEEEEcCCCcEEEEEccCc-eee-eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC--
Q 019258 82 QSLVAASTLSGSLHVLSSAMQ-VLL-SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-- 155 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~-~~~-~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-- 155 (343)
...+++.-.|..|.|-...++ ..+ .-....+.-...=..++|+ +..++.+...|+|+++|+... ....+-...
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCccccc
Confidence 344455556666666554422 111 0011111111234678888 677888889999999999753 222221111
Q ss_pred ---CccceEEEEeCC-------CCEEEEEeCCCcEEEEEccc--cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 156 ---GLVGFNCVKWAS-------PTEFVTGGFGYGLQWWDLRR--AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 156 ---~~~~v~~~~~~~-------~~~l~t~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
-...|-.+.|.. ...|+.-.++|.++-|-+.. .+..+....|.....-. ..|.++.++|..+-+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp----~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP----HGINSAVYHPKHRLL 162 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC----CceeEEEEcCCCCEE
Confidence 112466666644 33688888999999887632 01122333333211101 459999999987666
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE------E
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL------A 297 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i------~ 297 (343)
++.|++...-..+ ++-...+.+=..-.+.+. +..++.++|+.. .
T Consensus 163 lVgG~~~~~~~~s----------------------~a~~~GLtaWRiL~~~Py--------yk~v~~~~~~~~~~~~~~~ 212 (282)
T PF15492_consen 163 LVGGCEQNQDGMS----------------------KASSCGLTAWRILSDSPY--------YKQVTSSEDDITASSKRRG 212 (282)
T ss_pred EEeccCCCCCccc----------------------cccccCceEEEEcCCCCc--------EEEccccCccccccccccc
Confidence 6555554321010 111222322222222232 011222222211 1
Q ss_pred EEecC-CCcccc-cccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 298 VVEQG-EEPFEL-LAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 298 ~~~~~-~~~~~~-~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+|+.. ...... ..+...|..|.++| +|..|+|-.-+|.|.+|.-|
T Consensus 213 ~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 213 LLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred eeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecC
Confidence 12211 001111 12345799999999 67999999999999999876
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=60.78 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=93.3
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 160 v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
++|.+++ ...|+-|+.+|.|++.+... .+ .+...+. . . +..|.+ +++|+.||+|.|-.+-
T Consensus 42 is~~av~-~~~~~~GtH~g~v~~~~~~~----~~-~~~~~~s-------~-~-----~~~Gey-~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 42 ISCCAVH-DKFFALGTHRGAVYLTTCQG----NP-KTNFDHS-------S-S-----ILEGEY-VASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHhh-cceeeeccccceEEEEecCC----cc-ccccccc-------c-c-----ccCCce-EEEecCCCcEEEeecc
Confidence 4555544 45688899999999998743 44 3333332 1 1 445654 6899999999999887
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec----CCCccccccccccc
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ----GEEPFELLAEPCAI 315 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~----~~~~~~~~~~~~~i 315 (343)
+.+....+- ..-++..|+++|+-.. ..+. ++++|+.-| +.+.+. ......+....++|
T Consensus 102 ~~~~~~~~d------------f~rpiksial~Pd~~~--~~sk---~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 102 TDDEITQYD------------FKRPIKSIALHPDFSR--QQSK---QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred CCccceeEe------------cCCcceeEEeccchhh--hhhh---heeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 755433332 4578999999998110 0111 689999999 666543 22233344446899
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.++.|.+ .+++-++|. .|.|+..
T Consensus 164 ~~i~W~g---~lIAWand~-Gv~vyd~ 186 (846)
T KOG2066|consen 164 HSIKWRG---NLIAWANDD-GVKVYDT 186 (846)
T ss_pred EEEEecC---cEEEEecCC-CcEEEec
Confidence 9999997 688888766 5666654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.087 Score=47.09 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=119.8
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEE-EEe---------CCCcEEEEECCCCceEEEEEcCCC-----
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECV-SVG---------EDGRVNLVSVIGGGEFKRVYDGNG----- 156 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-s~s---------~dg~v~~wd~~~~~~~~~~~~~~~----- 156 (343)
+.|.+.|....+.+.....- ..+-..++-.++.++ +.+ .+..|.+||+.+.+...++..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 78999998866555433321 112122333355555 445 588999999999865544432221
Q ss_pred ccceEEEEeCC-CCEEEEEe-C-CCcEEEEEccccCCCCCeeEEecccC----------------CCCCcc--------c
Q 019258 157 LVGFNCVKWAS-PTEFVTGG-F-GYGLQWWDLRRAGSGGPVLQFKGNFG----------------SQGKAS--------G 209 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~----------------~~~~~~--------~ 209 (343)
...-..+.+++ ++.++... . +..|.+.|+.. .+.+.++....+ +..... .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCC---CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 11234677788 55555554 3 78999999877 444433221110 000000 0
Q ss_pred CeEEEE--------------EcC-CCCeEEEEEecCCcEEEEEccCC----ceeeeeecCCCCcccccCCccccEEEEEE
Q 019258 210 MIHSVD--------------IHP-SRKHTCLAGGSSGTVFAWDLRWQ----QQSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 210 ~i~~v~--------------~~p-~~~~~~~sg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
.+.... +.+ ++..+++ ..+ |+|.+.|+... ..+......... ...-..+.+.-+++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v-s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWP-TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGWRPGGWQQVAY 255 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEE-ecC-CeEEEEecCCCcceecceeeecccccc---ccccCCCcceeEEE
Confidence 111111 122 5555543 333 99999996432 222222210000 00012333445999
Q ss_pred eecCCCCcCCCCCccceEEEe----------cCCeEEEEecCCC-cccccccccccceeeecCCCCC-eeEEcc-CCceE
Q 019258 271 DCHTKSSNISSSRVLPAMFCS----------EDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPS-DVICSL-EWESI 337 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s----------~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~-~l~~~~-~~~~i 337 (343)
+|++.. ++... ..++|+++|.... ....+.-...+.++.++++ ++ .|.... .++.|
T Consensus 256 ~~dg~~----------lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D-gkp~lyvtn~~s~~V 324 (352)
T TIGR02658 256 HRARDR----------IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD-AKPLLYALSTGDKTL 324 (352)
T ss_pred cCCCCE----------EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC-CCeEEEEeCCCCCcE
Confidence 998873 44321 2247889887532 2232333567899999994 56 666555 45667
Q ss_pred EEEe
Q 019258 338 AIVS 341 (343)
Q Consensus 338 ~~~~ 341 (343)
.+++
T Consensus 325 sViD 328 (352)
T TIGR02658 325 YIFD 328 (352)
T ss_pred EEEE
Confidence 7764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.025 Score=50.36 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=120.7
Q ss_pred ccCCcccceeeEEecCCCC---CCCCeEEEEeecC--C---CCCCceeeeeCCCC----CCCCCCccCCCCCCeeEEEcc
Q 019258 13 HRFPQSKYIDAVRWLPPLS---PLSKLAVLAIYDT--D---ADSPSLETHSISLP----ASLTPHSQWTPPTRISSLSTS 80 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~---~~~~~l~t~s~D~--~---~~~~~l~~w~~~~~----~~~~~~~~~~~~~~v~~v~~~ 80 (343)
..++..+.+.+++-..-.. ...++++.|+.=. + ...-+|.++++.+. ...+.+.....+++|++++-.
T Consensus 18 ~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 18 FELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE
T ss_pred EECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh
Confidence 3445566666665444211 1357788776411 1 11125778888652 234555666778999999987
Q ss_pred CCCeEEEEcCCCcEEEEEccCce-eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEEcCCCcc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIG-GGEFKRVYDGNGLV 158 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~~~~~~ 158 (343)
.+ .|+++ .++.|.+|++...+ ........ ....++++...++.++.|.....+.++..+. ......+-......
T Consensus 98 ~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 98 NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR 173 (321)
T ss_dssp TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred CC-EEEEe-ecCEEEEEEccCcccchhhheec--ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence 44 44444 45789999998655 23222221 2237888888888999999888888875543 21233332222233
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEcccc----CCCC-CeeE-EecccCCCCCcccCeEEE---EEcC--CCC-----
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRA----GSGG-PVLQ-FKGNFGSQGKASGMIHSV---DIHP--SRK----- 221 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~----~~~~-~~~~-~~~~~~~~~~~~~~i~~v---~~~p--~~~----- 221 (343)
.++++.+.+ .+.++.+..+|.+.++..... ..+. .+.. ..-+-+ ..|+++ .+.| .+.
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg------~~v~~~~~~~l~~~~~~~~~~~~ 247 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG------DIVNSFRRGSLIPRSGSSESPNR 247 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S------S-EEEEEE--SS--SSSS-TTEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC------CccceEEEEEeeecCCCCccccc
Confidence 688888874 558999999999999877520 0011 2222 222222 557777 5555 222
Q ss_pred eEEEEEecCCcEEEE
Q 019258 222 HTCLAGGSSGTVFAW 236 (343)
Q Consensus 222 ~~~~sg~~dg~v~iw 236 (343)
..++-++.+|.|...
T Consensus 248 ~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 248 PQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEETTS-EEEE
T ss_pred ceEEEEecCCEEEEE
Confidence 235678889998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.081 Score=45.00 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=121.8
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~ 100 (343)
..+.|.+ .++.++.+-...+ +|..|+..... ...+..++ ...+.+. .+..|+.+..++ +.++|..
T Consensus 3 Egp~~d~---~~g~l~~~D~~~~-----~i~~~~~~~~~----~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 3 EGPVWDP---RDGRLYWVDIPGG-----RIYRVDPDTGE----VEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEEET---TTTEEEEEETTTT-----EEEEEETTTTE----EEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETT
T ss_pred cceEEEC---CCCEEEEEEcCCC-----EEEEEECCCCe----EEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecC
Confidence 3567887 4566666643332 34455553321 11122333 6677776 567777776655 4556877
Q ss_pred CceeeeeeccC-Cc-cccCeEEEEec--CCEEEEEeCC--------CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 101 MQVLLSVDENS-GF-HVGPISGVDLT--GSECVSVGED--------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 101 ~~~~~~~~~~~-~~-h~~~v~~~~~~--~~~~~s~s~d--------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
..+...+.... .. .....+.+.+. |...++.... |.|..++.. + ........-. ....++|++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~~~~--~pNGi~~s~d 144 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVADGLG--FPNGIAFSPD 144 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEEEES--SEEEEEEETT
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEecCcc--cccceEECCc
Confidence 54333222221 11 34467888888 7766766544 456777766 4 3444443322 478999999
Q ss_pred CCEE-EEEeCCCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 168 PTEF-VTGGFGYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 168 ~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
++.| ++-+..+.|..+|+.. ....+.. +....... +..-.++++.+| ++.++....+.|.++|.+ ++.
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDA--DGGELSNRRVFIDFPGGP----GYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEET--TTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCE
T ss_pred chheeecccccceeEEEeccc--cccceeeeeeEEEcCCCC----cCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccE
Confidence 5544 5667789899999875 2332322 21111100 247789999987 466777788999999987 443
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEe
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
...+. .. ...+.+++|-
T Consensus 217 ~~~i~----------~p-~~~~t~~~fg 233 (246)
T PF08450_consen 217 LREIE----------LP-VPRPTNCAFG 233 (246)
T ss_dssp EEEEE-----------S-SSSEEEEEEE
T ss_pred EEEEc----------CC-CCCEEEEEEE
Confidence 33332 22 3478888884
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.006 Score=59.65 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=84.2
Q ss_pred eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC----C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCC
Q 019258 132 GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA----S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG 205 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 205 (343)
.....|.-.|+++++ ++..+..+...+|..+.-. . +...+.|-.++.|..||.|. .+..+..-..+....
T Consensus 501 ~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~--~~~k~v~~~~k~Y~~- 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL--SGNKLVDSQSKQYSS- 576 (794)
T ss_pred CCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCC--CCCceeecccccccc-
Confidence 456789999999995 7777776765445655432 1 34567788899999999998 333333211111101
Q ss_pred CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 206 KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 206 ~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
.....|++-..+| .+|.|+.+|.|++|| +.+......+ .+-..+|..|..+.++..
T Consensus 577 --~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~AKT~l----------p~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 577 --KNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRAKTAL----------PGLGDPIIGIDVTADGKW 632 (794)
T ss_pred --CCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhhhhcC----------CCCCCCeeEEEecCCCcE
Confidence 1447788877766 368999999999999 3333333333 456789999999999884
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.094 Score=44.10 Aligned_cols=190 Identities=16% Similarity=0.097 Sum_probs=108.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCC-Cccc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGN-GLVG 159 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~-~~~~ 159 (343)
.++.+++++.++.+..||..+++.+-........... ....+..++.+..++.+..+|..+++...+..... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 5678888899999999998766544322221111112 23337778888888999999999986555532222 1101
Q ss_pred -eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc---ccCe-EEEEEcCCCCeEEEEEecCCcE
Q 019258 160 -FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA---SGMI-HSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 160 -v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~i-~~v~~~p~~~~~~~sg~~dg~v 233 (343)
........ ++.++.+..++.|..+|+++ ++.+............+ ...+ ..+.+. ++ .++ .++.+|.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~ 185 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKT---GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRV 185 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTT---TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEE-EECCTSSE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCC---CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEE-EEcCCCeE
Confidence 11112111 67788888899999999998 77777766532110000 0011 233333 33 444 55667754
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.-+|+++++... .. . ...+..+ ...++. .++.++.++.|..||...
T Consensus 186 ~~~d~~tg~~~w-~~----------~--~~~~~~~-~~~~~~----------~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 186 VAVDLATGEKLW-SK----------P--ISGIYSL-PSVDGG----------TLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEETTTTEEEE-EE----------C--SS-ECEC-EECCCT----------EEEEEETTTEEEEEETTT
T ss_pred EEEECCCCCEEE-Ee----------c--CCCccCC-ceeeCC----------EEEEEeCCCEEEEEECCC
Confidence 444999876443 22 1 1222221 233444 577777899999999753
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.075 Score=53.43 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=116.1
Q ss_pred cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEc----ccc
Q 019258 116 GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDL----RRA 188 (343)
Q Consensus 116 ~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~----~~~ 188 (343)
..|.++++. ...++.+..+|.|.+-|..+. .......-+. +|.+++|+| ...++-.+.+.++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~-GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~- 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDN-GISAASWSPDEELLALITGRQTLLFMTKDFEPIA- 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccC-ceEEEeecCCCcEEEEEeCCcEEEEEeccccchh-
Confidence 589999998 788888899999999988775 2333333333 799999999 777777777777766332 11
Q ss_pred CCCCCe-------------------eEEecccCCC-----CC---------cccCeEEEEEcCCCCeEEEEEe----cC-
Q 019258 189 GSGGPV-------------------LQFKGNFGSQ-----GK---------ASGMIHSVDIHPSRKHTCLAGG----SS- 230 (343)
Q Consensus 189 ~~~~~~-------------------~~~~~~~~~~-----~~---------~~~~i~~v~~~p~~~~~~~sg~----~d- 230 (343)
.+++ .+|.+..+.+ .. ....=.+|.|--+|.+ ||+.. .+
T Consensus 145 --E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 --EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGT 221 (1265)
T ss_pred --ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCc
Confidence 1111 1232222100 00 0012335888887764 44411 23
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE---ecCCeEEEEecCCCccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC---SEDGILAVVEQGEEPFE 307 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~---s~dg~i~~~~~~~~~~~ 307 (343)
+.|++||-. +. ..... ..-.+.-.+++|-|.+. .+++- ++|+.|..++.+.....
T Consensus 222 RkirV~drE-g~-Lns~s----------e~~~~l~~~LsWkPsgs----------~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 222 RKIRVYDRE-GA-LNSTS----------EPVEGLQHSLSWKPSGS----------LIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eeEEEeccc-ch-hhccc----------CcccccccceeecCCCC----------eEeeeeecCCCCcEEEEecCCcccc
Confidence 789999965 21 11111 22233345799999766 45543 45667888887543221
Q ss_pred -----ccccccccceeeecCCCCCeeEE---ccCCceEEEEe
Q 019258 308 -----LLAEPCAINSFDIDPQNPSDVIC---SLEWESIAIVS 341 (343)
Q Consensus 308 -----~~~~~~~i~s~~~~~~~~~~l~~---~~~~~~i~~~~ 341 (343)
...+..++..+.|+. +++.|+. ......|++|+
T Consensus 280 ~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEE
Confidence 111124499999997 4466665 55666799886
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.13 Score=51.71 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=109.2
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
++.|.++.+.. +.+-++.+..+++ +-+-+..+. .++.. -.-...|.+++|+ ++..++..+..+++.+
T Consensus 68 d~~i~s~~fl~----d~~~i~v~~~~G~-----iilvd~et~-~~eiv--g~vd~GI~aaswS~Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFLA----DTNSICVITALGD-----IILVDPETL-ELEIV--GNVDNGISAASWSPDEELLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEec----ccceEEEEecCCc-----EEEEccccc-ceeee--eeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence 35777888877 4444555555544 223333221 11111 1234679999999 8899998888888876
Q ss_pred EEcc----Cceee-----------ee--------eccCCc---------cc---------cCeEEEEec--CCEEEEEe-
Q 019258 97 LSSA----MQVLL-----------SV--------DENSGF---------HV---------GPISGVDLT--GSECVSVG- 132 (343)
Q Consensus 97 ~~~~----~~~~~-----------~~--------~~~~~~---------h~---------~~v~~~~~~--~~~~~s~s- 132 (343)
-... ..+.+ .+ .+...+ |. ..=+.+.|- |++|+...
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 6541 00011 00 000000 00 011347787 66776632
Q ss_pred ---CC-CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe---CCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 133 ---ED-GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG---FGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 133 ---~d-g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.+ ..+++||-+ + .....-..... .-.+++|-| +..+++-. .|+.|.+|.-. +..-..|.......
T Consensus 216 ~~~~~~RkirV~drE-g-~Lns~se~~~~-l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN----GL~hg~f~l~~p~d 288 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-G-ALNSTSEPVEG-LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN----GLRHGEFVLPFPLD 288 (1265)
T ss_pred eccCCceeEEEeccc-c-hhhcccCcccc-cccceeecCCCCeEeeeeecCCCCcEEEEecC----CccccccccCCccc
Confidence 33 789999977 3 23333222222 456889999 55555543 36678888642 22111222111111
Q ss_pred CCcccCeEEEEEcCCCCeEEEE---EecCCcEEEEEccCC
Q 019258 205 GKASGMIHSVDIHPSRKHTCLA---GGSSGTVFAWDLRWQ 241 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~s---g~~dg~v~iwd~~~~ 241 (343)
..++..++|+.++. +++. ..+...|++|-+.+-
T Consensus 289 ---e~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 289 ---EKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ---ccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 14489999998865 5555 445555999988663
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0039 Score=57.92 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=69.6
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE-EEEEcCCCCeEEEEEecCCcEEEE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH-SVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
.+.-+.|+| -..++++..+|.|.+.-+.- +.+.++.-+. ..++ +++|.|+|. ++|.|-.||+|++-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~----qRlwtip~p~-------~~v~~sL~W~~DGk-llaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW----QRLWTIPIPG-------ENVTASLCWRPDGK-LLAVGFKDGTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc----ceeEeccCCC-------CccceeeeecCCCC-EEEEEecCCeEEEE
Confidence 588999999 88999999999999887644 5556665333 3344 999999974 77999999999999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
|..++....... -.-+..|..+.|.|
T Consensus 90 Dve~~~~l~~~~----------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFL----------FSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccc----------cccccchheeeccc
Confidence 999876554432 12356777888864
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.31 Score=46.38 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=86.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce---eeeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV---LLSVD 108 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~---~~~~~ 108 (343)
..++++.|+.-+. |.+++-......+..... -.+.+..+..+ .+.+.++|+..|.|.++.++... .+.+.
T Consensus 44 t~~~l~~GsS~G~-----lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 44 TEEYLAMGSSAGS-----VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred CCceEEEecccce-----EEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 5677888775543 557766443222111111 22333344444 67888899999999999987422 22333
Q ss_pred ccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc----eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEE
Q 019258 109 ENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG----EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQW 182 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~i 182 (343)
+....|...|+++.|+ +..+.+|...|+|.+-.++... ....+.. -++ .|-.+.+.....|++... +. .+
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds-~IVQlD~~q~~LLVStl~-r~-~L 193 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDS-EIVQLDYLQSYLLVSTLT-RC-IL 193 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCc-ceEEeecccceehHhhhh-hh-he
Confidence 3444578899999999 8899999999999988776611 1122222 222 577777665544444433 32 34
Q ss_pred EEccc
Q 019258 183 WDLRR 187 (343)
Q Consensus 183 wd~~~ 187 (343)
++.+.
T Consensus 194 c~tE~ 198 (726)
T KOG3621|consen 194 CQTEA 198 (726)
T ss_pred eecch
Confidence 55544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0086 Score=56.37 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=92.6
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
..+|++ .....++.|++-|.+.+|.-.. .....++... ..+.+..+..+++. +++|+|+..|.|.++-+
T Consensus 37 ~lTc~d-st~~~l~~GsS~G~lyl~~R~~----~~~~~~~~~~-----~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 37 KLTCVD-ATEEYLAMGSSAGSVYLYNRHT----GEMRKLKNEG-----ATGITCVRSVSSVE-YLVAAGTASGRVSVFQL 105 (726)
T ss_pred EEEEee-cCCceEEEecccceEEEEecCc----hhhhcccccC-----ccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence 345554 2267899999999999998644 3333333211 11556677778875 67889999999999987
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC------Ccccccccc
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE------EPFELLAEP 312 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~------~~~~~~~~~ 312 (343)
.. +.|..+.-+.. .+..|...|++++|++++- .+++|-.-|.|-.-+.+. ...+++..+
T Consensus 106 ~~-~~p~~~~~~t~----~d~~~~~rVTal~Ws~~~~----------k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 106 NK-ELPRDLDYVTP----CDKSHKCRVTALEWSKNGM----------KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hc-cCCCcceeecc----ccccCCceEEEEEeccccc----------EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 66 33332221111 1134788999999999987 799999999986654432 234566667
Q ss_pred cccceeeecC
Q 019258 313 CAINSFDIDP 322 (343)
Q Consensus 313 ~~i~s~~~~~ 322 (343)
.+|-.+|...
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 8888898875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.35 Score=44.57 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=94.8
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeecc---CCccccCeEEEEecCC
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDEN---SGFHVGPISGVDLTGS 126 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~ 126 (343)
.|++++..+.... ...+.. +.|.++.|.+...|+.-..||.+++|++.......+... .......+....+.+.
T Consensus 62 ~I~iys~sG~ll~--~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGKLLS--SIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCCEeE--EEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 4788888654322 122334 799999999777788888999999999863221111110 0011122222222212
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEEcCCCc-------cceEE-EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 127 ECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGL-------VGFNC-VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~-------~~v~~-~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
-++.-..++.+.+-.--... .......-... ..... ..+.. ....+....++.+.+-+-.. .++
T Consensus 139 GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~---~~~--- 212 (410)
T PF04841_consen 139 GIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS---FKQ--- 212 (410)
T ss_pred CEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc---ccc---
Confidence 23333334444433221111 11111110100 00111 11122 23334444445555333222 111
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+. .. +++..++++|+++.+ |.-..+|.+.+.+..-.+....+. ..-.....+|.|+.++.
T Consensus 213 i~-~~-------~~i~~iavSpng~~i-Al~t~~g~l~v~ssDf~~~~~e~~----------~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ID-SD-------GPIIKIAVSPNGKFI-ALFTDSGNLWVVSSDFSEKLCEFD----------TDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cc-CC-------CCeEEEEECCCCCEE-EEEECCCCEEEEECcccceeEEee----------cCcCCCCcEEEEECCCc
Confidence 11 11 679999999998754 666788999888754332222222 12234566888886543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.36 Score=44.11 Aligned_cols=236 Identities=10% Similarity=0.014 Sum_probs=119.8
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceee----------------------------------------eeeccC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLL----------------------------------------SVDENS 111 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~----------------------------------------~~~~~~ 111 (343)
.|+.+.|. +..-|++|..+|.|-||+...++.. ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888888 6677999999999999987521110 000001
Q ss_pred CccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE-cC-----CCccceEEEEeCC---------CCEEEEEe
Q 019258 112 GFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY-DG-----NGLVGFNCVKWAS---------PTEFVTGG 175 (343)
Q Consensus 112 ~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~-----~~~~~v~~~~~~~---------~~~l~t~~ 175 (343)
....++|++++.+ -..++.|..+|.+.+.|++.+..+.... .. ...+.+++++|.- .-.++.|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 1235789999998 7788899999999999998764322211 11 2234688888852 34688999
Q ss_pred CCCcEEEEEccccCCCCCeeEEeccc-CCCCCcccCeEEEE-EcCC--------------------CCeEEEEEecCCcE
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNF-GSQGKASGMIHSVD-IHPS--------------------RKHTCLAGGSSGTV 233 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~-~~p~--------------------~~~~~~sg~~dg~v 233 (343)
..|.+.+|.+.-...+.-...+.... ... ++|..+. ++.+ .+.+++ ...+..+
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~----~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~i 237 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHD----SPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDI 237 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS--------EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEE
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCC----CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccce
Confidence 99999999886200111111222111 111 4444444 2111 112333 3456789
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee----cCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC----HTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL 309 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p----~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~ 309 (343)
+++..-+.....+.. . ..-....+.+-+ .... .|+.-..+|.++++....-. ++.
T Consensus 238 rv~~~~~~k~~~K~~----------~-~~~~~~~~~vv~~~~~~~~~---------~Lv~l~~~G~i~i~SLP~Lk-ei~ 296 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF----------D-DPFLCSSASVVPTISRNGGY---------CLVCLFNNGSIRIYSLPSLK-EIK 296 (395)
T ss_dssp EEE-TT---EEEEE-----------S-S-EEEEEEEEEEEE-EEEEE---------EEEEEETTSEEEEEETTT---EEE
T ss_pred EEEeCCCCcccceee----------c-cccccceEEEEeecccCCce---------EEEEEECCCcEEEEECCCch-Hhh
Confidence 999887654433333 1 112223334421 1222 57777999999998875421 111
Q ss_pred c-------cccccceeeecCCCCCeeEEccCCc
Q 019258 310 A-------EPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 310 ~-------~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
. +...+....+.+ +|+.+.-.+..+
T Consensus 297 ~~~l~~~~d~~~~~~ssis~-~Gdi~~~~gpsE 328 (395)
T PF08596_consen 297 SVSLPPPLDSRRLSSSSISR-NGDIFYWTGPSE 328 (395)
T ss_dssp EEE-SS---HHHHTT-EE-T-TS-EEEE-SSSE
T ss_pred cccCCCccccccccccEECC-CCCEEEEeCccc
Confidence 1 112345556665 567766666554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.045 Score=53.76 Aligned_cols=143 Identities=10% Similarity=0.067 Sum_probs=91.1
Q ss_pred CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-------CCEEEEEeCCCcEEEEECCCCc-eEEEE
Q 019258 81 HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-------GSECVSVGEDGRVNLVSVIGGG-EFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~-~~~~~ 151 (343)
+..+|+.-- ....++-.|+..+.-+ .+|......+|..+.-. ....+.|-.+..+..||.+-.. .+...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV--~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVV--EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEE--EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 334444433 3466777777755433 34432333457777653 4456677778889999997632 22211
Q ss_pred --EcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 152 --YDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 152 --~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
..........|++-...+.++.|+.+|.||+||- . +..-++ +.+.. .||..|+...+|.++++|+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~---g~~AKT~lp~lG-------~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-L---GKRAKTALPGLG-------DPIIGIDVTADGKWILATC- 637 (794)
T ss_pred cccccccCCCceEEEecCCceEEEEeCCCcEEeecc-c---chhhhhcCCCCC-------CCeeEEEecCCCcEEEEee-
Confidence 1111223578887667889999999999999993 3 332223 43333 8899999999999988764
Q ss_pred cCCcEEEEEc
Q 019258 229 SSGTVFAWDL 238 (343)
Q Consensus 229 ~dg~v~iwd~ 238 (343)
+..+.++|.
T Consensus 638 -~tyLlLi~t 646 (794)
T PF08553_consen 638 -KTYLLLIDT 646 (794)
T ss_pred -cceEEEEEE
Confidence 457778875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.16 Score=47.14 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=86.4
Q ss_pred eEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEE-EccccCCCCCee
Q 019258 118 ISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWW-DLRRAGSGGPVL 195 (343)
Q Consensus 118 v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iw-d~~~~~~~~~~~ 195 (343)
...++++ ...++..+.||.-.++.....+ .... + .-....|.+.+.+++-...++|+++ ++.. ....
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~r-~k~~--G----~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~----~~~k 103 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWR-NKAF--G----SGLSFVWSSRNRYAVLESSSTIKIYKNFKN----EVVK 103 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTTE-EEEE--E----E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-----TT-
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCCc-cccc--C----ceeEEEEecCccEEEEECCCeEEEEEcCcc----ccce
Confidence 4667777 4455555778888888844332 2211 1 2446678887788888889999996 4433 3323
Q ss_pred EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
.+... ..+..+- + |.- +... .++.|.+||..+......+. ..+|..|.|++++.
T Consensus 104 ~i~~~--------~~~~~If--~-G~L-L~~~-~~~~i~~yDw~~~~~i~~i~-------------v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 104 SIKLP--------FSVEKIF--G-GNL-LGVK-SSDFICFYDWETGKLIRRID-------------VSAVKYVIWSDDGE 157 (443)
T ss_dssp ----S--------S-EEEEE----SSS-EEEE-ETTEEEEE-TTT--EEEEES-------------S-E-EEEEE-TTSS
T ss_pred EEcCC--------cccceEE--c-CcE-EEEE-CCCCEEEEEhhHcceeeEEe-------------cCCCcEEEEECCCC
Confidence 33311 1122332 2 553 3333 44589999998854433332 34599999999876
Q ss_pred CCcCCCCCccceEEEecCCeEEEEecCCC------------ccccccc-ccccceeeecCCCCCeeEEccCC
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQGEE------------PFELLAE-PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~~~~------------~~~~~~~-~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+++-.+ +..+++++...+ ..++..+ ...|.|..|.. +.++..+..
T Consensus 158 ----------~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~---d~fiYtT~~ 215 (443)
T PF04053_consen 158 ----------LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE---DCFIYTTSN 215 (443)
T ss_dssp ----------EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET---TEEEEE-TT
T ss_pred ----------EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc---CEEEEEcCC
Confidence 566665 446777776655 6677777 67899999887 344444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0036 Score=34.95 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=24.6
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
..+.++.++|.+ .++++++.|+.+++||
T Consensus 13 ~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 679999999977 4678999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.43 Score=43.97 Aligned_cols=49 Identities=35% Similarity=0.444 Sum_probs=38.3
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.|++|+.. +..+....+.. +.+.++.|+ .+.|+....||+++++|+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCC-CCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 48888876 33454455542 799999999 889999999999999998644
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=60.82 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=94.1
Q ss_pred ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC-cEEEEEccc
Q 019258 113 FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY-GLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~-~i~iwd~~~ 187 (343)
.|...-+|++|+ .+.++.|+..|.|+++++.++. ....+.+|.+ .++-+.-+. +..+++.+. .. -..+|++..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~S-avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQS-AVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcc-cccccccccc-ccccccccCCcceeeeeccccCchHHHhcccc
Confidence 466778999999 7789999999999999999984 6666677877 888887665 555555444 33 578999977
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.+.+.++|.. -.++.|+..-..- +.|+.-..+.+||+.+......++... -+..-.=+.
T Consensus 1177 --~~~~~Hsf~e-----------d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~-------~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1177 --TGGPRHSFDE-----------DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDT-------VTSSYSNNL 1235 (1516)
T ss_pred --ccCccccccc-----------cceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcc-------hhhhhhccc
Confidence 4555555542 3477777653332 456666789999998865544433111 011112266
Q ss_pred EEEeecCC
Q 019258 268 VQYDCHTK 275 (343)
Q Consensus 268 v~~~p~~~ 275 (343)
..|+|++.
T Consensus 1236 a~FsP~D~ 1243 (1516)
T KOG1832|consen 1236 AHFSPCDT 1243 (1516)
T ss_pred cccCCCcc
Confidence 78888876
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.13 Score=49.42 Aligned_cols=193 Identities=17% Similarity=0.109 Sum_probs=96.4
Q ss_pred CCCeEEEEeec-CCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCc-----EEEEEccCceeee
Q 019258 33 LSKLAVLAIYD-TDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGS-----LHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D-~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~-----v~v~~~~~~~~~~ 106 (343)
.+.++++|++| +.....+++.+|...+. +..+..+..+..=.+++-.++.+.++|+.||. +..||...++--.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 45788999999 44333455677765544 43344444433333444447888999999874 5555554322111
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCCc------EEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCc-
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDGR------VNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYG- 179 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~------v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~- 179 (343)
..... ..........+.+...+.||.++. +..||..+++ -...-.-...-.-..++...+...+.||.|+.
T Consensus 411 va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 411 VAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred cCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-eeecCCcccccccceEEEECCEEEEECCccCCC
Confidence 11111 111122223333778888886653 5567776653 11111111100122244344667777877763
Q ss_pred ----EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-----EEEEEcc
Q 019258 180 ----LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-----VFAWDLR 239 (343)
Q Consensus 180 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-----v~iwd~~ 239 (343)
|..||.+. .....+......+ ..+..+.+ +..+++.|+.||. |..||..
T Consensus 489 ~~~~VE~ydp~~----~~W~~v~~m~~~r----s~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 489 ALSSVERYDPET----NQWTMVAPMTSPR----SAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred ccceEEEEcCCC----CceeEcccCcccc----ccccEEEE---CCEEEEEecccCccccceeEEcCCC
Confidence 67788766 2232222111001 22222222 3467788887774 4455543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0048 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 259 SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 259 ~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..|...|.++.|++... .+++++.||.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~----------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGK----------YLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCC----------EEEEecCCCeEEEcC
Confidence 45778999999999875 799999999999985
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.46 Score=41.31 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=113.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCe--eEEEcc-CCCeEEEEc----
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRI--SSLSTS-HQSLVAAST---- 89 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v--~~v~~~-~~~~l~~~s---- 89 (343)
-+.+-..++.+| ..+..++.+-..++ .+.++|.........+ ...++.- ---.|+ ++++|++.=
T Consensus 3 lP~RgH~~a~~p---~~~~avafaRRPG~----~~~v~D~~~g~~~~~~--~a~~gRHFyGHg~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 3 LPARGHGVAAHP---TRPEAVAFARRPGT----FALVFDCRTGQLLQRL--WAPPGRHFYGHGVFSPDGRLLYTTENDYE 73 (305)
T ss_pred CCccccceeeCC---CCCeEEEEEeCCCc----EEEEEEcCCCceeeEE--cCCCCCEEecCEEEcCCCCEEEEeccccC
Confidence 344566777777 34555666654443 3456666433222111 1111211 134577 788888863
Q ss_pred -CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe------------------CCCcEEEEECCCCceE
Q 019258 90 -LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG------------------EDGRVNLVSVIGGGEF 148 (343)
Q Consensus 90 -~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s------------------~dg~v~~wd~~~~~~~ 148 (343)
..|.|-|||... ....+-++...--+| ..+.+. ++.|+.+- .+-.+...|..+++..
T Consensus 74 ~g~G~IgVyd~~~-~~~ri~E~~s~GIGP-Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 74 TGRGVIGVYDAAR-GYRRIGEFPSHGIGP-HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred CCcEEEEEEECcC-CcEEEeEecCCCcCh-hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 468999999982 122223332211122 333333 43444432 2334444555665423
Q ss_pred EEEEc--CCCccceEEEEeCCCCEEEEEeC-CCc-------EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 149 KRVYD--GNGLVGFNCVKWASPTEFVTGGF-GYG-------LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 149 ~~~~~--~~~~~~v~~~~~~~~~~l~t~~~-d~~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.+..- .....++.-+++.+...++.+.. .+. |-+++ . ++++..+.........-.+.+-+|++++
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--R---GGALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--C---CCcceeccCChHHHHhhCCceEEEEEeC
Confidence 22211 22222577777776444443432 211 11221 1 2222222211100000016799999999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
++..+.+|+=.-+.+.+||..+++...... -..+..|+-.++
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-------------l~D~cGva~~~~ 268 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVP-------------LPDACGVAPTDD 268 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeeccc-------------cCceeeeeecCC
Confidence 988777777778899999998865433322 345667766654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.19 Score=48.34 Aligned_cols=195 Identities=6% Similarity=-0.057 Sum_probs=90.6
Q ss_pred CCCeEEEEeecC-CCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDT-DADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~-~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~ 106 (343)
++..++.|+.+. ....-.++.++...+. +..+..++.+-.-.+++..++.+.+.|+.++ .+..||...+.-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 446677777642 1111235566654432 2333333332222233333677778887754 47778876443222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCC-----------------------cEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDG-----------------------RVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg-----------------------~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
..... ........+...+...+.||.++ .+..||..+.+ -...-.......-.++
T Consensus 382 ~~~mp-~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMP-IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCC-cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCcccccCcE
Confidence 22111 11111122233477777777653 36667776652 2111111110001122
Q ss_pred EeCCCCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEE
Q 019258 164 KWASPTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFA 235 (343)
Q Consensus 164 ~~~~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~i 235 (343)
....+...+.||.+ ..+..||.+. ......+......+ .....+.+ +..+++.|+.|| .+..
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~---~~~W~~~~~m~~~r----~~~~~~~~---~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNT---YNGWELITTTESRL----SALHTILH---DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCC---CCCeeEccccCccc----ccceeEEE---CCEEEEEeeecceeehhh
Confidence 22335566667654 2356788754 12232222111101 22233333 246888999888 6777
Q ss_pred EEccC
Q 019258 236 WDLRW 240 (343)
Q Consensus 236 wd~~~ 240 (343)
||..+
T Consensus 530 yd~~~ 534 (557)
T PHA02713 530 FNVYT 534 (557)
T ss_pred cCccc
Confidence 77765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0068 Score=58.30 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=77.7
Q ss_pred EEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 161 NCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
+-.+|+| ...|+.++. .|.|.||-- + ++|-....-. -.+++++|||. ..+++.|-+-|.+.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-t---GEPqr~Vt~P--------~hatSLCWHpe-~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-T---GEPQRDVTYP--------VHATSLCWHPE-EFVLAQGWEMGVSDV 85 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-C---CCCCcccccc--------eehhhhccChH-HHHHhhccccceeEE
Confidence 3457888 666665543 677888742 2 4443333211 23668999997 467889999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
|.....+. .... ..|..+|..+.|++++. .++++..-|.+..|...
T Consensus 86 ~~~~~~e~-htv~----------~th~a~i~~l~wS~~G~----------~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTET-HTVV----------ETHPAPIQGLDWSHDGT----------VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCcee-eeec----------cCCCCCceeEEecCCCC----------eEEEcCCCceeEEEEee
Confidence 98766333 2333 56999999999999988 79999999999999865
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.49 Score=39.78 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=75.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
..+++.++..+.++--|..+++...+.+-+. .+-+-+.--++.++.|.+.|.+.+.+..+ +..+..+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~---RiE~sa~vvgdfVV~GCy~g~lYfl~~~t---Gs~~w~f~~~~--- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV---RIECSAIVVGDFVVLGCYSGGLYFLCVKT---GSQIWNFVILE--- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc---eeeeeeEEECCEEEEEEccCcEEEEEecc---hhheeeeeehh---
Confidence 4567888899999988988885443333222 23333333477899999999999999998 77777766443
Q ss_pred CCcccCeE-EEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 205 GKASGMIH-SVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 205 ~~~~~~i~-~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.|. .....+++ .++..|+.|++.+..|.++.....+..
T Consensus 94 -----~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 -----TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -----hhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecc
Confidence 122 23345555 467899999999999999866655543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.89 Score=41.61 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=88.8
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc-CCCCCcccCeEEEEEcC-----CC--CeEEEEEecC
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-GSQGKASGMIHSVDIHP-----SR--KHTCLAGGSS 230 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p-----~~--~~~~~sg~~d 230 (343)
.|++++.+.-..++.|..+|.+.+.|+|. ...+.+-.... ...+.....++++.|.- ++ .-++++|+..
T Consensus 88 ~vtal~~S~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 88 PVTALKNSDIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp SEEEEEE-BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred cEeEEecCCCcEEEEEecCCcEEEEECCC---CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 78999987777788888899999999987 55555422111 01112225688887762 11 2467889999
Q ss_pred CcEEEEEccC-Cc--eeeeeecCCCCcccccCCccccEEEEE-EeecCCCC----------cCCCCCccceEEEecCCeE
Q 019258 231 GTVFAWDLRW-QQ--QSIVLSGVGTGEAVTHSLSESEVWEVQ-YDCHTKSS----------NISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 231 g~v~iwd~~~-~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~~----------~~~~~~~~~l~s~s~dg~i 296 (343)
|.+.+|.+-- .. ....+.... ..+.+.|..|. ++.+.... ...+..+..++....+..+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred CCEEEEEEecCCCCceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 9999998742 11 222222100 23566776666 33332211 0111122234555557778
Q ss_pred EEEecCCC--cccccccccccceeeec----CCCCCeeEEccCCceEEEEeCC
Q 019258 297 AVVEQGEE--PFELLAEPCAINSFDID----PQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 297 ~~~~~~~~--~~~~~~~~~~i~s~~~~----~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+++..... .......+....+..+- ...+..|+|=..++.|+++.-|
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 88776432 12222222222222221 1134789999999999999866
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.27 Score=45.38 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=81.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--------CCEEEEEeCCCcEEEEEccccCCCC-CeeEE
Q 019258 127 ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--------PTEFVTGGFGYGLQWWDLRRAGSGG-PVLQF 197 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~ 197 (343)
.+.++.....++-.|++.++ +...+..+.. |.-+.+.| ...-+.|-+|+.|.-||.|- .+. .+...
T Consensus 348 il~~~~~~~~l~klDIE~GK-IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv--~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV--QGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccce-eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccc--cCcceeeee
Confidence 34566666778888999995 6666666665 55555544 12234466788899999997 333 22222
Q ss_pred ecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 198 KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 198 ~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
.++....+ .-..|.+-..+| .+++|+.+|.|++||- .+......+ ++...+|..|..+.++..
T Consensus 423 q~kqy~~k---~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAl----------PgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 423 QSKQYSTK---NNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTAL----------PGLGDAIKHVDVTADGKW 485 (644)
T ss_pred eccccccc---cccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcc----------cccCCceeeEEeeccCcE
Confidence 22221111 235566655554 4688999999999994 333333333 556788999999988873
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.1 Score=41.64 Aligned_cols=139 Identities=8% Similarity=0.022 Sum_probs=73.4
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
....+.++ +++.+++ ..||...||.....+. ...+....+.|. .+.++.-...++|.++.--+......
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--------EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--------cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 46788888 5555555 7888888887432211 123455677787 67788888889999963322211112
Q ss_pred EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 151 VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
+ .... .+..+- ++..|... .++.|.+||..+ ++.+.++.. .+|..|.|++++..+.+. + +
T Consensus 105 i-~~~~--~~~~If--~G~LL~~~-~~~~i~~yDw~~---~~~i~~i~v---------~~vk~V~Ws~~g~~val~-t-~ 164 (443)
T PF04053_consen 105 I-KLPF--SVEKIF--GGNLLGVK-SSDFICFYDWET---GKLIRRIDV---------SAVKYVIWSDDGELVALV-T-K 164 (443)
T ss_dssp ----SS---EEEEE---SSSEEEE-ETTEEEEE-TTT-----EEEEESS----------E-EEEEE-TTSSEEEEE---S
T ss_pred E-cCCc--ccceEE--cCcEEEEE-CCCCEEEEEhhH---cceeeEEec---------CCCcEEEEECCCCEEEEE-e-C
Confidence 2 1111 233332 24445544 455899999988 777777762 238999999998765443 4 4
Q ss_pred CcEEEEEccC
Q 019258 231 GTVFAWDLRW 240 (343)
Q Consensus 231 g~v~iwd~~~ 240 (343)
..+.+++...
T Consensus 165 ~~i~il~~~~ 174 (443)
T PF04053_consen 165 DSIYILKYNL 174 (443)
T ss_dssp -SEEEEEE-H
T ss_pred CeEEEEEecc
Confidence 4777877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.72 E-value=1 Score=42.44 Aligned_cols=155 Identities=8% Similarity=0.109 Sum_probs=89.9
Q ss_pred CeEEEEec-CCEEEEEe---CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-----CCEEEEEeCCCcEEEEEccc
Q 019258 117 PISGVDLT-GSECVSVG---EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-----PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 117 ~v~~~~~~-~~~~~s~s---~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~t~~~d~~i~iwd~~~ 187 (343)
++.+++|. |+.++-.. ..|.+++=| . .+...++ .|..+.|.| ...+++.-..+.|.+|.+-.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s-~viGqFE-----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---S-KVIGQFE-----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---c-cEeeccc-----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 89999998 76665432 344444322 1 2333332 489999988 23688899999999999863
Q ss_pred cCC--CCCeeE--EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccc
Q 019258 188 AGS--GGPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 188 ~~~--~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 263 (343)
... .+.+.. .+..+. -+---..+-|||... +++.=.....=.+++.+....++..- -.-.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~----~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaD----------i~~~G 156 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREP----FPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKAD----------IKTSG 156 (671)
T ss_pred CccccccceeeeeeeccCC----cccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEe----------ccCCc
Confidence 000 111111 111000 001133567999875 44444443333566776654444432 22357
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
-|.+.+|.+|++. .+++.+..=.-++||...+
T Consensus 157 ~IhCACWT~DG~R---------LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 157 LIHCACWTKDGQR---------LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEEecCcCCE---------EEEEeCCeEEEEEecCchh
Confidence 7999999999985 4555555445689998655
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.042 Score=33.29 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=29.3
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~ 100 (343)
.-..+.+|..++|+ ..++||.++.+|.|.+|+++
T Consensus 7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 33455679999999 88999999999999999985
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.3 Score=38.23 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=115.0
Q ss_pred CCCeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE-------
Q 019258 81 HQSLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR------- 150 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~------- 150 (343)
.++.|+.|+.+| +.+|++. ......+. +..+|..+... -+.++.-+ |+.+.++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 578899999999 8999883 22222222 33348888887 34444444 49999999876321110
Q ss_pred -------EEcCCCccceEEEE---eCCCCEEEEEeCCCcEEEEEccccC-CC-CCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 151 -------VYDGNGLVGFNCVK---WASPTEFVTGGFGYGLQWWDLRRAG-SG-GPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 151 -------~~~~~~~~~v~~~~---~~~~~~l~t~~~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
...... .+...+ -......+.....++|.+|...... .. ....++... ..+..++|.+
T Consensus 79 ~~~~~~~~~~~~~--~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--------~~~~~i~~~~ 148 (275)
T PF00780_consen 79 KSRSLPTKLPETK--GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--------DPPSSIAFLG 148 (275)
T ss_pred ccccccccccccC--CeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--------CCcEEEEEeC
Confidence 111111 344444 1124555666667799999886610 11 233444432 5688999985
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc-c-ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA-V-THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+ . ++.|.. ....+.|+.++ .+..+........ . .......++..+... ++ .++-|-++-.+
T Consensus 149 ~--~-i~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------e~Ll~~~~~g~ 211 (275)
T PF00780_consen 149 N--K-ICVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-----------EFLLCYDNIGV 211 (275)
T ss_pred C--E-EEEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-----------eEEEEecceEE
Confidence 3 3 445554 45889999863 3333321110000 0 000011223333332 22 23334444344
Q ss_pred EEEecCCCcc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 297 AVVEQGEEPF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 297 ~~~~~~~~~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+=..+.... ..+.=.....++.+.. .||++-+++ .|.|++
T Consensus 212 fv~~~G~~~r~~~i~W~~~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWSSAPQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEcCCCCcCcccEEEcCCchhEEEEEC---CEEEEECCC-EEEEEE
Confidence 4433332222 1111134667888876 688888765 588875
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.8 Score=41.75 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=98.0
Q ss_pred CCCeEEEEeecCC-CCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-C-----cEEEEEccCceee
Q 019258 33 LSKLAVLAIYDTD-ADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-G-----SLHVLSSAMQVLL 105 (343)
Q Consensus 33 ~~~~l~t~s~D~~-~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-g-----~v~v~~~~~~~~~ 105 (343)
.+.+++.|++++. ...-.++.+|...+ .+..+..++.+..-.+++..++.++++|+.| | ++..||...++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4567788888752 11123556666543 2444555555555566666677888999888 3 4556666544433
Q ss_pred eeeccCCccccCeEEEEecCCEEEEEeCCCc-----EEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCC--
Q 019258 106 SVDENSGFHVGPISGVDLTGSECVSVGEDGR-----VNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGY-- 178 (343)
Q Consensus 106 ~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~-----v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~-- 178 (343)
...... ............|...+.||.||. +-.||..+.+ -...-.....-.-.+++-..+...+.||.++
T Consensus 363 ~~a~M~-~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMN-TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCcc-CccccceeEEECCEEEEEeccccccccccEEEecCCCCc-ccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 322211 111111222223788889998864 5567766542 1111000000011122222356677777543
Q ss_pred ----cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-----EEEEEccC
Q 019258 179 ----GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-----VFAWDLRW 240 (343)
Q Consensus 179 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-----v~iwd~~~ 240 (343)
.+..||.++ ............+ ... .++.-. ..|++.|+.||. |..||.++
T Consensus 441 ~~l~sve~YDP~t----~~W~~~~~M~~~R----~~~-g~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 441 NCLNSVECYDPET----NTWTLIAPMNTRR----SGF-GVAVLN--GKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cccceEEEEcCCC----CceeecCCccccc----ccc-eEEEEC--CEEEEECCccCCCccceEEEEcCCC
Confidence 456677765 2222222111111 112 233322 468888998873 67777765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.22 Score=45.89 Aligned_cols=135 Identities=21% Similarity=0.178 Sum_probs=87.2
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-------eEEEEEecCCcEEEEEccCCc
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-------HTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-------~~~~sg~~dg~v~iwd~~~~~ 242 (343)
.+.++.....|+-.|++. ++.+...+.+. -|+-+.+.|+.. .. +.|=+|..|+-||+|-..
T Consensus 348 il~~~~~~~~l~klDIE~---GKIVeEWk~~~--------di~mv~~t~d~K~~Ql~~e~T-lvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIER---GKIVEEWKFED--------DINMVDITPDFKFAQLTSEQT-LVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred EeeCCCCcCcceeeeccc---ceeeeEeeccC--------CcceeeccCCcchhccccccc-EEeecCCceEEecccccC
Confidence 344555567777788888 77777766553 266677776532 12 347789999999998643
Q ss_pred e-eeeeecCCCCcccccCCcc----ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCccccccc-cccc
Q 019258 243 Q-SIVLSGVGTGEAVTHSLSE----SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAE-PCAI 315 (343)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~-~~~i 315 (343)
. .+... +.|. .-..+.+-..++ +++.||.+|.|++++.- ....+.++. ..+|
T Consensus 416 ~~kl~~~----------q~kqy~~k~nFsc~aTT~sG-----------~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I 474 (644)
T KOG2395|consen 416 KNKLAVV----------QSKQYSTKNNFSCFATTESG-----------YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI 474 (644)
T ss_pred cceeeee----------eccccccccccceeeecCCc-----------eEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence 3 11111 1121 112233333222 79999999999999873 334455555 6789
Q ss_pred ceeeecCCCCCeeEEccCCceEE
Q 019258 316 NSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
.-++++. +|.+++|.++.--+.
T Consensus 475 ~hVdvta-dGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 475 KHVDVTA-DGKWILATCKTYLLL 496 (644)
T ss_pred eeEEeec-cCcEEEEecccEEEE
Confidence 9999998 789999999774433
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.88 Score=42.80 Aligned_cols=148 Identities=13% Similarity=0.099 Sum_probs=85.5
Q ss_pred CCeeEEEccCCCeEEEEc---CCCcEEEEEccCceeeeeeccCCccccCeEEEEec------CCEEEEEeCCCcEEEEEC
Q 019258 72 TRISSLSTSHQSLVAAST---LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT------GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 72 ~~v~~v~~~~~~~l~~~s---~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~s~s~dg~v~~wd~ 142 (343)
.+|..++|.+++.++... .+|.++.=|- ..+ +...-|.++.|. ...+++.-....|.+|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds-----~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS-----KVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc-----cEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 478899999776655432 1333222111 111 233467888887 236777788888999998
Q ss_pred CC-----CceE-EEEEcCCCccc--eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeE
Q 019258 143 IG-----GGEF-KRVYDGNGLVG--FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIH 212 (343)
Q Consensus 143 ~~-----~~~~-~~~~~~~~~~~--v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 212 (343)
.- ++.. .+..+-.+..+ -...-|+| ...|..-.....-.+++++. ....++. ++. + +.|+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~--d~srVkaDi~~----~----G~Ih 159 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC--DSSRVKADIKT----S----GLIH 159 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee--CCceEEEeccC----C----ceEE
Confidence 52 2211 12211111111 24567899 44443334444445677777 2333322 332 2 7799
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 213 SVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
|.+|.++|+.++++-++.=.-++||-.
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 999999998887777766678899853
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.7 Score=37.02 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=98.8
Q ss_pred cCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC-CCcEEEEEccccCCC
Q 019258 116 GPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF-GYGLQWWDLRRAGSG 191 (343)
Q Consensus 116 ~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~ 191 (343)
..+.++.|+ .+ .++.....+.|.-.+.. ++ +.+.+......-.-.+++..++.++.... ++.+.++++.. ..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~--~~ 97 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD--DT 97 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec--cc
Confidence 458999998 34 55566677888777865 43 44444333222588889888666666654 89999999854 12
Q ss_pred CC--ee---EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC--CceeeeeecCCCCcccccCCcccc
Q 019258 192 GP--VL---QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW--QQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 192 ~~--~~---~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
.. .. ++....... ....+-.++|+|.+..+++ +-+..-..+|.++. ........... ...........
T Consensus 98 ~~~~~~~~~~~~l~~~~~--~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d 172 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNK--GNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQ--DLDDDKLFVRD 172 (248)
T ss_dssp TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-H--HHH-HT--SS-
T ss_pred cccchhhceEEecccccC--CCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeecccc--ccccccceecc
Confidence 21 21 122111101 1144889999998777665 45555556666543 11111110000 00000223456
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc----------cccceeeecCCCCCeeEEccCC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP----------CAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~----------~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
+.+++++|.... .++-..+...|..++....+...+.-. ..-=.+++++ +|..-|++ +.
T Consensus 173 ~S~l~~~p~t~~---------lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-Ep 241 (248)
T PF06977_consen 173 LSGLSYDPRTGH---------LLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-EP 241 (248)
T ss_dssp --EEEEETTTTE---------EEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-TT
T ss_pred ccceEEcCCCCe---------EEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-CC
Confidence 789999998775 555555666777777655443333221 1234556666 33333333 45
Q ss_pred ceEEEE
Q 019258 335 ESIAIV 340 (343)
Q Consensus 335 ~~i~~~ 340 (343)
.-+|+|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.7 Score=37.00 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=89.2
Q ss_pred CCCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEe-CCCcEEEEECCCCc
Q 019258 71 PTRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVG-EDGRVNLVSVIGGG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s-~dg~v~~wd~~~~~ 146 (343)
...++++.|. +.+ ++++....+.|..++.. ++.+...... -.+..-+|.+. +..++... .++.+.+.++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3469999999 444 56666667777666654 3334333332 23466778777 55565555 58899998884311
Q ss_pred ------eEEEE-Ec-C-CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcccCeEEE
Q 019258 147 ------EFKRV-YD-G-NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 147 ------~~~~~-~~-~-~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~v 214 (343)
..... +. . .....+-.++|.+ .+.|+.+-...-.+++.+........+.. ...... ......-+.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l 176 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGL 176 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccce
Confidence 11111 11 1 1223689999999 78888887777777777653000111111 111110 01111448899
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
+++|...++++-..++..+..+|..
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT
T ss_pred EEcCCCCeEEEEECCCCeEEEECCC
Confidence 9999988888888899999999943
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.029 Score=45.89 Aligned_cols=142 Identities=8% Similarity=-0.027 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
..|...+.+|.|+-++++.-. +.. +.+..|... .... +..++.|+.+|.|.+|................. .+
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k-~s~-rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-~i 104 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHK-ESC-RSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-SI 104 (238)
T ss_pred hhhccccCCcccccchhhhhh-hhh-hhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccc-cc
Confidence 446667788888888876211 000 001112211 1111 788999999999999988642222222222222 23
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--ecCCcEEEE
Q 019258 161 NCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--GSSGTVFAW 236 (343)
Q Consensus 161 ~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--~~dg~v~iw 236 (343)
.+.--.. ..+..+++.|+.|+.|.... .+.+-..-.|.. .++........+.. ++.. +.|..++.|
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p---~k~~g~~g~h~~------~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKP---NKVLGYVGQHNF------ESGEELIVVGSDEF-LKIADTSHDRVLKKW 174 (238)
T ss_pred eeccccccccceeEEeccCCceeeecccc---CceeeeeccccC------CCcceeEEecCCce-EEeeccccchhhhhc
Confidence 3322122 45788899999999999865 333322222221 22223333333332 3344 556666777
Q ss_pred EccC
Q 019258 237 DLRW 240 (343)
Q Consensus 237 d~~~ 240 (343)
++..
T Consensus 175 ~ve~ 178 (238)
T KOG2444|consen 175 NVEK 178 (238)
T ss_pred chhh
Confidence 6654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.2 Score=37.79 Aligned_cols=246 Identities=15% Similarity=0.123 Sum_probs=123.1
Q ss_pred EEecCCCCCCCCeEEEEe--ecCCC---CCCceeeeeCCCCCCCCCCccCCCCC--CeeEEEccCCCeEEEEcCCCcEEE
Q 019258 24 VRWLPPLSPLSKLAVLAI--YDTDA---DSPSLETHSISLPASLTPHSQWTPPT--RISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s--~D~~~---~~~~l~~w~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
+..+| +++.+.+++ +.+-. +.--|.+||..+ ..+..++..+. +...+. ....+.....+..+.+
T Consensus 41 ~~~sp----dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~EI~iP~k~R~~~~~--~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 41 VALSP----DGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGEIEIPPKPRAQVVP--YKNMFALSADGKFLYV 111 (342)
T ss_dssp EEE-T----TSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEEEEETTS-B--BS----GGGEEE-TTSSEEEE
T ss_pred eeECC----CCCEEEEEEEEEeccccccceeEEEEEecCc---CcccceEecCCcchheecc--cccceEEccCCcEEEE
Confidence 44555 777776654 21100 111368999844 22222222222 222211 1233444444455556
Q ss_pred EEccCceeeeeeccCC------ccccCeEEEEec-CCEEEEEeCCCcEEEEECCC-CceEEE---EEcCCCccce-EEEE
Q 019258 97 LSSAMQVLLSVDENSG------FHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG-GGEFKR---VYDGNGLVGF-NCVK 164 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~------~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~-~~~~~~---~~~~~~~~~v-~~~~ 164 (343)
|++.....+.+.-... .-...|..+--. ...|.+-|.||++.-..++. ++...+ .+..... ++ ..-.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d-p~f~~~~ 190 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD-PLFEHPA 190 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS--B-S--E
T ss_pred EccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc-ccccccc
Confidence 6655333333322110 011234444333 67899999999999998874 432221 2222222 22 2223
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecc---cCCCCCcccCeEEEEEcCCCCeEEEEEe-------cCC
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGN---FGSQGKASGMIHSVDIHPSRKHTCLAGG-------SSG 231 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~i~~v~~~p~~~~~~~sg~-------~dg 231 (343)
+.. ...++-.+..|.|+--|+.. ..+ ...+... +.+.+.+++-..-+++|+....+++--. .|+
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg---~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSG---DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETT---SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred eECCCCeEEEEecCCEEEEEeccC---CcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 333 55677789999999988876 221 1122211 1112344455666888876555544311 122
Q ss_pred --cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEecCC
Q 019258 232 --TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQGE 303 (343)
Q Consensus 232 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~~~ 303 (343)
.|-++|+.+.+....+. -+.++.+|+.+.+..- .|++.+ .++.|.++|...
T Consensus 268 gteVWv~D~~t~krv~Ri~------------l~~~~~Si~Vsqd~~P---------~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIP------------LEHPIDSIAVSQDDKP---------LLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEEE------------EEEEESEEEEESSSS----------EEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECCCCeEEEEEe------------CCCccceEEEccCCCc---------EEEEEcCCCCeEEEEeCcC
Confidence 26666887754433332 2457889999987664 676654 578999999753
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=51.60 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
...++.|++.|.+...|.+. . +..+ +.+.... ++|++++|+.+|. +++.|-.+|.|.+||+...
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~---n--L~~~--~~ne~v~--~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG---N--LGPL--HQNERVQ--GPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc---c--cchh--hcCCccC--CcceeeEecCCCc-eeccccCCCcEEEEEccCC
Confidence 45688899999999999877 2 2211 2221222 8899999999886 5678999999999999773
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.076 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCC
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSIS 57 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~ 57 (343)
++..-....+|..++|+| ..+++|.|+.|++ |.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P----~mdLiA~~t~~g~-----v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCP----TMDLIALGTEDGE-----VLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECC----CCCEEEEEECCCe-----EEEEECC
Confidence 344445567799999999 7899999999875 6688873
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.24 Score=46.58 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+..|.-+.|+ .-+++|.+..+|.+.+++++-. .+-... .|..+++ +++|. |+.++.|-.||+|++.|.+.+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccc-eeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34567788888 7789999999999999998733 232222 2444555 99998 899999999999999999987
Q ss_pred ceEEEEEcCCCccceEEEEeCC
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
............ .|.++-|.+
T Consensus 95 ~~l~~~~~s~e~-~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVET-DISKGIWDR 115 (665)
T ss_pred Cceecccccccc-chheeeccc
Confidence 534332111222 577777754
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.2 Score=39.57 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=111.3
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeecc-CCccccCeEEEEecCCEE
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDEN-SGFHVGPISGVDLTGSEC 128 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~ 128 (343)
.|+|++..+..-. ...+.| +++-.+.|++..-|+.-..+|++++|++... .+..... ...-...|..+.+..+-+
T Consensus 65 ~I~If~~sG~lL~--~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNISGQLLG--RILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEeccccchH--HHHhcC-CCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 3778888653221 112333 4888999997778888899999999998621 1111000 001112344443332223
Q ss_pred EEEeCCCcEEEE-ECCCCceEEEEEcCCCc-cceEEEEeCCC----CEEEEEeCCCcEEEEEccccCCCCCeeEEecccC
Q 019258 129 VSVGEDGRVNLV-SVIGGGEFKRVYDGNGL-VGFNCVKWASP----TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG 202 (343)
Q Consensus 129 ~s~s~dg~v~~w-d~~~~~~~~~~~~~~~~-~~v~~~~~~~~----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (343)
+.-..+|.+.+- +.+.. ...+..+-+.. ....|-...++ ..++-...--...++.... .......+....
T Consensus 141 avlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~--~~~q~~~~~~~~- 216 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE--SRVQLHALSWPN- 216 (829)
T ss_pred EEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec--ccccccccCCCC-
Confidence 333334444432 22221 11222110111 01122221221 1111111001111222222 011111121111
Q ss_pred CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 203 SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 203 ~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
..+..+..+|+.+++ +-=.++|.|.+-+....+....+.. ..| ..-.+++|+....
T Consensus 217 ------~~~~ki~VS~n~~~l-aLyt~~G~i~~vs~D~~~~lce~~~---------~~~-~~p~qm~Wcgnda------- 272 (829)
T KOG2280|consen 217 ------SSVVKISVSPNRRFL-ALYTETGKIWVVSIDLSQILCEFNC---------TDH-DPPKQMAWCGNDA------- 272 (829)
T ss_pred ------ceEEEEEEcCCcceE-EEEecCCcEEEEecchhhhhhccCC---------CCC-CchHhceeecCCc-------
Confidence 457888999988765 4557889888887654333222220 112 2223788885432
Q ss_pred CccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEcc
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
++++.+..|.+.........++.+..++-+..+++ -.+++.+
T Consensus 273 -----Vvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~DG---VRI~t~t 314 (829)
T KOG2280|consen 273 -----VVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVDG---VRIITST 314 (829)
T ss_pred -----eEEEEeeeEEEEcCCCCccccccCCCceeeeccCe---eEEeccc
Confidence 56666666766666555545555444444444333 4555444
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=5 Score=38.49 Aligned_cols=193 Identities=7% Similarity=-0.025 Sum_probs=84.9
Q ss_pred CCeEEEEeecCCCC-CCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeeee
Q 019258 34 SKLAVLAIYDTDAD-SPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLSV 107 (343)
Q Consensus 34 ~~~l~t~s~D~~~~-~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~~ 107 (343)
+..++.|+.+.... ...++.++..... +..+..++.+-.-.++...++.+++.|+.++ .+..||.....-...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 45677777654321 1135566664432 2222233322111222222667777777652 456676653322111
Q ss_pred eccCCccccCeEEEEecCCEEEEEeCC------CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC----
Q 019258 108 DENSGFHVGPISGVDLTGSECVSVGED------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG---- 177 (343)
Q Consensus 108 ~~~~~~h~~~v~~~~~~~~~~~s~s~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d---- 177 (343)
....... .........+..++.||.+ ..+..||..+.+ -...........-.++....+..++.||.+
T Consensus 374 ~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 1111011 1112222336666777632 357788887653 222111111001112222335556666643
Q ss_pred ----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccC
Q 019258 178 ----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRW 240 (343)
Q Consensus 178 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~ 240 (343)
..+..||... .....+......+ .....+.+ +..+++.|+.+ ..|..||..+
T Consensus 452 ~~~~~~v~~yd~~~----~~W~~~~~~~~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 452 IKVYNIVESYNPVT----NKWTELSSLNFPR----INASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CcccceEEEecCCC----CceeeCCCCCccc----ccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2378888866 2222222111001 11112222 23567777754 4677888765
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.17 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.5
Q ss_pred cCeEEEEEcCCCC--eEEEEEecCCcEEEEEccC
Q 019258 209 GMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 209 ~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~ 240 (343)
+.+.++.|+|... .+++-.-.-|.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998654 6788878889999999995
|
It contains a characteristic DLL sequence motif. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.29 E-value=4.5 Score=37.51 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=53.6
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEE--EccccCCCCCeeEEecccCCCCCcccC
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWW--DLRRAGSGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (343)
..+.++|+.+++... +..... .-..-+|+| ...+++...|+...|| |+.. +....+.... +.
T Consensus 218 ~~i~~~~l~~g~~~~-i~~~~g--~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~----~~~~~Lt~~~-------gi 283 (425)
T COG0823 218 PRIYYLDLNTGKRPV-ILNFNG--NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG----KNLPRLTNGF-------GI 283 (425)
T ss_pred ceEEEEeccCCccce-eeccCC--ccCCccCCCCCCEEEEEECCCCCccEEEEcCCC----CcceecccCC-------cc
Confidence 458899998874332 222222 234557778 4455555567765555 6655 2233333222 22
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEE--EEEccC
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVF--AWDLRW 240 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~--iwd~~~ 240 (343)
-..=.|+|+|..++.+.+..|.-. +.|...
T Consensus 284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 235578999999988888888744 445544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.2 Score=40.62 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=56.5
Q ss_pred CcEEEEECCCCceEEEEEcCC-CccceEEEEeCC----CCEEEEEeCCCcEEEEEccccCCC----CCeeEEeccc--CC
Q 019258 135 GRVNLVSVIGGGEFKRVYDGN-GLVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRRAGSG----GPVLQFKGNF--GS 203 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~----~~~~~~~~~~--~~ 203 (343)
.++.+||+.+.+ ..+.+.-. +......+.|.. ..-|+.+....+|-.|--.. .+ +.+.++.... +.
T Consensus 222 ~~l~vWD~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEEEEEEEE--EE--SS
T ss_pred CeEEEEECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeeeeEEEECCCcccCcc
Confidence 679999999985 55555433 332355666643 23366666666666664422 11 1222222110 00
Q ss_pred C--------CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 204 Q--------GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 204 ~--------~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
. +.-+.-|+.|..+.+.+++.++.--.|.|+.||+..+..|...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0 0001458999999999999999999999999999887776554
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=3.6 Score=35.51 Aligned_cols=178 Identities=17% Similarity=0.055 Sum_probs=104.4
Q ss_pred eeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEE
Q 019258 52 ETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSV 131 (343)
Q Consensus 52 ~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 131 (343)
.+|+.+......++.....++-+.++.++ +++...+..+.-++|+|+.............. .+--.++..+|++...+
T Consensus 67 ditn~~~~t~~~l~~~i~~~~l~~Dv~vs-e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVa 144 (370)
T COG5276 67 DITNVSLQTHDVLLSVINARDLFADVRVS-EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVA 144 (370)
T ss_pred cccCcccccCcceEEEEehhhhhheeEec-ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEe
Confidence 35555433334445555666778888888 55566666666799999985544433332211 13446677778888888
Q ss_pred eCCCcEEEEECCCCce--EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 132 GEDGRVNLVSVIGGGE--FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
..|.-+.+.|+.+... +...+..... ....++.+ +++-..+..|+-+.+-|+.. +..|...-.-.+ . .
T Consensus 145 dlddgfLivdvsdpssP~lagrya~~~~-d~~~v~IS-Gn~AYvA~~d~GL~ivDVSn--p~sPvli~~~n~--g----~ 214 (370)
T COG5276 145 DLDDGFLIVDVSDPSSPQLAGRYALPGG-DTHDVAIS-GNYAYVAWRDGGLTIVDVSN--PHSPVLIGSYNT--G----P 214 (370)
T ss_pred eccCcEEEEECCCCCCceeeeeeccCCC-CceeEEEe-cCeEEEEEeCCCeEEEEccC--CCCCeEEEEEec--C----C
Confidence 8666688889877432 2333333322 23445444 45566667899999999988 555543322222 1 3
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
.+.++..+++.. + ++-. +.-+.+-|...+..|
T Consensus 215 g~~sv~vsdnr~-y-~vvy-~egvlivd~s~~ssp 246 (370)
T COG5276 215 GTYSVSVSDNRA-Y-LVVY-DEGVLIVDVSGPSSP 246 (370)
T ss_pred ceEEEEecCCee-E-EEEc-ccceEEEecCCCCCc
Confidence 588888887643 2 3322 334666666554433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.26 Score=40.49 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
....++.|+.+|.|.+|..+..... ......-...|.++-.. +....+++.||.++.|.+.-.+ .......|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH--SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchH--HHhhhcccccceeccccccccceeEEeccCCceeeeccccCc-eeeeeccccC
Confidence 4577999999999999988721111 00000112234444344 4477788999999999997764 3433333431
Q ss_pred cceEEEEeCC-CCEEEEE--eCCCcEEEEEccc
Q 019258 158 VGFNCVKWAS-PTEFVTG--GFGYGLQWWDLRR 187 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~--~~d~~i~iwd~~~ 187 (343)
..+..+.... ...+..+ +.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1222222222 3334444 5566666666544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.47 Score=47.51 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=67.9
Q ss_pred eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 118 ISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 118 v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
+.+.+.-+..++.|+..|.+...|..+.-.+.. ...+...+|++++|+. +..++.|-.+|.|.+||... +++++.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~-~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~---~k~l~~ 167 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLH-QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR---AKILKV 167 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhh-cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC---Ccceee
Confidence 344443367788899999999988876422211 1223334799999999 66666666699999999988 566665
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
+.-+.. .+ ..+--+.+..++. .++++..-|. +|.+
T Consensus 168 i~e~~a-p~---t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGA-PV---TGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCC-cc---ceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 554331 11 2233344444333 5667666665 4544
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.8 Score=35.38 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=107.7
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEE
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVS 130 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 130 (343)
|++.|++.++.+.++..+...+--.++..+ ++...++..|.-+.+.|+.+.+...+........+.-..+..+|++-..
T Consensus 108 L~IvDIS~P~sP~~~~~lnt~gyaygv~vs-Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYv 186 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNTDGYAYGVYVS-GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYV 186 (370)
T ss_pred eEEEeccCCCCcceeccccCCceEEEEEec-CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEE
Confidence 889999887777767666665555555555 7888887766667788998554443332222233445677888999999
Q ss_pred EeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 131 VGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
+..|+-+++-|+.+...+. ..+.... .+..+..+++.-++ .-.+-.+.+-|... ...+..+-..+. +..
T Consensus 187 A~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~sv~vsdnr~y~-vvy~egvlivd~s~---~ssp~~~gsyet-~~p-- 257 (370)
T COG5276 187 AWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYSVSVSDNRAYL-VVYDEGVLIVDVSG---PSSPTVFGSYET-SNP-- 257 (370)
T ss_pred EEeCCCeEEEEccCCCCCeEEEEEecCC--ceEEEEecCCeeEE-EEcccceEEEecCC---CCCceEeecccc-CCc--
Confidence 9999999999998754332 2222222 47777766644344 44556667777765 232222222211 111
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..+..+...- .. ....-.+.-+.+-|+.++..|.-
T Consensus 258 ~~~s~v~Vs~--~~-~Yvadga~gl~~idisnp~spfl 292 (370)
T COG5276 258 VSISTVPVSG--EY-AYVADGAKGLPIIDISNPPSPFL 292 (370)
T ss_pred ccccceeccc--ce-eeeeccccCceeEeccCCCCCch
Confidence 2233334432 22 22334555667778777655443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=4.3 Score=35.05 Aligned_cols=209 Identities=14% Similarity=0.139 Sum_probs=108.7
Q ss_pred ccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC-CCcEEEEEccccCCC
Q 019258 115 VGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF-GYGLQWWDLRRAGSG 191 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~-d~~i~iwd~~~~~~~ 191 (343)
...+.++.|+ .+.+++......-.++=..++. +.+.+.-..-...-.++|..++.++.+.. ++++.++.+.. .
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~---~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA---D 160 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC---C
Confidence 3458999999 6777777777777776555564 44443322211355677777666666655 88888887765 2
Q ss_pred CCeeE-----EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee--ecCCCCcccccCCcccc
Q 019258 192 GPVLQ-----FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL--SGVGTGEAVTHSLSESE 264 (343)
Q Consensus 192 ~~~~~-----~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~h~~~ 264 (343)
..+.. +..-.. .+ .+.-.-.++|+|.+..+++ +=+-.=+.||-.......... ....... ....-..
T Consensus 161 t~~~~~~~~~i~L~~~-~k-~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~---~~~f~~D 234 (316)
T COG3204 161 TTVISAKVQKIPLGTT-NK-KNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTAD---RDLFVLD 234 (316)
T ss_pred ccEEeccceEEecccc-CC-CCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccc---cceEeec
Confidence 22111 111110 00 1244778999998766654 344344555544332211111 1000000 0112345
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
|.++.|++.... .++-.-+++.|.-.+...++.+.+.-....+.+..+-.. --=|+-.+++.|||..-|
T Consensus 235 vSgl~~~~~~~~---------LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipq-aEGiamDd~g~lYIvSEP 303 (316)
T COG3204 235 VSGLEFNAITNS---------LLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQ-AEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cccceecCCCCc---------EEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCC-cceeEECCCCCEEEEecC
Confidence 788999987774 555555666666666665555555443222222222100 122334455667766543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.7 Score=37.10 Aligned_cols=111 Identities=7% Similarity=-0.060 Sum_probs=52.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC--CcEEEEEccCceeeeeecc
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS--GSLHVLSSAMQVLLSVDEN 110 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d--g~v~v~~~~~~~~~~~~~~ 110 (343)
++.+++.|+.++......++.++...+. +..+..++.+-.-.++...++.+.+.|+.+ ..+..|+...+.-......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 4566788887643222234556654322 222333332221122222366777777754 3567777653322222221
Q ss_pred CCccccCeEEEEecCCEEEEEeCCC---cEEEEECCCC
Q 019258 111 SGFHVGPISGVDLTGSECVSVGEDG---RVNLVSVIGG 145 (343)
Q Consensus 111 ~~~h~~~v~~~~~~~~~~~s~s~dg---~v~~wd~~~~ 145 (343)
. ............+...+.||.++ .+..||.+++
T Consensus 350 ~-~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 350 L-KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred C-CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 1 11111122333377777777654 4667887765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.28 E-value=7.6 Score=36.81 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCc---cccCe--EEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGF---HVGPI--SGVDLTG-SECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~---h~~~v--~~~~~~~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
++.++.++.++.+..+|..+++.+-....... ....+ ..+...+ ..++.++.+|.|.-+|.++++..-+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 56777888889999999875543311111000 00111 1122334 788888999999999999986444332211
Q ss_pred CccceEEEEeCC---CCEEEEEe---------CCCcEEEEEccccCCCCCeeEEecccCCCCCc------------c-cC
Q 019258 156 GLVGFNCVKWAS---PTEFVTGG---------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA------------S-GM 210 (343)
Q Consensus 156 ~~~~v~~~~~~~---~~~l~t~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~-~~ 210 (343)
....-..+.-.| ...++.++ .++.+..+|..+ ++.+.++.......... . ..
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET---GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC---CceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 100001122222 34555554 367888889888 77766654321100000 0 00
Q ss_pred e-EEEEEcCCCCeEEEEEecCC------------------cEEEEEccCCceeeeee
Q 019258 211 I-HSVDIHPSRKHTCLAGGSSG------------------TVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 211 i-~~v~~~p~~~~~~~sg~~dg------------------~v~iwd~~~~~~~~~~~ 248 (343)
+ .+.++++.+. +++.++.++ .|.-+|+++++....+.
T Consensus 218 vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 218 SWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred ccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1 1234444443 445666665 79999999888777664
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.24 E-value=10 Score=38.20 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=47.3
Q ss_pred cccceeeEEecCC--CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC---CCeeEEEcc-CCCeEEEEcC
Q 019258 17 QSKYIDAVRWLPP--LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP---TRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 17 ~~~~i~~v~w~p~--~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~---~~v~~v~~~-~~~~l~~~s~ 90 (343)
....|.|+..+|. .+...++++.|.|+.. ...+--+++. ...+...+.-+ -.|.-..|- +..+|+++..
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~----~~~l~~~pd~-~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalg 603 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDI----SMILTFLPDL-ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALG 603 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecce----EEEEEECCCc-ceeeeeccCCCccchheeeEEeeccceEEEEEcC
Confidence 4467999999995 2223468999999865 2334444331 11112222222 223333333 5788999999
Q ss_pred CCcEEEEEcc
Q 019258 91 SGSLHVLSSA 100 (343)
Q Consensus 91 dg~v~v~~~~ 100 (343)
||.+.-|.+.
T Consensus 604 dG~l~~fv~d 613 (1096)
T KOG1897|consen 604 DGALLYFVLD 613 (1096)
T ss_pred CceEEEEEEE
Confidence 9999877664
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.16 E-value=4.9 Score=34.31 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=103.0
Q ss_pred cccCCccc--ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCe--eEEEccCCCeEEE
Q 019258 12 VHRFPQSK--YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRI--SSLSTSHQSLVAA 87 (343)
Q Consensus 12 ~~~~~~~~--~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~l~~ 87 (343)
+.++||+. ..-.+.+.+ ++.++-+.+.- ++.+|+.+++.... .......+... -.+...++.+...
T Consensus 36 v~~ypHd~~aFTQGL~~~~----~g~LyESTG~y---G~S~l~~~d~~tg~---~~~~~~l~~~~FgEGit~~~d~l~qL 105 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLD----DGTLYESTGLY---GQSSLRKVDLETGK---VLQSVPLPPRYFGEGITILGDKLYQL 105 (264)
T ss_dssp EEEEE--TT-EEEEEEEEE----TTEEEEEECST---TEEEEEEEETTTSS---EEEEEE-TTT--EEEEEEETTEEEEE
T ss_pred EEECCCCCcccCccEEecC----CCEEEEeCCCC---CcEEEEEEECCCCc---EEEEEECCccccceeEEEECCEEEEE
Confidence 44445443 234445544 56666655443 34568888885532 22222222222 2344445556666
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~~ 164 (343)
.-.++...+||..+.+.+..... .+.=..++..++.++.......+..+|..+.+....+...... ..+.-+.
T Consensus 106 TWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp ESSSSEEEEEETTTTEEEEEEE-----SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EecCCeEEEEccccceEEEEEec----CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 66789999999986655544432 2455777777777777777778999998775433333221111 1355566
Q ss_pred eCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecc--------cCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 165 WASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN--------FGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 165 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
|..+...+-.=....|..-|..+ ++....+... ...+.....-.+.|+++|....++++|
T Consensus 182 ~i~G~IyANVW~td~I~~Idp~t---G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 YINGKIYANVWQTDRIVRIDPET---GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTEEEEEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEcCEEEEEeCCCCeEEEEeCCC---CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 65544334333455555666655 4433332110 000000125699999999988888886
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.12 E-value=4 Score=39.30 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=63.7
Q ss_pred CCcEEEEEcccc-CCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 177 GYGLQWWDLRRA-GSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 177 d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
+++|.+.|.+.+ +.+..+..+.... ...+.++++|+|.++++++..+.+|.+.|+.+....+.-. +...+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~~~ 366 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPRDA 366 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCccce
Confidence 456778887651 0012222222111 4578899999999999999999999999998744211000 000000
Q ss_pred cccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 256 VTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 256 ~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
++-+. -...-...+|.+++. ...|...|..|--|+...
T Consensus 367 vvaevevGlGPLHTaFDg~G~----------aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPELGLGPLHTAFDGRGN----------AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeeccCCCcceEEECCCCC----------EEEeEeecceeEEEehHH
Confidence 00000 011224677888765 577888899999998543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.94 E-value=5.7 Score=36.82 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=74.7
Q ss_pred ceEEEEeCC-CCEEEEEeC---C-CcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 159 GFNCVKWAS-PTEFVTGGF---G-YGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~---d-~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.+..-+|++ ...++.... . ..+.++|+.. ++. +.++. +.-..-+|+|+|+.++++...||
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~---g~~~~i~~~~----------g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT---GKRPVILNFN----------GNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccC---CccceeeccC----------CccCCccCCCCCCEEEEEECCCC
Confidence 466667777 444333322 2 4588899987 332 22333 33446689999999999988888
Q ss_pred c--EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe--EEEEecCCCccc
Q 019258 232 T--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--LAVVEQGEEPFE 307 (343)
Q Consensus 232 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--i~~~~~~~~~~~ 307 (343)
. |++.|+.....+. +. .-.+.-..=.|+|++.. .+++.+..|. |++.+.......
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt-----------~~~gi~~~Ps~spdG~~---------ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LT-----------NGFGINTSPSWSPDGSK---------IVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccEEEEcCCCCccee-cc-----------cCCccccCccCCCCCCE---------EEEEeCCCCCcceEEECCCCCcee
Confidence 7 5666777655333 21 01111225568899884 3344444555 444444332222
Q ss_pred ccccc-cccceeeecCCCCCeeEEc
Q 019258 308 LLAEP-CAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 308 ~~~~~-~~i~s~~~~~~~~~~l~~~ 331 (343)
.+... ..-..-.++|+....++++
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEe
Confidence 23222 1111445667443444444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.2 Score=41.10 Aligned_cols=152 Identities=4% Similarity=-0.104 Sum_probs=74.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC--------------------
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-------------------- 92 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-------------------- 92 (343)
++...+.|+.++.....+++.|+...+. +..+..++.+-.-.++.-.++.+++.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 4567777877654322346778775432 3333333332221222222577777777543
Q ss_pred ---cEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCC------cEEEEECCC-CceEEEEEcCCCccceEE
Q 019258 93 ---SLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDG------RVNLVSVIG-GGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 93 ---~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg------~v~~wd~~~-~~~~~~~~~~~~~~~v~~ 162 (343)
.+..||...++-..+....... .....+...+...+.||.++ .+..||.++ .+ -.....-.......+
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccce
Confidence 3666776544322222211111 11122333367777777542 356788876 42 221111111101223
Q ss_pred EEeCCCCEEEEEeCCC--cEEEEEccc
Q 019258 163 VKWASPTEFVTGGFGY--GLQWWDLRR 187 (343)
Q Consensus 163 ~~~~~~~~l~t~~~d~--~i~iwd~~~ 187 (343)
+....+...+.||.++ .+..||..+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCccc
Confidence 3333467888888888 667777765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.68 E-value=9.3 Score=36.22 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=85.4
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccc---cCe-EEEEecCCEEEEEe---------CCCcEEEEECCCCceEE
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHV---GPI-SGVDLTGSECVSVG---------EDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~---~~v-~~~~~~~~~~~s~s---------~dg~v~~wd~~~~~~~~ 149 (343)
+.++.++.+|.|..+|..+++.+-..... .+. ..+ .+..+.+..++.++ .+|.+...|..+++..-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 78888999999999998866544222111 110 001 11112244444443 46788999998886443
Q ss_pred EEEcCCCc------------------cce-EEEEeCC-CCEEEEEeCCC------------------cEEEEEccccCCC
Q 019258 150 RVYDGNGL------------------VGF-NCVKWAS-PTEFVTGGFGY------------------GLQWWDLRRAGSG 191 (343)
Q Consensus 150 ~~~~~~~~------------------~~v-~~~~~~~-~~~l~t~~~d~------------------~i~iwd~~~~~~~ 191 (343)
+....... ..+ ....+.+ ...++.++.++ .|.-.|..+ +
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t---G 266 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT---G 266 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC---C
Confidence 33211110 001 1123333 45677776554 688888888 7
Q ss_pred CCeeEEecccCCC---CCccc-CeEEEE-EcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 192 GPVLQFKGNFGSQ---GKASG-MIHSVD-IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 192 ~~~~~~~~~~~~~---~~~~~-~i~~v~-~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+...++....... ..... .+..+. .+-....+++.++.+|.+...|.++++.....
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 7766654221000 00000 111111 11111235678889999999999998766554
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.32 E-value=6.3 Score=38.22 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=62.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEcc-----ccCC-CCCe
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLR-----RAGS-GGPV 194 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~-----~~~~-~~~~ 194 (343)
++..+.-+....+.+||.+.+.. ....+...+ .|.++.|.. ++.+++.|..+.|.++--. .+.+ -.++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~--~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDD--PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCC--ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 33333334455789999988631 112222233 699999976 7789999999999998542 1011 1233
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.++.-... .+.+|....|.++|..+ +|+ +..+.++|-
T Consensus 119 ~~i~i~~~----T~h~Igds~Wl~~G~Lv--V~s-GNqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSH----TPHPIGDSIWLKDGTLV--VGS-GNQLFVFDK 155 (631)
T ss_pred EEEEeecC----CCCCccceeEecCCeEE--EEe-CCEEEEECC
Confidence 33322111 11568999999987533 333 346888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.22 E-value=11 Score=36.07 Aligned_cols=113 Identities=16% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCC-ccccCe-------EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSG-FHVGPI-------SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~-~h~~~v-------~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
++.+++++.++.|.-+|..+++.+=...... ....+. ..+.+.+..++.++.|+.|.-.|.++++.+-+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 5678888888888888887655442211100 000010 12334466788888999999999999865443321
Q ss_pred CCCccceEEEEeCC---CCEEEEEeC------CCcEEEEEccccCCCCCeeEEe
Q 019258 154 GNGLVGFNCVKWAS---PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 154 ~~~~~~v~~~~~~~---~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.... .-..+.-.| .+.++.+.. ++.|.-+|.++ ++.+.++.
T Consensus 149 ~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T---G~~lW~~~ 198 (527)
T TIGR03075 149 GDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT---GKLVWRRY 198 (527)
T ss_pred cccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC---CceeEecc
Confidence 1110 011122223 455666543 68899999988 77666544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=8.3 Score=32.75 Aligned_cols=106 Identities=15% Similarity=0.038 Sum_probs=65.3
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceE
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN 161 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 161 (343)
.+++.|+-.+.+..-|...+... |+..-...+.+-..- ++.++.|+..|.+.+.+.+++.+...... -+...+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~----We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI----WEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE----eehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccc
Confidence 55666666666666565533311 111111233333333 88899999999999999999854444332 2221343
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE
Q 019258 162 CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
... .+ ...+-.++.|++....|.++ ...+.+.
T Consensus 99 a~~-d~~~glIycgshd~~~yalD~~~---~~cVyks 131 (354)
T KOG4649|consen 99 AQC-DFDGGLIYCGSHDGNFYALDPKT---YGCVYKS 131 (354)
T ss_pred eEE-cCCCceEEEecCCCcEEEecccc---cceEEec
Confidence 333 34 77888899999999999988 5666553
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=9.4 Score=33.03 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEE-eCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSV-GEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~-s~dg~v~~wd~~~~ 145 (343)
+....++++.|+ +.+.|++....+.-.|+=..+++.+........| .--.+.+. ++.++.+ =.++.+.+..+...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445569999999 7777888777776655543355555444433222 23455665 5555444 36777777766443
Q ss_pred ceEE-------EEEc-CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCe--eEEecccCCCCCcccCeEEE
Q 019258 146 GEFK-------RVYD-GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPV--LQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 146 ~~~~-------~~~~-~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v 214 (343)
.... .+-. .+...+.-.++|.+ ...|..+-..+=+.||.... ....+ .....+...++.--..+.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~--~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ--SPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec--CCcccccccccCcccccceEeeccccc
Confidence 2111 1111 12234789999999 78888888888888888765 11111 11111111111111448889
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 215 DIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
.|++...++++-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 99987778888888999988888764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.33 E-value=13 Score=33.43 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=107.2
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC--cEEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG--SLHVL 97 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg--~v~v~ 97 (343)
-..+.|+| +++.||....|.. .++.+.+..-.... ..-..+..+.+- .+. .+. .+.|+
T Consensus 103 ~~~~~WSp----d~~~la~~~~d~~----~v~~~~~~~~~~~~-----~~yp~~~~~~YPk~G~------~np~v~l~v~ 163 (353)
T PF00930_consen 103 RSAVWWSP----DSKYLAFLRFDER----EVPEYPLPDYSPPD-----SQYPEVESIRYPKAGD------PNPRVSLFVV 163 (353)
T ss_dssp SBSEEE-T----TSSEEEEEEEE-T----TS-EEEEEEESSST-----ESS-EEEEEE--BTTS---------EEEEEEE
T ss_pred ccceEECC----CCCEEEEEEECCc----CCceEEeeccCCcc-----ccCCcccccccCCCCC------cCCceEEEEE
Confidence 46899999 8999999988854 13344331100000 011245566655 221 112 35566
Q ss_pred EccCceee--eeeccCCccccCeEEEEec--CCEEEEE--eCCC---cEEEEECCCCceEEEEEcCCCc--cceEEEEeC
Q 019258 98 SSAMQVLL--SVDENSGFHVGPISGVDLT--GSECVSV--GEDG---RVNLVSVIGGGEFKRVYDGNGL--VGFNCVKWA 166 (343)
Q Consensus 98 ~~~~~~~~--~~~~~~~~h~~~v~~~~~~--~~~~~s~--s~dg---~v~~wd~~~~~~~~~~~~~~~~--~~v~~~~~~ 166 (343)
++..++.. ........-..-+..+.|. +..++.. .++. .+.+.|..++..-....+.... .......+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 164 DLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL 243 (353)
T ss_dssp ESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-
T ss_pred ECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc
Confidence 77644322 2221001123467888887 4424433 3333 3556677665321111111111 012344444
Q ss_pred -C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE-EEEcCCCCeEEEEEecCC----cEEEEEc
Q 019258 167 -S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS-VDIHPSRKHTCLAGGSSG----TVFAWDL 238 (343)
Q Consensus 167 -~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~~p~~~~~~~sg~~dg----~v~iwd~ 238 (343)
+ ...+.....+|.-+|+-+.. .+..+..+.... -.|.. +.+++++..++.++..++ .++.-++
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~--~~~~~~~lT~G~-------~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDL--DGGKPRQLTSGD-------WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEET--TSSEEEESS-SS-------S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcc--cccceeccccCc-------eeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 4 34444445678777776655 233344443221 33644 678888888887877633 5666666
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
..+..+..+.. ..+.-..+.|+|++.. .+.+|+.-
T Consensus 315 ~~~~~~~~LT~-----------~~~~~~~~~~Spdg~y---------~v~~~s~~ 349 (353)
T PF00930_consen 315 DSGGEPKCLTC-----------EDGDHYSASFSPDGKY---------YVDTYSGP 349 (353)
T ss_dssp TETTEEEESST-----------TSSTTEEEEE-TTSSE---------EEEEEESS
T ss_pred CCCCCeEeccC-----------CCCCceEEEECCCCCE---------EEEEEcCC
Confidence 62244444431 1111168999999886 66677654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.17 E-value=13 Score=33.00 Aligned_cols=112 Identities=10% Similarity=-0.061 Sum_probs=51.0
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCCCC---CCCCccCCCCCCeeEEEccCCCeEEEEcC-----CCcEEEEEccCceee
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLPAS---LTPHSQWTPPTRISSLSTSHQSLVAASTL-----SGSLHVLSSAMQVLL 105 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~~v~~v~~~~~~~l~~~s~-----dg~v~v~~~~~~~~~ 105 (343)
+.+++.|+.+.......++.+++..... ...+..++.+-.-.++...++.+++.|+. ...+..||....+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566666665432222455566544321 12233333322212233335666666664 235677777644322
Q ss_pred eeeccCCccccCeEEEEecCCEEEEEeCCCc----EEEEECCCC
Q 019258 106 SVDENSGFHVGPISGVDLTGSECVSVGEDGR----VNLVSVIGG 145 (343)
Q Consensus 106 ~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~----v~~wd~~~~ 145 (343)
.+......-......+...++.++.|+.++. +..||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2211110001111222334777777876643 457888765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.93 E-value=13 Score=32.61 Aligned_cols=226 Identities=13% Similarity=0.016 Sum_probs=108.6
Q ss_pred CeEEEEcCCC-cEEEEEccCceeeeeec-cCCccccCeEEEEecCCEEEEEe-----CCCcEEEEECCCCceEEEEEcCC
Q 019258 83 SLVAASTLSG-SLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLTGSECVSVG-----EDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 83 ~~l~~~s~dg-~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~s~s-----~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
..++.+-.-| ...+||....+...... ...-|...--.++-.|+.|++.= ..|.|-+||...+-.-...+..+
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 3344444433 33567776554443322 12223332233333377777763 45889999998432233333334
Q ss_pred CccceEEEEeCC-CCEEEEEe------------------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 156 GLVGFNCVKWAS-PTEFVTGG------------------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~~l~t~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.- .-..+.+.| +..|+.+- .+-.+.+-|.++ ++.+.+..... ..+.-.|.-+++
T Consensus 98 GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s---G~ll~q~~Lp~---~~~~lSiRHLa~ 170 (305)
T PF07433_consen 98 GI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS---GALLEQVELPP---DLHQLSIRHLAV 170 (305)
T ss_pred Cc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC---CceeeeeecCc---cccccceeeEEe
Confidence 33 566677777 43555442 122233344444 44444432211 111145888888
Q ss_pred cCCCCeEEEEEec-CCc-------EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 217 HPSRKHTCLAGGS-SGT-------VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 217 ~p~~~~~~~sg~~-dg~-------v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
.++|. ++.|.+ .|. |.+++... . .......... ...-.+.+=+|++++++.. ..+
T Consensus 171 ~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~---------ia~ 233 (305)
T PF07433_consen 171 DGDGT--VAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAPEEQ---WRRLNGYIGSIAADRDGRL---------IAV 233 (305)
T ss_pred cCCCc--EEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCChHH---HHhhCCceEEEEEeCCCCE---------EEE
Confidence 88764 333332 111 22332221 1 1111000000 0123467889999998874 456
Q ss_pred EEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC
Q 019258 289 FCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 289 s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
|+-.-|.+.+|+.......-...-..+..++..+ + .++++++..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~-~-~f~~ssG~G 277 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTD-D-GFLVSSGQG 277 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCceeeeeecC-C-ceEEeCCCc
Confidence 6666778999987544322122212233444443 2 466666643
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.65 E-value=12 Score=31.98 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=98.5
Q ss_pred CccCCCCCC--eeEEEcc-CCCeEEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEE
Q 019258 65 HSQWTPPTR--ISSLSTS-HQSLVAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVN 138 (343)
Q Consensus 65 ~~~~~~~~~--v~~v~~~-~~~~l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~ 138 (343)
+..++|... -..+.|. ++.++-+.+.-| .|+.+++.+++............+ -.+... +..+.-.-.++...
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg--EGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG--EGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E--EEEEEETTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc--eeEEEECCEEEEEEecCCeEE
Confidence 444555433 4577884 666666666666 777788776554433332211222 334444 44555677889999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
+||..+-+... .+.-.. .=..++.. +..|+......+|.++|... .+...++....+.+.. ..++-+.+..
T Consensus 114 ~yd~~tl~~~~-~~~y~~--EGWGLt~d-g~~Li~SDGS~~L~~~dP~~---f~~~~~i~V~~~g~pv--~~LNELE~i~ 184 (264)
T PF05096_consen 114 VYDPNTLKKIG-TFPYPG--EGWGLTSD-GKRLIMSDGSSRLYFLDPET---FKEVRTIQVTDNGRPV--SNLNELEYIN 184 (264)
T ss_dssp EEETTTTEEEE-EEE-SS--S--EEEEC-SSCEEEE-SSSEEEEE-TTT----SEEEEEE-EETTEE-----EEEEEEET
T ss_pred EEccccceEEE-EEecCC--cceEEEcC-CCEEEEECCccceEEECCcc---cceEEEEEEEECCEEC--CCcEeEEEEc
Confidence 99999875443 333222 24555533 45566666688999999877 5555555544321211 3355565552
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeee--ecCCCC--cccccCCccccEEEEEEeecCCC
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVL--SGVGTG--EAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~--~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
| .+.|=--..-.|...|..++...-.+ .++... .......-.+-.+.|+|+|....
T Consensus 185 -G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 185 -G-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp -T-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred -C-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 2 34444444445555555554321111 000000 00000112456899999998875
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.41 E-value=2.9 Score=42.57 Aligned_cols=123 Identities=9% Similarity=-0.049 Sum_probs=73.7
Q ss_pred cCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 209 GMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
-++..+...++.....+. .+.+-.|..||++.-...............+.........++.|+|.-+. ..
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~---------n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL---------NS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc---------hh
Confidence 456666666665433333 33344689999987433221110000000000112234578899998775 77
Q ss_pred EEEecCCeEEEEecCCCcccccc--cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGEEPFELLA--EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~~~~~~~--~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.+..|+.|++.........+.. -.....++.|+| .|..++.|-.+|.+.-|.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEee
Confidence 88999999988665433322222 235689999999 679999999889887664
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=16 Score=34.98 Aligned_cols=150 Identities=9% Similarity=0.022 Sum_probs=68.7
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC------CcEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS------GSLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d------g~v~v~~~~~~~~~~ 106 (343)
++.+++.|+.++....-.++.|+...+. +.....++.+..-.++...++..++.|+.+ ..+..||..+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 4566777777643222345677765432 333333333322222332356666776632 357788876433222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeCCC--------cEEEEECCCCceEEEEEc--CCCccceEEEEeCCCCEEEEEeC
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGEDG--------RVNLVSVIGGGEFKRVYD--GNGLVGFNCVKWASPTEFVTGGF 176 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~dg--------~v~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~t~~~ 176 (343)
......... ....+...+..++.||.+. .+..||..+++ -...-. .... ....+.+ .+..++.||.
T Consensus 421 ~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~ 496 (534)
T PHA03098 421 GSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRI-NASLCIF-NNKIYVVGGD 496 (534)
T ss_pred cCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccc-cceEEEE-CCEEEEEcCC
Confidence 211111111 1122333366666666432 37788887653 222111 0111 1112222 3455666665
Q ss_pred C-----CcEEEEEccc
Q 019258 177 G-----YGLQWWDLRR 187 (343)
Q Consensus 177 d-----~~i~iwd~~~ 187 (343)
+ +.+..||...
T Consensus 497 ~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 497 KYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcccceeEEEeCCC
Confidence 3 4677777755
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=89.25 E-value=17 Score=35.40 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=56.3
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee--cCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC--HTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++.+...++.|||.+......... -...+.|.++.|.. +++ .+++.+-...|.++-+.
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~----------f~~~~~I~dLDWtst~d~q----------siLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEES----------FSEDDPIRDLDWTSTPDGQ----------SILAVGFPHHVLLYTQL 104 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeee----------ecCCCceeeceeeecCCCC----------EEEEEEcCcEEEEEEcc
Confidence 333444569999998765333322 12368899999964 444 57888889988886542
Q ss_pred C------Cccccc--------ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 E------EPFELL--------AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~------~~~~~~--------~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. .+.+.. ..+.+|.+..|-+ +|..+|.++ + -++|+.+
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG-N-qlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG-N-QLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC-C-EEEEECC
Confidence 1 111110 1145788888887 444444443 3 4666654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.40 E-value=26 Score=34.06 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred CCCcEEEEECCC----CceEEEEEcCCCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccCCCCC------------e
Q 019258 133 EDGRVNLVSVIG----GGEFKRVYDGNGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAGSGGP------------V 194 (343)
Q Consensus 133 ~dg~v~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~------------~ 194 (343)
.++.|.+.|..+ +..+...+.-.. ....+.++| +.++ +++..+.++.+.|+.. .+. .
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k---~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRK---LDDLFDGKIKPRDAVV 368 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChh---hhhhhhccCCccceEE
Confidence 367899999987 323444443333 488899999 5554 4455599999999977 332 1
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
.+.+. +. +|. -.+|.++|. .+.+-.-|..|..||+..
T Consensus 369 aevev-----Gl--GPL-HTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-----GL--GPL-HTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-----CC--Ccc-eEEECCCCC-EEEeEeecceeEEEehHH
Confidence 12221 11 333 346788774 667788899999999865
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.7 Score=25.56 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.6
Q ss_pred ceEEEEeCC--C--CEEEEEeCCCcEEEEEccc
Q 019258 159 GFNCVKWAS--P--TEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 159 ~v~~~~~~~--~--~~l~t~~~d~~i~iwd~~~ 187 (343)
.+.+++|+| . .+|+-+-.-+.|.++|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 589999997 3 5788888899999999995
|
It contains a characteristic DLL sequence motif. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=88.14 E-value=16 Score=31.38 Aligned_cols=173 Identities=10% Similarity=0.067 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEE------
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQF------ 197 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~------ 197 (343)
++.++.|..+| +.+++........+..... .|..+...+ -+.++.- .|+++.++++.. -.+....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~---~I~ql~vl~~~~~llvL-sd~~l~~~~L~~---l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLS---SITQLSVLPELNLLLVL-SDGQLYVYDLDS---LEPVSTSAPLAFP 78 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecc---eEEEEEEecccCEEEEE-cCCccEEEEchh---hcccccccccccc
Confidence 77888998888 9999984432344443222 388888888 4444444 469999999976 2222210
Q ss_pred eccc-CCCCCcccCeEEEE--EcCCCCeEEEEEecCCcEEEEEccCCce----eeeeecCCCCcccccCCccccEEEEEE
Q 019258 198 KGNF-GSQGKASGMIHSVD--IHPSRKHTCLAGGSSGTVFAWDLRWQQQ----SIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 198 ~~~~-~~~~~~~~~i~~v~--~~p~~~~~~~sg~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
+... ...-.....+...+ -.+.+...++ .....+|.+|....... ..... .-...+..++|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~-----------~lp~~~~~i~~ 146 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEI-----------SLPDPPSSIAF 146 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEE-----------EcCCCcEEEEE
Confidence 0000 00000002244444 2233333433 44456898888765321 11211 13477889999
Q ss_pred eecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccc-------------cccccceeeecCCCCCeeEEcc
Q 019258 271 DCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLA-------------EPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~-------------~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
.+ . .++.+..++ ..+.+.. ....++.. ...++..+.+.. +.+|+|-.
T Consensus 147 ~~--~----------~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~Ll~~~ 207 (275)
T PF00780_consen 147 LG--N----------KICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD--NEFLLCYD 207 (275)
T ss_pred eC--C----------EEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC--ceEEEEec
Confidence 83 2 456665555 3444443 22233321 124566777764 37888753
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.11 E-value=13 Score=30.48 Aligned_cols=182 Identities=8% Similarity=0.012 Sum_probs=83.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeec
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASL--TPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~ 109 (343)
+++++.+.+.- +...|+.|++...... ..+.. .-+...++.+ .+......-.+|.-..||..+.+++-...
T Consensus 55 ~g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeec---cceEEEEEeccceeEEEChHHhhhhcccc
Confidence 45666665443 3346889999642211 01110 0011112222 23334444567777788877544432222
Q ss_pred cCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCc---eEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 019258 110 NSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGG---EFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLR 186 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~ 186 (343)
..+.=..+...++.++.+....++..-|.++-. .+.-..++..-..+.-+.|-.+...+-.=.+..|..-|..
T Consensus 129 ----y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 129 ----YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ----cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCC
Confidence 234456666665556666555566666655422 1222222221112344444433333322223333333443
Q ss_pred ccCCCCCeeEEeccc-----CCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 187 RAGSGGPVLQFKGNF-----GSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~-----~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
+ ++.+..+.... .....+..-.+.|++.|++..++++|
T Consensus 205 s---GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 S---GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred C---CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3 33222221110 00111124578999999887777775
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.23 E-value=23 Score=32.30 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=75.0
Q ss_pred eEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEE
Q 019258 160 FNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFA 235 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~i 235 (343)
-..+..++ ...+++...++.|.+.|... .........- ..-..+++.|++..+.++-. .++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc---cceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEE
Confidence 44566666 44666666789999999766 3333333211 23668999999988887766 4788999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|-.+........ .-..+ ..+++.|++.. ..++-+.+++|.+.+...
T Consensus 145 id~~t~~~~~~~~-----------vG~~P-~~~a~~p~g~~---------vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 145 IDAATNKVTATIP-----------VGNTP-TGVAVDPDGNK---------VYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred EeCCCCeEEEEEe-----------cCCCc-ceEEECCCCCe---------EEEEecCCCeEEEEeCCC
Confidence 9987754444422 11234 88999999884 344446888999988543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.02 E-value=31 Score=33.57 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=84.6
Q ss_pred CeEEEEec--CCEEEEEe------CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCc-EEEEEcc
Q 019258 117 PISGVDLT--GSECVSVG------EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYG-LQWWDLR 186 (343)
Q Consensus 117 ~v~~~~~~--~~~~~s~s------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~-i~iwd~~ 186 (343)
.+.+.+++ ++.++..- .|..-.+|-...+.....+.... ....-.|+| +..+.+...... +++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~---~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH---SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC---CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 45666666 66665544 34444455332222233333322 367778888 566666654322 2222211
Q ss_pred ccCCCCCeeEEecccCCCC-CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc-cCCceeeeeecCCCCcccccCCcccc
Q 019258 187 RAGSGGPVLQFKGNFGSQG-KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL-RWQQQSIVLSGVGTGEAVTHSLSESE 264 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~h~~~ 264 (343)
. ...+..+....+... ...+.|..+.|+|+|..+.+.. +|+|++=-+ |.......+.... ... ..-...
T Consensus 428 ~---~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~--~l~--~~l~~~ 498 (591)
T PRK13616 428 A---TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPR--EVG--PGLGDT 498 (591)
T ss_pred C---CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccE--Eee--cccCCc
Confidence 1 112221111000000 0015699999999998776654 477776322 1111111220000 000 122334
Q ss_pred EEEEEEeecCCCCcCCCCCccceEEEecCC--eEEEEecCCCccccccc---ccccceeeecC
Q 019258 265 VWEVQYDCHTKSSNISSSRVLPAMFCSEDG--ILAVVEQGEEPFELLAE---PCAINSFDIDP 322 (343)
Q Consensus 265 v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--~i~~~~~~~~~~~~~~~---~~~i~s~~~~~ 322 (343)
+.++.|.+++. |+.+..++ .++..+.+.....++.. ..++.+++-++
T Consensus 499 ~~~l~W~~~~~-----------L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 499 AVSLDWRTGDS-----------LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred cccceEecCCE-----------EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 57899998765 33333333 35554544333333222 35666777665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.50 E-value=12 Score=35.11 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=71.7
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--------CCEEEEEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 128 CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 128 ~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+..++....+.-.|++.++ +...+..++. + -+.|.| ...-+.|-++..|---|.|. .+..+.....
T Consensus 483 ~~dg~~~~kLykmDIErGk-vveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~--~gNKi~v~es 556 (776)
T COG5167 483 YLDGGERDKLYKMDIERGK-VVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA--RGNKIKVVES 556 (776)
T ss_pred EecCCCcccceeeecccce-eeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccc--cCCceeeeee
Confidence 3456666677777888884 6666666665 3 455555 12234455566666678887 4444433221
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
..... . ....|..-..+ ..+|+|+..|.|++||- -+......+ ++....|..|....++..
T Consensus 557 KdY~t-K--n~Fss~~tTes--GyIa~as~kGDirLyDR-ig~rAKtal----------P~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 557 KDYKT-K--NKFSSGMTTES--GYIAAASRKGDIRLYDR-IGKRAKTAL----------PGLGDAIKHIDVTANGKH 617 (776)
T ss_pred hhccc-c--ccccccccccC--ceEEEecCCCceeeehh-hcchhhhcC----------cccccceeeeEeecCCcE
Confidence 11000 0 11223333333 35688999999999993 222222222 445677888888887774
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.13 E-value=7 Score=32.58 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=42.4
Q ss_pred CeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE------EcC------CCccceEEEEeCC-CCEEEEEeCCCcEEEE
Q 019258 117 PISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV------YDG------NGLVGFNCVKWAS-PTEFVTGGFGYGLQWW 183 (343)
Q Consensus 117 ~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~l~t~~~d~~i~iw 183 (343)
++..+...++++++...+|.+.+||+.+.+....- +.. .....|..+.... +..+++- .+|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEe
Confidence 55667777999999999999999999887532221 110 1112455555555 3334433 34556666
Q ss_pred Eccc
Q 019258 184 DLRR 187 (343)
Q Consensus 184 d~~~ 187 (343)
|...
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 6544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.05 E-value=24 Score=31.20 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=57.1
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
..-+.|+|+|++..++++-+..+.|.-|++.....+..-. ...+......+.--.++...++. ++
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----~~~~~~~~~~G~PDG~~vDadG~-----------lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----RGFVDFDEEPGLPDGMAVDADGN-----------LW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----ceEEEccCCCCCCCceEEeCCCC-----------EE
Confidence 4467899999998888888888889988875311000000 00000011223333444444433 44
Q ss_pred EEecC-C-eEEEEecCCCcccccccc-cccceeeecCCCCCeeEEcc
Q 019258 289 FCSED-G-ILAVVEQGEEPFELLAEP-CAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 289 s~s~d-g-~i~~~~~~~~~~~~~~~~-~~i~s~~~~~~~~~~l~~~~ 332 (343)
++... | .|..++...+......-| ..+.++.+-+.+.+.|...+
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 33333 2 777777765444444445 55677777654334444333
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=85.15 E-value=14 Score=27.92 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=64.9
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccC-----CCCCeeEEecccCCCCCcccCeEEEEEcCC----CCeEEEEEecCCc
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAG-----SGGPVLQFKGNFGSQGKASGMIHSVDIHPS----RKHTCLAGGSSGT 232 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~----~~~~~~sg~~dg~ 232 (343)
-+|.. ...|+.++..++|.|++..... ...++..+... ..|++++-.|- ++.+|+.|+. -.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--------~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--------QEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC--------CceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 35555 5578888899999999876400 01223333221 45777765542 3566777665 58
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+..||..+...... +.-...|.++.+-.-+.. .. .++..+.+-.|.-+|.
T Consensus 75 llaYDV~~N~d~Fy------------ke~~DGvn~i~~g~~~~~----~~---~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 75 LLAYDVENNSDLFY------------KEVPDGVNAIVIGKLGDI----PS---PLVIVGGNCSIQGFDY 124 (136)
T ss_pred EEEEEcccCchhhh------------hhCccceeEEEEEecCCC----CC---cEEEECceEEEEEeCC
Confidence 99999976543222 234577888887533221 00 4666666666666654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.10 E-value=19 Score=33.29 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=74.8
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeee-ccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVD-ENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~-~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~ 144 (343)
....|+|.+++|+ +...|++--.+.+|.+++....+..... .........|.++.|. ...++.....| +-+|....
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence 3456799999999 8889999999999999988533332221 1112233468999998 77788777777 77777655
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCE-EEEEe-CCCcEEEEEccc
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTE-FVTGG-FGYGLQWWDLRR 187 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~t~~-~d~~i~iwd~~~ 187 (343)
.+...+....+.. .|.=..|.+ .+. +++.+ ..+++.-+.+++
T Consensus 142 ekrslRlVks~~~-nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 142 EKRSLRLVKSHNL-NVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhccc-CccEEEEccccceEeeeccccccccccEEEee
Confidence 4444455444444 565555665 332 33333 355555555554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.98 E-value=44 Score=33.38 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=50.8
Q ss_pred CeEEEEec--CCEEEEEeCCCcEEEEECCC----------Cc---eEEEE------EcCCCccceEEEEeCC----CCEE
Q 019258 117 PISGVDLT--GSECVSVGEDGRVNLVSVIG----------GG---EFKRV------YDGNGLVGFNCVKWAS----PTEF 171 (343)
Q Consensus 117 ~v~~~~~~--~~~~~s~s~dg~v~~wd~~~----------~~---~~~~~------~~~~~~~~v~~~~~~~----~~~l 171 (343)
.|..+..+ |..++..|..| |.+..+.. ++ .++.. +.......|..+.|+| +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 57888888 88888888876 44444421 11 11111 1122234689999999 4678
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEE
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~ 197 (343)
+.=..|+++|+||+.. +..+...+
T Consensus 165 ~vLtsdn~lR~y~~~~--~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD--PQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCC--CCCCeEEE
Confidence 8899999999999976 44554443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.75 E-value=28 Score=30.99 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCcEEEEEcc-Cceeeeee-ccCCccccCeE-EEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcC
Q 019258 81 HQSLVAASTLSGSLHVLSSA-MQVLLSVD-ENSGFHVGPIS-GVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDG 154 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~-~~~~~~~~-~~~~~h~~~v~-~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~ 154 (343)
.++.|.+-+.||.+.-..+. .+++.... +....-..++. .-.+. +..++-.+.+|.|+--|+.... .....+.-
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 45678899999999888887 33332111 11111122222 22222 5677778899999888887643 11111111
Q ss_pred CC---------ccceEEEEeCC-CCEEEEEeC--------CC--cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 155 NG---------LVGFNCVKWAS-PTEFVTGGF--------GY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 155 ~~---------~~~v~~~~~~~-~~~l~t~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
.. -....-+++++ .++|..--. |+ .|-++|+.+ .+.+.++... .++.+|
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t---~krv~Ri~l~--------~~~~Si 294 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT---HKRVARIPLE--------HPIDSI 294 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT---TEEEEEEEEE--------EEESEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC---CeEEEEEeCC--------CccceE
Confidence 00 01344566666 444443322 22 356667777 6667666532 457789
Q ss_pred EEcCCCCeEEEE-EecCCcEEEEEccCCceeeeee
Q 019258 215 DIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 215 ~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.++.+...+|.+ ...++.+.+||..+++.....-
T Consensus 295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 998776555544 4568999999999975554444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=84.72 E-value=31 Score=31.37 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCEEEEEe-CCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccc
Q 019258 125 GSECVSVG-EDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 125 ~~~~~s~s-~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
|+.|+.++ .||. +.+.|+.++ ...++.+.... .......++ .+.++-......|+-.|+++
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~-~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATG-EITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT
T ss_pred CCEEEEEeccCCCcceEEEEcccC-EEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCc
Confidence 55555544 4554 555688888 46777665433 222334456 66666666677888889887
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.34 E-value=47 Score=33.19 Aligned_cols=89 Identities=18% Similarity=0.120 Sum_probs=51.3
Q ss_pred ceEEEEeCC-CCEEEEEeCCCcEEEEEccc-cCC------CCC-e--eEEeccc-CCCCCcccCeEEEEEcCCC---CeE
Q 019258 159 GFNCVKWAS-PTEFVTGGFGYGLQWWDLRR-AGS------GGP-V--LQFKGNF-GSQGKASGMIHSVDIHPSR---KHT 223 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~-~~~------~~~-~--~~~~~~~-~~~~~~~~~i~~v~~~p~~---~~~ 223 (343)
.|..+..++ +..++..|. ..|.|-.+.. .+. +.. + ..+.... -........|..+.|||.+ .++
T Consensus 86 ~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 578888888 666666665 4455555532 000 111 1 1111000 0000112569999999985 444
Q ss_pred EEEEecCCcEEEEEccCCceeeeeec
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+.=++|+++++||+.....|.....
T Consensus 165 -~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 -VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred -EEEecCCEEEEEecCCCCCCeEEEE
Confidence 5668899999999988777666543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.26 E-value=25 Score=34.71 Aligned_cols=113 Identities=8% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCcEEEEEccc-------c--CC--------CCCeeEEecccCCCCCcccCeEEEEEc--CCCCeEEEEEe
Q 019258 168 PTEFVTGGFGYGLQWWDLRR-------A--GS--------GGPVLQFKGNFGSQGKASGMIHSVDIH--PSRKHTCLAGG 228 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~-------~--~~--------~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~~~sg~ 228 (343)
...|+.+.+||.|.+|-++. . .. -+|...+.. .....+++++ .. ..++|+++
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v--------~~SaWGLdIh~~~~-~rlIAVSs 184 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV--------GASAWGLDIHDYKK-SRLIAVSS 184 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec--------CCceeEEEEEecCc-ceEEEEec
Confidence 66788999999999997631 0 00 001111111 1568899998 54 45778888
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
....|.+|-+........... ...|..-|.+|.|-++..... +. ..|++++-.|.+++|+-
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~--------s~~~~hNIP~VSFl~~~~d~~--G~--v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVP--------SHQHSHNIPNVSFLDDDLDPN--GH--VKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEecccccccccc--------ccccccCCCeeEeecCCCCCc--cc--eEEEEEeccCcEEEEEE
Confidence 878888886543211111100 023556788999998763211 11 16888999999988665
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.11 E-value=32 Score=31.00 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=123.7
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC----------------CCCeeEEEcc-
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP----------------PTRISSLSTS- 80 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~----------------~~~v~~v~~~- 80 (343)
...+....|+| +++.+|-.. +++ |++.++.... ...++.-+. -+.-.++-|+
T Consensus 42 ~~~~~~~~~sP----~g~~~~~v~-~~n-----ly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp 110 (353)
T PF00930_consen 42 PPKLQDAKWSP----DGKYIAFVR-DNN-----LYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP 110 (353)
T ss_dssp ETTBSEEEE-S----SSTEEEEEE-TTE-----EEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T
T ss_pred ccccccceeec----CCCeeEEEe-cCc-----eEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECC
Confidence 46799999999 788877664 333 6677764331 111111110 1223567788
Q ss_pred CCCeEEEEcC-CCcEEEEEccCceeeeeeccCCccc--cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-EEEc-
Q 019258 81 HQSLVAASTL-SGSLHVLSSAMQVLLSVDENSGFHV--GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK-RVYD- 153 (343)
Q Consensus 81 ~~~~l~~~s~-dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~-~~~~- 153 (343)
++..|+.... +..|+.+.+. .....+. ..+..+.+- |..-.. -.+.++|+.+++... ....
T Consensus 111 d~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 111 DSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HH
T ss_pred CCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccc
Confidence 6666655443 4455555443 1100000 122333322 222211 136678887764221 1110
Q ss_pred -CCCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc-CCCCeEEE
Q 019258 154 -GNGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH-PSRKHTCL 225 (343)
Q Consensus 154 -~~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~~~ 225 (343)
......+..+.|.+ +..|+..-. ...+.+.|..+ +..-..+.... .+.- ..-....+. +++..++.
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t---g~~~~~~~e~~--~~Wv-~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST---GETRVVLEETS--DGWV-DVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---TTCEEEEEEES--SSSS-SSSSEEEE-TTTSSEEEE
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---CceeEEEEecC--Ccce-eeecccccccCCCCEEEE
Confidence 12222688899988 442443322 22355566655 33221122111 1000 112244544 66666666
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE-EEEeecCCCCcCCCCCccceEEEecCC----eEEEEe
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-VQYDCHTKSSNISSSRVLPAMFCSEDG----ILAVVE 300 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~~~~~~~l~s~s~dg----~i~~~~ 300 (343)
....||--.||-+.........+ ....-.|.. +.+++++.. ..+++..++ .|+..+
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~l----------T~G~~~V~~i~~~d~~~~~---------iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQL----------TSGDWEVTSILGWDEDNNR---------IYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEES----------S-SSS-EEEEEEEECTSSE---------EEEEESSGGTTSBEEEEEE
T ss_pred EEEcCCCcEEEEEcccccceecc----------ccCceeecccceEcCCCCE---------EEEEecCCCCCceEEEEEE
Confidence 66688865555433322222232 223445644 667777664 444555433 466666
Q ss_pred cC-CCcccccccccccc-eeeecCCCCCeeEEcc
Q 019258 301 QG-EEPFELLAEPCAIN-SFDIDPQNPSDVICSL 332 (343)
Q Consensus 301 ~~-~~~~~~~~~~~~i~-s~~~~~~~~~~l~~~~ 332 (343)
.. ....+.+....... ++.++| ++++++-..
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Sp-dg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSP-DGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-T-TSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECC-CCCEEEEEE
Confidence 66 55566666654444 999999 567766443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.62 E-value=18 Score=35.69 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=67.3
Q ss_pred CeEEEEec----CCEEEEEeCCCcEEEEECCC-------C----ce------EEEEEcCCCccceEEEEeC--C-CCEEE
Q 019258 117 PISGVDLT----GSECVSVGEDGRVNLVSVIG-------G----GE------FKRVYDGNGLVGFNCVKWA--S-PTEFV 172 (343)
Q Consensus 117 ~v~~~~~~----~~~~~s~s~dg~v~~wd~~~-------~----~~------~~~~~~~~~~~~v~~~~~~--~-~~~l~ 172 (343)
.|+.+.+. .+.|+.|.+||.|.+|.+++ . .. +...+...-...+++++++ . .+.++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 35555444 56788899999999997622 0 00 0001111111258999998 6 55666
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC--C---eEEEEEecCCcEEEEEc
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR--K---HTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~---~~~~sg~~dg~v~iwd~ 238 (343)
.++....|.+|-... ..........+ +.. .-|.+|+|-++. + ..+++++=.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l--~~~r~~~~~s~---~~~--hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFAL--VDERFYHVPSH---QHS--HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEec--ccccccccccc---ccc--cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 666677888876654 11111011000 111 448899987754 2 25667788999999988
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.38 E-value=37 Score=31.23 Aligned_cols=198 Identities=13% Similarity=-0.011 Sum_probs=95.0
Q ss_pred eeeEEecCCCCCCCCeEEEE-eecCCCCCCceeeeeCCCCCCCCCCccCCCCCC-eeEEEcc-CCCeEEEEcCCC-----
Q 019258 21 IDAVRWLPPLSPLSKLAVLA-IYDTDADSPSLETHSISLPASLTPHSQWTPPTR-ISSLSTS-HQSLVAASTLSG----- 92 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~-s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~-v~~v~~~-~~~~l~~~s~dg----- 92 (343)
+...+++| +++++|-+ +..+. ....|++.|+..... +.. ..... ...+.|. ++..|+-...+.
T Consensus 126 ~~~~~~Sp----dg~~la~~~s~~G~-e~~~l~v~Dl~tg~~---l~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSP----DGKRLAYSLSDGGS-EWYTLRVFDLETGKF---LPD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETT----TSSEEEEEEEETTS-SEEEEEEEETTTTEE---EEE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECC----CCCEEEEEecCCCC-ceEEEEEEECCCCcC---cCC-cccccccceEEEeCCCCEEEEEEeCcccccc
Confidence 34567777 88888765 33332 234578999965321 111 11111 2238888 555555544332
Q ss_pred ------cEEEEEccCcee--eeeeccCCccccCeEEEEec--CCEEEE-EeCC---CcEEEEECCCC----ceEEEEEcC
Q 019258 93 ------SLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT--GSECVS-VGED---GRVNLVSVIGG----GEFKRVYDG 154 (343)
Q Consensus 93 ------~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~--~~~~~s-~s~d---g~v~~wd~~~~----~~~~~~~~~ 154 (343)
.|+.|++.+... ..+.+.. .+......+..+ +++++. .... ..+.+.|+..+ ..+..+...
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~-~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEP-DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-T-TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeec-CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 256666653321 2333221 111124566666 666553 3332 34677787763 234444433
Q ss_pred CCccceEEEEeCCCCEEEEEeC---CCcEEEEEccccCCCCC--ee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 155 NGLVGFNCVKWASPTEFVTGGF---GYGLQWWDLRRAGSGGP--VL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 155 ~~~~~v~~~~~~~~~~l~t~~~---d~~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
... ....+.......++.... .+.|.-.++.. ... .. .+..+.. . ..+..+... +.++++.-.
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~---~~~~~~~~~l~~~~~-~----~~l~~~~~~--~~~Lvl~~~ 344 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD---PSPAEWWTVLIPEDE-D----VSLEDVSLF--KDYLVLSYR 344 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTS---TSGGGEEEEEE--SS-S----EEEEEEEEE--TTEEEEEEE
T ss_pred CCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccc---cccccceeEEcCCCC-c----eeEEEEEEE--CCEEEEEEE
Confidence 332 234444343333433322 56666677766 222 22 2332220 1 235555543 457888877
Q ss_pred cCCc--EEEEEcc
Q 019258 229 SSGT--VFAWDLR 239 (343)
Q Consensus 229 ~dg~--v~iwd~~ 239 (343)
.++. |+++|+.
T Consensus 345 ~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 345 ENGSSRLRVYDLD 357 (414)
T ss_dssp ETTEEEEEEEETT
T ss_pred ECCccEEEEEECC
Confidence 7775 7888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=22 Score=34.67 Aligned_cols=104 Identities=10% Similarity=0.107 Sum_probs=59.3
Q ss_pred cCeEEEEEcCCCCeEEEEEe-----cCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCC
Q 019258 209 GMIHSVDIHPSRKHTCLAGG-----SSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~-----~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
..+...+++|++..+.++.. .|. .+.+++... ....+. .+ .....-.|+|++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt----------~g--~~~t~PsWspDG~------ 409 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVL----------EG--HSLTRPSWSLDAD------ 409 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeee----------cC--CCCCCceECCCCC------
Confidence 34788999999987766652 233 455556532 222222 11 2367788999876
Q ss_pred CCccceEEEecC------------CeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEE
Q 019258 282 SRVLPAMFCSED------------GILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 282 ~~~~~l~s~s~d------------g~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
.+++.+.. +.+++.......... .....|.++.|+| +|..++.-.+ +.+++
T Consensus 410 ----~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSp-DG~RiA~i~~-g~v~V 472 (591)
T PRK13616 410 ----AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSR-DGVRAAMIIG-GKVYL 472 (591)
T ss_pred ----ceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECC-CCCEEEEEEC-CEEEE
Confidence 45555432 333332221111111 2245799999999 6787777653 57776
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.04 E-value=60 Score=33.41 Aligned_cols=123 Identities=14% Similarity=0.031 Sum_probs=74.4
Q ss_pred CCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEE
Q 019258 60 ASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNL 139 (343)
Q Consensus 60 ~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~ 139 (343)
+..+++...+.++.|.+++--.+ .+++ +....+++|++...+.+...+.. .-...|+.+++.+..++.|...-.|.+
T Consensus 924 ~~lellh~T~~~~~v~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt~~~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen 924 DKLELLHKTEIPGPVGAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQTYGARIVVGDIQESVHF 1000 (1205)
T ss_pred ceeeeeeccCCCccceEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhc-cCceEEEEEeecceEEEEeeccceEEE
Confidence 34556777778888988886533 4444 45668999999865544333321 124578899999777777766556766
Q ss_pred EECCCC-ceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 019258 140 VSVIGG-GEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 140 wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~ 187 (343)
+..+.. .+...+.+..-.-.++++.+...+.++.+..-|.+ |=+|.
T Consensus 1001 ~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi--~~vR~ 1047 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNI--AVVRI 1047 (1205)
T ss_pred EEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcE--EEEEC
Confidence 555442 23444443332225777777665556656555544 44444
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=47 Score=31.46 Aligned_cols=146 Identities=10% Similarity=-0.022 Sum_probs=65.2
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC---cEEEEEccCceeeeeec
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG---SLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg---~v~v~~~~~~~~~~~~~ 109 (343)
++...+.|+.++. .+++.|+... ..+.....++.+-.-.++.-.++.+.+.|+.++ .+..||...+.-.....
T Consensus 318 ~~~iYviGG~~~~---~sve~ydp~~-n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNP---TSVERWFHGD-AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCC---CceEEEECCC-CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 4456667766532 2456776533 223333344432222223323677777777653 46677766433222211
Q ss_pred cCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC-----CcEEEEE
Q 019258 110 NSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG-----YGLQWWD 184 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d-----~~i~iwd 184 (343)
.. ........+.+.+...+.| |.+..||.++++ -...........-.++....+...+.||.+ ..+..||
T Consensus 394 m~-~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~-W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 394 TY-YPHYKSCALVFGRRLFLVG---RNAEFYCESSNT-WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CC-CccccceEEEECCEEEEEC---CceEEecCCCCc-EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 11 1111112223335555555 357788887653 222211111001112222335566667654 3455566
Q ss_pred ccc
Q 019258 185 LRR 187 (343)
Q Consensus 185 ~~~ 187 (343)
...
T Consensus 469 ~~~ 471 (480)
T PHA02790 469 NRT 471 (480)
T ss_pred CCC
Confidence 544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.48 E-value=49 Score=31.30 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=26.6
Q ss_pred ccEEEEEEeecC--CCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 263 SEVWEVQYDCHT--KSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 263 ~~v~~v~~~p~~--~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
-.+.+++|||+. .. .|..-+.|+.|++++...
T Consensus 166 ltl~Qa~WHP~S~~D~---------hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDP---------HLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeeeccccCCccCCc---------eEEEEecCcEEEEEecCC
Confidence 457889999987 44 788889999999998754
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.77 E-value=7.1 Score=39.98 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=64.0
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
-...++.|.|.. ...++....|.. |++..+... ......++....+++++|+ .+..++.|-.+|++.-|
T Consensus 156 vf~~~~~wnP~v---p~n~av~l~dls-----l~V~~~~~~--~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 156 VFQLKNVWNPLV---PLNSAVDLSDLS-----LRVKSTKQL--AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred cccccccccCCc---cchhhhhccccc-----hhhhhhhhh--hhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 457789999953 344555556643 445554221 1224446777889999999 89999999999999888
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSV 131 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~ 131 (343)
.-.-.....+.+-...-...|.+|.|. ...++..
T Consensus 226 ~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 226 EPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 665221111111111124689999998 4444433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.74 E-value=22 Score=33.31 Aligned_cols=133 Identities=21% Similarity=0.225 Sum_probs=83.3
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-------eEEEEEecCCcEEEEEccCCce
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-------HTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-------~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
+..++.-..+.--|++. ++.+.....+. .+ -+.+.|... .. +.|-++..|.-.|.|....
T Consensus 483 ~~dg~~~~kLykmDIEr---GkvveeW~~~d--------dv-vVqy~p~~kf~qmt~eqt-lvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 483 YLDGGERDKLYKMDIER---GKVVEEWDLKD--------DV-VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred EecCCCcccceeeeccc---ceeeeEeecCC--------cc-eeecCCchhHHhcCccce-EEeecccceEEecccccCC
Confidence 44555566677777777 67666666543 13 556666421 22 3577788888889876443
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec-CCCccccccc-ccccceeeec
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ-GEEPFELLAE-PCAINSFDID 321 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~-~~~~~~~~~~-~~~i~s~~~~ 321 (343)
.+.... ....+..-.|+....+.++ +++.+|..|-|+++|. +....+.++. ...|--+++.
T Consensus 550 Ki~v~e-----------sKdY~tKn~Fss~~tTesG------yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 550 KIKVVE-----------SKDYKTKNKFSSGMTTESG------YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred ceeeee-----------ehhccccccccccccccCc------eEEEecCCCceeeehhhcchhhhcCcccccceeeeEee
Confidence 222210 1223333334432222122 8999999999999986 4445555555 5689999999
Q ss_pred CCCCCeeEEccCC
Q 019258 322 PQNPSDVICSLEW 334 (343)
Q Consensus 322 ~~~~~~l~~~~~~ 334 (343)
. +|.+++|.+..
T Consensus 613 a-~Gk~ilaTCk~ 624 (776)
T COG5167 613 A-NGKHILATCKN 624 (776)
T ss_pred c-CCcEEEEeecc
Confidence 8 78999999865
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.25 E-value=81 Score=33.07 Aligned_cols=159 Identities=9% Similarity=0.101 Sum_probs=90.7
Q ss_pred CCCCCCeeEEEcc----------CCCeEEEEcC---------CCcEEEEEccC-----ceeee---eec-cCCccccCeE
Q 019258 68 WTPPTRISSLSTS----------HQSLVAASTL---------SGSLHVLSSAM-----QVLLS---VDE-NSGFHVGPIS 119 (343)
Q Consensus 68 ~~~~~~v~~v~~~----------~~~~l~~~s~---------dg~v~v~~~~~-----~~~~~---~~~-~~~~h~~~v~ 119 (343)
++....|++++.. ...+|++|+. -|.++||++-+ +++.. +.. ....-+|+|.
T Consensus 1022 fq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVs 1101 (1366)
T KOG1896|consen 1022 FQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVS 1101 (1366)
T ss_pred cCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceE
Confidence 3444456666654 2457888864 58999999741 11111 000 1123567888
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE
Q 019258 120 GVDLTGSECVSVGEDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ 196 (343)
Q Consensus 120 ~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~ 196 (343)
.++-...+|+++... .|.+|+++...... .+++. +++-.+... .+.++.|.--..|.+.-... ++. +
T Consensus 1102 avceV~G~l~~~~Gq-KI~v~~l~r~~~ligVaFiD~----~~yv~s~~~vknlIl~gDV~ksisfl~fqe----ep~-r 1171 (1366)
T KOG1896|consen 1102 AVCEVRGHLLSSQGQ-KIIVRKLDRDSELIGVAFIDL----PLYVHSMKVVKNLILAGDVMKSISFLGFQE----EPY-R 1171 (1366)
T ss_pred EEEEeccEEEEccCc-EEEEEEeccCCcceeeEEecc----ceeEEehhhhhhheehhhhhhceEEEEEcc----Cce-E
Confidence 887666666666554 49999995432232 33322 233333344 67788888788888766533 332 2
Q ss_pred EecccCCCCCcccCeEEEEEcCCCCeE-EEEEecCCcEEEEEc
Q 019258 197 FKGNFGSQGKASGMIHSVDIHPSRKHT-CLAGGSSGTVFAWDL 238 (343)
Q Consensus 197 ~~~~~~~~~~~~~~i~~v~~~p~~~~~-~~sg~~dg~v~iwd~ 238 (343)
+.... ++...-.++++.|--+|.++ |+++..||.|.+|-.
T Consensus 1172 lsL~s--rd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1172 LSLLS--RDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred EEEee--cCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 22111 11111347888887666544 566778999888854
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.23 E-value=0.45 Score=46.83 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=61.7
Q ss_pred CCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEcc--Cce---eeeeeccCCccccCeEEEEec----CC-EEEEEeCCCc
Q 019258 69 TPPTRISSLSTS--HQSLVAASTLSGSLHVLSSA--MQV---LLSVDENSGFHVGPISGVDLT----GS-ECVSVGEDGR 136 (343)
Q Consensus 69 ~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~--~~~---~~~~~~~~~~h~~~v~~~~~~----~~-~~~s~s~dg~ 136 (343)
.++|.|..+.|. +-..+. -.-|.+.||++. .++ .+.+... ......+.-+.|. .+ ++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~-~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPI-TPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeec-CcCCCCcceeeecccccccceeeeccCCCc
Confidence 356778888886 222222 334678899986 211 1111111 1122234555565 33 3344456778
Q ss_pred EEEEECCCCceEEEEEcCCCccceEEEE-----------eCC-CCEEEEEeCCCcEEEEEccc
Q 019258 137 VNLVSVIGGGEFKRVYDGNGLVGFNCVK-----------WAS-PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 137 v~~wd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~-~~~l~t~~~d~~i~iwd~~~ 187 (343)
+++...++.. +.++..|.. .+..++ .+| +..|+++..||.++.|.+--
T Consensus 207 i~lL~~~ra~--~~l~rsHs~-~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 207 IRLLNINRAL--RSLFRSHSQ-RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eeEeeechHH--HHHHHhcCC-CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 8887765532 122333332 233222 356 78899999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 343 | ||||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 7e-10 |
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 4e-07
Identities = 33/288 (11%), Positives = 68/288 (23%), Gaps = 27/288 (9%)
Query: 61 SLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISG 120
++T + T + +S + + + +L S +L E I
Sbjct: 73 TITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD--SANEIIY 130
Query: 121 V----DLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASP--TEFVTG 174
+ ++ + G + S V+ V ++
Sbjct: 131 MYGHNEVNTEYFIWADNRGTIGFQS-YEDDSQYIVHSAKSDVEYSSGVL-HKDSLLLALY 188
Query: 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234
L ++L + I V + + TV
Sbjct: 189 SPDGILDVYNLS-SPDQASSRFPVD-------EEAKIKEVKFADNGYW--MVVECDQTVV 238
Query: 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294
+DLR G T ++ D K+ S+ D
Sbjct: 239 CFDLRKD------VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292
Query: 295 ILAV-VEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341
+ E L ++ D+ + +S IV+
Sbjct: 293 KTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVA 340
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 50/344 (14%), Positives = 92/344 (26%), Gaps = 77/344 (22%)
Query: 30 LSPLSKLAVLAIYDTDADSPSLETHSISLP----ASLTPHSQWTPPTRISSLSTSHQSLV 85
+ S+ A D + H R + ++
Sbjct: 88 VQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM---PQNACVI 144
Query: 86 AASTLSGSLHVLSSAMQVLLSVDENSGF-------HVGPISGVD---LTGSECVSVGEDG 135
A T S + V H G+ +S +D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204
Query: 136 RVNLVSVIGGGEF------KRVYDG-NGLVGFNCVKWASPTE---FVTGGFGYGLQWWDL 185
+ L + + K ++ G +V V W F + L WD
Sbjct: 205 TICLWDINATPKEHRVIDAKNIFTGHTAVV--EDVAW-HLLHESLFGSVADDQKLMIWDT 261
Query: 186 RRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245
R + P + + ++ + +P + G + TV WDLR
Sbjct: 262 RNNNTSKPSHTVDAH-------TAEVNCLSFNPYSEFILATGSADKTVALWDLR------ 308
Query: 246 VLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI-----LAV 298
+ HS + E+++VQ+ + I +S D L+
Sbjct: 309 ------NLKLKLHSFESHKDEIFQVQW--SPHNETILAS-------SGTDRRLHVWDLSK 353
Query: 299 VEQGEEPFELLAEPC-----------AINSFDIDPQNPSDVICS 331
+ + + + P I+ F +P P +ICS
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-IICS 396
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 37/273 (13%), Positives = 74/273 (27%), Gaps = 36/273 (13%)
Query: 24 VRWLPPLSPLSKLAVLAIYDTDA-----DSPSLETHSISLPASLTPHSQWTPP-TRISSL 77
++W + L+ + + T P + + I++
Sbjct: 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF 272
Query: 78 STSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVG 132
+ V +G + + S + H I V + +V
Sbjct: 273 DFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYD--QVHDSYILSVSTAYSDFEDTVVSTVA 330
Query: 133 EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE--FVTGGFGYGLQWWDLRRAGS 190
DG + + K V + P ++ L+ R A +
Sbjct: 331 VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY-CPQIYSYIYSDGASSLRAVPSRAAFA 389
Query: 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSIVLSG 249
P++ + + I SR H + G + G++ + +L G
Sbjct: 390 VHPLVSRETTITA------------IGVSRLHPMVLAGSADGSLIITNA----ARRLLHG 433
Query: 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282
+ A SL +W+ Y I SS
Sbjct: 434 IKNSSATQKSL---RLWKWDYSIKDDKYRIDSS 463
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 2e-04
Identities = 40/280 (14%), Positives = 91/280 (32%), Gaps = 33/280 (11%)
Query: 71 PTRISSLSTSH-QSLVAASTLSGSLHVL-SSAMQVLLSVDENSGFHVGPISGVD-LTGSE 127
++ + + Q+L+A +T++G +H+ ++V++ +++ S I + + G
Sbjct: 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRS-----AIKEMRFVKGIY 71
Query: 128 CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYG-LQWWDLR 186
V + V ++S+ + G + + + +++ G G + +D+
Sbjct: 72 LVVINAKDTVYVLSLYSQ-KVLTTVFVPGKI--TSIDTDASLDWMLIGLQNGSMIVYDID 128
Query: 187 R-AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ--- 242
R S + + + I S+ +P T L T+ + L +
Sbjct: 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ 187
Query: 243 --QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV-- 298
+ G+ + + +Q H S +I + ED L
Sbjct: 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI--------HEDNSLVFWD 239
Query: 299 VEQGEEPFELLAEPCAINSFDIDPQN----PSDVICSLEW 334
G IN D + I + W
Sbjct: 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.98 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.84 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.83 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.8 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.75 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.69 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.67 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.59 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.58 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.57 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.56 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.54 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.53 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.51 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.5 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.46 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.41 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.41 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.38 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.38 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.35 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.34 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.34 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.29 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.28 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.28 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.26 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.26 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.25 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.25 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.24 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.23 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.22 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.22 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.21 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.19 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.17 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.15 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.14 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.13 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.11 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.11 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.09 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.07 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.04 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.0 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.93 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.92 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.84 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.83 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.81 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.76 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.76 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.72 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.66 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.56 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.54 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.51 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.5 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.46 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.42 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.41 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.4 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.4 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.34 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.31 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.27 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.26 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.25 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.24 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.21 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.21 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.2 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.12 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.1 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.03 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.01 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.99 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.98 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.96 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.89 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.83 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.81 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.79 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.71 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.71 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.69 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.63 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.6 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.46 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.41 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.37 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.37 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.28 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.27 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.05 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.03 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.91 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.9 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.82 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.78 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.68 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.62 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.6 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.55 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.44 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.44 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.42 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.37 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.28 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.24 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.08 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.01 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.76 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.75 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.72 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.71 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.71 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.69 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.45 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.18 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.87 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.19 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.19 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 93.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.88 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.82 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 93.64 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.49 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.34 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.16 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.84 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 92.58 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.55 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.52 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.36 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 92.08 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 91.5 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 91.28 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 90.74 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 90.1 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 87.99 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 87.05 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 86.86 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 85.78 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 85.07 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 83.89 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 82.22 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 81.85 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 81.8 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=298.20 Aligned_cols=287 Identities=17% Similarity=0.118 Sum_probs=224.2
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeC-----CC----CCCCCCCccCCCCCCeeEEEccCCCeEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSI-----SL----PASLTPHSQWTPPTRISSLSTSHQSLVAA 87 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~-----~~----~~~~~~~~~~~~~~~v~~v~~~~~~~l~~ 87 (343)
+...|.+++|+| ++.+|++++ |.+ +++|+. .. .....+.....+...|.+++|+.++.|++
T Consensus 29 ~~~~v~~~~fs~----dG~~l~~~s-d~~-----~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~ 98 (344)
T 4gqb_B 29 MERQLEAARYRS----DGALLLGAS-SLS-----GRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILV 98 (344)
T ss_dssp CCSEEEEEEECT----TSCEEEEEE-CCS-----SSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEE
T ss_pred ccCCEEEEEECC----CCCEEEEEe-CCc-----eEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEE
Confidence 446799999999 899999888 544 335542 11 11122333445677899999996688999
Q ss_pred EcCCCcEEEEEccCceeeeeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
|+.||+|+|||+..++.+.... ...+|.+.|++++|+ ++.|++++.|++|++||+++++ +...+..|.. .|.+++
T Consensus 99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~-~V~~~~ 176 (344)
T 4gqb_B 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAA-QVTCVA 176 (344)
T ss_dssp EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEE
T ss_pred EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCC-ceEEEE
Confidence 9999999999998655443322 233699999999998 8999999999999999999984 6666677776 899999
Q ss_pred eCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 165 WAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 165 ~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
|++ ...|++++.|++|++||++. +++...+.... +...+.+++|+|.+..++++|+.||+|++||+++.+
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRC---PKPASQIGCSA-----PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTS---SSCEEECC---------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred ecCCCCCceeeeccccccccccccc---cceeeeeecce-----eeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 998 45789999999999999998 77776654322 115699999999888889999999999999999865
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDID 321 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~ 321 (343)
....+ .+|...|++|+|+|++.. +|++||.||+|++||.... ...+..+...|++++|+
T Consensus 249 ~~~~~-----------~~h~~~v~~v~fsp~g~~---------~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 249 CVLSS-----------AVHSQCVTGLVFSPHSVP---------FLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp CCEEE-----------ECCSSCEEEEEECSSSSC---------CEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEE-----------cCCCCCEEEEEEccCCCe---------EEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence 44443 579999999999999865 7999999999999997643 34444456789999999
Q ss_pred CCCCCeeEEccCCceEEEEeCC
Q 019258 322 PQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
|++...|++++.|+.|.+|+-|
T Consensus 309 p~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECC
T ss_pred CCCCeEEEEEcCCCeEEEEECC
Confidence 9654566788899999999753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=298.29 Aligned_cols=294 Identities=18% Similarity=0.163 Sum_probs=227.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCC-CCCceeeeeCCCCCC--CCCCccCCCCCCeeEEEccCCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDA-DSPSLETHSISLPAS--LTPHSQWTPPTRISSLSTSHQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~-~~~~l~~w~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg 92 (343)
-|...|.+|+|+| ++++||+||.|... -..++++|+...... ..+....+|...|.+++|+.+..+++++.||
T Consensus 40 ~H~~~V~~v~fSp----DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg 115 (357)
T 4g56_B 40 CMEVQIGAVRYRR----DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSG 115 (357)
T ss_dssp CCCSEEEEEEECS----SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTS
T ss_pred cccCCEEEEEECC----CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCC
Confidence 3778899999999 99999999976420 012477888754322 2233445688899999999666788899999
Q ss_pred cEEEEEccCceeeeeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 93 SLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
+|+|||+...+...... ....|.+.|++++|+ ++.|++++.||+|++||+++++ ....+..|.. .|.+++|++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~-~v~~v~~s~~~ 193 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSS-EVNCVAACPGK 193 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEEECTTC
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCC-CEEEEEEccCC
Confidence 99999998554433222 223689999999998 8899999999999999999984 6666666766 899999998
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
...+++++.|++|++||++. ++++..+.... +...+.+++|+|++..++++|+.|+.|++||+++++....
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~---~~~~~~~~~~~-----~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~- 264 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRK---PKPATRIDFCA-----SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT- 264 (357)
T ss_dssp SSCEEEEETTSCEEECCTTS---SSCBCBCCCTT-----CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-
T ss_pred CceeeeeccCCceEEEECCC---Cceeeeeeecc-----ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-
Confidence 45799999999999999998 66555443221 1167999999999888899999999999999998654443
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-CcccccccccccceeeecCCCCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
+ ..|...|++|+|+|++.. +|++++.||+|++||... +....+.+..+|++++|+|.++.
T Consensus 265 ~----------~~~~~~v~~l~~sp~~~~---------~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 265 S----------AVHSQNITGLAYSYHSSP---------FLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp E----------CCCSSCEEEEEECSSSSC---------CEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTT
T ss_pred E----------eccceeEEEEEEcCCCCC---------EEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCC
Confidence 3 568999999999999865 799999999999999753 34444555678999999986778
Q ss_pred eeEEccCCceEEEEeCC
Q 019258 327 DVICSLEWESIAIVSRP 343 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~~~ 343 (343)
+|++++.|+.|++|+-|
T Consensus 326 ~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCeEEEEECC
Confidence 99999999999999853
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=290.49 Aligned_cols=285 Identities=14% Similarity=0.110 Sum_probs=230.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|.+|+|+|....++.+|+|||.|+. +++|++.............|...|.+++|+ +..++++++.|++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~-----v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDL-----VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSC-----EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCC-----EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 689999999999954456789999999975 679998543211112234688999999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||+...+.+.... .|...+.+++|+ ++.+++++.||.|++||+++++.... +..+.. .+.+++|+| +..|
T Consensus 105 ~lWd~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-~~~~~~-~v~~~~~spdg~~l 179 (321)
T 3ow8_A 105 RLWDLENGKQIKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-LDTRGK-FILSIAYSPDGKYL 179 (321)
T ss_dssp EEEETTTTEEEEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-EECSSS-CEEEEEECTTSSEE
T ss_pred EEEECCCCCEEEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-ecCCCc-eEEEEEECCCCCEE
Confidence 999998766554432 467788899998 88999999999999999998854444 444544 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. ++.+..+..+. .+|.+++|+|++. ++++|+.||+|++||++...... .+
T Consensus 180 asg~~dg~i~iwd~~~---~~~~~~~~~h~-------~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~-~~--- 244 (321)
T 3ow8_A 180 ASGAIDGIINIFDIAT---GKLLHTLEGHA-------MPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAG-TL--- 244 (321)
T ss_dssp EEEETTSCEEEEETTT---TEEEEEECCCS-------SCCCEEEECTTSC-EEEEECTTSCEEEEETTTCCEEE-EE---
T ss_pred EEEcCCCeEEEEECCC---CcEEEEEcccC-------CceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcceeE-EE---
Confidence 9999999999999988 77777777665 7899999999876 56899999999999998855443 33
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.+|...|.+++|+|++. .|++++.||+|++|+.... ..++..+...|.+++++| ++..|+
T Consensus 245 -------~~h~~~v~~~~~sp~~~----------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~ 306 (321)
T 3ow8_A 245 -------SGHASWVLNVAFCPDDT----------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIV 306 (321)
T ss_dssp -------CCCSSCEEEEEECTTSS----------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred -------cCCCCceEEEEECCCCC----------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE
Confidence 57999999999999987 7999999999999997533 334445567899999999 679999
Q ss_pred EccCCceEEEEeCC
Q 019258 330 CSLEWESIAIVSRP 343 (343)
Q Consensus 330 ~~~~~~~i~~~~~~ 343 (343)
++++|+.|++|+-|
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=293.28 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=232.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++.+|++|+.|+. |++|++...... .....|.+.|.+++|+ ++.+|++|+.||+|
T Consensus 106 gh~~~V~~~~~~p----~~~~l~s~s~Dg~-----i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 106 GHRSPVTRVIFHP----VFSVMVSASEDAT-----IKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CCSSCEEEEEECS----SSSEEEEEESSSC-----EEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred ccCCcEEEEEEcC----CCCEEEEEeCCCe-----EEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 5788999999999 8899999999975 779999653222 2223588999999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++||+...+.+.. ..+|...|.++.|+ ++.+++++.|++|++||++++. ....+..|.. .+.++.+++ +..+
T Consensus 175 ~iwd~~~~~~~~~---~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~-~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 175 KLWDFQGFECIRT---MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHRE-WVRMVRPNQDGTLI 249 (410)
T ss_dssp CEEETTSSCEEEC---CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSS-CEEEEEECTTSSEE
T ss_pred EEEeCCCCceeEE---EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCc-cEEEEEECCCCCEE
Confidence 9999986554433 34699999999998 8899999999999999999985 5555566665 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-------------------CeEEEEEecCCc
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-------------------KHTCLAGGSSGT 232 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-------------------~~~~~sg~~dg~ 232 (343)
++++.|++|++||++. .+....+..|. ..|.+++|+|++ ..++++|+.||+
T Consensus 250 ~s~s~D~~v~vwd~~~---~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVAT---KECKAELREHR-------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp EEEETTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred EEEcCCCeEEEEECCC---CceeeEecCCC-------ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 9999999999999988 67777777665 789999999963 236789999999
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccc
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLA 310 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~ 310 (343)
|++||++++.....+ .+|...|.+++|+|++. +|++++.||+|++|+.... ...+..
T Consensus 320 i~iwd~~~~~~~~~~-----------~~h~~~v~~v~~~~~g~----------~l~s~s~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 320 IKMWDVSTGMCLMTL-----------VGHDNWVRGVLFHSGGK----------FILSCADDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp EEEEETTTTEEEEEE-----------ECCSSCEEEEEECSSSS----------CEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred EEEEECCCCceEEEE-----------ECCCCcEEEEEEcCCCC----------EEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 999999986544443 46899999999999987 7999999999999997532 334444
Q ss_pred cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 311 EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 311 ~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+...|.+++++| ++.+|++|+.|+.|.+|+.
T Consensus 379 h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 379 HEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSCEEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 567899999999 5689999999999999973
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=284.23 Aligned_cols=282 Identities=17% Similarity=0.157 Sum_probs=230.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++...... .....|...|.+++|+ ++.+|++|+.|+.|
T Consensus 53 gH~~~v~~~~~s~----d~~~l~s~s~Dg~-----v~iWd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 53 GHLAKIYAMHWGT----DSRLLLSASQDGK-----LIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTTE-----EEEEETTTCCEE--EEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CCCCceEEEEECC----CCCEEEEEeCCCc-----EEEEECCCCCcc--eEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence 5888999999999 8999999999975 779998543221 2223577889999999 88999999999999
Q ss_pred EEEEccCce-eeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQV-LLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+ .........+|.+.|.++.|. +..+++++.|++|++||++++. ....+..|.. .|.+++|+| +..+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~l 199 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTG-DVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEEECTTSSEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcCCCC-ceEEEEECCCCCEE
Confidence 999997432 122222334699999999998 7789999999999999999984 5566666766 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|++|++||++. +.++..+..|. ..|.+++|+|++. ++++|+.||+|++||++.......+.
T Consensus 200 ~sg~~d~~v~~wd~~~---~~~~~~~~~h~-------~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--- 265 (340)
T 1got_B 200 VSGACDASAKLWDVRE---GMCRQTFTGHE-------SDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYS--- 265 (340)
T ss_dssp EEEETTSCEEEEETTT---CSEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred EEEeCCCcEEEEECCC---CeeEEEEcCCc-------CCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEc---
Confidence 9999999999999998 77777777665 7899999999875 56899999999999999865443332
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
+..+...|.+++|+|++. +|++++.||.|++|+.... ...+..+..+|.+++++| ++.+|+
T Consensus 266 ------~~~~~~~v~~~~~s~~g~----------~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~ 328 (340)
T 1got_B 266 ------HDNIICGITSVSFSKSGR----------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp ------CTTCCSCEEEEEECTTSS----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred ------cCCcccceEEEEECCCCC----------EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEE
Confidence 123456799999999987 7999999999999996432 234444567899999999 679999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
+|+.|+.|++|+
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=276.79 Aligned_cols=278 Identities=14% Similarity=0.154 Sum_probs=222.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|.+.|.+|+|+| ++++|++|+.|+. +++|++...... .....|...|.+++|+ ++++|++|+.|+.|
T Consensus 11 ~h~~~V~~~~fsp----~~~~l~s~~~dg~-----v~lWd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 11 NRSDRVKGIDFHP----TEPWVLTTLYSGR-----VELWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp EECSCEEEEEECS----SSSEEEEEETTSE-----EEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred CCCCceEEEEECC----CCCEEEEEcCCCc-----EEEEECCCCcee--EEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 5788999999999 8999999999975 779999653221 2223577899999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
++|++...+.+.... .|.+.|.+++|+ +..+++++.||+|++||++++..+...+..|.. .|.+++|+| +..
T Consensus 80 ~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFE---AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPST 155 (304)
T ss_dssp EEEETTTCCEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-CEEEEEECTTCTTE
T ss_pred EEEECCCCcEEEEEe---CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-cEEEEEECCCCCCE
Confidence 999998766554432 699999999999 889999999999999999887556677777776 899999998 578
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-CeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-KHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
|++++.|++|++||++. ..+...+.... . ..+..++++|.. ..++++|+.||+|++||+++++....+
T Consensus 156 l~sgs~D~~v~iwd~~~---~~~~~~~~~~~--~----~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-- 224 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQ---STPNFTLTTGQ--E----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-- 224 (304)
T ss_dssp EEEEETTSEEEEEETTC---SSCSEEEECCC--T----TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred EEEEeCCCeEEEEECCC---CCccceeccCC--c----CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--
Confidence 99999999999999988 55555554332 1 569999998742 346789999999999999986544443
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccccccccceeeecCCCCC-
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAEPCAINSFDIDPQNPS- 326 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~~~~~- 326 (343)
.+|...|..++|+|+++ .|++++.||+|++|+.... . ..+......+.+++++|+++.
T Consensus 225 ---------~~h~~~v~~~~~~p~~~----------~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 225 ---------EGHMSNVSFAVFHPTLP----------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp ---------ECCSSCEEEEEECSSSS----------EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGG
T ss_pred ---------CCCCCCEEEEEECCCCC----------EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCce
Confidence 57999999999999987 7999999999999997532 2 233333567899999985544
Q ss_pred eeEEccCCceEE
Q 019258 327 DVICSLEWESIA 338 (343)
Q Consensus 327 ~l~~~~~~~~i~ 338 (343)
++++|++++.+.
T Consensus 286 ~~asg~~~g~~~ 297 (304)
T 2ynn_A 286 YIASGFDNGFTV 297 (304)
T ss_dssp CEEEEETTEEEE
T ss_pred EEEEecCCceEE
Confidence 588888776443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=277.56 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=226.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|+|||.|+. +++|+....... .....+...|.+++|+ ++..|++|+.|+.+
T Consensus 62 gH~~~V~~~~~s~----d~~~l~s~s~Dg~-----v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 62 GHGNKVLCMDWCK----DKRRIVSSSQDGK-----VIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSE-----EEEEETTTCCEE--EEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred CCCCeEEEEEECC----CCCEEEEEeCCCe-----EEEEECCCCCcc--eEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence 5889999999999 8899999999975 779998543221 2223456789999999 88999999999999
Q ss_pred EEEEccCce--e-eeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 95 HVLSSAMQV--L-LSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 95 ~v~~~~~~~--~-~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
++|++.... . .........|.+.|.++.|+ +..+++++.|++|++||+++++ +...+..|.. .+.++++++
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~ 208 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGA-DVLCLDLAPSE 208 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSS-CEEEEEECCCS
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCC-CeEEEEEEeCC
Confidence 999986221 0 01111123589999999998 7799999999999999999985 5556666665 799999987
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
++.|++++.|++|++||++. ++++..+..|. ..|.+++|+|++. ++++|+.||+|++||++.......
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~---~~~~~~~~~h~-------~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRS---GQCVQAFETHE-------SDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCC---CcEEEEecCCC-------CCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEE
Confidence 46899999999999999998 77777777665 7899999999875 578999999999999998544333
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQN 324 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~ 324 (343)
+.. ..+...+.+++|+|++. .|++++.||+|++|+.... ...+..+..+|.+++++| +
T Consensus 278 ~~~---------~~~~~~~~~~~~s~~g~----------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-d 337 (354)
T 2pbi_B 278 YSK---------ESIIFGASSVDFSLSGR----------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-D 337 (354)
T ss_dssp ECC---------TTCCSCEEEEEECTTSS----------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-T
T ss_pred EcC---------CCcccceeEEEEeCCCC----------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-C
Confidence 321 23445789999999987 7999999999999997432 334445567899999999 6
Q ss_pred CCeeEEccCCceEEEEe
Q 019258 325 PSDVICSLEWESIAIVS 341 (343)
Q Consensus 325 ~~~l~~~~~~~~i~~~~ 341 (343)
|.+|++|+.|+.|++|+
T Consensus 338 g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 338 GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEcCCCCEEecC
Confidence 79999999999999995
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=273.59 Aligned_cols=295 Identities=12% Similarity=0.139 Sum_probs=222.2
Q ss_pred Cccc-ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSK-YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~-~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|.. .|..++|+| ++++||+|+.|+. |++|++...... .......|.+.|.+++|+ ++.+|++|+.|+
T Consensus 13 ~h~~~~v~~l~~sp----~g~~las~~~D~~-----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 13 AHPDSRCWFLAWNP----AGTLLASCGGDRR-----IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CSTTSCEEEEEECT----TSSCEEEEETTSC-----EEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcEEEEEECC----CCCEEEEEcCCCe-----EEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3666 899999999 8999999999975 779998553211 111224688999999999 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~- 167 (343)
.+++|++....... .....+|.++|.+++|+ ++.|++++.|++|++||++++. .....+..|.. .|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~p~ 161 (345)
T 3fm0_A 84 TTCIWKKNQDDFEC-VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVVWHPS 161 (345)
T ss_dssp CEEEEEECCC-EEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS-CEEEEEECSS
T ss_pred cEEEEEccCCCeEE-EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC-CeEEEEECCC
Confidence 99999987443211 22224699999999998 8899999999999999998753 23445556665 799999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
+..|++++.|++|++||++. .. +...+.+|. ..|.+++|+|++. +|++|+.||+|++||.+.+....
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~---~~~~~~~~~~~h~-------~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEE---DDWVCCATLEGHE-------STVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp SSCEEEEETTSCEEEEEEET---TEEEEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTT
T ss_pred CCEEEEEeCCCcEEEEEecC---CCEEEEEEecCCC-------CceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCc
Confidence 88999999999999999987 43 234455554 7899999999986 56899999999999975432211
Q ss_pred eeecCCCC-----cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc------ccc-----c
Q 019258 246 VLSGVGTG-----EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------FEL-----L 309 (343)
Q Consensus 246 ~~~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------~~~-----~ 309 (343)
........ .......|...|++++|+|++. .|++++.|+.|++|+..... ..+ .
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~----------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG----------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC----------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCC----------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 10000000 0000124888999999999987 79999999999999864221 111 1
Q ss_pred ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 310 AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 310 ~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+...|++++|+|+.+..|++|++|+.|++|+.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 234689999999965468999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=275.21 Aligned_cols=245 Identities=14% Similarity=0.079 Sum_probs=196.1
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC--CccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP--HSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~--~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
+...|.+++|+| + +.|++|+.|+. |++|++........ .....|.+.|++++|+ ++.+|++|+.||+
T Consensus 81 ~~~~v~~~~~s~----d-~~l~~~s~dg~-----v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~ 150 (344)
T 4gqb_B 81 TEAGVADLTWVG----E-RGILVASDSGA-----VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC 150 (344)
T ss_dssp ESSCEEEEEEET----T-TEEEEEETTSE-----EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cCCCEEEEEEeC----C-CeEEEEECCCE-----EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 345699999999 4 46889999975 77999965432211 2234789999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 168 (343)
|++||+.+.+.+... .+|.+.|+++.|+ + ..|++++.|++|++||+++++....+........+.+++|+| .
T Consensus 151 i~iwd~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSY---RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp EEEEETTTTEEEEEE---CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred EEEEECCCCcEEEEE---cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC
Confidence 999999876655444 3699999999998 3 578999999999999999885444433222333689999998 5
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
..+++|+.|++|++||++. ++++..+.+|. ..|++++|+|++..+|++|+.||+|++||++.++. .. .
T Consensus 228 ~~l~sg~~dg~v~~wd~~~---~~~~~~~~~h~-------~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~-~ 295 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKS---TSCVLSSAVHS-------QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FR-S 295 (344)
T ss_dssp TEEEEEETTSEEEEEESCC-----CCEEEECCS-------SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EE-E
T ss_pred cceEEeccCCcEEEEECCC---CcEEEEEcCCC-------CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EE-E
Confidence 6788999999999999999 78888888776 78999999999877889999999999999987542 22 2
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
.+|.+.|++|+|+|++.. .|++||.||+|++|+...+.
T Consensus 296 ----------~~H~~~V~~v~~sp~~~~---------llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 296 ----------QAHRDFVRDATWSPLNHS---------LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ----------CCCSSCEEEEEECSSSTT---------EEEEEETTSCEEEEECCC--
T ss_pred ----------cCCCCCEEEEEEeCCCCe---------EEEEEcCCCeEEEEECCCCC
Confidence 579999999999999885 67799999999999986543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=269.70 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=211.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc--CC-CCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ--WT-PPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~--~~-~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|...|.+++|+| + +|++|+.|+. +++|++..... .+... .. |.+.|.+++|+ ++.+|++++.|
T Consensus 12 ~h~~~v~~~~~s~----~--~las~~~D~~-----i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 12 LYKEKIWSFDFSQ----G--ILATGSTDRK-----IKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCSSCEEEEEEET----T--EEEEEESSSC-----EEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCceeeeccCC----C--EEEEEcCCCE-----EEEEEecCCCe-EEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 5888999999999 4 8999999975 77999964321 12222 23 88999999999 88999999999
Q ss_pred CcEEEEEccCce----eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC-c--eEEEEEcCCCccceEE
Q 019258 92 GSLHVLSSAMQV----LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-G--EFKRVYDGNGLVGFNC 162 (343)
Q Consensus 92 g~v~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-~--~~~~~~~~~~~~~v~~ 162 (343)
++|++|++.... .........+|.+.|.+++|+ +++|++++.|++|++||++.. . .+...+..|.. .|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ-DVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS-CEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC-ceEE
Confidence 999999985211 112222234699999999998 889999999999999999532 1 34555666665 8999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCC--CCeeEEecccCCCCCcccCeEEEEEcCCC-CeEEEEEecCCcEEEEEc
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSG--GPVLQFKGNFGSQGKASGMIHSVDIHPSR-KHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~~~sg~~dg~v~iwd~ 238 (343)
++|+| +..|++++.|++|++||.+. + +++..+.+|. +.|.+++|+|++ ...+++|+.|++|++||+
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~---~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYD---DDWECVAVLNGHE-------GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEET---TEEEEEEEECCCS-------SCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCC---CCeeEEEEccCCC-------CcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 99999 88999999999999999976 3 4555666665 789999999984 246789999999999999
Q ss_pred cCCc-------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc----cc
Q 019258 239 RWQQ-------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP----FE 307 (343)
Q Consensus 239 ~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~----~~ 307 (343)
+... .....+ ...|...|++++|+++ . .|++++.||+|++|+..... ..
T Consensus 229 ~~~~~~~~~~~~~~~~~---------~~~h~~~v~~v~~s~~-~----------~l~s~~~dg~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAIL---------PDVHKRQVYNVAWGFN-G----------LIASVGADGVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp EEECTTSCEEEEEEEEC---------CSCCSSCEEEEEECTT-S----------CEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred cCCCccccceeEEeeec---------ccccccceEEEEEcCC-C----------EEEEEeCCCEEEEEEcCCCceEEEec
Confidence 7532 111122 0248899999999954 3 69999999999999975431 11
Q ss_pred c-ccccc-ccceeeecCC-CCCeeEEccCCceEEEEeC
Q 019258 308 L-LAEPC-AINSFDIDPQ-NPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~-~~~~~-~i~s~~~~~~-~~~~l~~~~~~~~i~~~~~ 342 (343)
. ..+.. .|++++++|. ++.+|++|++|+.|++|+-
T Consensus 289 ~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 289 RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 1 12233 7999999984 4689999999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=279.94 Aligned_cols=288 Identities=17% Similarity=0.178 Sum_probs=225.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|+|||.|+. |++|++...... .....|...|.+++|+ ++.+|++|+.|+.+
T Consensus 64 gH~~~V~~~~~sp----~~~~l~s~s~D~~-----v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 64 GHSGKVYSLDWTP----EKNWIVSASQDGR-----LIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCSSCEEEEEECT----TSSCEEEEETTSE-----EEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred ccccEEEEEEEcC----CCCEEEEEeCCCe-----EEEEECCCCccc--eEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 5888999999999 8899999999975 779998543221 2233577889999999 88999999999999
Q ss_pred EEEEccCce----eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEE-----cCCCccceEE
Q 019258 95 HVLSSAMQV----LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVY-----DGNGLVGFNC 162 (343)
Q Consensus 95 ~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~~~~v~~ 162 (343)
++|++.... .........+|.+.|.++.|. +..+++++.|++|++||+.++. ....+ ..|.. .+.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~-~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTA-DVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCS-CEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeecccCCCCcc-CeEE
Confidence 999986321 122223345799999999987 4579999999999999999985 44443 33444 7999
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 163 VKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 163 ~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
++|++ .+.|++|+.|++|++||++. ...++..+.+|. +.|.+++|+|++. .|++|+.||+|++||+++
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~--~~~~~~~~~~h~-------~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRI--TSRAVRTYHGHE-------GDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTT--TCCCCEEECCCS-------SCCCEEEECTTSS-EEEEECSSSCEEEEETTT
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCC--CCcceEEECCcC-------CCeEEEEEecCCC-eEEEEcCCCeEEEEECCC
Confidence 99987 67899999999999999986 356677777766 7899999999976 568999999999999998
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccc----cccccc
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FEL----LAEPCA 314 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~----~~~~~~ 314 (343)
+.....+.... . ....+...|.+++|+|++. +|++++.||.|++|+..... ..+ ..+...
T Consensus 281 ~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~g~----------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 281 GHQLQVYNREP-D---RNDNELPIVTSVAFSISGR----------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp TEEEEEECCCC-S---SSCCSSCSCSEEEECSSSS----------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred CcEEEEecccc-c---ccccccCceEEEEECCCCC----------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 65544332110 0 0012334589999999988 79999999999999974322 222 223578
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|++++++| +|.+|++|+.|+.|++|+
T Consensus 347 v~~l~~s~-dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 347 ISCLGLSS-DGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCEEEECS-SSSEEEEECTTSCEEEEE
T ss_pred eEEEEECC-CCCEEEEeeCCCCEEEEe
Confidence 99999999 679999999999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=266.90 Aligned_cols=277 Identities=13% Similarity=0.134 Sum_probs=218.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--CCCC-ccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--LTPH-SQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--~~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|...|.+++|+| ..+++|+|||.|+. +++|++..... ..++ ....|...|.+++|+ ++.+|++++.|
T Consensus 15 gH~~~V~~l~~~~---~~~~~l~s~s~D~~-----v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 15 GHNGWVTSLATSA---GQPNLLLSASRDKT-----LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp CCSSCEEEEEECS---SCTTEEEEEETTSE-----EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccceEEEEEccC---CCccEEEEecCCcc-----EEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 5889999999999 45689999999975 77999853221 1112 234688999999999 88999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
++|++||+...+.+... .+|...|.+++|+ +..+++++.|++|++||++.. ....+..|.. .+.++++.| .
T Consensus 87 ~~v~~wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~-~v~~~~~~~~~ 160 (319)
T 3frx_A 87 KTLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHND-WVSQVRVVPNE 160 (319)
T ss_dssp SEEEEEETTTTEEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSS-CEEEEEECCC-
T ss_pred CEEEEEECCCCCeeEEE---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCC-cEEEEEEccCC
Confidence 99999999876655433 2699999999998 889999999999999999765 3444455655 799999988 2
Q ss_pred ------CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 169 ------TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 169 ------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
..+++++.|+.|++||++. .+....+.+|. ..|.+++|+|++. ++++|+.||+|++||++..+
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~h~-------~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQ---FQIEADFIGHN-------SNINTLTASPDGT-LIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTT---TEEEEEECCCC-------SCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCc---chhheeecCCC-------CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 2799999999999999988 66666676665 7899999999986 56899999999999999865
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cccc--------ccc
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FELL--------AEP 312 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~--------~~~ 312 (343)
....+. +...|.+++|+|++. .+++++ ++.+++|+..... ..+. ...
T Consensus 230 ~~~~~~------------~~~~v~~~~~sp~~~----------~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 230 AMYTLS------------AQDEVFSLAFSPNRY----------WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp EEEEEE------------CCSCEEEEEECSSSS----------EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred EEEEec------------CCCcEEEEEEcCCCC----------EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcC
Confidence 544443 356899999999876 555555 5568888754321 1111 113
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+.+++|+| +|++|++|+.|+.|++|+
T Consensus 287 ~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 287 PHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred cceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 4688999999 679999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=261.95 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=215.3
Q ss_pred CcccceeeEEecCCC--CCCCCeEEEEeecCCCCCCceeeeeCCCCCCC----CCC-ccCCCCCCeeEEEcc-CCCeEEE
Q 019258 16 PQSKYIDAVRWLPPL--SPLSKLAVLAIYDTDADSPSLETHSISLPASL----TPH-SQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~--~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~----~~~-~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
.|.+.|.+|+|.+.. .+++++|+||+.|+. +++|++...... .+. ....|...|.+++|+ ++.+|++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~-----v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKT-----VMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSC-----EEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCE-----EEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 588999999994321 147899999999975 779999543211 112 234688999999999 8889999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc--CCCccceEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD--GNGLVGFNCV 163 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~~ 163 (343)
++.|++|++||+...+.+... .+|.+.|.+++|+ +..+++++.|++|++||+... ....... .|.. .+.++
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~-~v~~~ 168 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSD-WVSCV 168 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSS-CEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCc-eeeee
Confidence 999999999999866554433 2699999999998 889999999999999999854 2322221 3443 79999
Q ss_pred EeCC-C----------CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 164 KWAS-P----------TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 164 ~~~~-~----------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
+|+| . ..+++++.|+.|++||.+ ......+..|. ..|.+++|+|++. +|++|+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~-------~~v~~~~~s~~g~-~l~sgs~dg~ 236 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHE-------SNVNHLSISPNGK-YIATGGKDKK 236 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCS-------SCEEEEEECTTSS-EEEEEETTCE
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCcc-------ccceEEEECCCCC-EEEEEcCCCe
Confidence 9998 3 689999999999999943 35555666665 7899999999986 5689999999
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-c---cc
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-F---EL 308 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~---~~ 308 (343)
|++||++....+.... .+...|.+++|+|++. +++++.|+.|++|+..... . .+
T Consensus 237 v~iwd~~~~~~~~~~~-----------~~~~~v~~v~~sp~~~-----------~la~~~d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 237 LLIWDILNLTYPQREF-----------DAGSTINQIAFNPKLQ-----------WVAVGTDQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp EEEEESSCCSSCSEEE-----------ECSSCEEEEEECSSSC-----------EEEEEESSCEEEEESSSCCSCSEEEC
T ss_pred EEEEECCCCcccceee-----------cCCCcEEEEEECCCCC-----------EEEEECCCCEEEEEeCCCCCCceEEe
Confidence 9999996544443333 1445799999999865 4567789999999864321 1 11
Q ss_pred c-----------ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 309 L-----------AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 309 ~-----------~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .+...|++++|+| +|++|++|++|+.|++|+
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEE
Confidence 1 1235689999999 679999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=264.41 Aligned_cols=297 Identities=13% Similarity=0.074 Sum_probs=215.5
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc----------------cCCCCCCeeEEE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS----------------QWTPPTRISSLS 78 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~----------------~~~~~~~v~~v~ 78 (343)
+.|...|.+++|+| ++++|++|+ |+ .+++|++........+. ...+...|.+++
T Consensus 61 ~~h~~~V~~v~fsp----dg~~la~g~-~~-----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 130 (393)
T 1erj_A 61 LDHTSVVCCVKFSN----DGEYLATGC-NK-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130 (393)
T ss_dssp EECSSCCCEEEECT----TSSEEEEEC-BS-----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred cCCCCEEEEEEECC----CCCEEEEEc-CC-----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence 45888999999999 899999987 43 36799985432110000 001223499999
Q ss_pred cc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 79 TS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 79 ~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
|+ ++.+|++|+.||.|++||+...+.+... .+|...|.+++|+ +..+++++.|++|++||+++++ ....+..+
T Consensus 131 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~ 206 (393)
T 1erj_A 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE 206 (393)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECS
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEEEcC
Confidence 99 8899999999999999999866554433 3699999999998 8899999999999999999985 44444444
Q ss_pred CccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 156 GLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 156 ~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
. .+.+++|+| +..+++++.|+.|++||++. +..+..+.........|...|.+++|+|++. ++++|+.||+|
T Consensus 207 ~--~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v 280 (393)
T 1erj_A 207 D--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSV 280 (393)
T ss_dssp S--CEEEEEECSTTCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred C--CcEEEEEECCCCCEEEEEcCCCcEEEEECCC---CcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEE
Confidence 3 599999998 67899999999999999988 6665555221100011227899999999986 46899999999
Q ss_pred EEEEccCCceeeeeecCC-CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccc
Q 019258 234 FAWDLRWQQQSIVLSGVG-TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLA 310 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~ 310 (343)
++||++............ ........+|...|.+++|+|++. +|++++.||.|++|+.... ...+..
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~l~sgs~D~~v~iwd~~~~~~~~~l~~ 350 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE----------YILSGSKDRGVLFWDKKSGNPLLMLQG 350 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGC----------EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC----------EEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 999998643211100000 000001156889999999999987 7999999999999997533 233334
Q ss_pred cccccceeeecCC-----CCCeeEEccCCceEEEEe
Q 019258 311 EPCAINSFDIDPQ-----NPSDVICSLEWESIAIVS 341 (343)
Q Consensus 311 ~~~~i~s~~~~~~-----~~~~l~~~~~~~~i~~~~ 341 (343)
+...|.++++++. ++.+|++|+.|+.|++|+
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 5678999998762 457899999999999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=253.51 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=220.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++...... .....|...|.+++|+ ++++|++++.||.|
T Consensus 21 gh~~~v~~~~~s~----~~~~l~s~~~dg~-----i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 21 GHTKAVSSVKFSP----NGEWLASSSADKL-----IKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccCCcEEEEEECC----CCCEEEEeeCCCe-----EEEEeCCCcccc--hhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 5889999999999 8899999999975 779998543221 2234688899999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+.+... ..|...|.++.|+ ++.+++++.||+|++||+++++ ....+..|.. .+.+++|++ +..+
T Consensus 90 ~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~l 164 (312)
T 4ery_A 90 KIWDVSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSD-PVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSS-CEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCC-cEEEEEEcCCCCEE
Confidence 99999866554433 2588999999998 8899999999999999999885 4555555655 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. ++.+..+..... .++.+++|+|++.. +++++.||.|++||+++.+....+.
T Consensus 165 ~~~~~d~~i~~wd~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~--- 231 (312)
T 4ery_A 165 VSSSYDGLCRIWDTAS---GQCLKTLIDDDN------PPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYT--- 231 (312)
T ss_dssp EEEETTSCEEEEETTT---CCEEEEECCSSC------CCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEEEC---
T ss_pred EEEeCCCcEEEEECCC---CceeeEEeccCC------CceEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEE---
Confidence 9999999999999988 666666543321 67999999999864 5789999999999999865444332
Q ss_pred CCcccccCCccccE--EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCe
Q 019258 252 TGEAVTHSLSESEV--WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 252 ~~~~~~~~~h~~~v--~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
.|...+ ....+++.+.. ++++++.||.|++|+.... ...+..+...|.+++++| ++..
T Consensus 232 --------~~~~~~~~~~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~ 293 (312)
T 4ery_A 232 --------GHKNEKYCIFANFSVTGGK---------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENI 293 (312)
T ss_dssp --------SSCCSSSCCCEEEECSSSC---------EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSE
T ss_pred --------ecCCceEEEEEEEEeCCCc---------EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCc
Confidence 344332 23345544444 7999999999999997533 233444567899999999 5688
Q ss_pred eEEcc--CCceEEEEeC
Q 019258 328 VICSL--EWESIAIVSR 342 (343)
Q Consensus 328 l~~~~--~~~~i~~~~~ 342 (343)
+++++ .|+.|.+|+.
T Consensus 294 l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 294 IASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEEECTTTCCEEEEEC
T ss_pred eEEEEccCCccEEEecC
Confidence 88775 6899999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=254.28 Aligned_cols=279 Identities=14% Similarity=0.223 Sum_probs=219.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCC-ccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL--TPH-SQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~-~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|...|++|+|+| ..+++|+|||.|+. |++|++...... .+. ....|...|.+++|+ ++.+|++++.|
T Consensus 36 GH~~~V~~v~~sp---~~~~~l~S~s~D~~-----i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 36 GHNGWVTQIATTP---QFPDMILSASRDKT-----IIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp CCSSCEEEEEECT---TCTTEEEEEETTSC-----EEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CccCCEEEEEEeC---CCCCEEEEEcCCCe-----EEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 5889999999999 34689999999975 779999653321 122 224578999999999 88999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
|.|++|+........... .+...+..+.+. +..+++++.|+.+++||+............+.. .+.+++|.+
T Consensus 108 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 183 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPNS 183 (340)
T ss_dssp SEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS-CEEEEEECSCS
T ss_pred ccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC-cccceEEccCC
Confidence 999999998554443332 355677777777 889999999999999999876444444444544 799999987
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
...+++++.|+.|++||++. .+.+..+..+. ++|.+++|+|++. ++++|+.||.|++||+++......
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~---~~~~~~~~~h~-------~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLAN---CKLKTNHIGHT-------GYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTT---TEEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEE
T ss_pred CCcEEEEEcCCCEEEEEECCC---CceeeEecCCC-------CcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeee
Confidence 45788999999999999988 67777777665 7899999999876 568999999999999998655444
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--ccc---------ccccccc
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FEL---------LAEPCAI 315 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~---------~~~~~~i 315 (343)
+. +...|..+.|+|++ .+++++.|+.|++|+..... .++ ..+...|
T Consensus 253 ~~------------~~~~v~~~~~~~~~-----------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v 309 (340)
T 4aow_A 253 LD------------GGDIINALCFSPNR-----------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 309 (340)
T ss_dssp EE------------CSSCEEEEEECSSS-----------SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred ec------------CCceEEeeecCCCC-----------ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence 33 45789999999875 57888999999999975322 111 1234679
Q ss_pred ceeeecCCCCCeeEEccCCceEEEEe
Q 019258 316 NSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++++++| ++++|++|++|+.|++|+
T Consensus 310 ~~l~~s~-dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 310 TSLAWSA-DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 9999999 679999999999999997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=252.97 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=227.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc---CCCCCCeeEEEcc-CCCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ---WTPPTRISSLSTS-HQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~---~~~~~~v~~v~~~-~~~~l~ 86 (343)
.+....|...|.+++|+| +++++++++ |+. +++|++........+.. ..|...|.+++|+ ++++|+
T Consensus 44 ~~~~~~h~~~v~~~~~~~----~~~~l~~~~-dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISN----PTRHVYTGG-KGC-----VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp EEEEECCSSCCCEEEECS----SSSEEEEEC-BSE-----EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred cceeccCCCceEEEEEec----CCcEEEEcC-CCe-----EEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEE
Confidence 345567899999999999 889999998 754 77999965443333322 2688899999999 888999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
+++.||.|++|++...+...... ...|...|.++.|+ ++.+++++.||.|++||+++++ ....+..|.. .+.+++
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~-~i~~~~ 190 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD-GASCID 190 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEE
T ss_pred EEcCCCcEEEEECCCCCcceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccC-ceEEEE
Confidence 99999999999998554222222 22588899999998 7899999999999999999984 5555565655 799999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
|+| +..+++++.|+.|++||++. ++.+..+. +. ..+.+++|+|++. ++++++.||.|++||++..+.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~-~~-------~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQHD-FT-------SQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-CS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE
T ss_pred ECCCCCEEEEEecCCcEEEEECCC---CceEeeec-CC-------CceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe
Confidence 999 88999999999999999988 56555554 22 6799999999986 567899999999999987543
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecC
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDP 322 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~ 322 (343)
.. . ..|...|.+++|+|++. +|++++.||.|++|+..... .....+..++.++.++|
T Consensus 259 -~~-~----------~~~~~~v~~~~~~~~~~----------~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 259 -YQ-L----------HLHESCVLSLKFAYCGK----------WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp -EE-E----------CCCSSCEEEEEECTTSS----------EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred -EE-E----------cCCccceeEEEECCCCC----------EEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC
Confidence 22 2 46889999999999987 79999999999999976433 33334467899999999
Q ss_pred CCCCeeEEccCCceEEEEe
Q 019258 323 QNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~ 341 (343)
++++|++++.++.|++|+
T Consensus 317 -~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 317 -DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp -TSCEEEEEETTSCEEEEE
T ss_pred -CCCEEEEecCCCeEEEEE
Confidence 569999999999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.69 Aligned_cols=297 Identities=14% Similarity=0.169 Sum_probs=229.0
Q ss_pred cccCCcccceeeEEecCCCCCCCC-eEEEE----------eecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSK-LAVLA----------IYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS 80 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~-~l~t~----------s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~ 80 (343)
+.++.+..+|.+++|+| +++ +|++| +.|+. |++|++.......++..+.|...|.+++|+
T Consensus 6 ~~~l~~~~~v~~~~~sp----~g~~~l~~g~~~g~~~~~~~~d~~-----v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s 76 (416)
T 2pm9_A 6 MVKLAEFSRTATFAWSH----DKIPLLVSGTVSGTVDANFSTDSS-----LELWSLLAADSEKPIASLQVDSKFNDLDWS 76 (416)
T ss_dssp ----CEEEESCBCCBCS----SSSCEEEEBCBSSCCCSSCCCCCC-----CEEEESSSGGGCSCSCCCCCSSCEEEEEEC
T ss_pred hhhHhhhhhcceEeeCC----CCCCEEEEEecCcccccccCCCCe-----EEEEEccCCCCCcEEEEEecCCceEEEEEC
Confidence 44555667899999999 654 99999 55543 779999664433456667899999999999
Q ss_pred -CCCeEEEEcCCCcEEEEEccCce-eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc------eEE
Q 019258 81 -HQSLVAASTLSGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG------EFK 149 (343)
Q Consensus 81 -~~~~l~~~s~dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~------~~~ 149 (343)
++.+|++++.||.|++|++.... ..........|.+.|+++.|+ +..+++++.||.|++||+.++. ...
T Consensus 77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 88899999999999999998511 111122234699999999998 6789999999999999998764 222
Q ss_pred EE--EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 150 RV--YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 150 ~~--~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
.. ...|.. .+.+++|+| ...+++++.|+.|++||++. ++++..+..+.... .+...+.+++|+|++..+++
T Consensus 157 ~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 157 TPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNS-GIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCCSCCSSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSS-CCCCCEEEEEECSSCTTEEE
T ss_pred ccccccCCCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEecccccc-ccCCceEEEEECCCCCCEEE
Confidence 21 223444 799999999 47899999999999999988 66666666542110 01277999999999877889
Q ss_pred EEecCC---cEEEEEccCCceeeeeecCCCCcccccC-CccccEEEEEEee-cCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 226 AGGSSG---TVFAWDLRWQQQSIVLSGVGTGEAVTHS-LSESEVWEVQYDC-HTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 226 sg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p-~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
+++.|+ .|++||++....+.... . .|...|.+++|+| ++. +|++++.||.|++|+
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~----------~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTL----------NQGHQKGILSLDWCHQDEH----------LLLSSGRDNTVLLWN 291 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCC----------CSCCSSCEEEEEECSSCSS----------CEEEEESSSEEEEEC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEe----------ecCccCceeEEEeCCCCCC----------eEEEEeCCCCEEEee
Confidence 999999 99999999865555555 5 7899999999999 554 899999999999999
Q ss_pred cCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 301 QGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 301 ~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.... ...+..+..+|.+++++|+.+.+|++++.++.|++|+-
T Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 7533 23333446789999999954489999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=252.51 Aligned_cols=239 Identities=15% Similarity=0.166 Sum_probs=198.3
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.|.+.|.+++|+ ++.+|++++.||.|++||+.....+.... .|..+|.++.|+ ++.+++++.|++|++||+.++
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 578899999999 88999999999999999998665554332 588899999998 899999999999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCe-eEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPV-LQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+ ....+..|.. .|.+++|+| +..+++++.|++|++||++. +..+ ..+.+|. ..|.+++|+|.+..+
T Consensus 88 ~-~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---~~~~~~~~~~h~-------~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 88 E-KVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHE-------HFVMCVAFNPKDPST 155 (304)
T ss_dssp C-EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEGGG---TTEEEEEECCCC-------SCEEEEEECTTCTTE
T ss_pred c-EEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEECCC---CcchhhhhcccC-------CcEEEEEECCCCCCE
Confidence 5 4555566665 799999999 88999999999999999988 4333 4455554 789999999976667
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecC-CCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT-KSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++|+.||+|++||++.......+. ..|...+..+.|+|.. .. +|++++.||+|++|+..
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~---------~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLT----------TGQERGVNYVDYYPLPDKP---------YMITASDDLTIKIWDYQ 216 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEE----------CCCTTCEEEEEECCSTTCC---------EEEEEETTSEEEEEETT
T ss_pred EEEEeCCCeEEEEECCCCCccceec----------cCCcCcEEEEEEEEcCCCC---------EEEEEcCCCeEEEEeCC
Confidence 8999999999999998866555554 5577889999998742 22 79999999999999975
Q ss_pred CC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 EE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. ...+..+...|.++.++| ++.+|++|+.|+.|++|+-
T Consensus 217 ~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 217 TKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp TTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred CCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 43 234444567899999999 5689999999999999974
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=257.11 Aligned_cols=287 Identities=8% Similarity=0.006 Sum_probs=222.1
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEc
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
++.+ |...|.+++|+| ++++|++|+.|+. |++|++.... .++... ..|.+.|.+++|+ ++++|++++
T Consensus 3 ~~~~-~~~~i~~~~~s~----~~~~l~~~~~d~~-----v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 3 YHSF-LVEPISCHAWNK----DRTQIAICPNNHE-----VHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp EEES-CSSCCCEEEECT----TSSEEEEECSSSE-----EEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred eecc-cCCCeEEEEECC----CCCEEEEEeCCCE-----EEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 4444 778999999999 8999999998864 7799995532 112223 3688999999999 889999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce---EEEEEcCCCccceEEEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~ 164 (343)
.||.|++|++...+....... ..|...|.++.|+ ++.+++++.||.|++||++.+.. .......|.. .+.+++
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~ 149 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLD 149 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEe-ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC-CeeEEE
Confidence 999999999986553333322 3588899999998 88999999999999999987642 2333344444 899999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEcccc---------------CCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRA---------------GSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
|+| +..+++++.|+.|++||++.. ..++++..+..+. ..+.+++|+|++. ++++++
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-~l~~~~ 221 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-------GWVHGVCFSANGS-RVAWVS 221 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-------SCEEEEEECSSSS-EEEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC-------CeEEEEEECCCCC-EEEEEe
Confidence 999 889999999999999997520 0134444555443 7899999999876 568899
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Cc-
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EP- 305 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~- 305 (343)
.||.|++||+++.+....+ ..|...|.+++|+|++. .++++ .||.|++|+... ..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~----------~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATL-----------ASETLPLLAVTFITESS----------LVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEE-----------ECSSCCEEEEEEEETTE----------EEEEE-TTSSCEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCceeEEE-----------ccCCCCeEEEEEecCCC----------EEEEE-eCCeEEEEEccCcCceE
Confidence 9999999999986544443 45788999999999876 45555 999999998755 21
Q ss_pred ---------------------------------------cccc-ccccccceeeecCCCC---CeeEEccCCceEEEEe
Q 019258 306 ---------------------------------------FELL-AEPCAINSFDIDPQNP---SDVICSLEWESIAIVS 341 (343)
Q Consensus 306 ---------------------------------------~~~~-~~~~~i~s~~~~~~~~---~~l~~~~~~~~i~~~~ 341 (343)
..+. .+..+|+++++++.+| .+|++|++|+.|++|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 1222 3457899999886577 8999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=249.61 Aligned_cols=251 Identities=13% Similarity=0.205 Sum_probs=193.9
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLS 91 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~d 91 (343)
..|...|.+++|+| ++++|+||+.|+. +++|++.............|.+.|.+++|+ ++.+|++++.|
T Consensus 6 ~~h~~~V~~~~~s~----~g~~las~s~D~~-----v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 6 NAHNEMIHDAVMDY----YGKRMATCSSDKT-----IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CSCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCcCceEEEEECC----CCCEEEEEeCCCE-----EEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 36888999999999 8999999999975 779999643211222334689999999997 27899999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceE-EEEEcCCCccceEEEEeC
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEF-KRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~ 166 (343)
|+|++|++...+...... ...|...|.+++|+ +..+++++.|++|++||++++... ...+..|.. .|.+++|+
T Consensus 77 ~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-~v~~~~~~ 154 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWA 154 (297)
T ss_dssp TEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS-CEEEEEEC
T ss_pred CEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC-ccceEeec
Confidence 999999998543111111 23588999999997 578999999999999999875211 234455655 79999999
Q ss_pred CC--------------CEEEEEeCCCcEEEEEccccCCCC----CeeEEecccCCCCCcccCeEEEEEcCCC--CeEEEE
Q 019258 167 SP--------------TEFVTGGFGYGLQWWDLRRAGSGG----PVLQFKGNFGSQGKASGMIHSVDIHPSR--KHTCLA 226 (343)
Q Consensus 167 ~~--------------~~l~t~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~~~~s 226 (343)
|. ..|++++.|++|++||++. +. ....+.+|. .+|.+++|+|++ ..++++
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~---~~~~~~~~~~l~~H~-------~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVLESTLEGHS-------DWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEET---TTTEEEEEEEECCCS-------SCEEEEEECCCCSSSEEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC---CCceEEEEEEecCCC-------CceEEEEECCCCCCceEEEE
Confidence 83 5899999999999999987 44 233455554 789999999986 467899
Q ss_pred EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
|+.||+|++||++....+...... ....|...|++++|+|++. .|++++.||+|++|+..
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~----------~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLL------KEEKFPDVLWRASWSLSGN----------VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEES------SSSCCSSCEEEEEECSSSC----------CEEEEETTSCEEEEEEC
T ss_pred EECCCcEEEEEeCCCCCccceeee------ecccCCCcEEEEEECCCCC----------EEEEEcCCCcEEEEEEC
Confidence 999999999999874322111100 0135788999999999988 79999999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=265.92 Aligned_cols=291 Identities=13% Similarity=0.116 Sum_probs=225.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-C-CCCccCCCCCCeeEEEcc-C-CCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-L-TPHSQWTPPTRISSLSTS-H-QSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~-~~~~~~~~~~~v~~v~~~-~-~~~l~ 86 (343)
.+..+.|...|.+++|+| ++.+|++|+.|+. +++|++..... . .......|.+.|.+++|+ + +.+|+
T Consensus 60 ~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~-----v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 130 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSH----NNKIIAGALDNGS-----LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130 (416)
T ss_dssp CSCCCCCSSCEEEEEECS----SSSCEEEEESSSC-----EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEE
T ss_pred EEEEEecCCceEEEEECC----CCCeEEEEccCCe-----EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEE
Confidence 344566888999999999 8899999999865 77999965211 1 223334688999999999 5 78999
Q ss_pred EEcCCCcEEEEEccCce------eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC-
Q 019258 87 ASTLSGSLHVLSSAMQV------LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG- 156 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~------~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~- 156 (343)
+++.||.|++|++...+ ..........|...|.++.|+ +..+++++.||.|++||+++++ ....+..+.
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~ 209 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSP 209 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCC
T ss_pred EEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceEEecccc
Confidence 99999999999998554 222222234688999999998 4689999999999999999985 444444442
Q ss_pred ----ccceEEEEeCC-C-CEEEEEeCCC---cEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 157 ----LVGFNCVKWAS-P-TEFVTGGFGY---GLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 157 ----~~~v~~~~~~~-~-~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
...+.+++|+| + ..+++++.|+ .|++||++. ...++..+. .+. ..|.+++|+|.+..++++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~--~~~~~~~~~~~~~-------~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN--ANTPLQTLNQGHQ-------KGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--TTSCSBCCCSCCS-------SCEEEEEECSSCSSCEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--CCCCcEEeecCcc-------CceeEEEeCCCCCCeEEE
Confidence 23799999999 3 5899999998 999999998 234555555 454 789999999943456789
Q ss_pred EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
|+.||.|++||+++.+.... . ..|...|.+++|+|+++. .+++++.||.|++|+......
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~-~----------~~~~~~v~~~~~s~~~~~---------~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQ-F----------PARGNWCFKTKFAPEAPD---------LFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EESSSEEEEECSSSCCEEEE-E----------ECSSSCCCCEEECTTCTT---------EEEECCSSSEEEEEESCCCCC
T ss_pred EeCCCCEEEeeCCCCcccee-e----------cCCCCceEEEEECCCCCC---------EEEEEecCCcEEEEEccCCCC
Confidence 99999999999998654433 3 468899999999999855 899999999999999653221
Q ss_pred cccc-------------------------------------cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 ELLA-------------------------------------EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 ~~~~-------------------------------------~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.... ...++.+++|+| +|++|++|++++.|++|+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITN 411 (416)
T ss_dssp SSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBC
T ss_pred CcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEE
Confidence 1100 134678999999 679999999999999986
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=260.27 Aligned_cols=244 Identities=14% Similarity=0.059 Sum_probs=190.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCCccCCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL--TPHSQWTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
.|...|.+++|+| ++. +++++.|+. |++|++...... .......|.+.|++++|+ ++.+|++++.||
T Consensus 92 ~~~~~V~~~~~s~----d~~-~l~~s~dg~-----v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg 161 (357)
T 4g56_B 92 QTEAGVTDVAWVS----EKG-ILVASDSGA-----VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF 161 (357)
T ss_dssp ECSSCEEEEEEET----TTE-EEEEETTSC-----EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCCEEEEEEcC----CCC-EEEEECCCE-----EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 4667899999999 554 567777864 779999653322 123345788999999999 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.|++||+...+.+... ..|...|++++|+ + ..+++++.||+|++||+++++.............+.+++|+|
T Consensus 162 ~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp CEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS
T ss_pred eEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc
Confidence 9999999876655443 3699999999998 3 578999999999999998875333332222233699999998
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
...|++++.|+.|++||++. ++++..+..+. ..|++++|+|++..+|++|+.||+|++||+++++. ...
T Consensus 239 ~~~la~g~~d~~i~~wd~~~---~~~~~~~~~~~-------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~ 307 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKN---PDSAQTSAVHS-------QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV-FRD 307 (357)
T ss_dssp TTEEEEEESSSCEEEEESSC---GGGCEEECCCS-------SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE-EEE
T ss_pred cceEEEeecccceeEEECCC---CcEeEEEeccc-------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE-eEE
Confidence 56788999999999999998 77777787665 78999999999877889999999999999987543 332
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|.+.|++|+|+|.+.. .|++||.||+|++|+...
T Consensus 308 -----------~~H~~~V~~vafsP~d~~---------~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 308 -----------LSHRDFVTGVAWSPLDHS---------KFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp -----------CCCSSCEEEEEECSSSTT---------EEEEEETTSCEEEEECC-
T ss_pred -----------CCCCCCEEEEEEeCCCCC---------EEEEEcCCCeEEEEECCC
Confidence 359999999999995454 899999999999999753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=263.55 Aligned_cols=300 Identities=13% Similarity=0.109 Sum_probs=207.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
+|...|++|+|+| .++.+||+|+.|+. |++|++........+....|.+.|++|+|+ ++.+|++++.||+
T Consensus 117 ~~~~~V~~l~~~P---~~~~~lasGs~dg~-----i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 117 PFDRRATSLAWHP---THPSTVAVGSKGGD-----IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp ECSSCEEEEEECS---SCTTCEEEEETTSC-----EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCEEEEEEeC---CCCCEEEEEeCCCE-----EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 4677899999999 46789999999976 779999654433334456799999999998 6789999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PT 169 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 169 (343)
|++||+..... ........+...+.+++|+ +..+++|+.||.|++||++.. .+ ..+..|.. .|.+++|+| ..
T Consensus 189 v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~-~~~~~h~~-~v~~v~~~p~~~~ 264 (435)
T 4e54_B 189 TRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL-WNLRMHKK-KVTHVALNPCCDW 264 (435)
T ss_dssp EEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC-CCSBCCSS-CEEEEEECTTCSS
T ss_pred EEEeeccCCce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee-EEEecccc-eEEeeeecCCCce
Confidence 99999975432 2222222345567888888 889999999999999999764 23 33455655 799999999 45
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.+++++.|+.|++||++. .+....+....++. .+|++++|+|++. .|++|+.||.|++||+++...+..+..
T Consensus 265 ~~~s~s~d~~v~iwd~~~---~~~~~~~~~~~~h~----~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQ---VRGKASFLYSLPHR----HPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp EEEEEETTSBCCEEETTT---CCSSSCCSBCCBCS----SCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred EEEEecCcceeeEEeccc---ccccceEEEeeecc----ccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEec
Confidence 788999999999999988 44333332221112 7899999999986 467999999999999998776665542
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCC--cCCCCCccceEEEecCCeEEEEecCCCc--cccc-cccccccee-eecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSS--NISSSRVLPAMFCSEDGILAVVEQGEEP--FELL-AEPCAINSF-DIDPQ 323 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~--~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~~~-~~~~~i~s~-~~~~~ 323 (343)
.... ......+....|+|.+... +...+....++++..++.|++|+..... ..+. .+...|.++ +|+|
T Consensus 337 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp- 410 (435)
T 4e54_B 337 HPHR-----HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP- 410 (435)
T ss_dssp CCCC-----CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-
T ss_pred cccc-----ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-
Confidence 1100 0011123344566554420 0000000023333355679999875432 2333 234678887 6898
Q ss_pred CCCeeEEccCCceEEEEeC
Q 019258 324 NPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~~~ 342 (343)
+|.+|++|+ ++.|++|+.
T Consensus 411 dg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp TSSCEEEEC-SSEEEECCC
T ss_pred CCCEEEEEc-CCcEEEEEC
Confidence 678888886 668999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=269.30 Aligned_cols=291 Identities=13% Similarity=0.117 Sum_probs=222.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-----CccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP-----HSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~-----~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++........ +....|.+.|.+++|+ ++.+|++++
T Consensus 188 ~H~~~V~~v~fsp----dg~~las~s~D~~-----i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 188 EHTKFVHSVRYNP----DGSLFASTGGDGT-----IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred cccCceEEEEECC----CCCEEEEEECCCc-----EEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 4778999999999 8999999999975 77999854322111 1123689999999999 889999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.|++|++||+...+.+........+...+..+.|.+..+++++.|+.+++||...+. +...+.+|.. .|.+++|+| +
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~-~v~~l~~spdg 336 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-IDQVRYGHNK-AITALSSSADG 336 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSS-CEEEEEECTTS
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCC-CEEEEEEeCCC
Confidence 999999999986665544433334556677888889999999999999999998874 5666667766 899999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEE-eccc-----------------------------C----------------
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNF-----------------------------G---------------- 202 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~-----------------------------~---------------- 202 (343)
..|++++.|++|++||++. +.....+ ..|. .
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~---~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDIST---GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp SEEEEEETTSCEEEEETTT---CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CEEEEEeCCCcEEEEECCC---CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 8999999999999999876 2211110 0000 0
Q ss_pred -------CCC----------------------CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 203 -------SQG----------------------KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 203 -------~~~----------------------~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
..+ .+...+.+++|+|+++ ++++|+.||+|++||++.........
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~----- 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT----- 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-----
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-----
Confidence 000 0113478999999986 56899999999999997643221111
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Cccc--ccc-cccccceeeecCCCCCee
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFE--LLA-EPCAINSFDIDPQNPSDV 328 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~--~~~-~~~~i~s~~~~~~~~~~l 328 (343)
..|...|.+|+|+|++. +|++++.|++|++|+... +... +.. +...|++++|+| +|++|
T Consensus 488 -----~~h~~~v~~v~fspdg~----------~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~l 551 (611)
T 1nr0_A 488 -----IVHPAEITSVAFSNNGA----------FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRL 551 (611)
T ss_dssp -----EECSSCEEEEEECTTSS----------EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEE
T ss_pred -----cCCCCceEEEEECCCCC----------EEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEE
Confidence 35889999999999988 799999999999999753 2211 223 457899999999 67999
Q ss_pred EEccCCceEEEEeC
Q 019258 329 ICSLEWESIAIVSR 342 (343)
Q Consensus 329 ~~~~~~~~i~~~~~ 342 (343)
++|+.|+.|++|+-
T Consensus 552 asgs~D~~v~lW~~ 565 (611)
T 1nr0_A 552 ATGSLDNSVIVWNM 565 (611)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCcEEEEEC
Confidence 99999999999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=272.85 Aligned_cols=279 Identities=14% Similarity=0.217 Sum_probs=219.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CC-CccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL--TP-HSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~-~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|.+.|.+|+|+| .++++|+|||.|+. |++|++...... .+ .....|...|.+++|+ ++.+|++|+.|
T Consensus 380 ~H~~~V~~v~~~~---~~~~~l~s~s~D~~-----i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 380 AHTDMVTAIATPI---DNADIIVSASRDKS-----IILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp CCSSCEEEEECCT---TCCSEEEEEETTSE-----EEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCceeEEEEecC---CCCCEEEEEeCCCc-----EEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 5889999999999 45689999999975 779999653221 11 2234688999999999 88999999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc---CCCccceEEEEeC
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD---GNGLVGFNCVKWA 166 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~ 166 (343)
|.|+|||+......... ..|.+.|.+++|+ +..+++++.|++|++||+.... ...... .|.. .|.+++|+
T Consensus 452 g~v~vwd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~-~v~~~~~~ 526 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRD-WVSCVRFS 526 (694)
T ss_dssp SEEEEEETTTTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSS-CEEEEEEC
T ss_pred CcEEEEECCCCcceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCC-cEEEEEEe
Confidence 99999999866544333 2699999999998 8899999999999999987652 333322 3443 79999999
Q ss_pred C-C--CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce
Q 019258 167 S-P--TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 167 ~-~--~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
| . ..+++++.|++|++||++. .+....+.+|. +.|.+++|+|++. ++++|+.||+|++||++++..
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~---~~~~~~~~~h~-------~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSN---CKLRSTLAGHT-------GYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEE
T ss_pred CCCCcceEEEEeCCCeEEEEECCC---CcEEEEEcCCC-------CCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce
Confidence 8 3 5799999999999999988 67676777665 7899999999976 568999999999999998654
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc--ccccc----------
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF--ELLAE---------- 311 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~--~~~~~---------- 311 (343)
...+. +...|.+++|+|++. +++++.|+.|++|+...... .+..+
T Consensus 596 ~~~~~------------~~~~v~~~~~sp~~~-----------~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 596 LYSLE------------ANSVIHALCFSPNRY-----------WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EECCB------------CSSCEEEEEECSSSS-----------EEEEEETTEEEEEETTTTEEEEEECCCCC--------
T ss_pred EEEec------------CCCcEEEEEEcCCCc-----------EEEEEcCCCEEEEECCCCCChhhhccccccccccccc
Confidence 43322 456799999999864 45666678899999754321 11100
Q ss_pred ---------ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 312 ---------PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 312 ---------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
...+.+++|+| +|.+|++|+.|+.|++|+-
T Consensus 653 ~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred cccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEec
Confidence 01368899999 6799999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=248.65 Aligned_cols=238 Identities=14% Similarity=0.184 Sum_probs=199.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++.++++++.|+. |++|++...... .....+...+.+++|+ ++.+|++++.||.|
T Consensus 78 gh~~~v~~~~~~~----~~~~l~s~s~D~~-----i~lWd~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v 146 (321)
T 3ow8_A 78 GHQLGVVSVDISH----TLPIAASSSLDAH-----IRLWDLENGKQI--KSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146 (321)
T ss_dssp CCSSCEEEEEECS----SSSEEEEEETTSE-----EEEEETTTTEEE--EEEECCTTCCCCEEECTTSSEEEEECTTSEE
T ss_pred cCCCCEEEEEECC----CCCEEEEEeCCCc-----EEEEECCCCCEE--EEEeCCCccEEEEEECCCCCEEEEEcCCCcE
Confidence 4778899999999 7889999999975 779999653222 1223466789999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|++...+...... .|...|.+++|+ ++.+++++.||.|++||+++++ ....+..|.. .|.+++|+| +..|
T Consensus 147 ~i~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~spd~~~l 221 (321)
T 3ow8_A 147 NIFGVESGKKEYSLD---TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAM-PIRSLTFSPDSQLL 221 (321)
T ss_dssp EEEETTTCSEEEEEE---CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CCCEEEECTTSCEE
T ss_pred EEEEcCCCceeEEec---CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCC-ceeEEEEcCCCCEE
Confidence 999998655443332 477789999998 8999999999999999999984 5666666665 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|++|++||++. ...+..+.+|. ..|.+++|+|++. .+++|+.||+|++||+++......+
T Consensus 222 ~s~s~dg~i~iwd~~~---~~~~~~~~~h~-------~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~---- 286 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQH---ANLAGTLSGHA-------SWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTF---- 286 (321)
T ss_dssp EEECTTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE----
T ss_pred EEEcCCCeEEEEECCC---cceeEEEcCCC-------CceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEE----
Confidence 9999999999999988 67777777665 7899999999986 5689999999999999986544443
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
..|...|++++|+|++. .|++++.||+|++|+.
T Consensus 287 -------~~h~~~v~~v~~s~~g~----------~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 287 -------FDHQDQVWGVKYNGNGS----------KIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -------CCCSSCEEEEEECTTSS----------EEEEEETTCCEEEEEC
T ss_pred -------cCCCCcEEEEEECCCCC----------EEEEEeCCCeEEEEeC
Confidence 46899999999999987 7999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=257.22 Aligned_cols=237 Identities=15% Similarity=0.155 Sum_probs=199.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|...|.+++|+| ++++|++|+.|+. |++|++... .++. ...|...|.+++|+ ++++|++|+.|++
T Consensus 148 ~h~~~V~~v~~~~----~~~~l~sgs~D~~-----i~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~ 215 (410)
T 1vyh_C 148 GHTDSVQDISFDH----SGKLLASCSADMT-----IKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215 (410)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSC-----CCEEETTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ccCCcEEEEEEcC----CCCEEEEEeCCCe-----EEEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 4778999999999 8899999999976 569999542 2222 24688899999999 8889999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC----
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS---- 167 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~---- 167 (343)
|++||+.....+... ..|...|.++.++ +..+++++.|++|++||+.++. ....+..|.. .|.+++|+|
T Consensus 216 i~~wd~~~~~~~~~~---~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 216 IKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRH-VVECISWAPESSY 290 (410)
T ss_dssp EEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSS-CEEEEEECCSCGG
T ss_pred EEEEECCCCcEEEEE---eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCc-eEEEEEEcCcccc
Confidence 999999866555433 2688999999998 8899999999999999999884 5555566665 799999988
Q ss_pred -----------------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 168 -----------------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 168 -----------------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
+..+++|+.|++|++||++. +.++..+.+|. ..|.+++|+|++.. +++|+.|
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~---~~~~~~~~~h~-------~~v~~v~~~~~g~~-l~s~s~D 359 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHD-------NWVRGVLFHSGGKF-ILSCADD 359 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTT---TEEEEEEECCS-------SCEEEEEECSSSSC-EEEEETT
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC---CceEEEEECCC-------CcEEEEEEcCCCCE-EEEEeCC
Confidence 34799999999999999998 77788887765 78999999999875 5799999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
|+|++||+++.+....+ .+|...|++++|+|+++ .|+++|.||+|++|+.
T Consensus 360 ~~i~vwd~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~----------~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 360 KTLRVWDYKNKRCMKTL-----------NAHEHFVTSLDFHKTAP----------YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TEEEEECCTTSCCCEEE-----------ECCSSCEEEEEECSSSS----------CEEEEETTSEEEEEC-
T ss_pred CeEEEEECCCCceEEEE-----------cCCCCcEEEEEEcCCCC----------EEEEEeCCCcEEEEeC
Confidence 99999999875544433 46899999999999988 7999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=275.01 Aligned_cols=300 Identities=10% Similarity=-0.001 Sum_probs=213.9
Q ss_pred ccccCCcccceeeEEecCCCCCC-----CCeEEEEeecCCC--------------CCCceeeeeCCCCCCC-CCCccC-C
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPL-----SKLAVLAIYDTDA--------------DSPSLETHSISLPASL-TPHSQW-T 69 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~-----~~~l~t~s~D~~~--------------~~~~l~~w~~~~~~~~-~~~~~~-~ 69 (343)
....+.++..|.+|+|+|..... ..+||+|+.+... ..-+|++|++...... .....+ .
T Consensus 126 ~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~ 205 (524)
T 2j04_B 126 RGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH 205 (524)
T ss_dssp CEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEE
T ss_pred ceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEe
Confidence 34455567899999999942111 1577776644210 0114789998543211 001112 3
Q ss_pred CCCCeeEEEcc-C------CCeEEEEcCCCcEEEEEccCceee-----ee---eccCCccccCeEEEEec-CCEEEEEeC
Q 019258 70 PPTRISSLSTS-H------QSLVAASTLSGSLHVLSSAMQVLL-----SV---DENSGFHVGPISGVDLT-GSECVSVGE 133 (343)
Q Consensus 70 ~~~~v~~v~~~-~------~~~l~~~s~dg~v~v~~~~~~~~~-----~~---~~~~~~h~~~v~~~~~~-~~~~~s~s~ 133 (343)
|.+.|.+++|+ + +.+|++++.||+|++|++...... .. .....+|...|++++|+ +..|++|+.
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~ 285 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence 56889999999 3 368999999999999999743211 00 01223688999999998 779999999
Q ss_pred CCcEEEEECCCCceEEEEEcCCCccceEEE--EeCC-C-CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 134 DGRVNLVSVIGGGEFKRVYDGNGLVGFNCV--KWAS-P-TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 134 dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~--~~~~-~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
||+|++||++++..+...+..|.. .|.++ .|.+ + ..|++++.|++|++||++. .+++..+.++.. . .
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~---~~~~~~~~~~~~-~----~ 356 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD---IATTKTTVSRFR-G----S 356 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEEECGGG---HHHHCEEEEECS-C----C
T ss_pred CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC---CCcccccccccc-c----C
Confidence 999999999876444444556666 79999 4566 4 6899999999999999998 666666655431 0 2
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
.|.+++|+|++.. +++++.|++|++||++.......+. +|.+.|++|+|+|+++ .|++
T Consensus 357 ~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~-----------gH~~~V~sva~Sp~g~----------~l~S 414 (524)
T 2j04_B 357 NLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLV-----------SRETTITAIGVSRLHP----------MVLA 414 (524)
T ss_dssp SCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEE-----------ECSSCEEEEECCSSCC----------BCEE
T ss_pred cccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeee-----------cCCCceEEEEeCCCCC----------eEEE
Confidence 4889999998765 6789999999999999866555443 5999999999999988 7999
Q ss_pred EecCCeEEEEecCCCcc----------------------------------------------cccccccccceeeecCC
Q 019258 290 CSEDGILAVVEQGEEPF----------------------------------------------ELLAEPCAINSFDIDPQ 323 (343)
Q Consensus 290 ~s~dg~i~~~~~~~~~~----------------------------------------------~~~~~~~~i~s~~~~~~ 323 (343)
||.||+|++|+...... .+..+..+|++++|+|+
T Consensus 415 gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 415 GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCS
T ss_pred EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999999987321100 00011257999999995
Q ss_pred C--CCeeEEccCCceEEEEe
Q 019258 324 N--PSDVICSLEWESIAIVS 341 (343)
Q Consensus 324 ~--~~~l~~~~~~~~i~~~~ 341 (343)
. +..|++|+.++.|++|+
T Consensus 495 ~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 495 SAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp TTTTTEEEEECTTSEEEEEE
T ss_pred CCccHHHHhhccCceEEEEE
Confidence 3 45899999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=248.33 Aligned_cols=241 Identities=15% Similarity=0.094 Sum_probs=196.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CC-CccCCCCCCeeEEEccCCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TP-HSQWTPPTRISSLSTSHQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~-~~~~~~~~~v~~v~~~~~~~l~~~s~dg~ 93 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++...... .. .....|.+.|.++.|+++..+++++.|+.
T Consensus 95 ~~~~~v~~~~~s~----~~~~l~s~~~d~~-----v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~ 165 (340)
T 1got_B 95 LRSSWVMTCAYAP----SGNYVACGGLDNI-----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165 (340)
T ss_dssp CSSSCEEEEEECT----TSSEEEEEETTCE-----EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSC
T ss_pred cCCccEEEEEECC----CCCEEEEEeCCCe-----EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCc
Confidence 3667899999999 8899999999965 679999653211 11 22346889999999996667999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|++||+...+.+... .+|.+.|.++.|+ +..+++++.|++|++||++++. ....+..|.. .|.+++|+| ++.
T Consensus 166 i~~wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~-~v~~v~~~p~~~~ 240 (340)
T 1got_B 166 CALWDIETGQQTTTF---TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHES-DINAICFFPNGNA 240 (340)
T ss_dssp EEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSS-CEEEEEECTTSSE
T ss_pred EEEEECCCCcEEEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcC-CEEEEEEcCCCCE
Confidence 999999876655433 3699999999998 7899999999999999999884 5566666666 899999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
|++++.|++|++||++. .+++..+.. .... ..|.+++|+|++. ++++|+.||.|++||+++..... .+
T Consensus 241 l~s~s~d~~v~iwd~~~---~~~~~~~~~-~~~~----~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~-~~-- 308 (340)
T 1got_B 241 FATGSDDATCRLFDLRA---DQELMTYSH-DNII----CGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAG-VL-- 308 (340)
T ss_dssp EEEEETTSCEEEEETTT---TEEEEEECC-TTCC----SCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-EE--
T ss_pred EEEEcCCCcEEEEECCC---CcEEEEEcc-CCcc----cceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEee-Ee--
Confidence 99999999999999988 555555432 1111 4699999999986 56899999999999998755433 33
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+|.+.|.+++|+|++. .|+++|.||+|++|+
T Consensus 309 --------~~h~~~v~~~~~s~dg~----------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 --------AGHDNRVSCLGVTDDGM----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp --------ECCSSCEEEEEECTTSS----------CEEEEETTSCEEEEC
T ss_pred --------ecCCCcEEEEEEcCCCC----------EEEEEcCCccEEecC
Confidence 57999999999999987 799999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=262.80 Aligned_cols=272 Identities=14% Similarity=0.166 Sum_probs=222.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++++.|+. +++|++.... ......|...|.+++|+ ++..|++++.||.|
T Consensus 301 ~h~~~v~~~~~~~----~~~~l~t~~~d~~-----i~~w~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 301 GHSSSVWGVAFSP----DGQTIASASDDKT-----VKLWNRNGQH---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCeEEEEECC----CCCEEEEEeCCCe-----EEEEeCCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 4778899999999 8899999999865 7799985432 23334678899999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|+... +.+... ..|...|.+++|+ ++.+++++.|+.|++||.... ....+..|.. .|.+++|+| +..+
T Consensus 369 ~~~~~~~-~~~~~~---~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~--~~~~~~~~~~-~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 369 KLWNRNG-QLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSS-SVWGVAFSPDDQTI 441 (577)
T ss_dssp EEEETTC-CEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC--EEEEEECCSS-CEEEEEECTTSSEE
T ss_pred EEEcCCC-CEEEEe---cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC--EEEEecCCCC-CeEEEEECCCCCEE
Confidence 9999753 223222 2588999999998 889999999999999996543 4444455665 799999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|++|++||.. ++.+..+..+. ..|.+++|+|++. ++++++.|+.|++||.. ++.... +
T Consensus 442 ~~~~~d~~v~~w~~~----~~~~~~~~~~~-------~~v~~~~~spd~~-~las~~~d~~i~iw~~~-~~~~~~-~--- 504 (577)
T 2ymu_A 442 ASASDDKTVKLWNRN----GQLLQTLTGHS-------SSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQT-L--- 504 (577)
T ss_dssp EEEETTSEEEEEETT----SCEEEEEECCS-------SCEEEEEECTTSC-EEEEEETTSEEEEEETT-SCEEEE-E---
T ss_pred EEEcCCCEEEEEECC----CCEEEEEcCCC-------CCEEEEEEcCCCC-EEEEEeCCCEEEEEcCC-CCEEEE-E---
Confidence 999999999999963 46667777665 7899999999976 56899999999999964 343333 3
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecCCCCCeeEE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
.+|...|.+|+|+|++. +|++++.||.|++|+...+. ..+..+..+|.+++|+| ++++|++
T Consensus 505 -------~~h~~~v~~l~~s~dg~----------~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~-dg~~l~s 566 (577)
T 2ymu_A 505 -------TGHSSSVRGVAFSPDGQ----------TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIAS 566 (577)
T ss_dssp -------ECCSSCEEEEEECTTSS----------CEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred -------eCCCCCEEEEEEcCCCC----------EEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC-CCCEEEE
Confidence 56999999999999987 79999999999999976443 34444567899999999 6799999
Q ss_pred ccCCceEEEEe
Q 019258 331 SLEWESIAIVS 341 (343)
Q Consensus 331 ~~~~~~i~~~~ 341 (343)
++.|+.|++|+
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 99999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=266.79 Aligned_cols=294 Identities=10% Similarity=0.082 Sum_probs=221.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC---
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS--- 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d--- 91 (343)
.|...|.+++|+| ++++||+|+.|+. +++|++.............|.+.|.+++|+ ++.+|++++.+
T Consensus 57 ~h~~~v~~~~~sp----dg~~lasg~~d~~-----v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 57 EHSHQTTVAKTSP----SGYYCASGDVHGN-----VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSE-----EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred CCCCceEEEEECC----CCcEEEEEeCCCC-----EEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence 5888999999999 8999999999975 779998532222112234678999999999 88888888765
Q ss_pred -CcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 92 -GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 92 -g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
+.|++|+... .. ....+|.+.|++++|+ +. .+++++.|++|++||..+.+ ....+..|.. .|.+++|+|
T Consensus 128 ~~~v~~wd~~~--~~---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~-~V~~v~fsp 200 (611)
T 1nr0_A 128 FGHVFLFDTGT--SN---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTK-FVHSVRYNP 200 (611)
T ss_dssp SEEEEETTTCC--BC---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSS-CEEEEEECT
T ss_pred eeEEEEeeCCC--Cc---ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccC-ceEEEEECC
Confidence 4788887542 22 1234799999999999 44 69999999999999998874 5666677776 899999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
+..|++++.|++|++||++. ++++..+.........|.+.|.+++|+|++. ++++|+.|++|++||+++++....
T Consensus 201 dg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~ 276 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKT 276 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCcEEEEECCC---CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeee
Confidence 88999999999999999988 6666555310000001227899999999986 568999999999999987544332
Q ss_pred eecCCC--------------------------------CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 247 LSGVGT--------------------------------GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 247 ~~~~~~--------------------------------~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
+..... .......+|...|++++|+|++. .|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~----------~l~s~s~D~ 346 (611)
T 1nr0_A 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK----------TLFSADAEG 346 (611)
T ss_dssp EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----------EEEEEETTS
T ss_pred ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC----------EEEEEeCCC
Confidence 211000 00012257999999999999987 799999999
Q ss_pred eEEEEecCCCc-cccc--ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEP-FELL--AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~-~~~~--~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|++|+..... ...+ .+...|.++++++ + ..+++++.++.+++|+
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~-~-~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTS-K-GDLFTVSWDDHLKVVP 394 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECT-T-SCEEEEETTTEEEEEC
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECC-C-CcEEEEEcCCceEEee
Confidence 99999976432 2222 2356799999997 3 5788888899999986
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=242.81 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=190.2
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|.+.|.+++|+ ++.+|++|+.|++|+||++...... ......+|.++|.+++|+ +..|++++.|++|++||+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 3688999999999 8899999999999999999732111 112224799999999995 679999999999999999
Q ss_pred CCCc-eEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCC-CeeEEecccCCCCCcccCeEEEEEc
Q 019258 143 IGGG-EFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGG-PVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
+++. .....+..|.. .|.+++|+| +..|++++.|++|++||++. ... ....+..|. ..|.+++|+
T Consensus 85 ~~~~~~~~~~~~~h~~-~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~--~~~~~~~~~~~h~-------~~v~~~~~~ 154 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE--NGTTSPIIIDAHA-------IGVNSASWA 154 (297)
T ss_dssp SSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEEBCS--SSCBCCEEEECCS-------SCEEEEEEC
T ss_pred CCCceEEEEEeecCCC-ceeEEEeCcCCCCcEEEEEECCCcEEEEEecC--CCceeeeeeeccc-------CccceEeec
Confidence 8753 12334445555 799999998 46899999999999999987 211 133455554 779999999
Q ss_pred CCC------------CeEEEEEecCCcEEEEEccCCcee---eeeecCCCCcccccCCccccEEEEEEeecC--CCCcCC
Q 019258 218 PSR------------KHTCLAGGSSGTVFAWDLRWQQQS---IVLSGVGTGEAVTHSLSESEVWEVQYDCHT--KSSNIS 280 (343)
Q Consensus 218 p~~------------~~~~~sg~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~~~~~~ 280 (343)
|+. ..+|++|+.||+|++||++..... ...+ .+|...|.+|+|+|++ ..
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l----------~~H~~~V~~v~~sp~~~~~~---- 220 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL----------EGHSDWVRDVAWSPTVLLRS---- 220 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE----------CCCSSCEEEEEECCCCSSSE----
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe----------cCCCCceEEEEECCCCCCce----
Confidence 973 247899999999999999875432 2233 6799999999999985 33
Q ss_pred CCCccceEEEecCCeEEEEecCCCc----cccc---ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEEP----FELL---AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~~----~~~~---~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+++|.||+|++|+..... ..++ .....|.+++|+| ++++|++++.|+.|++|+
T Consensus 221 -----~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 221 -----YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp -----EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEE
T ss_pred -----EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 79999999999999875421 1222 2256799999999 679999999999999997
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=250.52 Aligned_cols=279 Identities=17% Similarity=0.207 Sum_probs=219.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
...+.|+|++ +++|++|. |+. |++|++........+....|...|++|+|+ ++.+|++|+.||.|++|
T Consensus 106 ~y~~~l~wS~-----~n~lAvgl-d~t-----V~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 106 YYLNLVDWSS-----GNVLAVAL-DNS-----VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174 (420)
T ss_dssp TTCBCEEECT-----TSEEEEEE-TTE-----EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccceeEEECC-----CCEEEEEe-CCE-----EEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEE
Confidence 3577899998 34777664 754 779999654333333334677889999999 88999999999999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF 176 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~ 176 (343)
++...+.+... ..|...+.++.+++..+++++.|+.+++||..........+..|.. .+..+.+.+ +..+++++.
T Consensus 175 d~~~~~~~~~~---~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 175 DVQQQKRLRNM---TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp ETTTTEEEEEE---CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEET
T ss_pred EcCCCcEEEEE---eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc-ceeeeeecCCCCeeeeeec
Confidence 99876655443 3699999999999999999999999999999876556666666766 799999999 889999999
Q ss_pred CCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--ecCCcEEEEEccCCceeeeeecCCCC
Q 019258 177 GYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--GSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 177 d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
|+.+++||.+.+... ..+.....+. +.|.+++|+|.+..+++++ +.|++|++||++++.....+.
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~-------~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----- 318 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----- 318 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCS-------SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----
T ss_pred cccceEEeeccccccceeeeeecccC-------CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----
Confidence 999999999871111 1233343333 7899999999988887764 579999999999876555544
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe--cCCeEEEEecCCC--cccccccccccceeeecCCCCCeeE
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS--EDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s--~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
+...+..+.|+|++. .+++++ .||.|++|+.... ..++..+..+|.+++++| +|.+|+
T Consensus 319 -------~~~~v~~~~~~~~~~----------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~ 380 (420)
T 4gga_A 319 -------AHSQVCSILWSPHYK----------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVA 380 (420)
T ss_dssp -------CSSCEEEEEEETTTT----------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEE
T ss_pred -------cccceeeeeecCCCC----------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 456799999999987 455544 7999999997532 344445567999999999 679999
Q ss_pred EccCCceEEEEeC
Q 019258 330 CSLEWESIAIVSR 342 (343)
Q Consensus 330 ~~~~~~~i~~~~~ 342 (343)
+|+.|+.|++|+-
T Consensus 381 S~s~D~tvriWdv 393 (420)
T 4gga_A 381 SAAADETLRLWRC 393 (420)
T ss_dssp EEETTTEEEEECC
T ss_pred EEecCCeEEEEEC
Confidence 9999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=253.17 Aligned_cols=257 Identities=15% Similarity=0.139 Sum_probs=202.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC----CC-CCCccCCCCCCeeEEEcc--CCCeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA----SL-TPHSQWTPPTRISSLSTS--HQSLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~----~~-~~~~~~~~~~~v~~v~~~--~~~~l~~~ 88 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++.... .. .......|.+.|.++.|. .+..|++|
T Consensus 106 ~h~~~v~~~~~s~----~g~~las~~~d~~-----v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~ 176 (380)
T 3iz6_a 106 LHCPWVMECAFAP----NGQSVACGGLDSA-----CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176 (380)
T ss_dssp CCCTTCCCCEECT----TSSEEEECCSSSC-----CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred cCCCCEEEEEECC----CCCEEEEeeCCCc-----EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE
Confidence 3667799999999 8999999999975 5699985421 11 112334688899999998 45679999
Q ss_pred cCCCcEEEEEccCceeeeee--ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 89 TLSGSLHVLSSAMQVLLSVD--ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~--~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
+.|++|++||+...+.+... ....+|...|.++.++ ++.|++|+.|++|++||++........+..|.. .|.++
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v 255 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-DINSV 255 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-CCCEE
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-CeEEE
Confidence 99999999999876655443 2234699999999996 789999999999999999854345666667766 89999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+|+| +..|++++.|++|++||++. ++++..+..+......+...+.+++|+|++. ++++|+.||.|++||+...+
T Consensus 256 ~~~p~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDGTCRLFDMRT---GHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EECTTSSEEEEECSSSCEEEEETTT---TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC
T ss_pred EEecCCCeEEEEcCCCeEEEEECCC---CcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc
Confidence 9999 88999999999999999998 6666666543321111224589999999986 56789999999999998766
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
....+.... .+|.+.|++++|+|++. .|++||.||+|++|+...
T Consensus 332 ~~~~~~~~~-------~~h~~~v~~l~~s~dg~----------~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 332 MVLNLGTLQ-------NSHEGRISCLGLSSDGS----------ALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEECCSC-------SSCCCCCCEEEECSSSS----------EEEEECTTSCEEEEECCS
T ss_pred eEEEEeccc-------CCCCCceEEEEECCCCC----------EEEEeeCCCCEEEEecCC
Confidence 554443211 56999999999999988 799999999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=251.07 Aligned_cols=273 Identities=14% Similarity=0.161 Sum_probs=219.7
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEc
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSS 99 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~ 99 (343)
+..+.|++ ..+++++.|+. |++|++...... ......|.+.|.+++|+ ++.+|++|+.||.|++|++
T Consensus 96 ~~~~~~s~------~~l~~~~~d~~-----v~lw~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSN------LNVVAVALERN-----VYVWNADSGSVS-ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECT------TSEEEEEETTE-----EEEEETTTCCEE-EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecC------CCEEEEECCCe-----EEEeeCCCCcEe-EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 45577776 23778888865 779999653322 23334578899999999 8899999999999999999
Q ss_pred cCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC
Q 019258 100 AMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY 178 (343)
Q Consensus 100 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~ 178 (343)
...+.+.... .|...|.++.|+++.+++++.||.|++||++........+..|.. .|.+++|+| +..|++++.|+
T Consensus 164 ~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 164 ESQTKLRTMA---GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-EVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp TTCCEEEEEC---CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred cCCeEEEEec---CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-CeeEEEEcCCCCEEEEEeCCC
Confidence 8665544432 699999999999999999999999999999854445556666665 899999999 88999999999
Q ss_pred cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 179 GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
.|++||++. ..++..+..+. ..|.+++|+|++..++++|+ .||.|++||+++......+.
T Consensus 240 ~v~iwd~~~---~~~~~~~~~~~-------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-------- 301 (401)
T 4aez_A 240 VVQIWDARS---SIPKFTKTNHN-------AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-------- 301 (401)
T ss_dssp CEEEEETTC---SSEEEEECCCS-------SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--------
T ss_pred eEEEccCCC---CCccEEecCCc-------ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--------
Confidence 999999998 67777776655 78999999999888888876 79999999999865544433
Q ss_pred ccCCccccEEEEEEeecCCCCcCCCCCccceEEE--ecCCeEEEEecCCCcc----cccccccccceeeecCCCCCeeEE
Q 019258 257 THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC--SEDGILAVVEQGEEPF----ELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 257 ~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~--s~dg~i~~~~~~~~~~----~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
+...|.+++|+|++. .++++ +.||.|++|+...... ++..+...|.+++++| ++.+|++
T Consensus 302 ----~~~~v~~~~~s~~~~----------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s 366 (401)
T 4aez_A 302 ----AGSQVTSLIWSPHSK----------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILST 366 (401)
T ss_dssp ----CSSCEEEEEECSSSS----------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEE
T ss_pred ----CCCcEEEEEECCCCC----------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEE
Confidence 567899999999988 67774 4899999999754321 2233457899999999 6799999
Q ss_pred ccCCceEEEEeC
Q 019258 331 SLEWESIAIVSR 342 (343)
Q Consensus 331 ~~~~~~i~~~~~ 342 (343)
++.|+.|++|+-
T Consensus 367 ~~~dg~i~iw~~ 378 (401)
T 4aez_A 367 AASDENLKFWRV 378 (401)
T ss_dssp ECTTSEEEEEEC
T ss_pred EeCCCcEEEEEC
Confidence 999999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=247.09 Aligned_cols=259 Identities=12% Similarity=0.062 Sum_probs=196.0
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|...|.+++|+| ++++|++|+.|+. +++|++.............|.+.|.+++|+ ++++|++++.|+.
T Consensus 58 ~~h~~~v~~~~~sp----~g~~l~s~s~D~~-----v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~ 128 (345)
T 3fm0_A 58 EGHQRTVRKVAWSP----CGNYLASASFDAT-----TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128 (345)
T ss_dssp SSCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccCCcEEEEEECC----CCCEEEEEECCCc-----EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe
Confidence 35788999999999 8999999999975 679998543211112234688999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC-CC
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
|++|++..............|...|.++.|+ +..+++++.|++|++||.+++.. ....+..|.. .|.+++|+| +.
T Consensus 129 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~-~v~~l~~sp~g~ 207 (345)
T 3fm0_A 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES-TVWSLAFDPSGQ 207 (345)
T ss_dssp EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEECTTSS
T ss_pred EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC-ceEEEEECCCCC
Confidence 9999998554433333334699999999998 88999999999999999987642 3345566666 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCC------------eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGP------------VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
.|++++.|++|++||.+....... +..+.+. +...|.+++|+|++.. +++++.|+.|++||
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF------HSRTIYDIAWCQLTGA-LATACGDDAIRVFQ 280 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS------CSSCEEEEEECTTTCC-EEEEETTSCEEEEE
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC------CCCcEEEEEEecCCCE-EEEEeCCCeEEEEE
Confidence 999999999999999865111111 1112221 2277999999998764 68999999999999
Q ss_pred ccCCcee---eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 238 LRWQQQS---IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 238 ~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
.+....+ ..... .....+|...|++|+|+|+++. .|++||.||+|++|+...+
T Consensus 281 ~~~~~~~~~~~~~~~-----~~~~~~h~~~V~~v~~~p~~~~---------~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLT-----AHLHQAHSQDVNCVAWNPKEPG---------LLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp ECTTSCTTSCCEEEE-----EEETTSSSSCEEEEEECSSSTT---------EEEEEETTSCEEEEEECC-
T ss_pred eCCCCCcceeeEEEE-----eeecccccCcEeEeEEeCCCce---------EEEEcCCCCcEEEEEecCC
Confidence 8654221 10000 0011579999999999999865 7999999999999997543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=252.03 Aligned_cols=285 Identities=16% Similarity=0.150 Sum_probs=213.5
Q ss_pred CcccceeeEEecCCCCCCC-CeEEEEee---cCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-C---CCeEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLS-KLAVLAIY---DTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-H---QSLVAA 87 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~-~~l~t~s~---D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~---~~~l~~ 87 (343)
.|...|.+++|+| ++ .++++|+. |+ .+++|++.... ........|...|.+++|+ + +.+|++
T Consensus 16 ~h~~~v~~~~~~p----~~~~l~~~~s~~~~d~-----~v~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 16 GFNYTVFDCKWVP----CSAKFVTMGNFARGTG-----VIQLYEIQHGD-LKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp ECSSCEEEEEECT----TSSEEEEEEC--CCCE-----EEEEEEECSSS-EEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred CCCCceEEEEEcC----CCceEEEecCccCCCc-----EEEEEeCCCCc-ccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 4888999999999 55 56667776 54 37799996532 2223345788999999999 4 599999
Q ss_pred EcCCCcEEEEEccCce-eeeeeccCCccccCeEEEEe------c--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC--
Q 019258 88 STLSGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDL------T--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG-- 156 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~------~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~-- 156 (343)
++.||.|++|++...+ .+... ..|...|.++.| + ++.+++++.||.|++||++++..+...+..+.
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred ecCCCeEEEEeCCCCCccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 9999999999998554 33322 369999999965 3 77999999999999999998753444443322
Q ss_pred -ccceEEEE----eCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC---CCCeEEEEE
Q 019258 157 -LVGFNCVK----WAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP---SRKHTCLAG 227 (343)
Q Consensus 157 -~~~v~~~~----~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p---~~~~~~~sg 227 (343)
...+.++. |++ +..+++++.|+.|++||++. .+.. ....+. ..|.+++|+| ++. .+++|
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~-~~~~~~-------~~v~~~~~~~~~~~~~-~l~~~ 230 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN---MALR-WETNIK-------NGVCSLEFDRKDISMN-KLVAT 230 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT---TEEE-EEEECS-------SCEEEEEESCSSSSCC-EEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc---Ccee-eecCCC-------CceEEEEcCCCCCCCC-EEEEE
Confidence 23688888 667 88999999999999999988 4443 333333 7799999999 665 56789
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC---
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--- 304 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--- 304 (343)
+.||.|++||++.......+.. .....|...|.+++|+|++.. .+++++.||.|++|+....
T Consensus 231 ~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~---------~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 231 SLEGKFHVFDMRTQHPTKGFAS------VSEKAHKSTVWQVRHLPQNRE---------LFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp ESTTEEEEEEEEEEETTTEEEE------EEEECCSSCEEEEEEETTEEE---------EEEEEETTSEEEEEEEECCSCC
T ss_pred CCCCeEEEEeCcCCCcccceee------eccCCCcCCEEEEEECCCCCc---------EEEEEeCCCcEEEeecCCCccc
Confidence 9999999999987433222110 001368999999999998875 6999999999999996421
Q ss_pred ------------------cccccccccccceeeecCCCCCeeE-EccCCceEEEEe
Q 019258 305 ------------------PFELLAEPCAINSFDIDPQNPSDVI-CSLEWESIAIVS 341 (343)
Q Consensus 305 ------------------~~~~~~~~~~i~s~~~~~~~~~~l~-~~~~~~~i~~~~ 341 (343)
...+..+..+|.+++|+| ++.+|+ +++.|+.|++|+
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEE
T ss_pred ccccCCCCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEE
Confidence 112223357899999999 567787 899999999997
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=252.48 Aligned_cols=300 Identities=12% Similarity=0.133 Sum_probs=217.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc---cCCCCCCeeEEEcc-C----CCeEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS---QWTPPTRISSLSTS-H----QSLVAA 87 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~---~~~~~~~v~~v~~~-~----~~~l~~ 87 (343)
.|...|.+++|+|........+++++.++ .+++|++........+. ...|...|.+++|+ + +.+|++
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~-----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSN-----RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETT-----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCC-----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 58899999999994222344555555554 37799996433222222 22367889999999 4 568999
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEE---cCCCccceE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVY---DGNGLVGFN 161 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~ 161 (343)
|+.||.|++|++...+.+.... .|..+|.++.|+ +..+++++.||.|++||+++++ ....+ ..+.. .|.
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~-~v~ 165 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYV---GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRD-EVL 165 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEE---SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSS-CEE
T ss_pred ecCCCEEEEEEchhceEeeeec---CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccC-cee
Confidence 9999999999998665554432 589999999997 6899999999999999999885 55554 44555 899
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc---------------------cCCCCCcccCeEEEEEcCC
Q 019258 162 CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN---------------------FGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~i~~v~~~p~ 219 (343)
+++|+| +..+++++.|+.|++||++. .+.+..+... ......+...|.+++|+
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCC---CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 999999 88999999999999999986 3322222110 00000022789999998
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCC---cccccCCccccEEEEEEeec--CCCCcCCCCCccceEEEecCC
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG---EAVTHSLSESEVWEVQYDCH--TKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~--~~~~~~~~~~~~~l~s~s~dg 294 (343)
+. ++++++.||.|++||+++...+......... .......|...|++++|+|+ +. .|++++.||
T Consensus 241 ~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~----------~l~~~~~dg 309 (366)
T 3k26_A 241 GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK----------MLALGNQVG 309 (366)
T ss_dssp TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS----------EEEEECTTS
T ss_pred CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc----------EEEEEecCC
Confidence 33 6789999999999999875431110000000 00011568889999999999 66 799999999
Q ss_pred eEEEEecCCCc-c-----ccccc--ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 295 ILAVVEQGEEP-F-----ELLAE--PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 295 ~i~~~~~~~~~-~-----~~~~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.|++|+..... . .+..+ ..+|.+++|+| ++++|+++++++.|++|+.
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC
T ss_pred cEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEe
Confidence 99999986432 1 22223 47899999999 6799999999999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=257.58 Aligned_cols=293 Identities=8% Similarity=-0.039 Sum_probs=204.2
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+++.+ +...|.+++|+| ++++|++|+.|+. |++|++.............|.+.|.+++|+ ++++|++++
T Consensus 5 ~~~~~-~~~~v~~~~~s~----~g~~l~~~~~d~~-----i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 74 (377)
T 3dwl_C 5 QVLHI-LPKPSYEHAFNS----QRTEFVTTTATNQ-----VELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS 74 (377)
T ss_dssp EEEEE-CSSCCSCCEECS----SSSEEECCCSSSC-----BCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred eeEec-CCCcEEEEEECC----CCCEEEEecCCCE-----EEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe
Confidence 34443 345899999999 8999999999975 569999653111112233688999999999 888999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce--EEEEEcC-CCccceEEEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE--FKRVYDG-NGLVGFNCVK 164 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~--~~~~~~~-~~~~~v~~~~ 164 (343)
.||.|++|++...+..........|...|.++.|+ ++.|++++.|+.|++||++++.. ....+.. |.. .|.+++
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~ 153 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-TILSLD 153 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-CEEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-CeEEEE
Confidence 99999999998554111122223689999999998 88999999999999999988642 2344444 555 899999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCC---------------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGS---------------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
|+| +..|++++.|+.|++||++.... ++++..+ .+. ..|.+++|+|++. ++++|+
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~v~~~~~sp~~~-~l~~~~ 224 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG-------GWVHAVGFSPSGN-ALAYAG 224 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS-------SSEEEEEECTTSS-CEEEEE
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC-------ceEEEEEECCCCC-EEEEEe
Confidence 999 78999999999999999963100 1112222 222 7899999999986 567999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc---
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--- 305 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--- 305 (343)
.||.|++||+++...+...... ...|...|.+++|+|++. +|++++.|+.+ +|+.....
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~----------~l~~~~~~~~~-~~~~~~~~~~~ 286 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRALIT-------VKLSQLPLRSLLWANESA----------IVAAGYNYSPI-LLQGNESGWAH 286 (377)
T ss_dssp TTTEEC-CEECSTTSCEEECCC-------EECSSSCEEEEEEEETTE----------EEEEESSSSEE-EECCCC---CC
T ss_pred CCCcEEEEECCCCCCcceeeEe-------ecCCCCceEEEEEcCCCC----------EEEEEcCCcEE-EEEeCCCceEE
Confidence 9999999999987663221110 156889999999999976 67787766666 55443110
Q ss_pred c---c-------------------------------cc-----------------ccccccceeeecCCCCC---eeEEc
Q 019258 306 F---E-------------------------------LL-----------------AEPCAINSFDIDPQNPS---DVICS 331 (343)
Q Consensus 306 ~---~-------------------------------~~-----------------~~~~~i~s~~~~~~~~~---~l~~~ 331 (343)
. + .+ .+...|+++.+.+..+. .++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~ 366 (377)
T 3dwl_C 287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSS 366 (377)
T ss_dssp SBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEee
Confidence 0 0 00 02356888887653333 69999
Q ss_pred cCCceEEEEe
Q 019258 332 LEWESIAIVS 341 (343)
Q Consensus 332 ~~~~~i~~~~ 341 (343)
+.|+.|++|+
T Consensus 367 g~Dg~i~iWd 376 (377)
T 3dwl_C 367 GTDGRVVLWT 376 (377)
T ss_dssp ETTSEEEEEC
T ss_pred cCCCcEEEec
Confidence 9999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=246.17 Aligned_cols=288 Identities=10% Similarity=0.067 Sum_probs=211.6
Q ss_pred CcccceeeEEecCCCCCCC-CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc--CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLS-KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS--HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~-~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg 92 (343)
.|...|.+++|+| ++ ++|++|+.|+. |++|++........+....|.+.|.+++|+ ++.+|++++.||
T Consensus 71 ~h~~~v~~~~~~~----~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 71 PFDRRVTSLEWHP----THPTTVAVGSKGGD-----IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CCSSCEEEEEECS----SCTTEEEEEEBTSC-----EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCCCCEEEEEECC----CCCCEEEEEcCCCe-----EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 5788999999999 66 89999999975 779999654333223334689999999999 358899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
.|++|++... .+........|...|.+++|+ +..+++++.||.|++||++.. ....+..|.. .|.+++|+| +.
T Consensus 142 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~h~~-~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--EIFKEKLHKA-KVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--EEEEEECSSS-CEEEEEECSSCT
T ss_pred EEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--EEEEeccCCC-cEEEEEECCCCC
Confidence 9999999853 333333333567889999999 899999999999999999543 4444455655 799999999 55
Q ss_pred -EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC-CCCeEEEEEecCCcEEEEEccCCceeeee
Q 019258 170 -EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP-SRKHTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 170 -~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.+++++.|+.|++||++.......+.....+. ..|.+++|+| ++. ++++++.||.|++||+++...+..+
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE-------KPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS-------SCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEE
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEecCC-------CceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCcccccc
Confidence 89999999999999998721112233333343 7899999999 765 5689999999999999887655444
Q ss_pred ecCCCCcccccCCcc----------ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccc--ccc
Q 019258 248 SGVGTGEAVTHSLSE----------SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLA--EPC 313 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~----------~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~--~~~ 313 (343)
...... ...|. ..+..++|+|++. + +++.||.|++|+.... . ..+.. ...
T Consensus 290 ~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~s~dg~----------~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~ 353 (383)
T 3ei3_B 290 IIHPHR----QFQHLTPIKATWHPMYDLIVAGRYPDDQ----------L--LLNDKRTIDIYDANSGGLVHQLRDPNAAG 353 (383)
T ss_dssp EECCBC----CCTTSCCCCCEECSSSSEEEEECBCCTT----------T--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred cccccc----ccccccceEEeccCCCCceEEEecCCcc----------c--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence 321100 01122 2344466666554 3 7889999999997432 2 23332 235
Q ss_pred ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 314 AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 314 ~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+..++|+| ++.+|++|+ ++.|++|+-
T Consensus 354 ~~~~~~~s~-~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 354 IISLNKFSP-TGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp CCCEEEECT-TSSEEEEEE-TTEEEEEEC
T ss_pred eEEEEEEec-CccEEEEec-CCcEEEEec
Confidence 677789999 678999997 789999974
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=256.30 Aligned_cols=295 Identities=10% Similarity=0.064 Sum_probs=219.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC---CCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL---PASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~---~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
.|...|.+|+|+| .++++|++|+.|+. |++|++.. .....+...+.|.+.|.+++|+ ++.+|++++.|
T Consensus 61 ~h~~~V~~~~~s~---~~~~~l~s~s~dg~-----v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 61 NEPNSITSSAVSP---GETPYLITGSDQGV-----IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp TTTSCEEEEEEEC---SSSCEEEEEETTSE-----EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceEEEEECC---CCCCEEEEecCCce-----EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 4678999999999 46789999999975 77999844 2223334455789999999999 78899999999
Q ss_pred CcEEEEEcc---Cceeee--------eeccCC-ccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcC-
Q 019258 92 GSLHVLSSA---MQVLLS--------VDENSG-FHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDG- 154 (343)
Q Consensus 92 g~v~v~~~~---~~~~~~--------~~~~~~-~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~- 154 (343)
|.|++|++. ..+... ...... .+...+.++.+. +..+++++.||.|++||+++++. ...+..
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~ 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIENS 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-EEEEECC
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-eEEEccC
Confidence 999999995 222111 111110 155677777744 78999999999999999999854 444444
Q ss_pred -CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCC---CCeEEEEEe
Q 019258 155 -NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPS---RKHTCLAGG 228 (343)
Q Consensus 155 -~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~---~~~~~~sg~ 228 (343)
|.. .|.+++|+| +..+++++.|+.|++||++. ++++..+. .+. .+|.+++++|. ...++++|+
T Consensus 212 ~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~-------~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 212 PRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRF---NVLIRSWSFGDH-------APITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp GGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTT---TEEEEEEBCTTC-------EEEEEEEECTTTCTTEEEEEEES
T ss_pred CCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCC---ccEEEEEecCCC-------CceEEEEeccccCCCccEEEEEc
Confidence 444 799999999 88999999999999999998 67777665 333 67999977764 234788999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcc---c----------ccC--CccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEA---V----------THS--LSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~---~----------~~~--~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
.||.|++||+++++....+........ . ... .|...|++++|+ ++. .|++++.|
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~----------~l~s~~~d 349 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK----------ILLTDEAT 349 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE----------EEEEEGGG
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce----------EEEecCCC
Confidence 999999999998765555442210000 0 001 288889999999 554 79999999
Q ss_pred CeEEEEecCCC--cccccc-------------------------------------cccccceeeecCC-CCCeeEEccC
Q 019258 294 GILAVVEQGEE--PFELLA-------------------------------------EPCAINSFDIDPQ-NPSDVICSLE 333 (343)
Q Consensus 294 g~i~~~~~~~~--~~~~~~-------------------------------------~~~~i~s~~~~~~-~~~~l~~~~~ 333 (343)
|.|++|+.... ...+.. +...|+++++.++ ++.+|++|++
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 99999996432 122221 3467899999874 3579999999
Q ss_pred CceEEEEe
Q 019258 334 WESIAIVS 341 (343)
Q Consensus 334 ~~~i~~~~ 341 (343)
++.|++|+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=250.59 Aligned_cols=288 Identities=14% Similarity=0.048 Sum_probs=219.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC----CCCCCccCCCCCCeeEEEcc-C----C---C
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA----SLTPHSQWTPPTRISSLSTS-H----Q---S 83 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~----~~~~~~~~~~~~~v~~v~~~-~----~---~ 83 (343)
.|...|.+|+|+| ++|++|+.|+. |++|++.... .........|...|.+++|+ + + .
T Consensus 14 ~h~~~i~~~~~~~------~~l~s~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 14 AHDADIFSVSACN------SFTVSCSGDGY-----LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp CSSSCEEEEEECS------SEEEEEETTSE-----EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhcCeEEEEecC------CeEEEEcCCCE-----EEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 5889999999988 58999999975 7799996543 11123334688999999999 6 7 8
Q ss_pred eEEEEcCCCcEEEEEccCcee-----eeeeccCCcc-----ccCeEEEEec------CCE-EEEEeCCCcEEEEECCC--
Q 019258 84 LVAASTLSGSLHVLSSAMQVL-----LSVDENSGFH-----VGPISGVDLT------GSE-CVSVGEDGRVNLVSVIG-- 144 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~-----~~~~~~~~~h-----~~~v~~~~~~------~~~-~~s~s~dg~v~~wd~~~-- 144 (343)
+|++++.||.|++|++...+. +.... .| ...|.++.|+ +.. +++++.||.|++||+++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999999985443 33222 35 5899999997 778 99999999999999987
Q ss_pred ----CceEE-----EEE------cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEec---c---cC
Q 019258 145 ----GGEFK-----RVY------DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG---N---FG 202 (343)
Q Consensus 145 ----~~~~~-----~~~------~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~---~---~~ 202 (343)
+.... .+. ..+.. .+.+++|+| + .+++++.|+.|++||++. .+++..+.. + .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~h~~~~- 233 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQ-FATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQHSMINNS- 233 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCC-CCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECCC---CCC-
T ss_pred cccccceeeccCcceeeeeeccccCCCC-CceEEEECCCc-eEEEEeCCCcEEEEECCC---CceeEEEeccccccccC-
Confidence 43222 332 22343 799999999 6 999999999999999998 677777776 4 3
Q ss_pred CCCCcccCeEEEEEcCCCCeEEEEEecC---CcEEEEEccCCceeeeeecCCC--CcccccCCccccEEEEEEeecCCCC
Q 019258 203 SQGKASGMIHSVDIHPSRKHTCLAGGSS---GTVFAWDLRWQQQSIVLSGVGT--GEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 203 ~~~~~~~~i~~v~~~p~~~~~~~sg~~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
..|.+++|+|++. ++++|+.| |.|++||+++.+....+..... ........|...|.+++|+|++.
T Consensus 234 ------~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 304 (397)
T 1sq9_A 234 ------NSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-- 304 (397)
T ss_dssp ------CCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS--
T ss_pred ------CccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC--
Confidence 7899999999976 56789999 9999999998654443320000 00000001889999999999987
Q ss_pred cCCCCCccceEEEecCCeEEEEecCCC--ccccc------cc---------------ccccceeeecCCCC---------
Q 019258 278 NISSSRVLPAMFCSEDGILAVVEQGEE--PFELL------AE---------------PCAINSFDIDPQNP--------- 325 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~------~~---------------~~~i~s~~~~~~~~--------- 325 (343)
+|++++.||.|++|+.... ...+. .. ..+|++++++| ++
T Consensus 305 --------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~ 375 (397)
T 1sq9_A 305 --------TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADL 375 (397)
T ss_dssp --------EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTT
T ss_pred --------EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccc
Confidence 7999999999999997532 22333 23 57899999999 44
Q ss_pred -CeeEEccCCceEEEEe
Q 019258 326 -SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 -~~l~~~~~~~~i~~~~ 341 (343)
.+|++|+.++.|++|+
T Consensus 376 ~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SCEEEEEETTTEEEEEE
T ss_pred cceEEEecCCCcEEEEE
Confidence 6999999999999997
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=249.39 Aligned_cols=280 Identities=15% Similarity=0.136 Sum_probs=214.8
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.+..++|+| ++++|++|+.|+. +++|++..... ...+.....+....|+ ++++|++++.||.|++|+
T Consensus 58 ~~~~~~~s~----~g~~l~~~~~d~~-----v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 58 AGKGNTFEK----VGSHLYKARLDGH-----DFLFNTIIRDG---SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CCTTCEEEE----EETTEEEEEETTE-----EEEEECCSEET---TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred cccceeeee----cCCeEEEEEcCCc-----EEEEEecccce---eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 355899999 8999999999965 77999955322 2222333334444566 889999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~ 175 (343)
+...+.... ...|.+.|++++|+ ++.+++++.|++|++||+++++.. ..+..|.. .|.+++|+| +..|++++
T Consensus 126 ~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~-~v~~~~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 126 SNFNLQREI---DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRA-TVTDIAIIDRGRNVLSAS 200 (420)
T ss_dssp TTSCEEEEE---TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSS-CEEEEEEETTTTEEEEEE
T ss_pred CCCcceeee---cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCC-cEEEEEEcCCCCEEEEEc
Confidence 986554433 23699999999998 889999999999999999987544 44455655 799999999 88999999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCC-----------------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK-----------------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
.|++|++||++. ++++..+..+..+... +...+.+++|+|++. ++++|+.||.|++||+
T Consensus 201 ~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 201 LDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNV 276 (420)
T ss_dssp TTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEET
T ss_pred CCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEEC
Confidence 999999999998 6777777654322200 013344445577764 5689999999999999
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC---cccccc-cccc
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE---PFELLA-EPCA 314 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~---~~~~~~-~~~~ 314 (343)
++......+. ..|...|.+++|+|++.. +|++++.||.|++|+.... ...+.. +..+
T Consensus 277 ~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 277 FSKEQTIQLP----------SKFTCSCNSLTVDGNNAN---------YIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTCCEEEEEC----------CTTSSCEEEEEECSSCTT---------EEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCceeEEcc----------cccCCCceeEEEeCCCCC---------EEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 9877666665 568899999999999886 7999999999999997543 223333 3467
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.++.+.+ +.+|++++.|+.|++|+
T Consensus 338 v~~~~~~~--~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 338 INNVYFAA--GALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEEEEET--TEEEEEETTTEEEEEEE
T ss_pred ceEEEeCC--CCEEEEecCCccEEEEe
Confidence 88887664 57999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=239.17 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=222.7
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSG 92 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg 92 (343)
..|...|.+++|+| ++++|++|+.|+. |++|++.... ++.. ..|.+.|.+++|+ ++++|++++.||
T Consensus 29 ~~h~~~v~~~~~s~----~~~~l~~~~~dg~-----i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 29 TGHERPLTQVKYNK----EGDLLFSCSKDSS-----ASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96 (369)
T ss_dssp ECCSSCEEEEEECT----TSCEEEEEESSSC-----EEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred EEeeceEEEEEEcC----CCCEEEEEeCCCE-----EEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence 36889999999999 8899999999975 7799996532 2233 3588999999999 889999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC-----CcEEEEECCCCce-----------EEEEEcC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED-----GRVNLVSVIGGGE-----------FKRVYDG 154 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d-----g~v~~wd~~~~~~-----------~~~~~~~ 154 (343)
.|++|++...+.+.... |..+|.++.|+ +..+++++.+ |.|.+||+..... .......
T Consensus 97 ~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred eEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999998666554442 67799999999 8899999999 9999999965421 1222222
Q ss_pred CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 155 NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.....+.+++|++ +..+++++.|+.|++||++. ...++..+..+. ..|.+++|+|++. ++++++.||.|
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~-------~~v~~~~~~~~~~-~l~~~~~d~~i 242 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN--NYEYVDSIDLHE-------KSISDMQFSPDLT-YFITSSRDTNS 242 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT--TTEEEEEEECCS-------SCEEEEEECTTSS-EEEEEETTSEE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC--CcEeEEEEecCC-------CceeEEEECCCCC-EEEEecCCceE
Confidence 2222699999999 88999999999999999987 345555666554 7899999999876 56789999999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC--------------eEEEE
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG--------------ILAVV 299 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg--------------~i~~~ 299 (343)
++||+++......+. +...+..++|+|++. .+++++.++ .+++|
T Consensus 243 ~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 243 FLVDVSTLQVLKKYE------------TDCPLNTAVITPLKE----------FIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EEEETTTCCEEEEEE------------CSSCEEEEEECSSSS----------EEEEEECCC-------------CEEEEE
T ss_pred EEEECCCCceeeeec------------CCCCceeEEecCCCc----------eEEEeecCCCceEEEEecCCCcceeEEE
Confidence 999999865554443 678899999999988 788888888 78999
Q ss_pred ecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 300 EQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 300 ~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+.... ...+..+..+|.+++++| ++++|++++.|+.|++|+-
T Consensus 301 d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 301 HKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEE
T ss_pred ecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 87533 223334467899999999 6799999999999999973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=242.88 Aligned_cols=240 Identities=17% Similarity=0.139 Sum_probs=194.0
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC---C-CCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS---L-TPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~---~-~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
+...|.+++|+| ++.++++|+.|+. +++|++..... . .......|.+.|.++.|+ ++..|++++.|
T Consensus 105 ~~~~v~~~~~sp----~g~~lasg~~d~~-----i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D 175 (354)
T 2pbi_B 105 PCTWVMACAYAP----SGCAIACGGLDNK-----CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175 (354)
T ss_dssp SSSCCCEEEECT----TSSEEEEESTTSE-----EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCEEEEEECC----CCCEEEEeeCCCC-----EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC
Confidence 456789999999 8999999999975 66998853211 1 112223588899999999 77899999999
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
|+|++||+...+.+.... +|...|.++++. +..|++++.||+|++||+++++ +...+..|.. .|.+++|+|
T Consensus 176 ~~v~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~-~v~~v~~~p 250 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFH---GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHES-DVNSVRYYP 250 (354)
T ss_dssp SEEEEEETTTCCEEEEEE---CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSS-CEEEEEECT
T ss_pred CcEEEEeCCCCeEEEEEc---CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCC-CeEEEEEeC
Confidence 999999998766554432 688999999886 5799999999999999999985 5666666766 899999999
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
+..|++++.|++|++||++. ...+..+..+. ....+.+++|+|++. ++++|+.||+|++||++++... .
T Consensus 251 ~~~~l~s~s~D~~v~lwd~~~---~~~~~~~~~~~-----~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~-~ 320 (354)
T 2pbi_B 251 SGDAFASGSDDATCRLYDLRA---DREVAIYSKES-----IIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRV-S 320 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTT---TEEEEEECCTT-----CCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEE-E
T ss_pred CCCEEEEEeCCCeEEEEECCC---CcEEEEEcCCC-----cccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceE-E
Confidence 88999999999999999988 55544443221 114689999999986 5689999999999999875543 3
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+ .+|.+.|++++|+|++. +|+++|.||+|++|+
T Consensus 321 ~l----------~~h~~~v~~l~~spdg~----------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 IL----------FGHENRVSTLRVSPDGT----------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp EE----------CCCSSCEEEEEECTTSS----------CEEEEETTSEEEEEC
T ss_pred EE----------ECCCCcEEEEEECCCCC----------EEEEEcCCCCEEecC
Confidence 34 57999999999999988 799999999999995
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=252.08 Aligned_cols=246 Identities=15% Similarity=0.236 Sum_probs=187.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc---CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS---HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~l~~~s~dg 92 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++.............|.+.|.+++|+ ++.+|++++.|+
T Consensus 11 ~H~~~V~~v~~s~----~g~~lasgs~D~~-----v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 11 SHEDMIHDAQMDY----YGTRLATCSSDRS-----VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp ---CCEEEEEECG----GGCEEEEEETTTE-----EEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred cccCeEEEeeEcC----CCCEEEEEeCCCe-----EEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 6889999999999 8999999999975 779999543211112234689999999997 378999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceE--EEEEcCCCccceEEEEeC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEF--KRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~ 166 (343)
+|++||+...+...... ...|...|.+++|+ +..+++++.|++|++||++.+... ...+..|.. .+.+++|+
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~~ 159 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-GCNAVSWA 159 (316)
T ss_dssp CEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-CBCCCEEC
T ss_pred EEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-CcceEEEc
Confidence 99999998542111111 23699999999997 458999999999999999875322 233344544 78999998
Q ss_pred CC------------------CEEEEEeCCCcEEEEEccccCCCC---CeeEEecccCCCCCcccCeEEEEEcCCC---Ce
Q 019258 167 SP------------------TEFVTGGFGYGLQWWDLRRAGSGG---PVLQFKGNFGSQGKASGMIHSVDIHPSR---KH 222 (343)
Q Consensus 167 ~~------------------~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~v~~~p~~---~~ 222 (343)
|. ..|++++.|++|++||++. .. ++..+.+|. .+|.+++|+|++ ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~---~~~~~~~~~l~~h~-------~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE---DGQWKEEQKLEAHS-------DWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT---TSCEEEEECCBCCS-------SCEEEEECCCCSSCSCC
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCC---CCccceeeecccCC-------CceEEEEecCCCCCCCc
Confidence 83 5799999999999999976 32 333455444 789999999986 35
Q ss_pred EEEEEecCCcEEEEEccCCc---eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 223 TCLAGGSSGTVFAWDLRWQQ---QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
+|++|+.||+|++||++... .....+ ..|...|++++|+|++. .|++++.||+|++|
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~----------~~~~~~v~~v~~sp~g~----------~las~~~D~~v~lw 289 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLL----------HKFNDVVWHVSWSITAN----------ILAVSGGDNKVTLW 289 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEE----------EECSSCEEEEEECTTTC----------CEEEEESSSCEEEE
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhh----------hcCCCcEEEEEEcCCCC----------EEEEEcCCCeEEEE
Confidence 78999999999999997631 111222 35788999999999987 79999999999999
Q ss_pred ecC
Q 019258 300 EQG 302 (343)
Q Consensus 300 ~~~ 302 (343)
+..
T Consensus 290 ~~~ 292 (316)
T 3bg1_A 290 KES 292 (316)
T ss_dssp EEC
T ss_pred EEC
Confidence 975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=238.64 Aligned_cols=238 Identities=16% Similarity=0.157 Sum_probs=190.8
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCce-e-eeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQV-L-LSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~-~-~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
..|.+.|++++|+ .+++|++|+.|++|++|++.... . -.......+|...|.++.|+ +.++++++.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 3689999999998 45799999999999999986321 1 11122234699999999998 88999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
+.+++ ....+..|.. .|.+++|++ +..+++++.|++|++||++. ..+..+.+|. ..|.++++.|..
T Consensus 94 ~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~-------~~v~~~~~~~~~ 160 (319)
T 3frx_A 94 VATGE-TYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHN-------DWVSQVRVVPNE 160 (319)
T ss_dssp TTTTE-EEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCS-------SCEEEEEECCC-
T ss_pred CCCCC-eeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccC-------CcEEEEEEccCC
Confidence 99985 5555566766 899999999 88999999999999999965 5666676665 789999999964
Q ss_pred C-----eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe
Q 019258 221 K-----HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 221 ~-----~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~ 295 (343)
. ..+++|+.|+.|++||+++.+....+ .+|...|.+++|+|++. +|++++.||+
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----------~~h~~~v~~~~~sp~g~----------~l~s~~~dg~ 219 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADF-----------IGHNSNINTLTASPDGT----------LIASAGKDGE 219 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEE-----------CCCCSCEEEEEECTTSS----------EEEEEETTCE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheee-----------cCCCCcEEEEEEcCCCC----------EEEEEeCCCe
Confidence 2 36789999999999999885544333 46999999999999987 7999999999
Q ss_pred EEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 296 LAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 296 i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|++|+.... ....+..+.+|.+++++| ++.++++++++ .+.+|.
T Consensus 220 i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~-~i~v~~ 264 (319)
T 3frx_A 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSP-NRYWLAAATAT-GIKVFS 264 (319)
T ss_dssp EEEEETTTTEEEEEEECCSCEEEEEECS-SSSEEEEEETT-EEEEEE
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEEcC-CCCEEEEEcCC-CcEEEE
Confidence 999997643 233334457899999999 56888887755 577764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=248.55 Aligned_cols=278 Identities=12% Similarity=0.079 Sum_probs=212.0
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
..+....|+| ++++|++|+.|+. +++|++... .+... ..|.+.|.+++|+ ++.+|++++.||.|++
T Consensus 98 ~~~~~~~~~~----~~~~l~~~~~dg~-----i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 165 (420)
T 3vl1_A 98 DYTAVDTAKL----QMRRFILGTTEGD-----IKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI 165 (420)
T ss_dssp CEEEEEEECS----SSCEEEEEETTSC-----EEEECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceEEEEEec----CCCEEEEEECCCC-----EEEEeCCCc---ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence 3344446677 8899999999975 779998643 22333 3788999999999 8889999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC---Cc--------------
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN---GL-------------- 157 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~---~~-------------- 157 (343)
|++...+.+... ..|.+.|.++.|+ +..+++++.||+|++||+++++ ....+..+ ..
T Consensus 166 wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 166 WSVKDGSNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp EETTTCCCCEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred EeCCCCcCceEE---cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcce
Confidence 999865544333 2699999999998 8899999999999999999885 44444432 11
Q ss_pred ------cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 158 ------VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 158 ------~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..+.+++|+| +..+++++.|+.|++||++. ++.+..+.... . ..|.+++|+|++..++++|+.|
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~--~----~~v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS---KEQTIQLPSKF--T----CSCNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT---CCEEEEECCTT--S----SCEEEEEECSSCTTEEEEEETT
T ss_pred eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC---CceeEEccccc--C----CCceeEEEeCCCCCEEEEEeCC
Confidence 1344445567 67899999999999999998 66666654322 1 7799999999987678899999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--c---
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--P--- 305 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~--- 305 (343)
|.|++||++++..+..... ..|...|..+.+. ++. .|++++.||.|++|+.... +
T Consensus 313 g~i~vwd~~~~~~~~~~~~---------~~~~~~v~~~~~~-~~~----------~l~s~~~d~~v~iw~~~~~~~~~~~ 372 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFL---------INEGTPINNVYFA-AGA----------LFVSSGFDTSIKLDIISDPESERPA 372 (420)
T ss_dssp SEEEEEETTCTTSCSEEEE---------ESTTSCEEEEEEE-TTE----------EEEEETTTEEEEEEEECCTTCCSCE
T ss_pred CeEEEEEcCCCcCchhhhh---------ccCCCCceEEEeC-CCC----------EEEEecCCccEEEEeccCCCCCccc
Confidence 9999999998766555441 2367788888655 554 7999999999999996431 1
Q ss_pred ------ccccccccccceeeecCCCCC---eeEEccCCceEEEEeC
Q 019258 306 ------FELLAEPCAINSFDIDPQNPS---DVICSLEWESIAIVSR 342 (343)
Q Consensus 306 ------~~~~~~~~~i~s~~~~~~~~~---~l~~~~~~~~i~~~~~ 342 (343)
..+......|.++.++| ++. .+++.++++.+.+|+-
T Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 373 IEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp ECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEES
T ss_pred eeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEec
Confidence 12223346899999999 456 6788888999999874
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=244.40 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=186.0
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|.+.|++++|+ ++++|++|+.|++|+|||+.......+. ...+|.++|.+++|+ ++.|++++.|++|++||+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE-EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE-EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 3688999999999 8899999999999999999854322222 223699999999995 689999999999999999
Q ss_pred CCCc-eEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCee---EEecccCCCCCcccCeEEEE
Q 019258 143 IGGG-EFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVL---QFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~v~ 215 (343)
+++. .....+..|.. .|.+++|+| +..|++++.|++|++||++. ..... .+..|. ..+.+++
T Consensus 89 ~~~~~~~~~~~~~h~~-~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~---~~~~~~~~~~~~h~-------~~v~~~~ 157 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDS-SVNSVCWAPHDYGLILACGSSDGAISLLTYTG---EGQWEVKKINNAHT-------IGCNAVS 157 (316)
T ss_dssp SSSCCCEEEEECCCSS-CCCEEEECCTTTCSCEEEECSSSCEEEEEECS---SSCEEECCBTTSSS-------SCBCCCE
T ss_pred CCCcceEEEEccCCCC-ceEEEEECCCCCCcEEEEEcCCCCEEEEecCC---CCCcceeeeecccc-------CCcceEE
Confidence 8753 23344555665 799999998 45799999999999999987 32221 122222 6799999
Q ss_pred EcCCC----------------CeEEEEEecCCcEEEEEccCCc--eeeeeecCCCCcccccCCccccEEEEEEeecC---
Q 019258 216 IHPSR----------------KHTCLAGGSSGTVFAWDLRWQQ--QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHT--- 274 (343)
Q Consensus 216 ~~p~~----------------~~~~~sg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~--- 274 (343)
|+|+. ..+|++|+.|++|++||++... .+...+ .+|...|.+++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l----------~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL----------EAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC----------BCCSSCEEEEECCCCSSCS
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec----------ccCCCceEEEEecCCCCCC
Confidence 99973 1467899999999999997542 233333 6799999999999986
Q ss_pred CCCcCCCCCccceEEEecCCeEEEEecCCC-----ccccc-ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 275 KSSNISSSRVLPAMFCSEDGILAVVEQGEE-----PFELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-----~~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. .|+++|.||+|++|+.... ...++ ....+|.+++|+| ++.+|+++++|+.|++|+.
T Consensus 228 ~~---------~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 228 TS---------TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp CC---------EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEE
T ss_pred Cc---------eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEE
Confidence 23 7999999999999986531 11222 2356899999999 6799999999999999973
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=237.68 Aligned_cols=274 Identities=12% Similarity=0.049 Sum_probs=214.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++| | ++++|++|+.|+. |++|++...... .....|.+.|.+++|+ ++.+|++++.||.|
T Consensus 16 ~h~~~v~~~~~-~----~~~~l~s~~~dg~-----v~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 16 GHDQDVRDVVA-V----DDSKVASVSRDGT-----VRLWSKDDQWLG--TVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCSSCEEEEEE-E----ETTEEEEEETTSE-----EEEEEESSSEEE--EEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCCcEEEEe-c----CCCEEEEEEcCCc-----EEEEECCCCEEE--EEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 58889999999 8 7889999999975 779999543221 2234578899999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~ 172 (343)
++|++..............|...|.++.|+++.+++++.||.|++|| .+ .....+..+.. .+.++.|.+ ++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~-~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNA-SVWDAKVVSFSENKFL 159 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-EEEEEEECCSS-CEEEEEEEETTTTEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-cEEEecccCCC-ceeEEEEccCCCCEEE
Confidence 99999743222222222469999999999999999999999999999 44 34444555555 799999987 88999
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+++.|+.|++||.. .....+.... . ..+.+++|+|++. +++|+.||.|++||+++.+.... .
T Consensus 160 ~~~~d~~i~i~d~~-----~~~~~~~~~~--~----~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~-~---- 221 (313)
T 3odt_A 160 TASADKTIKLWQND-----KVIKTFSGIH--N----DVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRT-Y---- 221 (313)
T ss_dssp EEETTSCEEEEETT-----EEEEEECSSC--S----SCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEE-E----
T ss_pred EEECCCCEEEEecC-----ceEEEEeccC--c----ccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhh-h----
Confidence 99999999999953 4445555422 1 7799999999875 67999999999999998654433 3
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccccccccceeeecCCCCCeeEE
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
..|...|.+++|+|++ .+++++.||.|++|+.... . ..+.....+|.++.++| ++. +++
T Consensus 222 ------~~~~~~i~~~~~~~~~-----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~ 282 (313)
T 3odt_A 222 ------EGHESFVYCIKLLPNG-----------DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIV 282 (313)
T ss_dssp ------ECCSSCEEEEEECTTS-----------CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEE
T ss_pred ------hcCCceEEEEEEecCC-----------CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEE
Confidence 4688999999999986 3899999999999997533 2 23333356899999999 445 667
Q ss_pred ccCCceEEEEeC
Q 019258 331 SLEWESIAIVSR 342 (343)
Q Consensus 331 ~~~~~~i~~~~~ 342 (343)
++.++.|++|+.
T Consensus 283 ~~~dg~i~iw~~ 294 (313)
T 3odt_A 283 GSSDNLVRIFSQ 294 (313)
T ss_dssp EETTSCEEEEES
T ss_pred EeCCCcEEEEeC
Confidence 888999999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=241.35 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=181.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC----CCCCCc-cCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA----SLTPHS-QWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~----~~~~~~-~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
|...|.+|+|+| ++++|++|+.|+. +++|++.... ...++. ...|.+.|.+++|+ ++.+|++++.
T Consensus 57 h~~~v~~v~~sp----~~~~las~s~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 57 HKKAIRSVAWRP----HTSLLAAGSFDST-----VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp CCSCEEEEEECT----TSSEEEEEETTSC-----EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred ccCCEEEEEECC----CCCEEEEEeCCCc-----EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 888999999999 8899999999975 7799984321 112222 24688999999999 8899999999
Q ss_pred CCcEEEEEccC-ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCCCccceEEEEeC
Q 019258 91 SGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 91 dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~ 166 (343)
|++|++|++.. ............|...|.++.|+ +..|++++.|++|++||..++. .+...+..|.. .|.+++|+
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~ 206 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-TVWSSDFD 206 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-CEEEEEEC
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-cEEEEEec
Confidence 99999999952 22222222234699999999998 8899999999999999987652 34556666766 89999999
Q ss_pred C---CCEEEEEeCCCcEEEEEccccCCC-----CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 167 S---PTEFVTGGFGYGLQWWDLRRAGSG-----GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 167 ~---~~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
| ...+++++.|++|++||++..... .....+.. .+...|.+++|+|.+ ++++|+.||+|++||.
T Consensus 207 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 207 KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD------VHKRQVYNVAWGFNG--LIASVGADGVLAVYEE 278 (330)
T ss_dssp CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS------CCSSCEEEEEECTTS--CEEEEETTSCEEEEEE
T ss_pred CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc------ccccceEEEEEcCCC--EEEEEeCCCEEEEEEc
Confidence 9 347999999999999999861110 11111221 112789999999764 5789999999999999
Q ss_pred cCCce-ee-eeecCCCCcccccCCccc-cEEEEEEeec--CCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 239 RWQQQ-SI-VLSGVGTGEAVTHSLSES-EVWEVQYDCH--TKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 239 ~~~~~-~~-~~~~~~~~~~~~~~~h~~-~v~~v~~~p~--~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+.++. .. ... ..|.. .|.+++|+|. +. .|+++|.||+|++|+..
T Consensus 279 ~~~~~~~~~~~~----------~~h~~~~v~~v~~~~~~~~~----------~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 279 VDGEWKVFAKRA----------LCHGVYEINVVKWLELNGKT----------ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ETTEEEEEEEES----------CTTTTSCEEEEEEC-----C----------CEEEEETTSEEEEEEC-
T ss_pred CCCceEEEeccc----------cccccceEEEEEEecCCCce----------EEEEecCCCcEEEEEec
Confidence 76532 22 222 45776 8999999994 44 79999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=238.87 Aligned_cols=280 Identities=14% Similarity=0.092 Sum_probs=219.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.+...|.+++|+| ++++++++..++. +..|..+. ....+....|.+.|.+++|+ ++.+|++++ ||.|
T Consensus 7 ~~~~~v~~~~~s~----dg~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i 74 (337)
T 1gxr_A 7 MGSKPAYSFHVTA----DGQMQPVPFPPDA-----LIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCV 74 (337)
T ss_dssp EEEEECCEEEECS----SSCEEECCCCTTS-----SSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEE
T ss_pred ccCCceeEEEECC----CCCEEEeecCCCc-----EeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeE
Confidence 3566899999999 8999987765543 33554432 22334556899999999999 788888888 9999
Q ss_pred EEEEccCceeeeeec--cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC-C
Q 019258 95 HVLSSAMQVLLSVDE--NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~--~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
++|++.......... ....|...|.++.|+ ++.+++++.||.|++||+++++. ....+..+.. .+.+++|+| +
T Consensus 75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 153 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDS 153 (337)
T ss_dssp EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTS
T ss_pred EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-ceEEEEECCCC
Confidence 999998443221111 112588899999999 88999999999999999988642 3334444544 799999999 7
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+.+++++.|+.|++||++. ++++..+..+. ..+.+++|+|++. .+++++.||.|++||+++.+....+.
T Consensus 154 ~~l~~~~~dg~v~~~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHN---QTLVRQFQGHT-------DGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp SEEEEEETTSCEEEEETTT---TEEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCC---Cceeeeeeccc-------CceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec
Confidence 8999999999999999988 66677776554 7799999999875 56789999999999999865444433
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCe
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
|...+.+++|+|++. .+++++.||.|++|+.... ...+..+..+|.++.++| ++++
T Consensus 223 ------------~~~~v~~~~~s~~~~----------~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 279 (337)
T 1gxr_A 223 ------------FTSQIFSLGYCPTGE----------WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKW 279 (337)
T ss_dssp ------------CSSCEEEEEECTTSS----------EEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSE
T ss_pred ------------CCCceEEEEECCCCC----------EEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CCCE
Confidence 678899999999987 7999999999999998644 334444567899999999 5799
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
|++++.++.|++|+-
T Consensus 280 l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRT 294 (337)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCCcEEEEEC
Confidence 999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=253.18 Aligned_cols=273 Identities=14% Similarity=0.179 Sum_probs=222.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| +++.+++++.|+. +++|+.+... ......|.+.|.+++|+ ++..|++++.||.|
T Consensus 260 ~~~~~v~~v~~~~----d~~~l~~~~~d~~-----i~~w~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 260 GHSSSVNGVAFRP----DGQTIASASDDKT-----VKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cCCCCEEEEEEcC----CCCEEEEEeCCCE-----EEEEeCCCcE---EEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 4678899999999 8899999999865 7799975421 12234688899999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|+....+ +... ..|...|.+++++ ++.+++++.||.|++||.... ....+..|.. .|.+++|+| +..|
T Consensus 328 ~~w~~~~~~-~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--~~~~~~~~~~-~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 328 KLWNRNGQH-LQTL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSS-SVRGVAFSPDGQTI 400 (577)
T ss_dssp EEEETTSCE-EEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC--EEEEEECCSS-CEEEEEECTTSSCE
T ss_pred EEEeCCCCe-eEEE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC--EEEEecCCCC-CeEEEEECCCCCEE
Confidence 999987443 2222 3588999999998 889999999999999996543 4444455655 799999999 8889
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||. . ++.+..+..+. ..|.+++|+|++. ++++++.|+.|++||... +.. ...
T Consensus 401 ~~~~~d~~v~~~~~-~---~~~~~~~~~~~-------~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~-~~~-~~~--- 463 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-N---GQLLQTLTGHS-------SSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG-QLL-QTL--- 463 (577)
T ss_dssp EEEETTSEEEEECT-T---CCEEEEEECCS-------SCEEEEEECTTSS-EEEEEETTSEEEEEETTS-CEE-EEE---
T ss_pred EEEeCCCEEEEEeC-C---CCEEEEecCCC-------CCeEEEEECCCCC-EEEEEcCCCEEEEEECCC-CEE-EEE---
Confidence 99999999999995 3 46667777665 7899999999876 568999999999999743 333 333
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecCCCCCeeEE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~ 330 (343)
..|...|.+++|+|++. +|++++.|+.|++|+...+. ..+..+..+|++++++| ++++|++
T Consensus 464 -------~~~~~~v~~~~~spd~~----------~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s 525 (577)
T 2ymu_A 464 -------TGHSSSVRGVAFSPDGQ----------TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIAS 525 (577)
T ss_dssp -------ECCSSCEEEEEECTTSC----------EEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred -------cCCCCCEEEEEEcCCCC----------EEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcC-CCCEEEE
Confidence 46899999999999987 79999999999999976443 34444567899999999 6799999
Q ss_pred ccCCceEEEEeC
Q 019258 331 SLEWESIAIVSR 342 (343)
Q Consensus 331 ~~~~~~i~~~~~ 342 (343)
+++|+.|++|+.
T Consensus 526 ~~~dg~v~lwd~ 537 (577)
T 2ymu_A 526 ASDDKTVKLWNR 537 (577)
T ss_dssp EETTSEEEEECT
T ss_pred EECcCEEEEEeC
Confidence 999999999975
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=249.89 Aligned_cols=289 Identities=11% Similarity=0.071 Sum_probs=207.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC--------CCCC-ccCCCC------------CC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS--------LTPH-SQWTPP------------TR 73 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~--------~~~~-~~~~~~------------~~ 73 (343)
..+.+.|.+|+|+| ++++||+|+.|+. |++|++..... .++. ....|. +.
T Consensus 25 ~~~~~~V~~v~~s~----~g~~la~g~~dg~-----v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNH----SGELLATGDKGGR-----VVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECS----SSSEEEEEETTSE-----EEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECC----CCCEEEEEcCCCe-----EEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence 45678999999999 8999999999975 77999864321 1111 223465 78
Q ss_pred eeEEEcc-CC--CeEEEEcCCCcEEEEEccCceeee-------------------------------------eeccCCc
Q 019258 74 ISSLSTS-HQ--SLVAASTLSGSLHVLSSAMQVLLS-------------------------------------VDENSGF 113 (343)
Q Consensus 74 v~~v~~~-~~--~~l~~~s~dg~v~v~~~~~~~~~~-------------------------------------~~~~~~~ 113 (343)
|++++|+ ++ ..|++++.||.|++|++....... .......
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999 54 689999999999999987432210 0011346
Q ss_pred cccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE-------EcCCCccceEEEEeCC-C-CEEEEEeCCCcEEE
Q 019258 114 HVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRV-------YDGNGLVGFNCVKWAS-P-TEFVTGGFGYGLQW 182 (343)
Q Consensus 114 h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~-------~~~~~~~~v~~~~~~~-~-~~l~t~~~d~~i~i 182 (343)
|...|.+++|+ ++.|+++ .|++|++||+++....... +..|.. .|.+++|+| + ..|++++.|+.|++
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 99999999998 7888888 8999999999854334443 234544 799999999 5 89999999999999
Q ss_pred EEccccCCCCC----eeEEecccCCCC-----CcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 183 WDLRRAGSGGP----VLQFKGNFGSQG-----KASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 183 wd~~~~~~~~~----~~~~~~~~~~~~-----~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
||++. ++. +..+..+..... .+...|.+++|+|++.. +++++. |.|++||++....+....
T Consensus 254 wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~~----- 323 (447)
T 3dw8_B 254 CDMRA---SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVETY----- 323 (447)
T ss_dssp EETTT---CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCCE-----
T ss_pred EECcC---CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCcccccee-----
Confidence 99998 454 555665431000 00027999999998865 567888 999999998744444433
Q ss_pred cccccCCcccc---------------EEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-ccc--------
Q 019258 254 EAVTHSLSESE---------------VWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELL-------- 309 (343)
Q Consensus 254 ~~~~~~~h~~~---------------v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~-------- 309 (343)
..|... +..++|+|++. +|++++.||.|++|+...... .+.
T Consensus 324 -----~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~----------~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 324 -----QVHEYLRSKLCSLYENDCIFDKFECCWNGSDS----------VVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp -----ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS----------EEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred -----eccccccccccccccccccccceEEEECCCCC----------EEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 334321 34599999987 799999999999999753321 111
Q ss_pred -------------------------ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 -------------------------AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 -------------------------~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.....|..++|+| ++.+|++++.+ .+++|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~-~~~~~~ 443 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTN-NLYIFQ 443 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSS-CEEEEE
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECC-CCCEEEEEecc-eeeeec
Confidence 1124688899999 56888888766 588876
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=247.74 Aligned_cols=275 Identities=10% Similarity=0.078 Sum_probs=220.0
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
|...|.+++|+| ++++|++|+.|+. |++|+.... .......|.+.|.+++|+ ++.+|++++.||.|+
T Consensus 107 ~~~~v~~~~~s~----~~~~l~~~~~dg~-----i~i~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 107 TTNQVTCLAWSH----DGNSIVTGVENGE-----LRLWNKTGA---LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp -CBCEEEEEECT----TSSEEEEEETTSC-----EEEEETTSC---EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCCceEEEEEcC----CCCEEEEEeCCCe-----EEEEeCCCC---eeeeccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 466899999999 8999999999865 779994321 112233588899999999 888999999999999
Q ss_pred EEEccCceeeeeeccCCccccC---------------eEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 96 VLSSAMQVLLSVDENSGFHVGP---------------ISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
+|++...+.+.... .|... +.++.|+ +..+++++.||.|++||+.+++ ....+..+.. .
T Consensus 175 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~-~ 249 (425)
T 1r5m_A 175 LWNVISGTVMQHFE---LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-PTGKLIGHHG-P 249 (425)
T ss_dssp EEETTTTEEEEEEC---CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-CSEEECCCSS-C
T ss_pred EEECCCCcEEEEee---ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-eeeeeccCCC-c
Confidence 99998665554332 23333 8888888 8889999999999999999875 4444455555 7
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 160 FNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
+.+++|+| +..+++++.|+.|++||++. .+++..+..+. ..+.+++|+|++ ++++++.||.|++||+
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~--~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGN---GNSQNCFYGHS-------QSIVSASWVGDD--KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSS---BSCSEEECCCS-------SCEEEEEEETTT--EEEEEETTSEEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCC---CccceEecCCC-------ccEEEEEECCCC--EEEEEeCCCcEEEEEC
Confidence 99999999 78999999999999999988 67777776554 789999999987 6789999999999999
Q ss_pred cCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-------------
Q 019258 239 RWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP------------- 305 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~------------- 305 (343)
++...... . ..|...|.+++|+|++. .|++++.||.|++|+.....
T Consensus 318 ~~~~~~~~-~----------~~~~~~i~~~~~s~~~~----------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 376 (425)
T 1r5m_A 318 KQNTLLAL-S----------IVDGVPIFAGRISQDGQ----------KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376 (425)
T ss_dssp TTTEEEEE-E----------ECTTCCEEEEEECTTSS----------EEEEEETTSCEEEEECHHHHC------------
T ss_pred CCCcEeEe-c----------ccCCccEEEEEEcCCCC----------EEEEEECCCeEEEEECCCCccceeeeecccccc
Confidence 88554433 3 45788999999999987 79999999999999974221
Q ss_pred ---------ccccccc-c-ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 306 ---------FELLAEP-C-AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 306 ---------~~~~~~~-~-~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
..+..+. . +|.++.|+| ++.+|+++++++.|++|+-
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 377 LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp --CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEEC
T ss_pred cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEee
Confidence 2222222 3 899999999 5689999999999999974
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=232.20 Aligned_cols=275 Identities=17% Similarity=0.183 Sum_probs=215.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
..+.|+|+| ++ +|++| .|++ |++||+........+....|...|++++|+ ++++|++|+.||.|++|+
T Consensus 27 y~~~l~WS~----~~-~lAvg-~D~t-----V~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 27 YLNLVDWSS----GN-VLAVA-LDNS-----VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 95 (318)
T ss_dssp TCBCEEECT----TS-EEEEE-ETTE-----EEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceEEEECC----CC-EEEEE-eCCE-----EEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEee
Confidence 468899999 43 66665 5754 779999654333333334677889999999 889999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d 177 (343)
+...+.+.... .|...+.++.+.+..+++++.++.+++|+.............|.. .+..+.+.+ +..+++++.|
T Consensus 96 ~~~~~~~~~~~---~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 96 VQQQKRLRNMT---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp TTTTEEEEEEE---CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETT
T ss_pred cCCceeEEEec---CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC-ceEEEEEcCCCCEEEEEecC
Confidence 99776554443 688899998888999999999999999999886556666666665 799999999 8899999999
Q ss_pred CcEEEEEccccCCCCCe----eEEecccCCCCCcccCeEEEEEcCCCCeEE--EEEecCCcEEEEEccCCceeeeeecCC
Q 019258 178 YGLQWWDLRRAGSGGPV----LQFKGNFGSQGKASGMIHSVDIHPSRKHTC--LAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~--~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+.|++||++. ++.. .....+. +.|.+++++|.+..++ ++|+.+++|++||.+.........
T Consensus 172 ~~i~iwd~~~---~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--- 238 (318)
T 4ggc_A 172 NLVNVWPSAP---GEGGWVPLQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--- 238 (318)
T ss_dssp SCEEEEESSC---BTTBSCCSEEECCCC-------SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE---
T ss_pred cceeEEECCC---CcccccceeeecccC-------CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc---
Confidence 9999999987 3322 1222222 7799999999887665 456789999999998865544433
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE--ecCCeEEEEecCCC--cccccccccccceeeecCCCCCe
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC--SEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~--s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~ 327 (343)
+...+..+.|+|.+. .++++ +.||.|++|+.... ..++..+..+|++++|+| ++.+
T Consensus 239 ---------~~~~v~~~~~~~~~~----------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~ 298 (318)
T 4ggc_A 239 ---------AHSQVCSILWSPHYK----------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 298 (318)
T ss_dssp ---------CSSCEEEEEEETTTT----------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSC
T ss_pred ---------ceeeeeeeeeccccc----------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCE
Confidence 677899999999887 45544 48999999997532 344445568899999999 6799
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
|++|++|+.|++|+-
T Consensus 299 l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 299 VASAAADETLRLWRC 313 (318)
T ss_dssp EEEEETTTEEEEECC
T ss_pred EEEEecCCeEEEEEC
Confidence 999999999999974
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=248.34 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=221.0
Q ss_pred ccCCcccceeeEEecCCCC--CC----CCeEEEEeecCCCCCCceeeeeC--CCC-----------------------CC
Q 019258 13 HRFPQSKYIDAVRWLPPLS--PL----SKLAVLAIYDTDADSPSLETHSI--SLP-----------------------AS 61 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~--~~----~~~l~t~s~D~~~~~~~l~~w~~--~~~-----------------------~~ 61 (343)
+.+...-+..++.|.|... .+ ..+++.|++... ..-.|.+.++ +.. ..
T Consensus 40 ~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~ 118 (430)
T 2xyi_A 40 MTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGK 118 (430)
T ss_dssp EEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEEEEEEEC--------------------------C
T ss_pred hhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEEEEEECCCCccccccccccccccccccccCCCCc
Confidence 3333444578999999521 11 156888887543 2223445543 110 01
Q ss_pred CCCCccCCCCCCeeEEEcc-C-CCeEEEEcCCCcEEEEEccCc-------eeeeeeccCCccccCeEEEEec--CC-EEE
Q 019258 62 LTPHSQWTPPTRISSLSTS-H-QSLVAASTLSGSLHVLSSAMQ-------VLLSVDENSGFHVGPISGVDLT--GS-ECV 129 (343)
Q Consensus 62 ~~~~~~~~~~~~v~~v~~~-~-~~~l~~~s~dg~v~v~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~--~~-~~~ 129 (343)
.+....+.|.+.|++++|+ + +.+|++++.+|.|++|++... ...........|...|++++|+ +. .|+
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 1224456789999999999 3 578999999999999999741 0011112223688999999998 55 899
Q ss_pred EEeCCCcEEEEECCCCce---E---EEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 130 SVGEDGRVNLVSVIGGGE---F---KRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 130 s~s~dg~v~~wd~~~~~~---~---~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
+++.||+|++||+..+.. . ...+..|.. .|.+++|+| ...|++++.|+.|++||++......++..+..+.
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 999999999999987321 1 234445555 799999998 6788899999999999999811125666666554
Q ss_pred CCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCC
Q 019258 202 GSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
..|++++|+|++.+++++|+.||.|++||++....+.... ..|...|.+++|+|++..
T Consensus 278 -------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----------~~h~~~v~~i~~sp~~~~----- 335 (430)
T 2xyi_A 278 -------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----------ESHKDEIFQVQWSPHNET----- 335 (430)
T ss_dssp -------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------ECCSSCEEEEEECSSCTT-----
T ss_pred -------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe----------ecCCCCEEEEEECCCCCC-----
Confidence 7799999999998889999999999999999866666665 578999999999999875
Q ss_pred CCccceEEEecCCeEEEEecCCC---------------ccccc-ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 282 SRVLPAMFCSEDGILAVVEQGEE---------------PFELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 282 ~~~~~l~s~s~dg~i~~~~~~~~---------------~~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+++++.||.|++|+.... ..... .+...|+++.|+|+....++++++++.|++|+.
T Consensus 336 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 336 ----ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ----EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ----EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 7999999999999997541 11111 224579999999954238999999999999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=243.92 Aligned_cols=281 Identities=16% Similarity=0.221 Sum_probs=218.5
Q ss_pred ccCCcccceeeEEecCCCCCCCC-eEEEEeecCCCCCCceeeeeC----CCCCC------CCCC-ccC-------CCCCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSK-LAVLAIYDTDADSPSLETHSI----SLPAS------LTPH-SQW-------TPPTR 73 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~-~l~t~s~D~~~~~~~l~~w~~----~~~~~------~~~~-~~~-------~~~~~ 73 (343)
....|...|.+++|+| +++ +|++|+.|+. +++|++ ..... ...+ ..+ .|.+.
T Consensus 40 ~~~~~~~~v~~~~~s~----~~~~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNP----LDESILAYGEKNSV-----ARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp EEEEECSCCSEEEECS----SCTTEEEEEETBTE-----EEEEEEEEC------CEEEEEEEEEECCCCCC------CBC
T ss_pred eeeeccCceEEEEECC----CCCcEEEEecCCce-----EEEEEEecccCCccccccccccccccccccccccccCCCCc
Confidence 3344568999999999 777 9999999865 779999 54331 1000 001 14669
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
|.+++|+ ++.+|++++.||.|++|+.. .+.+... ..|..+|.++.|+ +..+++++.||.|++||+.+++ ...
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~ 185 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQ 185 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEE
Confidence 9999999 88999999999999999944 3333222 3588999999998 8899999999999999999885 444
Q ss_pred EEcCCCccc---------------eEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEE
Q 019258 151 VYDGNGLVG---------------FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 151 ~~~~~~~~~---------------v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
.+..+.. . +.++.|++...+++++.|+.|++||++. .+++..+..+. ..|.+++
T Consensus 186 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~---~~~~~~~~~~~-------~~i~~~~ 254 (425)
T 1r5m_A 186 HFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE---KTPTGKLIGHH-------GPISVLE 254 (425)
T ss_dssp EECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTC---SSCSEEECCCS-------SCEEEEE
T ss_pred Eeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCC---CceeeeeccCC-------CceEEEE
Confidence 4444443 3 8889999988899999999999999998 67777777655 7899999
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~ 295 (343)
|+|++. ++++++.||.|++||++..... ... ..|...|.+++|+|++ .+++++.||.
T Consensus 255 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~----------~~~~~~i~~~~~~~~~-----------~l~~~~~d~~ 311 (425)
T 1r5m_A 255 FNDTNK-LLLSASDDGTLRIWHGGNGNSQ-NCF----------YGHSQSIVSASWVGDD-----------KVISCSMDGS 311 (425)
T ss_dssp EETTTT-EEEEEETTSCEEEECSSSBSCS-EEE----------CCCSSCEEEEEEETTT-----------EEEEEETTSE
T ss_pred ECCCCC-EEEEEcCCCEEEEEECCCCccc-eEe----------cCCCccEEEEEECCCC-----------EEEEEeCCCc
Confidence 999886 5678999999999999875443 333 4688999999999975 4899999999
Q ss_pred EEEEecCCC-c-ccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 296 LAVVEQGEE-P-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 296 i~~~~~~~~-~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|++|+.... . ..+..+..++.++.++| ++.+|++++.++.|++|+-
T Consensus 312 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 312 VRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred EEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence 999997533 2 22333457899999999 5799999999999999973
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=228.26 Aligned_cols=239 Identities=15% Similarity=0.142 Sum_probs=193.3
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
..|.+.|++++|+ ++++|++++.||.|++|++...+..... ..|...|.++.|+ ++.+++++.|+.|++||+++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh---ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 4688999999999 8899999999999999999765544333 3689999999998 88999999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ ....+..|.. .|.+++|+| ++.+++++.|+.|++||++. ++.+..+..+. .+|.+++|+|++. +
T Consensus 97 ~~-~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~-------~~v~~~~~~~~~~-~ 163 (312)
T 4ery_A 97 GK-CLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVKT---GKCLKTLPAHS-------DPVSAVHFNRDGS-L 163 (312)
T ss_dssp CC-EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECTTSS-E
T ss_pred Cc-EEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CEEEEEecCCC-------CcEEEEEEcCCCC-E
Confidence 85 5555556665 799999999 88999999999999999998 67777777655 7899999999876 5
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+.||.|++||+++.+....+. ..+...+..++|+|++. +|++++.||.|++|+...
T Consensus 164 l~~~~~d~~i~~wd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----------~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASGQCLKTLI----------DDDNPPVSFVKFSPNGK----------YILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC----------CSSCCCEEEEEECTTSS----------EEEEEETTTEEEEEETTT
T ss_pred EEEEeCCCcEEEEECCCCceeeEEe----------ccCCCceEEEEECCCCC----------EEEEEcCCCeEEEEECCC
Confidence 6899999999999999866555544 45677899999999987 799999999999999754
Q ss_pred Cc-c-cccccccc--cceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 EP-F-ELLAEPCA--INSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~~-~-~~~~~~~~--i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. . .+..+... .....+++.++.+|++|++++.|++|+-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 32 2 22222221 2223344335689999999999999973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=230.90 Aligned_cols=250 Identities=14% Similarity=0.155 Sum_probs=188.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++.++++|+.|+. +++|++...... .....|.+.|.+++|+ ++.+|++++.|+.|
T Consensus 74 ~h~~~V~~~~~~~----~~~~l~s~s~D~~-----v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 74 GHNHFVSDLALSQ----ENCFAISSSWDKT-----LRLWDLRTGTTY--KRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp CCSSCEEEEEECS----STTEEEEEETTSE-----EEEEETTSSCEE--EEEECCCSCEEEEEECSSTTEEEEEETTSCE
T ss_pred cCCCceEEEEECC----CCCEEEEEcCCCc-----EEEEECCCCcEE--EEEcCCCCcEEEEEECCCCCEEEEEcCCCEE
Confidence 5778899999999 8899999999975 779999653221 2234688999999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--C----------CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--G----------SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNC 162 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~----------~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 162 (343)
++|++....... ......|...|.++.|+ + ..+++++.||+|++||.. . .....+..|.. .|.+
T Consensus 143 ~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~~~~h~~-~v~~ 218 (343)
T 2xzm_R 143 KLWNILGECKFS-SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRYTFKAHES-NVNH 218 (343)
T ss_dssp EEEESSSCEEEE-CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEEEEECCSS-CEEE
T ss_pred EEEeccCCceee-eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeEEEcCccc-cceE
Confidence 999997433222 22223688899999998 3 689999999999999954 3 34555556665 8999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|+| +..|++++.|+.|++||++. ...+...+. +. ..|.+++|+|++. ++ +++.|+.|++||+.+.
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~--~~~~~~~~~-~~-------~~v~~v~~sp~~~-~l-a~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILN--LTYPQREFD-AG-------STINQIAFNPKLQ-WV-AVGTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSC--CSSCSEEEE-CS-------SCEEEEEECSSSC-EE-EEEESSCEEEEESSSC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCC--Ccccceeec-CC-------CcEEEEEECCCCC-EE-EEECCCCEEEEEeCCC
Confidence 99999 88999999999999999965 234444443 22 5699999999875 44 4567889999999764
Q ss_pred ceee-eeecCC-CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 242 QQSI-VLSGVG-TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 242 ~~~~-~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.... ...... ........+|...|.+++|+|++. .|++|+.||.|++|+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~----------~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK----------KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC----------CEEEEETTSEEEEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC----------eEEEecCCceEEEEEEE
Confidence 3321 111000 000001136888999999999988 79999999999999863
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-30 Score=236.73 Aligned_cols=268 Identities=14% Similarity=0.167 Sum_probs=213.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.+...|.++.+ +++++++|+.|+. |++|++...... .....|.+.|.+++| +++.|++|+.||.|+
T Consensus 131 ~~~~~v~~~~~------d~~~l~~g~~dg~-----i~iwd~~~~~~~--~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~ 196 (435)
T 1p22_A 131 ETSKGVYCLQY------DDQKIVSGLRDNT-----IKIWDKNTLECK--RILTGHTGSVLCLQY-DERVIITGSSDSTVR 196 (435)
T ss_dssp SSCCCEEEEEC------CSSEEEEEESSSC-----EEEEESSSCCEE--EEECCCSSCEEEEEC-CSSEEEEEETTSCEE
T ss_pred CCCCcEEEEEE------CCCEEEEEeCCCe-----EEEEeCCCCeEE--EEEcCCCCcEEEEEE-CCCEEEEEcCCCeEE
Confidence 34556777765 5788999999975 779999543221 222358899999999 588999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceE--EEEEcCCCccceEEEEeCCCCEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEF--KRVYDGNGLVGFNCVKWASPTEFVT 173 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~t 173 (343)
+|++...+.+... ..|...|.++.++++.+++++.||.|++||+.++... ......|.. .|.+++| .++.+++
T Consensus 197 vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~l~s 271 (435)
T 1p22_A 197 VWDVNTGEMLNTL---IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDF-DDKYIVS 271 (435)
T ss_dssp EEESSSCCEEEEE---CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEE-ETTEEEE
T ss_pred EEECCCCcEEEEE---cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC-cEEEEEe-CCCEEEE
Confidence 9999866554433 3689999999999889999999999999999876432 245556665 8999998 4678999
Q ss_pred EeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 174 GGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
++.|+.|++||++. ++.+..+..+. ..|.++++++ .++++|+.||.|++||++++..... .
T Consensus 272 ~~~dg~i~vwd~~~---~~~~~~~~~~~-------~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~-~----- 332 (435)
T 1p22_A 272 ASGDRTIKVWNTST---CEFVRTLNGHK-------RGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRV-L----- 332 (435)
T ss_dssp EETTSEEEEEETTT---CCEEEEEECCS-------SCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEE-E-----
T ss_pred EeCCCeEEEEECCc---CcEEEEEcCCC-------CcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEE-E-----
Confidence 99999999999998 77888887665 7799999964 3678999999999999998654433 3
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-----------cccccccccccceeeecC
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-----------PFELLAEPCAINSFDIDP 322 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-----------~~~~~~~~~~i~s~~~~~ 322 (343)
..|...|.+++|+ +. .+++++.||.|++|+.... ...+..+..+|.++++++
T Consensus 333 -----~~h~~~v~~~~~~--~~----------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 395 (435)
T 1p22_A 333 -----EGHEELVRCIRFD--NK----------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395 (435)
T ss_dssp -----CCCSSCEEEEECC--SS----------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred -----eCCcCcEEEEEec--CC----------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCC
Confidence 5689999999993 33 7999999999999996321 223334457899999964
Q ss_pred CCCCeeEEccCCceEEEEe
Q 019258 323 QNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 323 ~~~~~l~~~~~~~~i~~~~ 341 (343)
.+|++|++|+.|++|+
T Consensus 396 ---~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 396 ---FQIVSSSHDDTILIWD 411 (435)
T ss_dssp ---SCEEECCSSSEEEEEC
T ss_pred ---CEEEEEeCCCEEEEEE
Confidence 8899999999999997
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=234.91 Aligned_cols=250 Identities=13% Similarity=0.211 Sum_probs=193.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-C--CCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-H--QSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~--~~~l~~~s~dg 92 (343)
.|...|.+++|+| ++++|++|+.|+. |++|++.............|.+.|.+++|+ + +.+|++++.||
T Consensus 9 ~h~~~v~~~~~s~----~~~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 9 AHNELIHDAVLDY----YGKRLATCSSDKT-----IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ECCCCEEEEEECS----SSSEEEEEETTSC-----EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCcccEEEEEEcC----CCCEEEEEECCCc-----EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 4888999999999 8999999999965 779999532221112234688999999997 4 79999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|++|++...+...... ...|...|.++.|+ +..+++++.||.|++||+++... ....+..+.. .|.+++|+|
T Consensus 80 ~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~v~~~~~~~ 157 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAP 157 (379)
T ss_dssp CEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT-CEEEEEECC
T ss_pred EEEEEEcCCCceeEeee-ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC-ceEEEEEcC
Confidence 99999998654222222 23588999999998 56899999999999999987532 2233344554 799999998
Q ss_pred --------------CCEEEEEeCCCcEEEEEccccCCCCCe----eEEecccCCCCCcccCeEEEEEcCCC--CeEEEEE
Q 019258 168 --------------PTEFVTGGFGYGLQWWDLRRAGSGGPV----LQFKGNFGSQGKASGMIHSVDIHPSR--KHTCLAG 227 (343)
Q Consensus 168 --------------~~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~v~~~p~~--~~~~~sg 227 (343)
+..+++++.|+.|++||++. .... ..+..|. .+|.+++|+|++ ..+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVLESTLEGHS-------DWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEET---TTTEEEEEEEECCCS-------SCEEEEEECCCCSSSEEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecC---CCcceeeEEEEeccc-------CcEeEEEECCCCCCCCeEEEE
Confidence 67899999999999999987 4433 2344343 789999999994 4678899
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+.||.|++||++....+...... ....|...|++++|+|++. +|++++.||.|++|+..
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g~----------~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLL------KEEKFPDVLWRASWSLSGN----------VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEES------SSSCCSSCEEEEEECSSSC----------CEEEEESSSSEEEEEEE
T ss_pred eCCCEEEEEeCCCCCccceeeee------ccccCCCcEEEEEEcCCCC----------EEEEecCCCcEEEEeCC
Confidence 99999999999886433221100 0145888999999999988 79999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=235.63 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=186.3
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|.+++|+| ++++|++|+.|+. |++|++...... .....|...|.+++|+ ++..|++++.|++|++||
T Consensus 125 ~v~~v~~s~----dg~~l~s~~~d~~-----i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 125 YIRSVCFSP----DGKFLATGAEDRL-----IRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp BEEEEEECT----TSSEEEEEETTSC-----EEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEECC----CCCEEEEEcCCCe-----EEEEECCCCcEE--EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 499999999 8999999999975 779999653211 2234688999999999 889999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEE------cCCCccceEEEEeCC-C
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVY------DGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~------~~~~~~~v~~~~~~~-~ 168 (343)
+...+..... .|...+.++.++ +..+++++.||+|++||++++.....+. ..|.. .|.+++|+| +
T Consensus 194 ~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g 268 (393)
T 1erj_A 194 LRTGQCSLTL----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDG 268 (393)
T ss_dssp TTTTEEEEEE----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTS
T ss_pred CCCCeeEEEE----EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCC
Confidence 9866544333 255678999987 7899999999999999999875333321 23444 799999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCC---------CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGS---------GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
..+++++.|++|++||++.... +.....+.+|. ..|.+++++|++. ++++|+.||.|++||++
T Consensus 269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK-------DFVLSVATTQNDE-YILSGSKDRGVLFWDKK 340 (393)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCS-------SCEEEEEECGGGC-EEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc-------CcEEEEEECCCCC-EEEEEeCCCeEEEEECC
Confidence 8999999999999999976110 11223344444 7799999999876 56899999999999998
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++.. ...+ .+|...|.+++|++.... ++.++ .|++||.||+|++|+..
T Consensus 341 ~~~~-~~~l----------~~h~~~v~~v~~~~~~~~-~p~~~---~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 341 SGNP-LLML----------QGHRNSVISVAVANGSSL-GPEYN---VFATGSGDCKARIWKYK 388 (393)
T ss_dssp TCCE-EEEE----------ECCSSCEEEEEECSSCTT-CTTCE---EEEEEETTSEEEEEEEE
T ss_pred CCeE-EEEE----------CCCCCCEEEEEecCCcCc-CCCCC---EEEEECCCCcEEECccc
Confidence 8554 3444 579999999999874210 00011 79999999999999874
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=230.75 Aligned_cols=292 Identities=12% Similarity=0.123 Sum_probs=212.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-----------CCCCCCeeEEEcc--CC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-----------WTPPTRISSLSTS--HQ 82 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-----------~~~~~~v~~v~~~--~~ 82 (343)
.|...|.+++|+| .++++|++|+.|+. |++|++........... ..|.+.|.+++|+ ++
T Consensus 41 ~h~~~v~~~~~s~---~~~~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 41 IHGGGINTLDIEP---VEGRYMLSGGSDGV-----IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CCSSCEEEEEECT---TTCCEEEEEETTSC-----EEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred ccCCcEEEEEEec---CCCCEEEEEcCCCe-----EEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 4889999999999 56889999999975 77999965432221111 1388999999999 56
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
.+|++++.||.|++|++...+...... +...+.++.+. +..+++++.||.|++||++++. ....+..|..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~ 187 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQ 187 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCS
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCC
Confidence 789999999999999998766554442 56788888887 3489999999999999999875 4455555665
Q ss_pred cceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCC--------CCCcccCeEEEEEcCCCCeEEEEE
Q 019258 158 VGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS--------QGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 158 ~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.|.+++|+| +. .+++++.|+.|++||++. ...++..+..+... ...+...|.+++|+|++. .+++|
T Consensus 188 -~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 263 (408)
T 4a11_B 188 -EILAVSWSPRYDYILATASADSRVKLWDVRR--ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTV 263 (408)
T ss_dssp -CEEEEEECSSCTTEEEEEETTSCEEEEETTC--SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEE
T ss_pred -cEEEEEECCCCCcEEEEEcCCCcEEEEECCC--CCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEe
Confidence 799999999 45 589999999999999988 33344444221100 011237899999999876 56789
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--c
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--P 305 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~ 305 (343)
+.||.|++||+++.+......... ...........+...... .+++++.|+.|++|+.... .
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKV-------CNNSKKGLKFTVSCGCSS---------EFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCC-------CCCCSSCCCCEECCSSSS---------CEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCeEEEEECCCCccceeccccc-------cccccccceeEEecCCCc---------eEEEEecCCEEEEEECcCCcce
Confidence 999999999998865443322100 001111112222222233 6888899999999997532 2
Q ss_pred ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 306 FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 306 ~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+..+..+|.+++++| ++.+|++|++|+.|++|+
T Consensus 328 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred eeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEe
Confidence 33334567899999999 579999999999999997
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=240.23 Aligned_cols=255 Identities=14% Similarity=0.178 Sum_probs=200.2
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-------CCCCC-CccCCCCCCeeEEEcc-CC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-------ASLTP-HSQWTPPTRISSLSTS-HQ 82 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-------~~~~~-~~~~~~~~~v~~v~~~-~~ 82 (343)
...++|...|++++|+| .++.+|++++.|+. |++|++... ....+ .....|.+.|.+++|+ .+
T Consensus 122 ~~~~~h~~~v~~l~~~p---~~~~~lat~~~dg~-----V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMP---QNACVIATKTPSSD-----VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEEEESSCCSEEEEET---TEEEEEEEECSSSC-----EEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred EEEEcCCCcEEEEEECC---CCCcEEEEECCCCc-----EEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 45678999999999999 33689999998865 779999541 11222 2234688899999999 55
Q ss_pred C-eEEEEcCCCcEEEEEccCce----eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc--eEEEEE
Q 019258 83 S-LVAASTLSGSLHVLSSAMQV----LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG--EFKRVY 152 (343)
Q Consensus 83 ~-~l~~~s~dg~v~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~--~~~~~~ 152 (343)
. +|++|+.||.|++|++.... .+........|...|.+++|+ +..|++++.||.|++||+++.. .....+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 99999999999999998521 111122233689999999997 6789999999999999998752 233344
Q ss_pred cCCCccceEEEEeCC-C-CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 153 DGNGLVGFNCVKWAS-P-TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 153 ~~~~~~~v~~~~~~~-~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
..|.. .|.+++|+| . ..+++++.|+.|++||++. ...++..+..|. ..|.+++|+|++..++++++.|
T Consensus 274 ~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~--~~~~~~~~~~h~-------~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 274 DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHK-------DEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC--TTSCSEEEECCS-------SCEEEEEECSSCTTEEEEEETT
T ss_pred ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC--CCCCeEEeecCC-------CCEEEEEECCCCCCEEEEEeCC
Confidence 45555 799999999 4 4788999999999999998 456677777665 7899999999998889999999
Q ss_pred CcEEEEEccCCc-------------eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 231 GTVFAWDLRWQQ-------------QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 231 g~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|.|++||++... ...... .+|...|.+++|+|+++. .+++++.||.|+
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~p~~~~---------~l~s~s~dg~i~ 404 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH----------GGHTAKISDFSWNPNEPW---------IICSVSEDNIMQ 404 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC----------CCCSSCEEEEEECSSSTT---------EEEEEETTSEEE
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEc----------CCCCCCceEEEECCCCCC---------EEEEEECCCCEE
Confidence 999999998732 122222 578899999999999886 689999999999
Q ss_pred EEecCC
Q 019258 298 VVEQGE 303 (343)
Q Consensus 298 ~~~~~~ 303 (343)
+|+...
T Consensus 405 iw~~~~ 410 (430)
T 2xyi_A 405 VWQMAE 410 (430)
T ss_dssp EEEECH
T ss_pred EeEccc
Confidence 999754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-30 Score=236.95 Aligned_cols=272 Identities=13% Similarity=0.077 Sum_probs=210.2
Q ss_pred Ccccc-eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEccCCCeEEEEcCCCc
Q 019258 16 PQSKY-IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTSHQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~-i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~ 93 (343)
.|... +.++.+ ++++|++|+.|+. |++|++.... ++.. ..|.+.|.+++|+.+..|++|+.||+
T Consensus 119 ~h~~~v~~~~~~------~~~~l~sgs~dg~-----i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~ 184 (464)
T 3v7d_B 119 GHMTSVITCLQF------EDNYVITGADDKM-----IRVYDSINKK---FLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184 (464)
T ss_dssp CCSSSCEEEEEE------ETTEEEEEETTSC-----EEEEETTTTE---EEEEECCCSSCEEEEEECSTTEEEEEETTSC
T ss_pred CCCCCcEEEEEE------CCCEEEEEcCCCc-----EEEEECCCCc---EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCC
Confidence 45555 455555 3468999999975 7799995532 2222 36899999999995559999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceE---------------------
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEF--------------------- 148 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~--------------------- 148 (343)
|++|++...+.+... ..|.+.|.++++. +..+++++.||+|++||+++....
T Consensus 185 i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp EEEEETTTTEEEEEE---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred EEEEECCCCcEEEEE---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 999999876655443 3699999999987 478999999999999999875322
Q ss_pred -EEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 -KRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 -~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
......|.. .+.++... ++.+++++.|+.|++||+++ ++++..+..+. ..|.+++|+|++. .+++|
T Consensus 262 ~~~~~~~~~~-~v~~~~~~-~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~-------~~v~~~~~~~~~~-~l~sg 328 (464)
T 3v7d_B 262 FVGVLRGHMA-SVRTVSGH-GNIVVSGSYDNTLIVWDVAQ---MKCLYILSGHT-------DRIYSTIYDHERK-RCISA 328 (464)
T ss_dssp EEEEECCCSS-CEEEEEEE-TTEEEEEETTSCEEEEETTT---TEEEEEECCCS-------SCEEEEEEETTTT-EEEEE
T ss_pred EEEEccCccc-eEEEEcCC-CCEEEEEeCCCeEEEEECCC---CcEEEEecCCC-------CCEEEEEEcCCCC-EEEEE
Confidence 334444544 67777432 77899999999999999988 77777777665 7899999999876 56799
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE 307 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~ 307 (343)
+.||.|++||+++++.. ... ..|...|.++.|++ . .+++++.||.|++|+.......
T Consensus 329 ~~dg~i~vwd~~~~~~~-~~~----------~~h~~~v~~~~~~~--~----------~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELM-YTL----------QGHTALVGLLRLSD--K----------FLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp ETTSCEEEEETTTTEEE-EEE----------CCCSSCEEEEEECS--S----------EEEEEETTSEEEEEETTTCCEE
T ss_pred eCCCcEEEEECCCCcEE-EEE----------eCCCCcEEEEEEcC--C----------EEEEEeCCCcEEEEECCCCcee
Confidence 99999999999985543 334 56899999999983 3 7999999999999998654332
Q ss_pred cc-ccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LL-AEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. .....+..+.+++ ++.+|++|+ ++.|++|+-
T Consensus 386 ~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 386 FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEET
T ss_pred eeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEEC
Confidence 22 2345677778887 558888888 789999973
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-30 Score=236.26 Aligned_cols=272 Identities=11% Similarity=0.101 Sum_probs=212.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc---CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS---HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~---~~~~l~~~s~d 91 (343)
.|...|.+++|+| ++ .+++|+.|+. +++|++.... +... ..|.+.|.+++|+ ++.+|++++.|
T Consensus 160 ~h~~~V~~l~~~~----~~-~l~s~s~dg~-----i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 160 GHDGGVWALKYAH----GG-ILVSGSTDRT-----VRVWDIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp CCSSCEEEEEECS----TT-EEEEEETTSC-----EEEEETTTTE---EEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred CCCcCEEEEEEcC----CC-EEEEEeCCCC-----EEEEECCCCc---EEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence 4888999999998 44 8999999975 7799996532 2233 3588999999998 55789999999
Q ss_pred CcEEEEEccCceeee--------------------eeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 92 GSLHVLSSAMQVLLS--------------------VDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 92 g~v~v~~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
|.|++|++....... .......|...|.++...++.+++++.||.|++||+++++ ....
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~ 305 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYI 305 (464)
T ss_dssp SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence 999999997443221 1122346888999998889999999999999999999985 5555
Q ss_pred EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS 230 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d 230 (343)
+..|.. .+.+++|++ +..+++++.|+.|++||++. ++++..+..|. ..|.++++++ ..+++|+.|
T Consensus 306 ~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~-------~~v~~~~~~~---~~l~s~s~d 371 (464)
T 3v7d_B 306 LSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN---GELMYTLQGHT-------ALVGLLRLSD---KFLVSAAAD 371 (464)
T ss_dssp ECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT---TEEEEEECCCS-------SCEEEEEECS---SEEEEEETT
T ss_pred ecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CcEEEEEeCCC-------CcEEEEEEcC---CEEEEEeCC
Confidence 566665 899999999 88999999999999999998 77777887665 7899999985 367899999
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc--cc-
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP--FE- 307 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~--~~- 307 (343)
|.|++||+++........ |...+..++|+|++. .+++++ ||.|++|+..... ..
T Consensus 372 g~v~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~----------~l~~~~-dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYH------------HTNLSAITTFYVSDN----------ILVSGS-ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp SEEEEEETTTCCEEEEEE------------CTTCCCEEEEEECSS----------EEEEEE-TTEEEEEETTTCCEEESC
T ss_pred CcEEEEECCCCceeeeec------------CCCCccEEEEEeCCC----------EEEEec-CCeEEEEECCCCcEEehh
Confidence 999999999866544433 566778899999877 677777 9999999975432 22
Q ss_pred ccccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 308 LLAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 308 ~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
+..+..+|.++++++ ...++++++++.++++
T Consensus 429 ~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 429 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TTTTCSEEEEEEEET--TEEEEEEEETTEEEEE
T ss_pred hccCCCcEEEEEecC--CEEEEEEEeCCeEEEE
Confidence 334467899999986 2555555666655543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=233.57 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=210.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc-CCC-eEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS-HQS-LVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~-~~~-~l~~~s~dg 92 (343)
+|...|.+++|+| ++++|++++.|+. |++|++.... .........|...|.+++|+ ++. +|++++.||
T Consensus 9 ~h~~~v~~~~~s~----~~~~l~~~~~d~~-----v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 9 APKDYISDIKIIP----SKSLLLITSWDGS-----LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CCSSCEEEEEEEG----GGTEEEEEETTSE-----EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCCCcEEEEEEcC----CCCEEEEEcCCCe-----EEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 6889999999999 8899999999965 7799995533 11134445788999999999 888 999999999
Q ss_pred cEEEEEc-cCceeeeeeccCCc--cccCeEEEEec-CCEEEEEeCCCcEEEEECCC---------CceEEEEEcCCCccc
Q 019258 93 SLHVLSS-AMQVLLSVDENSGF--HVGPISGVDLT-GSECVSVGEDGRVNLVSVIG---------GGEFKRVYDGNGLVG 159 (343)
Q Consensus 93 ~v~v~~~-~~~~~~~~~~~~~~--h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~---------~~~~~~~~~~~~~~~ 159 (343)
.|++|++ ...+... ... |...|.++.|+ +..+++++.|+.|++||+++ .+ +...+. +.. .
T Consensus 80 ~i~~wd~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~-~ 152 (342)
T 1yfq_A 80 EILKVDLIGSPSFQA----LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKN-K 152 (342)
T ss_dssp CEEEECSSSSSSEEE----CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCC-C
T ss_pred eEEEEEeccCCceEe----ccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCC-c
Confidence 9999999 7554322 235 89999999999 89999999999999999876 42 222333 333 7
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEEccccCCC-CCeeEEe-cccCCCCCcccCeEEEEEcC-CCCeEEEEEecCCcEEEE
Q 019258 160 FNCVKWASPTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFK-GNFGSQGKASGMIHSVDIHP-SRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 160 v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~~~~~~~~~i~~v~~~p-~~~~~~~sg~~dg~v~iw 236 (343)
+.+++|++.. +++++.|+.|++||++. .. ....... .+. ..+.+++|+| ++. ++++|+.||.|++|
T Consensus 153 v~~~~~~~~~-l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~-~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNNSQVQWFRLPL--CEDDNGTIEESGLK-------YQIRDVALLPKEQE-GYACSSIDGRVAVE 221 (342)
T ss_dssp EEEEEECSSE-EEEEESTTEEEEEESSC--CTTCCCEEEECSCS-------SCEEEEEECSGGGC-EEEEEETTSEEEEE
T ss_pred eEEEEecCCc-EEEEeCCCeEEEEECCc--cccccceeeecCCC-------CceeEEEECCCCCC-EEEEEecCCcEEEE
Confidence 9999999855 99999999999999975 11 2222222 222 6799999999 875 56899999999999
Q ss_pred EccCC-----ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccc
Q 019258 237 DLRWQ-----QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELL 309 (343)
Q Consensus 237 d~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~ 309 (343)
|++.. ..+......+.. ......|...|.+++|+|++. +|++++.||.|++|+.... ...+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~----------~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRL-NLKDTNLAYPVNSIEFSPRHK----------FLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCC-CTTCCSSCCCEEEEEECTTTC----------CEEEEETTSCEEEEETTTTEEEEECC
T ss_pred EEcCCCcccccccceeeecccc-cccccccceeEEEEEEcCCCC----------EEEEecCCceEEEEcCccHhHhhhhh
Confidence 99875 133333310000 000012345999999999887 7999999999999997633 23444
Q ss_pred cc-ccccceeeecCCCCCeeEEccCCce
Q 019258 310 AE-PCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 310 ~~-~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
.+ ..+|.+++ + ++.+|++|+.|+.
T Consensus 291 ~~h~~~v~~~~--~-~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 291 KFNEDSVVKIA--C-SDNILCLATSDDT 315 (342)
T ss_dssp CCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred cccCCCceEec--C-CCCeEEEEecCCc
Confidence 44 67899999 5 5689999998887
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-30 Score=229.40 Aligned_cols=244 Identities=16% Similarity=0.128 Sum_probs=191.1
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|.+.|++++|+ ++.+|++++.||.|++|++....... ......|.++|+++.|+ +..|++++.||.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCccee-eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 3588999999999 88999999999999999997332222 22223699999999997 789999999999999999
Q ss_pred CCCce-EEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEE
Q 019258 143 IGGGE-FKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+++. ....+..|.. .|.+++|+| +..+++++.|+.|++||++. .. ....+..+. ..|.+++|
T Consensus 87 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~-------~~v~~~~~ 155 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---NGTTSPIIIDAHA-------IGVNSASW 155 (379)
T ss_dssp ETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCT---TSCCCEEEEECCT-------TCEEEEEE
T ss_pred CCCceeEeeeecCCCc-ceEEEEeCCCCCCCEEEEecCCCcEEEEecCC---CCceeeEEecCCC-------CceEEEEE
Confidence 98741 3444444555 799999998 46899999999999999988 32 233344443 77999999
Q ss_pred cCC------------CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec---CCCCcCCC
Q 019258 217 HPS------------RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH---TKSSNISS 281 (343)
Q Consensus 217 ~p~------------~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~~~~~~ 281 (343)
+|. ...++++|+.||.|++||++.......... ....|...|.+++|+|+ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~h~~~v~~~~~sp~~~~~~------ 222 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAWSPTVLLRS------ 222 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEECCCCSSSE------
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-------EEecccCcEeEEEECCCCCCCC------
Confidence 994 245678999999999999987653322210 01578999999999999 55
Q ss_pred CCccceEEEecCCeEEEEecCCCc----ccccc---cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 282 SRVLPAMFCSEDGILAVVEQGEEP----FELLA---EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 282 ~~~~~l~s~s~dg~i~~~~~~~~~----~~~~~---~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.|++++.||.|++|+..... ..+.. ....|.+++|+| ++.+|++++.++.|++|+
T Consensus 223 ----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 223 ----YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp ----EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEE
T ss_pred ----eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEe
Confidence 79999999999999976431 12222 356899999999 679999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=254.57 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=221.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++|+.|+. |++|++...... .....|.+.|.+++|+ ++.+|++++.||.|
T Consensus 11 ~h~~~v~~i~~sp----~~~~la~~~~~g~-----v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 11 NRSDRVKGIDFHP----TEPWVLTTLYSGR-----VEIWNYETQVEV--RSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp EECSCEEEEEECS----SSSEEEEEETTSE-----EEEEETTTTEEE--EEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cCCCceEEEEECC----CCCEEEEEeCCCE-----EEEEECCCCceE--EEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 5888999999999 8999999998864 779999553222 2223588999999999 88999999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 170 (343)
++|++...+.+... ..|.+.|+++.|+ +..+++++.||+|++||+.++......+..|.. .+.+++|+| +..
T Consensus 80 ~vw~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 80 RVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPST 155 (814)
T ss_dssp EEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEE
T ss_pred EEEECCCCcEEEEE---ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCE
Confidence 99999866555443 2588999999999 889999999999999999887456666666665 799999998 568
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC--CCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP--SRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+++++.|+.|++||++. +.+...+..+.. ..+.+++|+| ++. ++++|+.||.|++||+++......+
T Consensus 156 l~~~~~dg~v~vwd~~~---~~~~~~~~~~~~------~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~- 224 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQ---STPNFTLTTGQE------RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATL- 224 (814)
T ss_dssp EEEEETTSEEEEEETTC---SSCSEEEECCCT------TCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEE-
T ss_pred EEEEeCCCeEEEEECCC---CcceeEEecCCC------CCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEE-
Confidence 99999999999999988 666666654432 6699999999 665 5689999999999999886544333
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCC
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPS 326 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~ 326 (343)
..|...|.+++|+|+++ .+++++.||.|++|+.... ...+......+.+++++|+...
T Consensus 225 ----------~~~~~~v~~~~~~~~~~----------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 225 ----------EGHMSNVSFAVFHPTLP----------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp ----------ECCSSCEEEEEECSSSS----------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred ----------cCCCCCEEEEEEcCCCC----------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 46889999999999988 7999999999999997542 2233333578999999994323
Q ss_pred -eeEEccCCceEEEEe
Q 019258 327 -DVICSLEWESIAIVS 341 (343)
Q Consensus 327 -~l~~~~~~~~i~~~~ 341 (343)
++++++ ++.+.+|+
T Consensus 285 ~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 285 NYIASGF-DNGFTVLS 299 (814)
T ss_dssp GEEEEEE-TTEEEEEE
T ss_pred eEEEEEe-CCCEEEEE
Confidence 355555 45566554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=260.80 Aligned_cols=246 Identities=13% Similarity=0.089 Sum_probs=195.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.+|...|.+++|+| +++++++|+.|+. |++|++...... .....|.+.|.+++|+ ++.+|++++.||.
T Consensus 612 ~~h~~~v~~~~~s~----~~~~l~s~~~d~~-----i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 680 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ----DGQRIASCGADKT-----LQVFKAETGEKL--LDIKAHEDEVLCCAFSSDDSYIATCSADKK 680 (1249)
T ss_dssp CCCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ecccccEEEEEECC----CCCEEEEEeCCCe-----EEEEECCCCCEE--EEeccCCCCEEEEEEecCCCEEEEEeCCCe
Confidence 36889999999999 8999999999975 779999653321 2223688999999999 8899999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
|++||+.+.+.+.... .|.+.|.++.|+ +..+++++.||.|++||++++. ....+..|.. .|.+++|+| +
T Consensus 681 v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~-~v~~~~~sp~~ 755 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYD---EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTN-SVNHCRFSPDD 755 (1249)
T ss_dssp EEEEETTTCCEEEEEE---CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSS-CEEEEEECSST
T ss_pred EEEEECCCCceEEEEc---CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCC-CEEEEEEecCC
Confidence 9999998766554433 589999999997 4478999999999999999985 5555566666 899999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEeccc-------------------------------------------C---
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-------------------------------------------G--- 202 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------------------------------------~--- 202 (343)
..+++++.|+.|++||++. +.....+.... +
T Consensus 756 ~~l~s~s~dg~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRS---ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGG---TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred CEEEEEECCCeEEEEeCCC---CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 8999999999999999987 33322221000 0
Q ss_pred --CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 203 --SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 203 --~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
....+...+.+++|+|++. ++++|+.||.|++||+.+.... ... .+|...|.+++|+|++.
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~-~~~----------~~h~~~v~~v~~spdg~----- 895 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKV-ADC----------RGHLSWVHGVMFSPDGS----- 895 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTEEE-EEE----------CCCSSCEEEEEECTTSS-----
T ss_pred eEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCcee-eec----------CCCccceEEEEECCCCC-----
Confidence 0001226799999999886 5678999999999999885443 333 57999999999999887
Q ss_pred CCCccceEEEecCCeEEEEec
Q 019258 281 SSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+++++.||.|++|+.
T Consensus 896 -----~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 896 -----SFLTASDDQTIRVWET 911 (1249)
T ss_dssp -----EEEEEETTSCEEEEEH
T ss_pred -----EEEEEeCCCeEEEEEc
Confidence 7999999999999973
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-29 Score=230.24 Aligned_cols=257 Identities=13% Similarity=0.158 Sum_probs=206.4
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSG 112 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~ 112 (343)
+++++++|+.|+. |++|++...... .....|.+.|.++.|+ ++.|++|+.||.|++|++...+.+... .
T Consensus 128 ~g~~l~sg~~dg~-----i~vwd~~~~~~~--~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~---~ 196 (445)
T 2ovr_B 128 CGNRIVSGSDDNT-----LKVWSAVTGKCL--RTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTL---Y 196 (445)
T ss_dssp ETTEEEEEETTSC-----EEEEETTTCCEE--EECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEE---C
T ss_pred cCCEEEEEECCCc-----EEEEECCCCcEE--EEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEE---C
Confidence 5789999999975 779999653221 2223688999999998 789999999999999999876655433 3
Q ss_pred ccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCC
Q 019258 113 FHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGG 192 (343)
Q Consensus 113 ~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~ 192 (343)
.|...|.++.++++.+++++.||+|++||+.+++ ....+..|.. .+.++++ .+..+++++.|+.|++||++. ++
T Consensus 197 ~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~ 270 (445)
T 2ovr_B 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVA-AVRCVQY-DGRRVVSGAYDFMVKVWDPET---ET 270 (445)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSS-CEEEEEE-CSSCEEEEETTSCEEEEEGGG---TE
T ss_pred CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcc-cEEEEEE-CCCEEEEEcCCCEEEEEECCC---Cc
Confidence 6899999999999999999999999999999885 4555555655 7999999 456799999999999999998 77
Q ss_pred CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 193 PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
++..+..+. ..|.++++ ++ ..+++|+.||.|++||+++++.... . ..|...+.++.++
T Consensus 271 ~~~~~~~~~-------~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~----------~~~~~~v~~~~~~- 328 (445)
T 2ovr_B 271 CLHTLQGHT-------NRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHT-L----------TGHQSLTSGMELK- 328 (445)
T ss_dssp EEEEECCCS-------SCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEE-E----------CCCCSCEEEEEEE-
T ss_pred EeEEecCCC-------CceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEE-E----------cCCcccEEEEEEe-
Confidence 777777665 77999999 33 3578999999999999998654433 3 4688889888875
Q ss_pred cCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccccc---cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 273 HTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FELLA---EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 273 ~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~~~---~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+. .+++++.||.|++|+.... . ..+.. +..+|.++++++ .++++|++++.|++|+-
T Consensus 329 -~~----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 329 -DN----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -TT----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEET
T ss_pred -CC----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEEC
Confidence 33 7999999999999997432 2 23322 356899999986 89999999999999973
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-30 Score=233.59 Aligned_cols=277 Identities=14% Similarity=0.065 Sum_probs=204.2
Q ss_pred eEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCC-ccCCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEE
Q 019258 23 AVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPH-SQWTPPTRISSLSTS--HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 23 ~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~-~~~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~ 98 (343)
.++++| ....++++++.|+. |.+|++...... ... ....|.+.|++++|+ ++.+|++|+.||.|++|+
T Consensus 39 ~~~~~~---~~~~~~~~~~~~g~-----i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNP---KFMALICEASGGGA-----FLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECS---SEEEEEBCCSSSCC-----EEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECC---CeEEEEEEEcCCCE-----EEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 345555 22244445677764 779999543221 222 234688999999999 678999999999999999
Q ss_pred ccCceee----eeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEE--cCCCccceEEEEeCC-C
Q 019258 99 SAMQVLL----SVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVY--DGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 99 ~~~~~~~----~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~--~~~~~~~v~~~~~~~-~ 168 (343)
+...... ........|...|.++.|+ + ..+++++.||+|++||+++++ ....+ ..|.. .|.+++|+| +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~ 188 (402)
T 2aq5_A 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPD-TIYSVDWSRDG 188 (402)
T ss_dssp CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCS-CEEEEEECTTS
T ss_pred ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCC-ceEEEEECCCC
Confidence 9854211 1111123689999999999 4 689999999999999999985 55555 45555 799999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEEEcCCCCeEEEEE---ecCCcEEEEEccCCcee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVDIHPSRKHTCLAG---GSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg---~~dg~v~iwd~~~~~~~ 244 (343)
..|++++.|+.|++||++. ++.+..+ ..+.+ ..+.++.|+|++. ++++| +.|+.|++||++....+
T Consensus 189 ~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~ 258 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRK---GTVVAEKDRPHEG------TRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEP 258 (402)
T ss_dssp SCEEEEETTSEEEEEETTT---TEEEEEEECSSCS------SSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSC
T ss_pred CEEEEEecCCcEEEEeCCC---CceeeeeccCCCC------CcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCC
Confidence 8999999999999999998 6777776 45542 3489999999864 66788 78999999999987665
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce-EEEecCCeEEEEecCCCc--ccccc---ccccccee
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA-MFCSEDGILAVVEQGEEP--FELLA---EPCAINSF 318 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l-~s~s~dg~i~~~~~~~~~--~~~~~---~~~~i~s~ 318 (343)
..... ..|...+..++|+|++. .+ ++++.||.|++|+..... ...+. ...++.++
T Consensus 259 ~~~~~---------~~~~~~v~~~~~s~~~~----------~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~ 319 (402)
T 2aq5_A 259 LSLQE---------LDTSSGVLLPFFDPDTN----------IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM 319 (402)
T ss_dssp SEEEE---------CCCCSSCEEEEEETTTT----------EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred ceEEe---------ccCCCceeEEEEcCCCC----------EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence 55442 34678899999999988 45 466689999999976433 22222 24789999
Q ss_pred eecCCCCCeeEEccCCceEEEEe
Q 019258 319 DIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+++| ++.+++++ ++.+++|+
T Consensus 320 ~~sp-~~~~~~s~--~~~~~~~~ 339 (402)
T 2aq5_A 320 GYMP-KRGLEVNK--CEIARFYK 339 (402)
T ss_dssp EECC-GGGSCGGG--TEEEEEEE
T ss_pred EEec-ccccceec--ceeEEEEE
Confidence 9999 44665543 45777775
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=225.72 Aligned_cols=297 Identities=11% Similarity=0.047 Sum_probs=204.8
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCC-C-CCceeeeeCCCCCCCCC--------CccCCCCCCeeEEEcc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDA-D-SPSLETHSISLPASLTP--------HSQWTPPTRISSLSTS 80 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~-~-~~~l~~w~~~~~~~~~~--------~~~~~~~~~v~~v~~~ 80 (343)
....+..+.+|.+++|+| ++++||+|+.|... + .-+|++|++........ ...-.++..|.++++.
T Consensus 7 ~~~~~~~g~PV~sv~fs~----dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 7 VTASYNVGYPAYGAKFLN----NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CEEEEECSSCEEEEEEEE----TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE
T ss_pred eeeecCCCCCEEEEEEeC----CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC
Confidence 344555667899999999 89999999866431 1 11478999854322100 1122456678888886
Q ss_pred CCCeEEEE-----------cCCCcEEEEEccCce-eeee---ecc--CCccccCeEEEEec--CCEEEE--EeCCCcEEE
Q 019258 81 HQSLVAAS-----------TLSGSLHVLSSAMQV-LLSV---DEN--SGFHVGPISGVDLT--GSECVS--VGEDGRVNL 139 (343)
Q Consensus 81 ~~~~l~~~-----------s~dg~v~v~~~~~~~-~~~~---~~~--~~~h~~~v~~~~~~--~~~~~s--~s~dg~v~~ 139 (343)
++.+++| +.|+.+++|++.... .+.. ... ...+...+.+++|+ |+.+++ ++.|++|++
T Consensus 83 -~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 83 -KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp -TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred -CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 5566655 357889999986322 2211 111 12244568889998 777654 457999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
||+.+++ ....+..+. .|.+++|+| +..+++++ ++.+++|+... +..+...... . +...+.+++|+|
T Consensus 162 wd~~~~~-~~~~~~~~~--~V~~v~fspdg~~l~s~s-~~~~~~~~~~~---~~~~~~~~~~-~----~~~~v~~v~fsp 229 (365)
T 4h5i_A 162 IDPSDLT-EKFEIETRG--EVKDLHFSTDGKVVAYIT-GSSLEVISTVT---GSCIARKTDF-D----KNWSLSKINFIA 229 (365)
T ss_dssp EETTTTE-EEEEEECSS--CCCEEEECTTSSEEEEEC-SSCEEEEETTT---CCEEEEECCC-C----TTEEEEEEEEEE
T ss_pred eECCCCc-EEEEeCCCC--ceEEEEEccCCceEEecc-ceeEEEEEecc---CcceeeeecC-C----CCCCEEEEEEcC
Confidence 9999985 444444333 699999999 66677666 56677777766 4544332211 1 116799999999
Q ss_pred CCCeEEEEEecCC----cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 219 SRKHTCLAGGSSG----TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 219 ~~~~~~~sg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
++.. +++++.|+ .+++||++.......... ....|...|++++|+|++. +|++++.||
T Consensus 230 dg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~V~~~~~Spdg~----------~lasgs~D~ 291 (365)
T 4h5i_A 230 DDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSK-------QVTNRFKGITSMDVDMKGE----------LAVLASNDN 291 (365)
T ss_dssp TTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEE-------EEESSCSCEEEEEECTTSC----------EEEEEETTS
T ss_pred CCCE-EEEEecCCcceeEEeecccccceecceeee-------eecCCCCCeEeEEECCCCC----------ceEEEcCCC
Confidence 9864 56777776 688899876543221110 0156889999999999988 799999999
Q ss_pred eEEEEecCCC-c-cccc-ccccccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 295 ILAVVEQGEE-P-FELL-AEPCAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 295 ~i~~~~~~~~-~-~~~~-~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
+|++|+.... . ..++ .+..+|++++|+| +|++|++|+.|+.|+||+-|
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 9999997543 2 3333 3467899999999 67999999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=240.57 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=165.3
Q ss_pred CCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECC
Q 019258 69 TPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 69 ~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~ 143 (343)
+|...|++|+|+ ++.+|++|+.||.|+|||+...+....... .+|.+.|++++|+ +..|++++.||+|++||++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 467789999998 667999999999999999975543333332 3699999999997 6799999999999999998
Q ss_pred CCceEEEEEcCCC-ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 144 GGGEFKRVYDGNG-LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 144 ~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
++ ........+. ...+.+++|++ +..|++|+.|+.|++||++. +.+..+..|. ..|.+++|+|++.
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~-------~~v~~v~~~p~~~ 263 (435)
T 4e54_B 196 GN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHK-------KKVTHVALNPCCD 263 (435)
T ss_dssp SC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCS-------SCEEEEEECTTCS
T ss_pred CC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEeccc-------ceEEeeeecCCCc
Confidence 76 3444433322 22578899999 88999999999999999865 5555666555 7899999999998
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.++++|+.||.|++||+++......+. ....|...|++++|+|++. +|++++.||.|++|+.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~h~~~v~~~~~spdg~----------~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVNAACFSPDGA----------RLLTTDQKSEIRVYSA 325 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCS--------BCCBCSSCEEECCBCTTSS----------EEEEEESSSCEEEEES
T ss_pred eEEEEecCcceeeEEecccccccceEE--------EeeeccccccceeECCCCC----------eeEEEcCCCEEEEEEC
Confidence 899999999999999998765433322 1146899999999999987 7999999999999997
Q ss_pred CC
Q 019258 302 GE 303 (343)
Q Consensus 302 ~~ 303 (343)
..
T Consensus 326 ~~ 327 (435)
T 4e54_B 326 SQ 327 (435)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-30 Score=227.86 Aligned_cols=277 Identities=11% Similarity=0.078 Sum_probs=205.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+|+|+|.. .++++|++|+.|+. |++|++.............|.+.|.+++|+ ++.+|++++.||.|
T Consensus 37 ~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPT-LPGNFLIAGSWAND-----VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CCSSCEEEEEECCTT-SSSEEEEEEETTSE-----EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCceEEEEEcCCC-CCceEEEEECCCCc-----EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 588999999999910 01699999999975 779999653222213334688999999999 88899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEe--c--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDL--T--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~--~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
++|++...+..... .|..+|.++.| + +..+++++.||.|++||+++++ ....+..+. .+.++.+.+ ..
T Consensus 111 ~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~--~~~~~~~~~-~~ 182 (368)
T 3mmy_A 111 KMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE--RCYCADVIY-PM 182 (368)
T ss_dssp EEEETTTTEEEEEE----ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSS--CEEEEEEET-TE
T ss_pred EEEEcCCCCceeec----cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCC--CceEEEecC-Ce
Confidence 99999876655432 58899999999 5 6789999999999999999875 444444454 477776664 57
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC---eEEEEEecCCcEEEEEccCCce--ee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK---HTCLAGGSSGTVFAWDLRWQQQ--SI 245 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~~~sg~~dg~v~iwd~~~~~~--~~ 245 (343)
+++++.++.+++||++. ............. ..+.++++.+... ..+++|+.||.|++||++.... +.
T Consensus 183 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 183 AVVATAERGLIVYQLEN--QPSEFRRIESPLK------HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EEEEEGGGCEEEEECSS--SCEEEEECCCSCS------SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred eEEEeCCCcEEEEEecc--ccchhhhcccccc------CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 88899999999999987 2222222222111 3455666554432 3478999999999999987532 22
Q ss_pred eeecCCCCcccccCCccc------------cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc
Q 019258 246 VLSGVGTGEAVTHSLSES------------EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE 311 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~------------~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~ 311 (343)
... ..|.. .|.+++|+|++. +|++++.||.|++|+.... ...+..+
T Consensus 255 ~~~----------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 255 FTF----------KCHRSNGTNTSAPQDIYAVNGIAFHPVHG----------TLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp EEE----------ECSEEC----CCCEEECCEEEEEECTTTC----------CEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred eee----------eeeecccccccccccccceEEEEEecCCC----------EEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 222 23443 799999999987 7999999999999997643 2333344
Q ss_pred ccccceeeecCCCCCeeEEccCCc
Q 019258 312 PCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 312 ~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
..+|.+++|+| ++.+|++|++++
T Consensus 315 ~~~v~~~~~s~-~g~~l~~~s~d~ 337 (368)
T 3mmy_A 315 DQPISACCFNH-NGNIFAYASSYD 337 (368)
T ss_dssp SSCEEEEEECT-TSSCEEEEECCC
T ss_pred CCCceEEEECC-CCCeEEEEeccc
Confidence 67899999999 678899888765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=225.55 Aligned_cols=255 Identities=11% Similarity=-0.018 Sum_probs=195.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++++.|+. +++|++.............|...|.+++|+ ++.+|++++.||.|
T Consensus 50 ~h~~~v~~~~~~~----~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 120 (372)
T 1k8k_C 50 EHNGQVTGVDWAP----DSNRIVTCGTDRN-----AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120 (372)
T ss_dssp CCSSCEEEEEEET----TTTEEEEEETTSC-----EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred CCCCcccEEEEeC----CCCEEEEEcCCCe-----EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEE
Confidence 4788999999999 8899999999865 779999543322223345688899999999 88999999999999
Q ss_pred EEEEccCceeee-eeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC------------------CCceEEEEEc
Q 019258 95 HVLSSAMQVLLS-VDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI------------------GGGEFKRVYD 153 (343)
Q Consensus 95 ~v~~~~~~~~~~-~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~------------------~~~~~~~~~~ 153 (343)
++|++....... .......|...|.++.|+ +..+++++.||.|++||++ .+ .....+.
T Consensus 121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (372)
T 1k8k_C 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESS 199 (372)
T ss_dssp EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECC
T ss_pred EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecC
Confidence 999998544221 122234688999999998 7899999999999999964 34 3555555
Q ss_pred CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
.|.. .+.+++|+| +..+++++.|+.|++||++. ++++..+..+. .++.+++|+|++. ++++| .||.
T Consensus 200 ~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~-------~~v~~~~~~~~~~-~l~~~-~d~~ 266 (372)
T 1k8k_C 200 SSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK---KMAVATLASET-------LPLLAVTFITESS-LVAAG-HDCF 266 (372)
T ss_dssp CCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG---TTEEEEEECSS-------CCEEEEEEEETTE-EEEEE-TTSS
T ss_pred CCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC---CceeEEEccCC-------CCeEEEEEecCCC-EEEEE-eCCe
Confidence 5555 799999999 78999999999999999999 77887887664 7899999999875 55555 9999
Q ss_pred EEEEEccC--Cceeee-ee--------------------cC-CCCc------ccccCCccccEEEEEEeecCC---CCcC
Q 019258 233 VFAWDLRW--QQQSIV-LS--------------------GV-GTGE------AVTHSLSESEVWEVQYDCHTK---SSNI 279 (343)
Q Consensus 233 v~iwd~~~--~~~~~~-~~--------------------~~-~~~~------~~~~~~h~~~v~~v~~~p~~~---~~~~ 279 (343)
|++||++. +..... .. .. +... .....+|...|.+++|++.+. .
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~--- 343 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS--- 343 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS---
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee---
Confidence 99999987 310000 00 00 0000 011147999999999886653 4
Q ss_pred CCCCccceEEEecCCeEEEEecC
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+|++++.||.|++|+..
T Consensus 344 ------~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 344 ------QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------EEEEEETTSEEEEEEHH
T ss_pred ------eEEEecCCCceEEEEec
Confidence 89999999999999964
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=227.65 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=216.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|...|.+++|++ +++++|+.|+. +++|++...... .....|...|.++.|. ++.|++++.||.|+
T Consensus 157 ~h~~~v~~~~~~~------~~l~s~~~dg~-----i~vwd~~~~~~~--~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 157 GHTGGVWSSQMRD------NIIISGSTDRT-----LKVWNAETGECI--HTLYGHTSTVRCMHLH-EKRVVSGSRDATLR 222 (445)
T ss_dssp CCSSCEEEEEEET------TEEEEEETTSC-----EEEEETTTTEEE--EEECCCSSCEEEEEEE-TTEEEEEETTSEEE
T ss_pred CCCCCEEEEEecC------CEEEEEeCCCe-----EEEEECCcCcEE--EEECCCCCcEEEEEec-CCEEEEEeCCCEEE
Confidence 4778899999975 48999999975 779999653221 2223588899999996 77899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
+||+...+.+.... .|..+|.++.+++..+++++.||.|++||+++++ ....+..|.. .+.+++| .+..+++++
T Consensus 223 ~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~l~~~~ 296 (445)
T 2ovr_B 223 VWDIETGQCLHVLM---GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTN-RVYSLQF-DGIHVVSGS 296 (445)
T ss_dssp EEESSSCCEEEEEE---CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSS-CEEEEEE-CSSEEEEEE
T ss_pred EEECCCCcEEEEEc---CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCC-ceEEEEE-CCCEEEEEe
Confidence 99998665554432 5889999999999999999999999999999884 5555566665 7999999 567899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
.|+.|++||++. ++++..+..+. ..+.++.+++ ..+++|+.||.|++||+++++....+.. .
T Consensus 297 ~d~~i~i~d~~~---~~~~~~~~~~~-------~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~---- 358 (445)
T 2ovr_B 297 LDTSIRVWDVET---GNCIHTLTGHQ-------SLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQG-P---- 358 (445)
T ss_dssp TTSCEEEEETTT---CCEEEEECCCC-------SCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECS-T----
T ss_pred CCCeEEEEECCC---CCEEEEEcCCc-------ccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcEEEEEcc-C----
Confidence 999999999998 77777777665 6788888865 3678999999999999988655444431 1
Q ss_pred cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c-ccc-----cccccccceeeecCCCCCee
Q 019258 256 VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P-FEL-----LAEPCAINSFDIDPQNPSDV 328 (343)
Q Consensus 256 ~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~-~~~-----~~~~~~i~s~~~~~~~~~~l 328 (343)
..|...|.+++|++ . .+++++.||.|++|+.... . ..+ .....+|.+++++| ++.++
T Consensus 359 ---~~~~~~v~~~~~~~--~----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 422 (445)
T 2ovr_B 359 ---NKHQSAVTCLQFNK--N----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVC 422 (445)
T ss_dssp ---TSCSSCEEEEEECS--S----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEE
T ss_pred ---CCCCCCEEEEEECC--C----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEE
Confidence 34889999999963 3 7999999999999997533 2 222 12346899999999 67899
Q ss_pred EEccCCce----EEEEe
Q 019258 329 ICSLEWES----IAIVS 341 (343)
Q Consensus 329 ~~~~~~~~----i~~~~ 341 (343)
++|++++. +++|+
T Consensus 423 a~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSSSSCCEEEEEE
T ss_pred EEcccCCCCccEEEEEE
Confidence 99999986 88886
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=223.51 Aligned_cols=262 Identities=12% Similarity=0.145 Sum_probs=193.0
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEc------c-CCCe
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLST------S-HQSL 84 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~------~-~~~~ 84 (343)
+..+.|...|.+++|+|.. +++++|++|+.|+. +++|++..... .......|.+.|.++.| + ++.+
T Consensus 59 ~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~-----i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~s~~~~~ 131 (357)
T 3i2n_A 59 LREIEKAKPIKCGTFGATS-LQQRYLATGDFGGN-----LHIWNLEAPEM-PVYSVKGHKEIINAIDGIGGLGIGEGAPE 131 (357)
T ss_dssp EEEEEESSCEEEEECTTCC-TTTCCEEEEETTSC-----EEEECTTSCSS-CSEEECCCSSCEEEEEEESGGGCC-CCCE
T ss_pred eeeecccCcEEEEEEcCCC-CCCceEEEecCCCe-----EEEEeCCCCCc-cEEEEEecccceEEEeeccccccCCCccE
Confidence 3445688899999999921 12799999999975 77999965331 11223468899999954 5 6789
Q ss_pred EEEEcCCCcEEEEEccCce-eeeeecc-CCccccCeEEEE----ec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC
Q 019258 85 VAASTLSGSLHVLSSAMQV-LLSVDEN-SGFHVGPISGVD----LT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG 156 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~-~~~~~~~-~~~h~~~v~~~~----~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~ 156 (343)
|++++.||.|++|++...+ .+..... ...+...|.++. |+ +..+++++.||.|++||+++++ ..... .+.
T Consensus 132 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~ 209 (357)
T 3i2n_A 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWET-NIK 209 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEEE-ECS
T ss_pred EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeeec-CCC
Confidence 9999999999999998554 3333322 112244899998 44 8899999999999999999985 44443 343
Q ss_pred ccceEEEEeCC----CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-----cccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 157 LVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-----GNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 157 ~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
. .+.+++|+| +..+++++.|+.|++||++. .++...+. .+. ..|.+++|+|+++.++++|
T Consensus 210 ~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 210 N-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT---QHPTKGFASVSEKAHK-------STVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp S-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE---EETTTEEEEEEEECCS-------SCEEEEEEETTEEEEEEEE
T ss_pred C-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC---CCcccceeeeccCCCc-------CCEEEEEECCCCCcEEEEE
Confidence 3 799999996 67899999999999999998 55544443 443 7899999999987688999
Q ss_pred ecCCcEEEEEccCCceeeeeecCCC--------CcccccCCccccEEEEEEeecCCCCcCCCCCccceE-EEecCCeEEE
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGT--------GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM-FCSEDGILAV 298 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~-s~s~dg~i~~ 298 (343)
+.||.|++||++....+......+. ........|...|.+++|+|++. .|+ +++.||.|++
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR----------GLCVCSSFDQTVRV 348 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST----------TEEEEEETTSEEEE
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC----------eEEEEecCCCcEEE
Confidence 9999999999986543210000000 00001156899999999999988 566 8999999999
Q ss_pred EecCC
Q 019258 299 VEQGE 303 (343)
Q Consensus 299 ~~~~~ 303 (343)
|+...
T Consensus 349 w~~~~ 353 (357)
T 3i2n_A 349 LIVTK 353 (357)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=222.30 Aligned_cols=248 Identities=12% Similarity=0.199 Sum_probs=190.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCCcc-CCCCCCeeEEEccC---CCeEEEEcC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPHSQ-WTPPTRISSLSTSH---QSLVAASTL 90 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~~~-~~~~~~v~~v~~~~---~~~l~~~s~ 90 (343)
.|...|.+++|+| ++++|++|+.|+. +++|++..... ..+... ..|.+.|.+++|+. +.+|++++.
T Consensus 9 gH~~~v~~~~~~~----~~~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 9 GHDDLVHDVVYDF----YGRHVATCSSDQH-----IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCSSCEEEEEECS----SSSEEEEEETTSE-----EEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccccceeEEEEcC----CCCEEEEeeCCCe-----EEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 5889999999999 8999999999975 77999964321 122222 36889999999983 789999999
Q ss_pred CCcEEEEEccCcee------eeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEE-----E---
Q 019258 91 SGSLHVLSSAMQVL------LSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRV-----Y--- 152 (343)
Q Consensus 91 dg~v~v~~~~~~~~------~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~-----~--- 152 (343)
||.|++|++...+. .........|.+.|.++.|+ +..+++++.||.|++||+++++..... .
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 99999999985421 01122223689999999998 568999999999999999875321110 0
Q ss_pred ----cCCCccceEEEEeCC----CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCC-
Q 019258 153 ----DGNGLVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRK- 221 (343)
Q Consensus 153 ----~~~~~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~- 221 (343)
..+.. .+.+++|+| ...+++++.++.+.+|+... +.. +..+..|. ..|.+++|+|++.
T Consensus 160 ~~~~~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~-------~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 160 SIPPANHLQ-SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD---GKLHVAAKLPGHK-------SLIRSISWAPSIGR 228 (351)
T ss_dssp SCCCSSCSC-CCEEEEECCCSSSCCEEEEEETTEEEEEEECTT---SCEEEEEECCCCC-------SCEEEEEECCCSSC
T ss_pred ccccCCccc-ceeEEEeccCCCCCcEEEEecCCCcEEEEccCC---CceeeeeecCCCC-------cceeEEEECCCCCC
Confidence 12333 799999998 67899999999998887766 332 33344443 7899999999873
Q ss_pred --eEEEEEecCCcEEEEEccCCc---------------------------------------------eeeeeecCCCCc
Q 019258 222 --HTCLAGGSSGTVFAWDLRWQQ---------------------------------------------QSIVLSGVGTGE 254 (343)
Q Consensus 222 --~~~~sg~~dg~v~iwd~~~~~---------------------------------------------~~~~~~~~~~~~ 254 (343)
.++++|+.||.|++||++... .+....
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 302 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH------ 302 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE------
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE------
Confidence 678999999999999998742 122222
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+|...|++++|+|++. +|++++.||.|++|+...
T Consensus 303 ----~~h~~~v~~~~~s~~~~----------~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 303 ----DDHNGEVWSVSWNLTGT----------ILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ----CTTSSCEEEEEECSSSC----------CEEEEETTSCEEEEEECT
T ss_pred ----ecccccEEEEEEcCCCC----------EEEEecCCCcEEEEecCc
Confidence 57899999999999987 799999999999999753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=231.08 Aligned_cols=244 Identities=12% Similarity=0.147 Sum_probs=191.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc--CCCeEEEEcCCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS--HQSLVAASTLSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~--~~~~l~~~s~dg~ 93 (343)
+...|.+++|+|....++++|++|+.|+. |++|++.... ++..+ .|.+.|.+++|+ ++.+|++++.||.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGI-----IRIINPITMQ---CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCE-----EEEECTTTCC---EEEEEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCE-----EEEEEchhce---EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 55789999999954344789999999965 7799996532 23333 588999999998 6789999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE-----------------------
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF----------------------- 148 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~----------------------- 148 (343)
|++||+...+.+........|...|.++.|+ +..+++++.||.|++||+++++..
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 9999998766665554334699999999998 889999999999999999875311
Q ss_pred ----EEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCC--------------eeEEecccCCCCCcccC
Q 019258 149 ----KRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGP--------------VLQFKGNFGSQGKASGM 210 (343)
Q Consensus 149 ----~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 210 (343)
......+.. .|.+++|+ ++.+++++.|+.|++||++. ... +..+..+. ..
T Consensus 220 ~~~~~~~~~~~~~-~v~~~~~~-~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 287 (366)
T 3k26_A 220 HFPDFSTRDIHRN-YVDCVRWL-GDLILSKSCENAIVCWKPGK---MEDDIDKIKPSESNVTILGRFDYSQ-------CD 287 (366)
T ss_dssp CCCSEEECSSCSS-CCCEEEEE-TTEEEEECSSSEEEEEEESS---TTCCGGGCCTTCCCEEEEEEEECSS-------CC
T ss_pred ccCccccccCCcc-eEEEEEEc-CCEEEEEecCCEEEEEeCCC---ccccccccccCCcchheeccccccC-------Cc
Confidence 111122444 79999998 77999999999999999987 332 33444443 67
Q ss_pred eEEEEEcCC--CCeEEEEEecCCcEEEEEccCCcee---eeeecCCCCcccccCCc--cccEEEEEEeecCCCCcCCCCC
Q 019258 211 IHSVDIHPS--RKHTCLAGGSSGTVFAWDLRWQQQS---IVLSGVGTGEAVTHSLS--ESEVWEVQYDCHTKSSNISSSR 283 (343)
Q Consensus 211 i~~v~~~p~--~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~~~~ 283 (343)
|.+++|+|+ +. ++++|+.||.|++||++..+.. ...+ ..| ...|.+++|+|++.
T Consensus 288 v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~-------- 348 (366)
T 3k26_A 288 IWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPHKAKCTTL----------THHKCGAAIRQTSFSRDSS-------- 348 (366)
T ss_dssp SSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGGGCEEEEE----------CCTTCCSCEEEEEECTTSS--------
T ss_pred EEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCccccceEE----------cccccCCceEEEEeCCCCC--------
Confidence 999999998 65 6689999999999999875432 1222 334 78999999999887
Q ss_pred ccceEEEecCCeEEEEec
Q 019258 284 VLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 284 ~~~l~s~s~dg~i~~~~~ 301 (343)
+|++++.||.|++|+.
T Consensus 349 --~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 349 --ILIAVCDDASIWRWDR 364 (366)
T ss_dssp --EEEEEETTSEEEEEEC
T ss_pred --eEEEEeCCCEEEEEEe
Confidence 7999999999999986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=227.85 Aligned_cols=244 Identities=14% Similarity=0.211 Sum_probs=193.7
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG 92 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg 92 (343)
....|...|.+++|+| ++++|++|+.|+. +++|++...... .....|.+.|.+++|. +..|++++.||
T Consensus 129 ~~~~~~~~v~~v~~s~----~~~~l~~~~~dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~~~~~-~~~l~~~~~dg 196 (401)
T 4aez_A 129 AETDESTYVASVKWSH----DGSFLSVGLGNGL-----VDIYDVESQTKL--RTMAGHQARVGCLSWN-RHVLSSGSRSG 196 (401)
T ss_dssp EECCTTCCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTCCEE--EEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred eecCCCCCEEEEEECC----CCCEEEEECCCCe-----EEEEECcCCeEE--EEecCCCCceEEEEEC-CCEEEEEcCCC
Confidence 3344788999999999 8899999999975 779999653322 2223688999999995 78999999999
Q ss_pred cEEEEEccC-ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--
Q 019258 93 SLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 93 ~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-- 167 (343)
.|++|++.. ....... ..|.+.|.++.|+ +..+++++.||.|++||++++. ....+..+.. .|.+++|+|
T Consensus 197 ~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~~p~~ 271 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTL---QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNA-AVKAVAWCPWQ 271 (401)
T ss_dssp EEEEEETTSSSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSS-CCCEEEECTTS
T ss_pred CEEEEecccCcceeeEE---cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcc-eEEEEEECCCC
Confidence 999999983 3333222 2589999999998 8899999999999999999875 4555555655 799999999
Q ss_pred CCEEEEEe--CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCcee
Q 019258 168 PTEFVTGG--FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 168 ~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~ 244 (343)
...+++++ .|+.|++||++. ++++..+... ..+.+++|+|++..++++ |+.||.|++||++.....
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAAT---GARVNTVDAG--------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETTT---CCEEEEEECS--------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred CCEEEEecCCCCCEEEEEECCC---CCEEEEEeCC--------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 45666655 699999999998 6777666522 669999999998766544 558999999999875433
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.... ...|...|.+++|+|++. .|++++.||.|++|+...
T Consensus 341 ~~~~---------~~~h~~~v~~~~~s~dg~----------~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 341 KQVD---------IPAHDTRVLYSALSPDGR----------ILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEE---------EECCSSCCCEEEECTTSS----------EEEEECTTSEEEEEECCC
T ss_pred eEEE---------ecCCCCCEEEEEECCCCC----------EEEEEeCCCcEEEEECCC
Confidence 3221 156899999999999987 799999999999999753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=245.01 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=188.3
Q ss_pred CCCCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceee--eeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 68 WTPPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLL--SVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 68 ~~~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~--~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
..|.+.|++++|+ +.++|++|+.||+|++|++...... .......+|...|.++.|+ ++.+++++.||+|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 3689999999998 4578999999999999999742211 1112234699999999998 88999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+.++. ....+..|.. .|.+++|+| +..|++++.|++|++||++. .....+. ...+ |...|.+++|+|+
T Consensus 459 ~~~~~-~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~----~~~~~~~~~~~~----h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 459 LAAGV-STRRFVGHTK-DVLSVAFSLDNRQIVSASRDRTIKLWNTLG----ECKYTISEGGEG----HRDWVSCVRFSPN 528 (694)
T ss_dssp TTTTE-EEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTS----CEEEEECSSTTS----CSSCEEEEEECSC
T ss_pred CCCCc-ceeEEeCCCC-CEEEEEEeCCCCEEEEEeCCCEEEEEECCC----CcceeeccCCCC----CCCcEEEEEEeCC
Confidence 99985 4555566666 799999999 88999999999999999865 2222222 1111 2277999999998
Q ss_pred C-CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 220 R-KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 220 ~-~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
+ ...+++|+.||+|++||++...... .+ .+|.+.|++++|+|++. .|++++.||+|++
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~-~~----------~~h~~~v~~v~~spdg~----------~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRS-TL----------AGHTGYVSTVAVSPDGS----------LCASGGKDGVVLL 587 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEE-EE----------CCCSSCEEEEEECTTSS----------EEEEEETTSBCEE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEE-EE----------cCCCCCEEEEEEeCCCC----------EEEEEeCCCeEEE
Confidence 6 3578899999999999998854433 33 57999999999999987 7999999999999
Q ss_pred EecCCCc-ccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 299 VEQGEEP-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 299 ~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|+..... ...+.....|.++.++| ++.+|++++ ++.|++|+-
T Consensus 588 wd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~ 630 (694)
T 3dm0_A 588 WDLAEGKKLYSLEANSVIHALCFSP-NRYWLCAAT-EHGIKIWDL 630 (694)
T ss_dssp EETTTTEEEECCBCSSCEEEEEECS-SSSEEEEEE-TTEEEEEET
T ss_pred EECCCCceEEEecCCCcEEEEEEcC-CCcEEEEEc-CCCEEEEEC
Confidence 9975432 22233456799999999 446665555 567999963
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=219.64 Aligned_cols=251 Identities=10% Similarity=-0.018 Sum_probs=190.3
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce-eeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEE
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd 141 (343)
..|.+.|++++|+ ++.+|++++.||.|++|++.... ..........|.++|++++|+ +..+++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 4688999999999 88999999999999999998432 222222233699999999997 67999999999999999
Q ss_pred CCCCc--------eEEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEec------ccCCC
Q 019258 142 VIGGG--------EFKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKG------NFGSQ 204 (343)
Q Consensus 142 ~~~~~--------~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~ 204 (343)
++++. .....+..|.. .|.+++|+| +..+++++.|+.|++||++. .+.+..+.. .....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALE---PSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSS---TTCTTCCEEEEEEESCSCCC
T ss_pred cCCCcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCC---hHHhcccccccccccccccc
Confidence 98752 23445555655 899999998 56799999999999999988 443332221 00001
Q ss_pred CCcccCeEEEEEcCC--CCeEEEEEecCCcEEEEEccCCcee-eeeecCCCCcccccCCccccEEEEEEeecCC---CCc
Q 019258 205 GKASGMIHSVDIHPS--RKHTCLAGGSSGTVFAWDLRWQQQS-IVLSGVGTGEAVTHSLSESEVWEVQYDCHTK---SSN 278 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~--~~~~~~sg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---~~~ 278 (343)
..+...+.+++|+|+ ...++++++.|+.+.+|+....... .... ..|...|.+++|+|++. .
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~i~~~~~~p~~~~~~~-- 231 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL----------PGHKSLIRSISWAPSIGRWYQ-- 231 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC----------CCCCSCEEEEEECCCSSCSSE--
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec----------CCCCcceeEEEECCCCCCcce--
Confidence 112267999999997 3457789999999988887664432 2333 57999999999999972 3
Q ss_pred CCCCCccceEEEecCCeEEEEecCCC-----------------------------------------------c-ccccc
Q 019258 279 ISSSRVLPAMFCSEDGILAVVEQGEE-----------------------------------------------P-FELLA 310 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~~~~~~-----------------------------------------------~-~~~~~ 310 (343)
.|++++.||.|++|+.... . ..+..
T Consensus 232 -------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 232 -------LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp -------EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred -------EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 7999999999999986532 1 11122
Q ss_pred cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 311 EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 311 ~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+..+|++++++| ++++|++|+.|+.|++|+-
T Consensus 305 h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 305 HNGEVWSVSWNL-TGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp TSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred ccccEEEEEEcC-CCCEEEEecCCCcEEEEec
Confidence 346899999999 5799999999999999973
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=217.24 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=192.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| ++++|++|+.|+. +++|+....... .....+...+..+.+. .+..|++++.|+.+
T Consensus 84 ~h~~~V~~~~~s~----dg~~l~s~~~d~~-----i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 84 GHSHFVSDVVISS----DGQFALSGSWDGT-----LRLWDLTTGTTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSE-----EEEEETTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCCCEEEEEECC----CCCEEEEEccccc-----ceEEeeccccee--eeecCCCCceeEEEEeecCccceeecCCCeE
Confidence 4678899999999 8999999999975 679998553222 2233456677788888 78899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 169 (343)
++|+......... ....|...+..+.+. ...+++++.|++|++||+++++ ....+..|.. .|.+++|+| +.
T Consensus 153 ~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~-~v~~~~~s~~~~ 228 (340)
T 4aow_A 153 KLWNTLGVCKYTV--QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTG-YLNTVTVSPDGS 228 (340)
T ss_dssp EEECTTSCEEEEE--CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEEECTTSS
T ss_pred EEEEeCCCceEEE--EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCCCC-cEEEEEECCCCC
Confidence 9999875443322 233688999999987 4578999999999999999984 5666666766 899999999 88
Q ss_pred EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 170 EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 170 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
.|++++.|+.|++||++. .+++..+..+ ..+.++.|+|++. +++++.|+.|++||++.......+..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~--------~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNE---GKHLYTLDGG--------DIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp EEEEEETTCEEEEEETTT---TEEEEEEECS--------SCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECC
T ss_pred EEEEEeCCCeEEEEEecc---CceeeeecCC--------ceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEeccc
Confidence 999999999999999988 6666666543 5699999999764 45678899999999987544333221
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
. ........|...|++++|+|++. +|++|+.||.|++|+..
T Consensus 296 ~--~~~~~~~~h~~~v~~l~~s~dg~----------~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 296 E--VISTSSKAEPPQCTSLAWSADGQ----------TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp C---------CCCCCEEEEEECTTSS----------EEEEEETTSCEEEEEEE
T ss_pred c--ceeeeccCCCCCEEEEEECCCCC----------EEEEEeCCCEEEEEeCC
Confidence 0 00111246889999999999987 79999999999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=234.72 Aligned_cols=289 Identities=13% Similarity=0.080 Sum_probs=209.2
Q ss_pred ccc---ceeeEEecCCCCCC-CCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-----CCCCCeeEEEccCCCeEEE
Q 019258 17 QSK---YIDAVRWLPPLSPL-SKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-----TPPTRISSLSTSHQSLVAA 87 (343)
Q Consensus 17 ~~~---~i~~v~w~p~~~~~-~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~~~l~~ 87 (343)
|.. .|.+++|+| + +++|++++.|+. |++|++... +++..+ .|.+.|.+++|+++.+|++
T Consensus 202 ~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~-----i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 269 (615)
T 1pgu_A 202 HHKQGSFVRDVEFSP----DSGEFVITVGSDRK-----ISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWLDSQKFAT 269 (615)
T ss_dssp SSCTTCCEEEEEECS----TTCCEEEEEETTCC-----EEEEETTTC---CEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred cCCCCceEEEEEECC----CCCCEEEEEeCCCe-----EEEEECCCC---CEeEEecccccccCCceEEEEEcCCCEEEE
Confidence 566 899999999 7 899999999865 779999553 333444 7889999999986789999
Q ss_pred EcCCCcEEEEEccCceeeeeeccC-CccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc--------
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENS-GFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL-------- 157 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~-~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~-------- 157 (343)
++.||.|++|++...+.+...... ..+...+.++.+. +..+++++.||.|++||+.+++ +...+..|..
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~ 348 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-VLKTISGHNKGITALTVN 348 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-EEEEECCCSSCEEEEETT
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-EEEEEeCCCCCEEEEEec
Confidence 999999999999866655444322 2345678888887 9999999999999999998753 3333333322
Q ss_pred ------------------------cceEEEEeCCCCEEEEEeCCCcEEEEEccccCC-----------------------
Q 019258 158 ------------------------VGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS----------------------- 190 (343)
Q Consensus 158 ------------------------~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~----------------------- 190 (343)
..|.+++|.+...+++++.|+.|++||++....
T Consensus 349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred CcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 145555553356677777777777776653100
Q ss_pred --------CCCeeE-----------------------------Eeccc-----CCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 191 --------GGPVLQ-----------------------------FKGNF-----GSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 191 --------~~~~~~-----------------------------~~~~~-----~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
++++.. +.... .....+...|.+++|+|++. ++++|+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~ 507 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGD 507 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEE
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC-EEEEcC
Confidence 000000 00000 00111237899999999986 568999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee----------cCCCCcCCCCCccceEEEecCCeEEE
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC----------HTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p----------~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
.||.|++||+++.+....+. ..|...|.+++|+| ++. +|++++.||.|++
T Consensus 508 ~dg~i~iw~~~~~~~~~~~~----------~~h~~~v~~~~~sp~~~~~~~~~~~~~----------~l~~~~~dg~i~i 567 (615)
T 1pgu_A 508 VMGKILLYDLQSREVKTSRW----------AFRTSKINAISWKPAEKGANEEEIEED----------LVATGSLDTNIFI 567 (615)
T ss_dssp TTSCEEEEETTTTEEEECCS----------CCCSSCEEEEEECCCC------CCSCC----------EEEEEETTSCEEE
T ss_pred CCCeEEEeeCCCCcceeEee----------cCCCCceeEEEEcCccccccccccCCC----------EEEEEcCCCcEEE
Confidence 99999999998865443332 23899999999999 766 8999999999999
Q ss_pred EecCCC--cc-cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 299 VEQGEE--PF-ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 299 ~~~~~~--~~-~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
|+.... .. .+..+..+|.+++|+| ++. |++++.|+.|++|+
T Consensus 568 w~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 568 YSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWN 611 (615)
T ss_dssp EESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred EECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEe
Confidence 998643 32 3334467899999999 457 99999999999997
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=246.96 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=152.8
Q ss_pred ccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 13 HRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
...+|...|.+|+|+| +++|++++.|+. |++|++... +++..+.+.+.|++++|+ ++++|++|+.|
T Consensus 53 ~~~~~~~~V~~l~fsp-----g~~L~S~s~D~~-----v~lWd~~~~---~~~~~~~~~~~V~~v~~sp~g~~l~sgs~d 119 (902)
T 2oaj_A 53 IKLEDRSAIKEMRFVK-----GIYLVVINAKDT-----VYVLSLYSQ---KVLTTVFVPGKITSIDTDASLDWMLIGLQN 119 (902)
T ss_dssp EECSSCCCEEEEEEET-----TTEEEEEETTCE-----EEEEETTTC---SEEEEEECSSCEEEEECCTTCSEEEEEETT
T ss_pred EEcCCCCCEEEEEEcC-----CCEEEEEECcCe-----EEEEECCCC---cEEEEEcCCCCEEEEEECCCCCEEEEEcCC
Confidence 3456778899999999 448999999965 779999653 334555678899999999 88999999999
Q ss_pred CcEEEEEccCceeeeee--------ccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCC-----
Q 019258 92 GSLHVLSSAMQVLLSVD--------ENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN----- 155 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~--------~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~----- 155 (343)
|.|++||+......... .....|.++|++++|+ +..+++++.||+| +||+++++ +...+..+
T Consensus 120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~~~~~~~~~g~ 197 (902)
T 2oaj_A 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IKQSFIYELPPFA 197 (902)
T ss_dssp SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EEEEECCCBCTTC
T ss_pred CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eEEEEecccCCcC
Confidence 99999999855432110 2235699999999998 3589999999999 99999984 55555443
Q ss_pred ------------CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeE--Ee---cccCC----CC--CcccCe
Q 019258 156 ------------GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FK---GNFGS----QG--KASGMI 211 (343)
Q Consensus 156 ------------~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~---~~~~~----~~--~~~~~i 211 (343)
+...|.+++|+| +..|++++.|++|++||++. ++++.. +. .+... .+ .+..+|
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~---g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS---GHMIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT---CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred CCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 112699999999 88999999999999999988 565542 21 11100 00 012468
Q ss_pred EEEEEc----CCCCeEEEEEecC-----CcEEEEEc
Q 019258 212 HSVDIH----PSRKHTCLAGGSS-----GTVFAWDL 238 (343)
Q Consensus 212 ~~v~~~----p~~~~~~~sg~~d-----g~v~iwd~ 238 (343)
.+++|+ |++..++++|+.| +.+.+|++
T Consensus 275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 899995 4434667777665 26777773
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=238.64 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=180.8
Q ss_pred cCCCCCCeeEEEcc-CC---------CeEEE-------------------EcCCCcEEEEEccCceee-eeeccCCcccc
Q 019258 67 QWTPPTRISSLSTS-HQ---------SLVAA-------------------STLSGSLHVLSSAMQVLL-SVDENSGFHVG 116 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~---------~~l~~-------------------~s~dg~v~v~~~~~~~~~-~~~~~~~~h~~ 116 (343)
.+.+.+.|.+|+|+ ++ .+|++ ++.|++|+||++...+.. ........|.+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~ 208 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG 208 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence 45567888899988 33 45555 457889999999754321 11111124678
Q ss_pred CeEEEEec-C-------CEEEEEeCCCcEEEEECCCCce----------EEEEEcCCCccceEEEEeCCCCEEEEEeCCC
Q 019258 117 PISGVDLT-G-------SECVSVGEDGRVNLVSVIGGGE----------FKRVYDGNGLVGFNCVKWASPTEFVTGGFGY 178 (343)
Q Consensus 117 ~v~~~~~~-~-------~~~~s~s~dg~v~~wd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~ 178 (343)
.|.+++|+ . ..|++++.||+|++||+.++.. +...+..|.. .|++++|++...|++|+.||
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~-~v~sv~~s~~~~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS-LITTFDFLSPTTVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT-CEEEEEESSSSEEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC-CEEEEEecCCCeEEEEeCCC
Confidence 99999998 3 5899999999999999976521 1123445555 89999999977899999999
Q ss_pred cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE--EEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc
Q 019258 179 GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV--DIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV 256 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 256 (343)
+|++||++. ...+...+..|. .+|.+| +|+|++..+|++|+.||+|++||+++.+.+..+.
T Consensus 288 tV~lWD~~~--~~~~~~~~~~H~-------~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-------- 350 (524)
T 2j04_B 288 FVAEFDLTD--PEVPSFYDQVHD-------SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-------- 350 (524)
T ss_dssp EEEEEETTB--CSSCSEEEECSS-------SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--------
T ss_pred EEEEEECCC--CCCceEEeeccc-------ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--------
Confidence 999999987 234455577665 789999 4667654688999999999999999865544433
Q ss_pred ccCCcc--ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEcc
Q 019258 257 THSLSE--SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 257 ~~~~h~--~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
+|. ..|++++|+|++. .+++++.|++|++|+.... ...+..+..+|++++++| ++..|++|+
T Consensus 351 ---~~~~~~~v~~v~fsp~~~----------~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs 416 (524)
T 2j04_B 351 ---SRFRGSNLVPVVYCPQIY----------SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGS 416 (524)
T ss_dssp ---EECSCCSCCCEEEETTTT----------EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEE
T ss_pred ---cccccCcccceEeCCCcC----------eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEE
Confidence 233 3488999999877 6899999999999986532 244455567999999999 679999999
Q ss_pred CCceEEEEe
Q 019258 333 EWESIAIVS 341 (343)
Q Consensus 333 ~~~~i~~~~ 341 (343)
+|+.|++|+
T Consensus 417 ~Dgtv~lwd 425 (524)
T 2j04_B 417 ADGSLIITN 425 (524)
T ss_dssp TTTEEECCB
T ss_pred CCCEEEEEe
Confidence 999999986
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-28 Score=222.06 Aligned_cols=240 Identities=15% Similarity=0.221 Sum_probs=189.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|...|.+|+|+| ++++|++|+.|+. +++|++...... .....|...+.++.+. +..|++|+.|+.++
T Consensus 145 ~~~~~V~sv~fsp----dg~~lasgs~Dg~-----v~iWd~~~~~~~--~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 145 QPGEYISSVAWIK----EGNYLAVGTSSAE-----VQLWDVQQQKRL--RNMTSHSARVGSLSWN-SYILSSGSRSGHIH 212 (420)
T ss_dssp STTCCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTTEEE--EEECCCSSCEEEEEEE-TTEEEEEETTSEEE
T ss_pred CCCCcEEEEEECC----CCCEEEEEECCCe-----EEEEEcCCCcEE--EEEeCCCCceEEEeeC-CCEEEEEeCCCcee
Confidence 4677899999999 8999999999975 779999653221 2334688889998886 78999999999999
Q ss_pred EEEccCce-eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce---EEEEEcCCCccceEEEEeCC--
Q 019258 96 VLSSAMQV-LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVKWAS-- 167 (343)
Q Consensus 96 v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~-- 167 (343)
+|+..... .+... ..|...+..+.+. +..+++++.|+.+++||..+++. .......+.. .|.+++|+|
T Consensus 213 ~~d~~~~~~~~~~~---~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~p~~ 288 (420)
T 4gga_A 213 HHDVRVAEHHVATL---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQ 288 (420)
T ss_dssp EEETTSSSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS-CEEEEEECTTC
T ss_pred EeeecccceeeEEe---cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC-ceeeeeeCCCc
Confidence 99987432 22222 3688999999998 89999999999999999976531 2333444554 799999999
Q ss_pred CCEEEEE--eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCcee
Q 019258 168 PTEFVTG--GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 168 ~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~ 244 (343)
...++++ +.|++|++||+++ +.++..+..+ ..+.++.|+|++..++++ |+.||.|++||+++.+..
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~--------~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCS---GACLSAVDAH--------SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTT---TEEEEEEECS--------SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ccEEEEEeecCCCEEEEEeCCc---cccceeeccc--------cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 5556554 4699999999998 6666666543 569999999998877654 347999999999986544
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..+ .+|.+.|++|+|+|++. .|+|||.||+|++|+...
T Consensus 358 -~~l----------~gH~~~V~~l~~spdg~----------~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 358 -AEL----------KGHTSRVLSLTMSPDGA----------TVASAAADETLRLWRCFE 395 (420)
T ss_dssp -EEE----------CCCSSCEEEEEECTTSS----------CEEEEETTTEEEEECCSC
T ss_pred -EEE----------cCCCCCEEEEEEcCCCC----------EEEEEecCCeEEEEECCC
Confidence 444 57999999999999988 799999999999999643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=257.42 Aligned_cols=284 Identities=12% Similarity=0.128 Sum_probs=224.5
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
+...|.+++|+| +++++++|+.|+. +++|++...... .....|.+.|.+++|+ ++..|++++.||.|+
T Consensus 960 ~~~~i~~~~~sp----~g~~l~~g~~~g~-----i~i~d~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 960 PEAQVSCCCLSP----HLEYVAFGDEDGA-----IKIIELPNNRVF--SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp CCSCEEEEEECT----TSSEEEEEETTSC-----CEEEETTTTSCE--EECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred ccCcEEEEEEcC----CCCEEEEEcCCCC-----EEEEEcCCCcee--eecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 345799999999 8899999998865 669999653322 2234688999999999 889999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t 173 (343)
+|++...+.... ..|...|.++.++ +..+++++.||+|++||+.+++ ....+..|.. .|.+++|+| +..+++
T Consensus 1029 vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~-~v~~~~~s~d~~~l~s 1102 (1249)
T 3sfz_A 1029 VWNWQTGDYVFL----QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFTCHQG-TVLSCAISSDATKFSS 1102 (1249)
T ss_dssp EEETTTTEEECC----BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEECCSS-CCCCEEECSSSSSCEE
T ss_pred EEECCCCceEEE----ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEcccCC-cEEEEEECCCCCEEEE
Confidence 999986654432 3688999999999 8899999999999999999985 4445555655 799999999 888999
Q ss_pred EeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 174 GGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
++.|++|++||+.. +.++..+.+|. +.|.+++|+|++. ++++|+.||.|++||+++++....+......
T Consensus 1103 ~s~d~~v~iwd~~~---~~~~~~l~~h~-------~~v~~~~~s~dg~-~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A 1103 TSADKTAKIWSFDL---LSPLHELKGHN-------GCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp ECCSSCCCEECSSS---SSCSBCCCCCS-------SCEEEEEECSSSS-EEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred EcCCCcEEEEECCC---cceeeeeccCC-------CcEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence 99999999999988 67777777665 7899999999986 5689999999999999876543322100000
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEc
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~ 331 (343)
.....|.+.|.+++|+|++. ++++++ |.|++|+.... ...+.....+|.++.++| ++.+|+++
T Consensus 1172 --~~~~~~~~~v~~l~fs~dg~----------~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~-dg~~l~~~ 1236 (1249)
T 3sfz_A 1172 --EGTATHGGWVTDVCFSPDSK----------TLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTV 1236 (1249)
T ss_dssp -------CCSCCCEEEECTTSS----------CEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECS-SSCCEEEE
T ss_pred --ccccccCceEEEEEECCCCC----------EEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECC-CCCEEEEe
Confidence 00135889999999999987 677775 89999996432 334344567899999999 67999999
Q ss_pred cCCceEEEEeCC
Q 019258 332 LEWESIAIVSRP 343 (343)
Q Consensus 332 ~~~~~i~~~~~~ 343 (343)
++++.|++|+-+
T Consensus 1237 ~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1237 DNLGILYILQVL 1248 (1249)
T ss_dssp CTTCCEEEECCC
T ss_pred cCCcEEEEEeec
Confidence 999999999853
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-28 Score=216.84 Aligned_cols=270 Identities=10% Similarity=-0.000 Sum_probs=192.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSG 92 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg 92 (343)
-.|...|.+|+|+| ++.+|++|+.|+ +++|++... .......+ ..+..+++. .++.+ ++++.|+
T Consensus 16 ~~h~~~V~~v~fs~----dg~~la~g~~~~------~~iw~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ----DQSCLILSTLKS------FEIYNVHPV---AHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ---CCCCCEEEECT----TSSEEEEECSSE------EEEEEETTE---EEEEEEEC-SCCCEEEECTTSSEEEEECSSTT
T ss_pred ccCCCceEEEEECC----CCCEEEEEcCCE------EEEEecCCc---ceeeeeec-CCeEEEEEcCCCCEEEEEECCcc
Confidence 35788999999999 899999998762 679998532 11112222 246667776 45555 6677889
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCC-ceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGG-GEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
+|++||..+.+.+.... |..+|.++.++.+.++.+. |+.|++||+.+. +....+ .. . ...+++++ ..+
T Consensus 82 ~v~iWd~~~~~~~~~~~----~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~-~~--~--~~~~~~s~-~~l 150 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK----VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDD-IR--F--GGVCEFSN-GLL 150 (355)
T ss_dssp EEEEEETTTTEEEEEEE----CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCC-EE--E--EEEEEEET-TEE
T ss_pred EEEEEECCCCcEEEEEE----CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEe-cc--C--CceEEEEc-cEE
Confidence 99999998766554442 5668999999966666654 788999999876 322222 11 1 22334444 556
Q ss_pred EE--EeCCCcEEEEEccccCCCC---------------C-eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-
Q 019258 172 VT--GGFGYGLQWWDLRRAGSGG---------------P-VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT- 232 (343)
Q Consensus 172 ~t--~~~d~~i~iwd~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~- 232 (343)
+. ++.||.|++||++. +. + +..+.+|. ++|.+++|+|++. ++++|+.||+
T Consensus 151 a~~sg~~~g~v~iwd~~~---~~~~~~~~~~~~~~~~~p~~~~~~~h~-------~~v~~~~~s~~g~-~l~s~s~d~~~ 219 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQS---SGSATTQDQGVQQKAILGKGVLIKAHT-------NPIKMVRLNRKSD-MVATCSQDGTI 219 (355)
T ss_dssp EEEESSCTTCEEEEECCC---------------------CCEEECCCS-------SCEEEEEECTTSS-EEEEEETTCSE
T ss_pred EEeCCCcCcEEEEEECCC---CCccccccccccccccCcccEEEEccC-------CceEEEEECCCCC-EEEEEeCCCCE
Confidence 55 47799999999987 33 2 55566665 8899999999875 5789999998
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc----c
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF----E 307 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~----~ 307 (343)
|++||+++++....+. .+ |...|.+++|+|++. +|++++.||+|++|+...... .
T Consensus 220 v~iwd~~~~~~~~~~~----------~g~h~~~v~~~~~s~~~~----------~l~s~s~d~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFR----------RGLDRADVVDMKWSTDGS----------KLAVVSDKWTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp EEEEETTTCCEEEEEE----------CTTCCSCEEEEEECTTSC----------EEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred EEEEECCCCcEEEEEE----------cCCCCCcEEEEEECCCCC----------EEEEEECCCEEEEEEccCCCCccccc
Confidence 9999999876655554 34 899999999999987 799999999999999743211 0
Q ss_pred ccc-------------------c--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 308 LLA-------------------E--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 308 ~~~-------------------~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.. . ..+...++|++ +++.|+.++.++.+++|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 000 0 12236788998 568999999999998875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=208.66 Aligned_cols=235 Identities=13% Similarity=0.206 Sum_probs=189.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCc-cCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHS-QWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|...|.+++|+| +++++++|+.|+. +++|++.......+.. ...|...|.++.| +++.|++++.||.|
T Consensus 57 ~~~~~v~~~~~~~----~~~~l~~~~~dg~-----i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i 126 (313)
T 3odt_A 57 TGQGFLNSVCYDS----EKELLLFGGKDTM-----INGVPLFATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTA 126 (313)
T ss_dssp ECSSCEEEEEEET----TTTEEEEEETTSC-----EEEEETTCCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEE
T ss_pred cCCccEEEEEECC----CCCEEEEecCCCe-----EEEEEeeecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCE
Confidence 4677899999999 8999999999975 6799986543333333 3458889999999 48899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcC-CCccceEEEEeCCCCE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDG-NGLVGFNCVKWASPTE 170 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 170 (343)
++|+.. +..... ..|..++.++.+. ++.+++++.||.|++||.. .....+.. +.. .+.+++|++...
T Consensus 127 ~~~d~~--~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~-~i~~~~~~~~~~ 197 (313)
T 3odt_A 127 KVWKEG--SLVYNL---QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHND-VVRHLAVVDDGH 197 (313)
T ss_dssp EEEETT--EEEEEE---ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSS-CEEEEEEEETTE
T ss_pred EEEcCC--cEEEec---ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcc-cEEEEEEcCCCe
Confidence 999932 222222 2588899999986 8899999999999999933 23444444 444 899999999666
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
+++++.|+.|++||++. ++++..+..+. .+|.+++|+|++ . +++|+.||.|++||+++.+....+
T Consensus 198 ~~~~~~dg~i~i~d~~~---~~~~~~~~~~~-------~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~~--- 262 (313)
T 3odt_A 198 FISCSNDGLIKLVDMHT---GDVLRTYEGHE-------SFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSLKQVI--- 262 (313)
T ss_dssp EEEEETTSEEEEEETTT---CCEEEEEECCS-------SCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCEEEEE---
T ss_pred EEEccCCCeEEEEECCc---hhhhhhhhcCC-------ceEEEEEEecCC-C-EEEEecCCEEEEEECCCCceeEEE---
Confidence 99999999999999998 77888887665 789999999987 3 678999999999999986544443
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|...|.+++|+|++. +++++.||.|++|+...
T Consensus 263 --------~~~~~~i~~~~~~~~~~-----------~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 263 --------TLPAISIWSVDCMSNGD-----------IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp --------ECSSSCEEEEEECTTSC-----------EEEEETTSCEEEEESCG
T ss_pred --------eccCceEEEEEEccCCC-----------EEEEeCCCcEEEEeCCC
Confidence 45788999999999864 67899999999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=224.01 Aligned_cols=256 Identities=10% Similarity=-0.016 Sum_probs=177.4
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCC-CCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPA-SLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~-~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|...|.+++|+| ++++|++++.|+. +++|++.... .........|...|.+++|+ ++.+|++++.||.
T Consensus 53 ~h~~~v~~~~~s~----~~~~l~s~s~d~~-----v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 123 (377)
T 3dwl_C 53 DHDKIVTCVDWAP----KSNRIVTCSQDRN-----AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV 123 (377)
T ss_dssp CCSSCEEEEEECT----TTCCEEEEETTSS-----EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC
T ss_pred cCCceEEEEEEeC----CCCEEEEEeCCCe-----EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe
Confidence 4788999999999 7899999999975 7799996544 12223445788999999999 8889999999999
Q ss_pred EEEEEccCceeeeeeccCCc-cccCeEEEEec--CCEEEEEeCCCcEEEEECCCC-----------------ceEEEEEc
Q 019258 94 LHVLSSAMQVLLSVDENSGF-HVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG-----------------GEFKRVYD 153 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~-----------------~~~~~~~~ 153 (343)
|++|++...+.......... |...|.+++|+ +..+++++.|++|++||+... ..+...+
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 99999985543212221223 89999999998 789999999999999998521 1233333
Q ss_pred CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC----eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 154 GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP----VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 154 ~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.|.. .|.+++|+| +..|++++.|+.|++||++. ++. +..+..+. .+|.+++|+|++. ++++|+
T Consensus 203 ~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~-~l~~~~ 270 (377)
T 3dwl_C 203 PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSA---PEQPPRALITVKLSQ-------LPLRSLLWANESA-IVAAGY 270 (377)
T ss_dssp CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECS---TTSCEEECCCEECSS-------SCEEEEEEEETTE-EEEEES
T ss_pred cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCC---CCCcceeeEeecCCC-------CceEEEEEcCCCC-EEEEEc
Confidence 4544 799999999 88899999999999999998 555 45566554 7899999999975 567776
Q ss_pred cCCcEEEEEccCCc-eeeeeecC-----------------------------------CC-----CcccccCCccccEEE
Q 019258 229 SSGTVFAWDLRWQQ-QSIVLSGV-----------------------------------GT-----GEAVTHSLSESEVWE 267 (343)
Q Consensus 229 ~dg~v~iwd~~~~~-~~~~~~~~-----------------------------------~~-----~~~~~~~~h~~~v~~ 267 (343)
.++.+ +|+..... .....+.. .. ........|...|.+
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~ 349 (377)
T 3dwl_C 271 NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT 349 (377)
T ss_dssp SSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE
T ss_pred CCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEE
Confidence 65555 77664211 00000000 00 000111349999999
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
|++.+.... ....++|||.||.|++|+
T Consensus 350 ~~~~~~~~~------~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 350 LRPYAGTPG------NITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp EEEEEEETT------EEEEEEEEETTSEEEEEC
T ss_pred EeccCCCCC------ceEEEEeecCCCcEEEec
Confidence 998776541 001389999999999997
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=239.23 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=190.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~ 142 (343)
..|.+.|++++|+ ++++|++|+.||.|++|++........ .....|.++|+++.|+ ++.+++++.||.|++||+
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 4688999999999 888999999999999999974322222 2223699999999997 678999999999999999
Q ss_pred CCCce-EEEEEcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 143 IGGGE-FKRVYDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.++.. .......|.. .|.+++|+| +..+++++.|+.|++||++... ......+..+. ..|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~~~~~~~-------~~v~~l~~~p 155 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHA-------IGVNSASWAP 155 (753)
T ss_dssp ETTEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCEEEECCS-------SCEEEEEECC
T ss_pred CCCcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-CcceeEeecCC-------CceEEEEecC
Confidence 98741 3444455555 899999998 5789999999999999998811 12233444443 7899999999
Q ss_pred C------------CCeEEEEEecCCcEEEEEccCCcee---eeeecCCCCcccccCCccccEEEEEEeec---CCCCcCC
Q 019258 219 S------------RKHTCLAGGSSGTVFAWDLRWQQQS---IVLSGVGTGEAVTHSLSESEVWEVQYDCH---TKSSNIS 280 (343)
Q Consensus 219 ~------------~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~~~~~ 280 (343)
. ...++++|+.||.|++||++..... .... ..|...|.+++|+|+ +.
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~----------~~h~~~V~~l~~sp~~~~~~----- 220 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL----------EGHSDWVRDVAWSPTVLLRS----- 220 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE----------CCCSSCEEEEEECCCCSSSE-----
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee----------cCCCCcEEEEEeccCCCCCC-----
Confidence 5 2346789999999999999876432 2333 579999999999999 55
Q ss_pred CCCccceEEEecCCeEEEEecCCCc-------ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 281 SSRVLPAMFCSEDGILAVVEQGEEP-------FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~~~~-------~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+++++.||.|++|+..... .........|.+++++| ++.++++|+.++.|++|+
T Consensus 221 -----~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 221 -----YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp -----EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCB
T ss_pred -----EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEe
Confidence 79999999999999975431 11122356899999999 679999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-28 Score=217.59 Aligned_cols=238 Identities=15% Similarity=0.123 Sum_probs=184.5
Q ss_pred CCCCCCeeEEEcc-CC-CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEEC
Q 019258 68 WTPPTRISSLSTS-HQ-SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~-~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~ 142 (343)
..|.+.|.+++|+ ++ .+|++|+.||.|++|++...+....... ..|.+.|.++.|+ +..+++++.|+.|++||+
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence 4688999999999 55 8999999999999999986554443332 2599999999998 478999999999999999
Q ss_pred CCCceEEEEEcCCC-ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 143 IGGGEFKRVYDGNG-LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 143 ~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
++. .......... ...+.+++|+| +..|++++.|+.|++||++ ++++..+..+. ..|.+++|+|++
T Consensus 149 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~h~-------~~v~~~~~~~~~ 216 (383)
T 3ei3_B 149 SGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFKEKLHK-------AKVTHAEFNPRC 216 (383)
T ss_dssp TSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEEEECSS-------SCEEEEEECSSC
T ss_pred CCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEEeccCC-------CcEEEEEECCCC
Confidence 975 3444433221 12699999999 8899999999999999994 46777777665 789999999998
Q ss_pred CeEEEEEecCCcEEEEEccCCce---eeeeecCCCCcccccCCccccEEEEEEee-cCCCCcCCCCCccceEEEecCCeE
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQ---SIVLSGVGTGEAVTHSLSESEVWEVQYDC-HTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+.++++|+.||.|++||+++... .... ..|...|.+++|+| ++. .|++++.||.|
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~----------~l~~~~~d~~i 275 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAE-----------MPHEKPVNAAYFNPTDST----------KLLTTDQRNEI 275 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEE-----------EECSSCEEEEEECTTTSC----------EEEEEESSSEE
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEE-----------ecCCCceEEEEEcCCCCC----------EEEEEcCCCcE
Confidence 86889999999999999987322 2222 24889999999999 766 79999999999
Q ss_pred EEEecCCC--ccccccc-------c----------cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 297 AVVEQGEE--PFELLAE-------P----------CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 297 ~~~~~~~~--~~~~~~~-------~----------~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
++|+.... ...+..+ . ..+..+.++| ++.+ +|++++.|++|+.
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDA 337 (383)
T ss_dssp EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEET
T ss_pred EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEec
Confidence 99997532 2222211 1 2233466676 3455 7889999999974
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=226.31 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=180.9
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--------eeeeccCCccc------------cCeEEEEec-
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--------LSVDENSGFHV------------GPISGVDLT- 124 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--------~~~~~~~~~h~------------~~v~~~~~~- 124 (343)
.+++.+.|++++|+ ++.+|++|+.||.|+||++...+. ........+|. ++|+++.|+
T Consensus 24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46678899999999 889999999999999999984431 11122223577 889999999
Q ss_pred -C--CEEEEEeCCCcEEEEECCCCceE--------------------------------------EEEE-cCCCccceEE
Q 019258 125 -G--SECVSVGEDGRVNLVSVIGGGEF--------------------------------------KRVY-DGNGLVGFNC 162 (343)
Q Consensus 125 -~--~~~~s~s~dg~v~~wd~~~~~~~--------------------------------------~~~~-~~~~~~~v~~ 162 (343)
+ ..+++++.|++|++||+.++... ...+ ..|.. .|.+
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~ 182 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-HINS 182 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS-CCCE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc-ceEE
Confidence 4 68999999999999998763211 1122 34554 8999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 163 VKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 163 ~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++|+| +..|+++ .|+.|++||++. ....+..+.........+...|.+++|+|++..++++|+.||.|++||+++.
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEI--TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTE--EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCC--CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 99999 7788887 899999999985 1333332211000000122789999999998567899999999999999986
Q ss_pred cee---eeeecCCCCcccccCCccc------------cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--C
Q 019258 242 QQS---IVLSGVGTGEAVTHSLSES------------EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--E 304 (343)
Q Consensus 242 ~~~---~~~~~~~~~~~~~~~~h~~------------~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~ 304 (343)
... ...+ ..|.. .|.+++|+|++. +|++++. |.|++|+... .
T Consensus 260 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----------~l~~~~~-~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 260 ALCDRHSKLF----------EEPEDPSNRSFFSEIISSISDVKFSHSGR----------YMMTRDY-LSVKVWDLNMENR 318 (447)
T ss_dssp SSSCTTCEEE----------CCC-----CCHHHHHTTCEEEEEECTTSS----------EEEEEES-SEEEEEETTCCSS
T ss_pred ccccceeeEe----------ccCCCccccccccccCceEEEEEECCCCC----------EEEEeeC-CeEEEEeCCCCcc
Confidence 541 2333 34544 899999999887 7888888 9999999753 2
Q ss_pred cccccccccc----------------cceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 305 PFELLAEPCA----------------INSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 305 ~~~~~~~~~~----------------i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
....+..+.. +.+++|+| ++.+|++|+.|+.|++|+.
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEET
T ss_pred ccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEc
Confidence 2222222222 33489999 5799999999999999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=221.31 Aligned_cols=254 Identities=12% Similarity=0.068 Sum_probs=192.6
Q ss_pred CcccceeeEEecCCCCCCC---CeEEEEeecCCCCCCceeeeeCCCCCCCC---CCccCCC-----CCCeeEEEcc----
Q 019258 16 PQSKYIDAVRWLPPLSPLS---KLAVLAIYDTDADSPSLETHSISLPASLT---PHSQWTP-----PTRISSLSTS---- 80 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~---~~l~t~s~D~~~~~~~l~~w~~~~~~~~~---~~~~~~~-----~~~v~~v~~~---- 80 (343)
.|...|.+++|+|....++ ++|++++.|+. |++|++....... ......| ...|.+++|+
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGD-----LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC-----EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCC-----EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence 5788999999999111128 89999999965 7799995433200 1222234 4889999998
Q ss_pred -CCCe-EEEEcCCCcEEEEEccC------ceeee-----eec----cCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 81 -HQSL-VAASTLSGSLHVLSSAM------QVLLS-----VDE----NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 81 -~~~~-l~~~s~dg~v~v~~~~~------~~~~~-----~~~----~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
++.. |++++.||.|++|++.. .+.+. ... ....|...|.++.|+ + .+++++.||.|++||
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence 5677 99999999999999986 43332 111 012478899999999 6 999999999999999
Q ss_pred CCCCceEEEEEcC---C---CccceEEEEeCC-CCEEEEEeCC---CcEEEEEccccCCCCCeeEEec------------
Q 019258 142 VIGGGEFKRVYDG---N---GLVGFNCVKWAS-PTEFVTGGFG---YGLQWWDLRRAGSGGPVLQFKG------------ 199 (343)
Q Consensus 142 ~~~~~~~~~~~~~---~---~~~~v~~~~~~~-~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~------------ 199 (343)
+++++ ....+.. | .. .+.+++|+| +..|++++.| +.|++||++. ++++..+..
T Consensus 214 ~~~~~-~~~~~~~~~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 214 LSTLR-PLYNFESQHSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp TTTTE-EEEEEECCC---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC--------CCB
T ss_pred CCCCc-eeEEEeccccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCC---CcccceeccCccccccccccc
Confidence 99884 5555555 4 44 799999999 8899999999 9999999998 777777765
Q ss_pred -ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCc---------------cc
Q 019258 200 -NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLS---------------ES 263 (343)
Q Consensus 200 -~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h---------------~~ 263 (343)
+. ..|.+++|+|++. ++++|+.||.|++||+++.+....+.... ....| ..
T Consensus 289 ~~~-------~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 289 AHS-------SWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHC-----DDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp SBS-------SCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCG-----GGCSSGGGCCCBCTTSCBCSSC
T ss_pred ccC-------CcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEeccc-----CcccchhhhhccccccccccCC
Confidence 43 7899999999876 56899999999999998865444433000 00034 89
Q ss_pred cEEEEEEeecCC---------CCcCCCCCccceEEEecCCeEEEEecC
Q 019258 264 EVWEVQYDCHTK---------SSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 264 ~v~~v~~~p~~~---------~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.|.+++|+|++. . .|++++.||.|++|+..
T Consensus 356 ~v~~~~~~~~g~~~~~~~~~~~---------~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 356 GVFDVKFLKKGWRSGMGADLNE---------SLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CEEEEEEECTTTSBSTTCTTSC---------EEEEEETTTEEEEEEEE
T ss_pred ceeEEEeccccccccccccccc---------eEEEecCCCcEEEEEcC
Confidence 999999999972 3 79999999999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-28 Score=230.88 Aligned_cols=278 Identities=11% Similarity=0.087 Sum_probs=213.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CC-CccCCCCCC-eeEEEcc---CCCeEEEEc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TP-HSQWTPPTR-ISSLSTS---HQSLVAAST 89 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~-~~~~~~~~~-v~~v~~~---~~~~l~~~s 89 (343)
+|...|.+++|+| ++++|++++ |+ .+.+|++...... .. .....|.+. |.+++|+ ++.+|++++
T Consensus 16 ~~~~~v~~~~~sp----dg~~l~~~~-~~-----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~ 85 (615)
T 1pgu_A 16 TQRNFTTHLSYDP----TTNAIAYPC-GK-----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 85 (615)
T ss_dssp CCTTCCCCCEEET----TTTEEEEEE-TT-----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred CccCceeEEEECC----CCCEEEEec-CC-----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec
Confidence 5678899999999 899999998 43 4789999643111 22 233468888 9999998 467899999
Q ss_pred CCCcEEEEEccCc------eeeeeeccCCccccCeEEEEec--CCEEEEEeCC----CcEEEEECCCCceEEEEEcCCCc
Q 019258 90 LSGSLHVLSSAMQ------VLLSVDENSGFHVGPISGVDLT--GSECVSVGED----GRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 90 ~dg~v~v~~~~~~------~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d----g~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
.||.|++|++... +... ......|..+|.++.|+ ++.+++++.+ +.|.+|| .++ ....+..|..
T Consensus 86 ~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~-~~~~~~~~~~ 161 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESNSVEVNV-KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN-SLGEVSGHSQ 161 (615)
T ss_dssp TTSEEEEEEEEEEGGGTEEEEEE-EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC-EEEECCSCSS
T ss_pred CCCEEEEEeCCCCcccccccccc-cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC-cceeeecCCc
Confidence 9999999999633 1121 22223588999999999 8899999988 6888888 332 4455556665
Q ss_pred cceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc---CeEEEEEcCC-CCeEEEEEecCC
Q 019258 158 VGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG---MIHSVDIHPS-RKHTCLAGGSSG 231 (343)
Q Consensus 158 ~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~p~-~~~~~~sg~~dg 231 (343)
.|.+++|+| +. .+++++.|+.|++||++. .+.+..+..+. . .|.+++|+|+ +. ++++|+.||
T Consensus 162 -~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-~l~~~~~dg 229 (615)
T 1pgu_A 162 -RINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHH-------KQGSFVRDVEFSPDSGE-FVITVGSDR 229 (615)
T ss_dssp -CEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSS-------CTTCCEEEEEECSTTCC-EEEEEETTC
T ss_pred -cEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccC-------CCCceEEEEEECCCCCC-EEEEEeCCC
Confidence 899999999 44 899999999999999988 67777777655 5 7999999998 65 568999999
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccC---CccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccc
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHS---LSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFE 307 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~ 307 (343)
.|++||+++++....+. . .|...|.+++|+ ++. .+++++.||.|++|+.... ...
T Consensus 230 ~i~vwd~~~~~~~~~~~----------~~~~~~~~~v~~~~~~-~~~----------~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 230 KISCFDGKSGEFLKYIE----------DDQEPVQGGIFALSWL-DSQ----------KFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp CEEEEETTTCCEEEECC----------BTTBCCCSCEEEEEES-SSS----------EEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEEEECCCCCEeEEec----------ccccccCCceEEEEEc-CCC----------EEEEEcCCCcEEEEECCCCcEEE
Confidence 99999998866555442 2 689999999999 665 7999999999999997533 222
Q ss_pred cccc-----ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LLAE-----PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~~~-----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+.. ...+.++.+. ++.++++++.++.|++|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp EEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred EEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEEC
Confidence 2221 2456677765 3589999999999999974
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=243.55 Aligned_cols=250 Identities=13% Similarity=0.208 Sum_probs=193.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-C--CCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-H--QSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~--~~~l~~~s~dg 92 (343)
.|...|.+++|+| ++++|++|+.|+. |++|++.............|.+.|.+++|+ + +++|++|+.||
T Consensus 7 gH~~~V~~l~~s~----dg~~latg~~dg~-----I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 7 AHNELIHDAVLDY----YGKRLATCSSDKT-----IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -CCCCEEEECCCS----SSCCEEEEETTTE-----EEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred cCcceeEEEEECC----CCCeEEEEECCCc-----EEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 5888999999999 8899999999975 779998532222122334688999999998 5 88999999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCce-EEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGE-FKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|++|++...+...... ...|..+|+++.|+ +..+++++.||.|++||++++.. .......+.. .|.+++|+|
T Consensus 78 ~I~vwd~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-~v~~l~~~p 155 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-GVNSASWAP 155 (753)
T ss_dssp CEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-CEEEEEECC
T ss_pred eEEEEECCCCccccccc-ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-ceEEEEecC
Confidence 99999998654222222 23689999999998 57899999999999999987521 2223344544 799999998
Q ss_pred --------------CCEEEEEeCCCcEEEEEccccCCCCC----eeEEecccCCCCCcccCeEEEEEcCCC--CeEEEEE
Q 019258 168 --------------PTEFVTGGFGYGLQWWDLRRAGSGGP----VLQFKGNFGSQGKASGMIHSVDIHPSR--KHTCLAG 227 (343)
Q Consensus 168 --------------~~~l~t~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~v~~~p~~--~~~~~sg 227 (343)
+..+++++.||.|++||++. +.. ...+..|. ++|.+++|+|++ ..++++|
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~~~~~h~-------~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTYVLESTLEGHS-------DWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEET---TTTEEEEEEEECCCS-------SCEEEEEECCCCSSSEEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccC---CcccceeeeeecCCC-------CcEEEEEeccCCCCCCEEEEE
Confidence 57899999999999999998 432 23344443 789999999994 4678899
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+.||.|++||++....+..... .....|...|++++|+|++. .+++++.||.|++|+..
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~v~~l~~spdg~----------~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTL------LKEEKFPDVLWRASWSLSGN----------VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCB------SSSSCCSSCCCCEEECTTTC----------CEEEECSSSCEECCBCC
T ss_pred ecCCEEEEecCCCCCCcceeEE------eccCCCCCceEEEEEcCCCC----------EEEEEcCCCEEEEEecC
Confidence 9999999999988543221110 01145888999999999987 79999999999999865
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-28 Score=239.40 Aligned_cols=300 Identities=12% Similarity=0.087 Sum_probs=211.7
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcC
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTL 90 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~ 90 (343)
.+.++.|...|.+|+|+| ++++||+|+.|+. |++|+... .++...+.|...|.+++|+.+.+|++++.
T Consensus 10 ~~~~~gh~~~V~~lafsp----dg~~lAsgs~Dg~-----I~lw~~~~---~~~~~~~~~~~~V~~l~fspg~~L~S~s~ 77 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDF----TQNLLAIATVTGE-----VHIYGQQQ---VEVVIKLEDRSAIKEMRFVKGIYLVVINA 77 (902)
T ss_dssp EEEEEECSSCEEEEEEET----TTTEEEEEETTSE-----EEEECSTT---CEEEEECSSCCCEEEEEEETTTEEEEEET
T ss_pred cccccCCCCCcEEEEECC----CCCEEEEEeCCCE-----EEEEeCCC---cEEEEEcCCCCCEEEEEEcCCCEEEEEEC
Confidence 455667889999999999 8999999999975 77999854 22344456788999999997668999999
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE----------EEcCCCcc
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR----------VYDGNGLV 158 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~----------~~~~~~~~ 158 (343)
|++|++||+...+.+... .|.+.|+++.|+ ++++++|+.||+|++||++++..... ....|..
T Consensus 78 D~~v~lWd~~~~~~~~~~----~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~- 152 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTV----FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS- 152 (902)
T ss_dssp TCEEEEEETTTCSEEEEE----ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC-
T ss_pred cCeEEEEECCCCcEEEEE----cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC-
Confidence 999999999866555433 266789999998 89999999999999999998742211 1123444
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC-----------CCCcccCeEEEEEcCCCCeEEE
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS-----------QGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
.|.+++|+| ...+++++.|+.| +||++. ++++..+..+... ...+...|.+++|+|++. +|+
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~la 227 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HII 227 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEE
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEE
Confidence 799999999 3689999999999 999998 6666666644100 011226799999999976 568
Q ss_pred EEecCCcEEEEEccCCceeee--eec--CCCC-cccccC--CccccEEEEEEeecC----CCCcCCCCCccceEEEecC-
Q 019258 226 AGGSSGTVFAWDLRWQQQSIV--LSG--VGTG-EAVTHS--LSESEVWEVQYDCHT----KSSNISSSRVLPAMFCSED- 293 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~--~~~--~~~~-~~~~~~--~h~~~v~~v~~~p~~----~~~~~~~~~~~~l~s~s~d- 293 (343)
+|+.||+|++||+++++.... +.. .+.. ...... .|...|++++|++.. .. .+++++.|
T Consensus 228 sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~---------ll~sg~~~~ 298 (902)
T 2oaj_A 228 TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS---------LLISHKSIS 298 (902)
T ss_dssp EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE---------EEEEEECST
T ss_pred EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE---------EEEeCCCCC
Confidence 999999999999988543322 100 0000 000000 245689999997642 23 56777666
Q ss_pred ----CeEEEEecCC-------------------Ccccccc--cccccceeeecC---------CCCCeeEEccCCceEEE
Q 019258 294 ----GILAVVEQGE-------------------EPFELLA--EPCAINSFDIDP---------QNPSDVICSLEWESIAI 339 (343)
Q Consensus 294 ----g~i~~~~~~~-------------------~~~~~~~--~~~~i~s~~~~~---------~~~~~l~~~~~~~~i~~ 339 (343)
..+++|+... .....+. ....+.++.+.+ .++..+++++.++.|++
T Consensus 299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 3788887321 0111111 234556666543 13357888888999999
Q ss_pred Ee
Q 019258 340 VS 341 (343)
Q Consensus 340 ~~ 341 (343)
|+
T Consensus 379 ~~ 380 (902)
T 2oaj_A 379 ML 380 (902)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=209.80 Aligned_cols=238 Identities=15% Similarity=0.146 Sum_probs=189.5
Q ss_pred CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEE
Q 019258 65 HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd 141 (343)
.....|.+.|++++|+ ++.+|++++.||.|++|++...+.+... ..|.+.|.+++|+ ++.+++++.||.|++||
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh---hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 3345789999999999 8899999999999999999866555443 3689999999998 88999999999999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC-----CcEEEEEccccCCC--------CCeeEEecccCCCCCc
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG-----YGLQWWDLRRAGSG--------GPVLQFKGNFGSQGKA 207 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d-----~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~ 207 (343)
+.+++ ....+. +.. .+.+++|+| +..+++++.+ +.|++||++..... .++..+..+. .
T Consensus 103 ~~~~~-~~~~~~-~~~-~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 174 (369)
T 3zwl_B 103 VSNGQ-CVATWK-SPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE-----G 174 (369)
T ss_dssp TTTCC-EEEEEE-CSS-CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT-----T
T ss_pred CCCCc-EEEEee-cCC-CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc-----C
Confidence 99985 444444 333 699999999 8889999988 99999999881111 1222233222 0
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
...+.+++|+|++. .+++|+.||.|++||++....+.... ..|...|.+++|+|++. .|
T Consensus 175 ~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~----------~l 233 (369)
T 3zwl_B 175 LDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSI----------DLHEKSISDMQFSPDLT----------YF 233 (369)
T ss_dssp CCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEE----------ECCSSCEEEEEECTTSS----------EE
T ss_pred ccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEE----------ecCCCceeEEEECCCCC----------EE
Confidence 02799999999876 56789999999999999855555555 56889999999999877 79
Q ss_pred EEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccCCc
Q 019258 288 MFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
++++.||.|++|+.... ....+....++.++.++| ++.++++++.++
T Consensus 234 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 281 (369)
T 3zwl_B 234 ITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITP-LKEFIILGGGQE 281 (369)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEEEECCC
T ss_pred EEecCCceEEEEECCCCceeeeecCCCCceeEEecC-CCceEEEeecCC
Confidence 99999999999997543 334444567899999999 568999988877
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=220.83 Aligned_cols=254 Identities=13% Similarity=0.223 Sum_probs=188.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|...|.+++| ++++|++|+.|+. |++|++...... .....|.+.|.+++|+ ++.|++|+.||.|+
T Consensus 171 ~h~~~v~~l~~------~~~~l~sg~~dg~-----i~vwd~~~~~~~--~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~ 236 (435)
T 1p22_A 171 GHTGSVLCLQY------DERVIITGSSDST-----VRVWDVNTGEML--NTLIHHCEAVLHLRFN-NGMMVTCSKDRSIA 236 (435)
T ss_dssp CCSSCEEEEEC------CSSEEEEEETTSC-----EEEEESSSCCEE--EEECCCCSCEEEEECC-TTEEEEEETTSCEE
T ss_pred CCCCcEEEEEE------CCCEEEEEcCCCe-----EEEEECCCCcEE--EEEcCCCCcEEEEEEc-CCEEEEeeCCCcEE
Confidence 47788999988 3568999999975 779999653221 2223578899999997 67999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEe
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGG 175 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~ 175 (343)
+||+..............|...|.++.+.++.+++++.||.|++||+++++ ....+..|.. .+.++.+. +..+++++
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~-~~~l~~g~ 313 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKR-GIACLQYR-DRLVVSGS 313 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSS-CEEEEEEE-TTEEEEEE
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCC-cEEEEEeC-CCEEEEEe
Confidence 999986554433333447999999999999999999999999999999985 5555556655 79999985 57899999
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce--------eeee
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ--------SIVL 247 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~--------~~~~ 247 (343)
.|+.|++||+++ ++++..+..+. ..|.++++++ ..+++|+.||.|++||++.... ....
T Consensus 314 ~dg~i~iwd~~~---~~~~~~~~~h~-------~~v~~~~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 380 (435)
T 1p22_A 314 SDNTIRLWDIEC---GACLRVLEGHE-------ELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 380 (435)
T ss_dssp TTSCEEEEETTT---CCEEEEECCCS-------SCEEEEECCS---SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE
T ss_pred CCCeEEEEECCC---CCEEEEEeCCc-------CcEEEEEecC---CEEEEEeCCCcEEEEECCCCCCccccccchheee
Confidence 999999999998 78888887665 7899999943 4678999999999999976442 2333
Q ss_pred ecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-cccccccccceeeec
Q 019258 248 SGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAEPCAINSFDID 321 (343)
Q Consensus 248 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~~~~i~s~~~~ 321 (343)
. ..|.+.|.+++| ++. .|++++.||+|++|+...... .......+..++.+.
T Consensus 381 ~----------~~h~~~v~~l~~--~~~----------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 381 L----------VEHSGRVFRLQF--DEF----------QIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp E----------CCCSSCCCCEEE--CSS----------CEEECCSSSEEEEEC----------------------
T ss_pred c----------cCCCCCeEEEEe--CCC----------EEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 3 578999999999 334 799999999999999754432 222223455555543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=219.53 Aligned_cols=244 Identities=10% Similarity=0.120 Sum_probs=173.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCC------CCCceeeeeCCCCCC-C------CCCccCCCCCCeeEEEcc-CC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDA------DSPSLETHSISLPAS-L------TPHSQWTPPTRISSLSTS-HQ 82 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~------~~~~l~~w~~~~~~~-~------~~~~~~~~~~~v~~v~~~-~~ 82 (343)
+.+.|.++++.+ +.+++|..++.. ..-.+++|++..... . .......+...+.+++|+ ++
T Consensus 72 ~~~~v~s~~~~~------~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 72 NDDSPTAIDASK------GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp TSCCCCEEEEET------TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred CCCceEEEEeCC------CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 344555665544 456666543310 012377888743221 1 111222344568899999 88
Q ss_pred CeEEEEc--CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc-CCCc
Q 019258 83 SLVAAST--LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD-GNGL 157 (343)
Q Consensus 83 ~~l~~~s--~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~-~~~~ 157 (343)
.+|++++ .|++|+|||+...+.+... .|.+.|.+++|+ ++.+++++.++ +.+|+..++........ .|..
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEI----ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEe----CCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCC
Confidence 8876554 6899999999876655443 377889999998 78888888555 66666666544444333 3444
Q ss_pred cceEEEEeCC-CCEEEEEeCCC----cEEEEEccccCCCCC-e---eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGY----GLQWWDLRRAGSGGP-V---LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~----~i~iwd~~~~~~~~~-~---~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+.+++|+| +..+++++.|+ .+++||+.. ... . ..+..+. .+|++++|+|++. +||+|+
T Consensus 221 -~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~-------~~V~~~~~Spdg~-~lasgs 288 (365)
T 4h5i_A 221 -SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS---GNTSVLRSKQVTNRF-------KGITSMDVDMKGE-LAVLAS 288 (365)
T ss_dssp -EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET---TEEEEEEEEEEESSC-------SCEEEEEECTTSC-EEEEEE
T ss_pred -CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc---ceecceeeeeecCCC-------CCeEeEEECCCCC-ceEEEc
Confidence 799999999 77888888887 688899876 222 1 2233333 7799999999986 578999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|++|++||+++++....+. .+|...|++|+|+|++. +|+|||.|++|++|+...
T Consensus 289 ~D~~V~iwd~~~~~~~~~~~----------~gH~~~V~~v~fSpdg~----------~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIFK----------QAHSFAITEVTISPDST----------YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSCEEEEETTTTEEEEEET----------TSSSSCEEEEEECTTSC----------EEEEEETTSEEEEEECCT
T ss_pred CCCEEEEEECCCCcEEEEec----------CcccCCEEEEEECCCCC----------EEEEEeCCCeEEEEEcCC
Confidence 99999999999866555555 68999999999999988 899999999999999754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=220.86 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=185.1
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-------CCCccCCCCCCeeEEEc----
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-------TPHSQWTPPTRISSLST---- 79 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-------~~~~~~~~~~~v~~v~~---- 79 (343)
.-+.+|.......++|.........+++.| .|+. +.+|....+... ..+..+.+...+..+.|
T Consensus 8 ~~~~lpl~~~p~~~~w~~~~~~~~~l~a~g-~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (393)
T 4gq1_A 8 NQYQLPLNVRPYTTTWCSQSPSCSNLLAIG-HDTG-----ITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSC 81 (393)
T ss_dssp EEEECCTTCCEEEEEECTTSGGGTTEEEEE-ESSE-----EEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTC
T ss_pred CceEecCCCCCeEEEEeCCCCCCCCEEEEE-CCCC-----EEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCc
Confidence 445667777888999976432334555555 4543 567766322110 11111222333333332
Q ss_pred ----------------c-CCCeEEEEcCCCcEEEEEccCceee--eeeccCCccccCeEEEEec----------CCEEEE
Q 019258 80 ----------------S-HQSLVAASTLSGSLHVLSSAMQVLL--SVDENSGFHVGPISGVDLT----------GSECVS 130 (343)
Q Consensus 80 ----------------~-~~~~l~~~s~dg~v~v~~~~~~~~~--~~~~~~~~h~~~v~~~~~~----------~~~~~s 130 (343)
. +..+|++++.|++|+||+....+.. .......+|.+.|++++|+ ++.|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las 161 (393)
T 4gq1_A 82 SYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIAS 161 (393)
T ss_dssp EEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred cccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence 2 4457999999999999999855433 2334456899999999995 568999
Q ss_pred EeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC------
Q 019258 131 VGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG------ 202 (343)
Q Consensus 131 ~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------ 202 (343)
+|.|++|++||+.++......+..+ . .+.+++|+| ...|++++.|++|++||++. ++.......+..
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~~~~-~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGYPLS-S-PGISVQFRPSNPNQLIVGERNGNIRIFDWTL---NLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEEECS-S-CEEEEEEETTEEEEEEEEETTSEEEEEETTC---CC----------CSCCCS
T ss_pred EECCCeEEEEECCCCceeeeecCCC-C-CcEEEEECCCCCceEEecCCCCEEEEEECCC---CcccccccccCCcccceE
Confidence 9999999999998875555555444 4 699999999 35799999999999999987 333222111000
Q ss_pred ------------CCCCcccCeEEEEEc-CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 203 ------------SQGKASGMIHSVDIH-PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 203 ------------~~~~~~~~i~~v~~~-p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
....+...+.++.|. |++. .+++++.|+++++||++.......+. .|...+..+.
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~-----------~~~~~~~~~~ 304 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEIS-----------DSTMKLGPKN 304 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC------------------------------C
T ss_pred EecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEe-----------eecCccccEE
Confidence 001122668889987 5654 56899999999999998754332221 2333333333
Q ss_pred EeecCCCC-----------cCCCCCccceEEEecCCeEEEEecCCC--cccccccccccceeeecCCCCCeeEEccCCce
Q 019258 270 YDCHTKSS-----------NISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWES 336 (343)
Q Consensus 270 ~~p~~~~~-----------~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~ 336 (343)
+.|+.... ....+.. ++++++.||+|++|+.... .........+|.+++|+| +|++|+++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G- 381 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDY-FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS- 381 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTE-EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-
T ss_pred EccccccccccCcceeEEEccCCCCE-EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-
Confidence 32221100 0000111 5678899999999997533 334444567999999999 689999998765
Q ss_pred EEEE
Q 019258 337 IAIV 340 (343)
Q Consensus 337 i~~~ 340 (343)
+.+|
T Consensus 382 v~lv 385 (393)
T 4gq1_A 382 VLLT 385 (393)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=216.82 Aligned_cols=283 Identities=15% Similarity=0.099 Sum_probs=183.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc----CCCeEEEEcCCC
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS----HQSLVAASTLSG 92 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s~dg 92 (343)
|...|.+++|+| .++.+|++++.|+. |++|++.. ..+...+.+...+.++.|. ++.++++++.||
T Consensus 98 ~~~~v~~~~~~~---~~~~~l~s~~~d~~-----i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 98 HRYSVETVQWYP---HDTGMFTSSSFDKT-----LKVWDTNT---LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp CSSCEEEEEECT---TCTTCEEEEETTSE-----EEEEETTT---TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred CCCcEEEEEEcc---CCCcEEEEEeCCCe-----EEEeeCCC---CccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 888999999999 46779999999865 77999965 3334455678889999998 344899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEE---------------cC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVY---------------DG 154 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~---------------~~ 154 (343)
.|++|++...+.+... ..|.++|.++.|+ +. .+++++.||.|++||+++.......+ ..
T Consensus 167 ~v~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 167 KVQLCDLKSGSCSHIL---QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SEEEEESSSSCCCEEE---CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred eEEEEeCCCcceeeee---cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 9999999865544333 2588999999999 55 58999999999999998764333333 23
Q ss_pred CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 155 NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
+.. .|.+++|+| +..+++++.|+.|++||++. ++....+......... ......+...+ ...+++++.|+.|
T Consensus 244 ~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~i 316 (408)
T 4a11_B 244 HNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN---GENTLVNYGKVCNNSK-KGLKFTVSCGC--SSEFVFVPYGSTI 316 (408)
T ss_dssp CSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCBCCCCCCCCCCCCS-SCCCCEECCSS--SSCEEEEEETTEE
T ss_pred ccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCC---Cccceecccccccccc-ccceeEEecCC--CceEEEEecCCEE
Confidence 443 799999999 88999999999999999988 5544333222110100 01122222222 2345677889999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEP 312 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~ 312 (343)
++||+++.+.. ..+ .+|...|.+++|+|++. +|++++.||.|++|+..... .......
T Consensus 317 ~v~d~~~~~~~-~~~----------~~~~~~v~~~~~s~~~~----------~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 375 (408)
T 4a11_B 317 AVYTVYSGEQI-TML----------KGHYKTVDCCVFQSNFQ----------ELYSGSRDCNILAWVPSLYEPVPDDDET 375 (408)
T ss_dssp EEEETTTCCEE-EEE----------CCCSSCEEEEEEETTTT----------EEEEEETTSCEEEEEECC----------
T ss_pred EEEECcCCcce-eee----------ccCCCeEEEEEEcCCCC----------EEEEECCCCeEEEEeCCCCCccCCCCce
Confidence 99999885544 444 57899999999999987 79999999999999975432 1111111
Q ss_pred cccceeeecCCCCCeeEEccCCceEEEEeCC
Q 019258 313 CAINSFDIDPQNPSDVICSLEWESIAIVSRP 343 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~~ 343 (343)
..... +.+.........++++.+.+|..|
T Consensus 376 ~~~~~--~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 376 TTKSQ--LNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------------------
T ss_pred Eeccc--cccccceeecccCccCceeecCCc
Confidence 12222 222222445556677899999865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=215.01 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=183.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceee------e
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLL------S 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~------~ 106 (343)
++.++++|+.|+. |++|++..... +..+. .+.|.++.|+.. +++++.|++|++|+......+ .
T Consensus 47 d~~~l~sg~~Dg~-----v~iwd~~~~~~---~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGA-----LHFTQLKDSKT---ITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp EEEEEEEEEETTE-----EEEEEESSSSC---EEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCEEEEECCCCc-----EEEEECCCCcE---EEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 6789999999975 77999965322 22222 456777777733 999999999999987632110 0
Q ss_pred -eeccCCccccCeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcE
Q 019258 107 -VDENSGFHVGPISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGL 180 (343)
Q Consensus 107 -~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i 180 (343)
+......|.++|.++.++ ++.+++++.||+|++||+++++ .......+....+.+++|+| +..+++|+.|+.|
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 111222467899999996 6789999999999999999985 44444333333699999999 8889999999999
Q ss_pred EEEEccccCCCCCe-eEEec-ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc
Q 019258 181 QWWDLRRAGSGGPV-LQFKG-NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH 258 (343)
Q Consensus 181 ~iwd~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (343)
++||++. ++.+ ..+.. |. ++|.+++|+|++.. +++|+ |+.|++||+++......+.. .
T Consensus 195 ~iwd~~~---~~~~~~~~~~~h~-------~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~~~~~~~~~~--------~ 254 (343)
T 3lrv_A 195 DVYNLSS---PDQASSRFPVDEE-------AKIKEVKFADNGYW-MVVEC-DQTVVCFDLRKDVGTLAYPT--------Y 254 (343)
T ss_dssp EEEESSC---TTSCCEECCCCTT-------SCEEEEEECTTSSE-EEEEE-SSBEEEEETTSSTTCBSSCC--------C
T ss_pred EEEECCC---CCCCccEEeccCC-------CCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCCCCcceeecc--------c
Confidence 9999998 6665 56665 44 78999999999864 56777 45999999998654433220 0
Q ss_pred CCccccEE--EEEEeecCCCCcCCCCCccceEEEec-CCeEEEEecCCCcccccccccccceeeecC--CCCCeeEEccC
Q 019258 259 SLSESEVW--EVQYDCHTKSSNISSSRVLPAMFCSE-DGILAVVEQGEEPFELLAEPCAINSFDIDP--QNPSDVICSLE 333 (343)
Q Consensus 259 ~~h~~~v~--~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~--~~~~~l~~~~~ 333 (343)
..|...+. +++|+|++. +|++++. |+.|++|+.......... .++..+.+.+ .+...+++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~g~----------~l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDDSGK----------NMIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp BC-----CCEEEEECTTSS----------EEEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE
T ss_pred ccccccccceEEEECCCCC----------EEEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEec
Confidence 12334443 699999987 7888888 999999987433211111 3455555554 23467777777
Q ss_pred CceEEEE
Q 019258 334 WESIAIV 340 (343)
Q Consensus 334 ~~~i~~~ 340 (343)
++.+.++
T Consensus 323 d~~~~~~ 329 (343)
T 3lrv_A 323 DGGIAAI 329 (343)
T ss_dssp TTEEEEE
T ss_pred CCceEEE
Confidence 7777654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=224.56 Aligned_cols=263 Identities=11% Similarity=0.106 Sum_probs=190.1
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCC--------CCccC---C--CCCCeeEEE
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLT--------PHSQW---T--PPTRISSLS 78 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~--------~~~~~---~--~~~~v~~v~ 78 (343)
...+.|...|.+|+|+| ++++|++|+.|+. |++|++....... ++..+ + +...+.++.
T Consensus 105 ~~~~~h~~~v~~~~~~~----~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (437)
T 3gre_A 105 SLTYDCSSTVTQITMIP----NFDAFAVSSKDGQ-----IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175 (437)
T ss_dssp SEEEECSSCEEEEEECT----TSSEEEEEETTSE-----EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEE
T ss_pred eeeccCCCCEEEEEEeC----CCCEEEEEeCCCE-----EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEE
Confidence 33446889999999999 8899999999975 7799984110010 11111 1 566778887
Q ss_pred cc---CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 79 TS---HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 79 ~~---~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
+. ++.+|++++.||.|++||+...+.+...... .|.+.|++++|+ +..+++++.||+|++||+++++ +...+.
T Consensus 176 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 253 (437)
T 3gre_A 176 AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS-PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWS 253 (437)
T ss_dssp EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEB
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEe
Confidence 54 6789999999999999999876655444321 388999999998 8899999999999999999985 555443
Q ss_pred -CCCccceEEEEeCC-----CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC-------------------CCcc
Q 019258 154 -GNGLVGFNCVKWAS-----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ-------------------GKAS 208 (343)
Q Consensus 154 -~~~~~~v~~~~~~~-----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 208 (343)
.+.. .|.+++|+| +..+++++.|+.|++||++. ++.+..+..+.... ..+.
T Consensus 254 ~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (437)
T 3gre_A 254 FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK---GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL 329 (437)
T ss_dssp CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT---TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG
T ss_pred cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC---CcEEEEEEcCCCCCccceecccccccccceecccccC
Confidence 4544 799997765 34799999999999999988 66666666442100 0133
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC--------------------------CcccccCCcc
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT--------------------------GEAVTHSLSE 262 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~~~~~~~~h~ 262 (343)
..|.+++|+ ++ .++++|+.||.|++||+++++....+.+... ........|.
T Consensus 330 ~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 330 NALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 679999999 44 5778999999999999988665544432100 0000012389
Q ss_pred ccEEEEEEeec-CCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 263 SEVWEVQYDCH-TKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 263 ~~v~~v~~~p~-~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..|++++|+++ +.. .|++++.||.|++|+
T Consensus 408 ~~I~~i~~~~~~~~~---------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETP---------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSE---------EEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCce---------EEEEEcCCceEEEeC
Confidence 99999999998 233 799999999999995
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=213.55 Aligned_cols=240 Identities=17% Similarity=0.119 Sum_probs=186.2
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEEC-C
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSV-I 143 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~-~ 143 (343)
.|.+.|.+++|+ ++.+|++++.||.|++|++..............|...|.++.|+ +. .+++++.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 688999999999 88999999999999999998544111111112688999999998 78 8999999999999999 8
Q ss_pred CCceEEEEEcC--CCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCC------CCCeeEEecccCCCCCcccCeEEEE
Q 019258 144 GGGEFKRVYDG--NGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGS------GGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 144 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
++. . ..+.. |.. .|.+++|++.+.+++++.|+.|++||++.... .+++..+. +. ..+.+++
T Consensus 89 ~~~-~-~~~~~~~~~~-~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-------~~v~~~~ 157 (342)
T 1yfq_A 89 SPS-F-QALTNNEANL-GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK-------NKIFTMD 157 (342)
T ss_dssp SSS-E-EECBSCCCCS-CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC-------CCEEEEE
T ss_pred CCc-e-EeccccCCCC-ceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC-------CceEEEE
Confidence 774 4 34444 555 79999999988999999999999999975100 12222222 22 7799999
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccC-CceeeeeecCCCCcccccCCccccEEEEEEee-cCCCCcCCCCCccceEEEecC
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC-HTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~~~~~~~l~s~s~d 293 (343)
|+|++ +++++.||.|++||++. ...+..... ..|...|.+++|+| ++. .+++++.|
T Consensus 158 ~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~---------~~~~~~i~~i~~~~~~~~----------~l~~~~~d 215 (342)
T 1yfq_A 158 TNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEE---------SGLKYQIRDVALLPKEQE----------GYACSSID 215 (342)
T ss_dssp ECSSE---EEEEESTTEEEEEESSCCTTCCCEEEE---------CSCSSCEEEEEECSGGGC----------EEEEEETT
T ss_pred ecCCc---EEEEeCCCeEEEEECCccccccceeee---------cCCCCceeEEEECCCCCC----------EEEEEecC
Confidence 99875 67899999999999987 554333221 45788999999999 877 79999999
Q ss_pred CeEEEEecCCC-------c-cccccccc---------ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 294 GILAVVEQGEE-------P-FELLAEPC---------AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 294 g~i~~~~~~~~-------~-~~~~~~~~---------~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|.|++|+.... . ..+..+.. +|+++.++| ++.+|++|+.++.|++|+.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEET
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcC
Confidence 99999987543 1 12222222 899999999 5799999999999999974
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=216.78 Aligned_cols=250 Identities=11% Similarity=0.074 Sum_probs=188.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC----CCC-ccCCCCCCeeEEEcc-CC-CeEEEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL----TPH-SQWTPPTRISSLSTS-HQ-SLVAAS 88 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~----~~~-~~~~~~~~v~~v~~~-~~-~~l~~~ 88 (343)
.|...|.+++|+| .++++|++|+.|+. |++|++...... .++ ....|...|.+++|+ ++ .+|+++
T Consensus 79 ~h~~~V~~~~~~p---~~~~~l~s~s~dg~-----v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 79 GHTAPVLDIAWCP---HNDNVIASGSEDCT-----VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp CCSSCEEEEEECT---TCTTEEEEEETTSE-----EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred cCCCCEEEEEeCC---CCCCEEEEEeCCCe-----EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 4788999999999 46789999999965 779999654211 222 234588999999999 54 699999
Q ss_pred cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 89 TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 89 s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
+.||.|++||+...+.+..... ..|.+.|.+++|+ +..+++++.||.|++||+++++........|....+.++.|+
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEECT-TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred cCCCEEEEEECCCCCccEEEec-CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 9999999999987665544321 3589999999998 889999999999999999998544443256665358999999
Q ss_pred C-CCEEEEE---eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 167 S-PTEFVTG---GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 167 ~-~~~l~t~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+ +..++++ +.|+.|++||++. ...++....... . ..+.+++|+|++..++++|+.||.|++||++..+
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~--~~~~~~~~~~~~--~----~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKH--LEEPLSLQELDT--S----SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTB--CSSCSEEEECCC--C----SSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCCcEEEEeccCCCCceEEEEcCcc--ccCCceEEeccC--C----CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 9 5566666 5899999999998 223333333211 1 6699999999998877788889999999998865
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.....+. ...|...|.+++|+|++. .++ +.|+.+++|+..
T Consensus 302 ~~~~~l~--------~~~~~~~v~~~~~sp~~~----------~~~--s~~~~~~~~~l~ 341 (402)
T 2aq5_A 302 PFLHYLS--------MFSSKESQRGMGYMPKRG----------LEV--NKCEIARFYKLH 341 (402)
T ss_dssp TCEEEEE--------EECCSSCCSEEEECCGGG----------SCG--GGTEEEEEEEEE
T ss_pred cceEeec--------ccccCCcccceEEecccc----------cce--ecceeEEEEEcC
Confidence 3222220 022568999999999876 343 466788888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=232.51 Aligned_cols=240 Identities=14% Similarity=0.153 Sum_probs=197.3
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~ 144 (343)
..|.+.|.+++|+ ++.+|++++.||.|++|++..+..+.... .|.++|+++.|+ ++.+++++.||.|++||+.+
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe---cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3578899999999 88999999999999999998665554433 588999999999 88999999999999999999
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
++ ....+..|.. .|.+++|+| +..+++++.|+.|++||++. .......+..+. .+|.+++|+|.+...
T Consensus 87 ~~-~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~-------~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 87 GE-KVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFEGHE-------HFVMCVAFNPKDPST 155 (814)
T ss_dssp CC-EEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGG--TSEEEEEEECCS-------SCEEEEEEETTEEEE
T ss_pred Cc-EEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCC--CceEEEEEcCCC-------CcEEEEEEEcCCCCE
Confidence 85 4444555655 799999999 77899999999999999988 224444566554 789999999944567
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee--cCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC--HTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+++|+.||.|++||++.......+. ..|...+..++|+| ++. .+++++.||.|++|+.
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~----------~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNFTLT----------TGQERGVNYVDYYPLPDKP----------YMITASDDLTIKIWDY 215 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEE----------CCCTTCCCEEEECCSTTCC----------EEEEECTTSEEEEEET
T ss_pred EEEEeCCCeEEEEECCCCcceeEEe----------cCCCCCEEEEEEEECCCCC----------EEEEEeCCCEEEEEEC
Confidence 8899999999999998766555554 44568899999999 666 7999999999999997
Q ss_pred CCC--cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 302 GEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 302 ~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
... ...+..+..+|.++.++| ++.++++++.++.|++|+-
T Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 216 QTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence 533 223333457899999999 6689999999999999973
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=202.02 Aligned_cols=241 Identities=15% Similarity=0.208 Sum_probs=183.0
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|...|.+|+|+| ++++|++|+.|+. +++|++...... .....|...+.++.+. +..|++++.++.++
T Consensus 65 ~~~~~V~~v~~~~----~~~~l~sgs~Dg~-----v~iw~~~~~~~~--~~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 65 QPGEYISSVAWIK----EGNYLAVGTSSAE-----VQLWDVQQQKRL--RNMTSHSARVGSLSWN-SYILSSGSRSGHIH 132 (318)
T ss_dssp STTCCEEEEEECT----TSSEEEEEETTSE-----EEEEETTTTEEE--EEEECCSSCEEEEEEE-TTEEEEEETTSEEE
T ss_pred CCCCeEEEEEECC----CCCEEEEEECCCc-----EEEeecCCceeE--EEecCccceEEEeecC-CCEEEEEecCCceE
Confidence 5777899999999 8999999999975 779999653222 2234567777776665 78999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce---EEEEEcCCCccceEEEEeCC--C
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVKWAS--P 168 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~--~ 168 (343)
+|+......... ....|...+..+.+. +..+++++.||+|++||+++++. .......+.. .+.++.+.+ .
T Consensus 133 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 209 (318)
T 4ggc_A 133 HHDVRVAEHHVA--TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQS 209 (318)
T ss_dssp EEETTSSSCEEE--EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS-CEEEEEECTTST
T ss_pred eeecCCCceeEE--EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC-ceEEEEecCCCC
Confidence 999874332211 112588899999998 88999999999999999987431 1222233433 699999988 3
Q ss_pred CEE--EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE-EecCCcEEEEEccCCceee
Q 019258 169 TEF--VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA-GGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 169 ~~l--~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s-g~~dg~v~iwd~~~~~~~~ 245 (343)
..+ ++++.+++|++||.+. ........ +. ..+..+.++|.+..++++ |+.||.|++||+++++. .
T Consensus 210 ~~~~~~~~~~~~~i~lwd~~~---~~~~~~~~-~~-------~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~-~ 277 (318)
T 4ggc_A 210 NVLATGGGTSDRHIRIWNVCS---GACLSAVD-AH-------SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-V 277 (318)
T ss_dssp TEEEEEECTTTCEEEEEETTT---CCEEEEEE-CS-------SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-E
T ss_pred cEEEEEecCCCCEEEEEeccc---cccccccc-ce-------eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-E
Confidence 433 3556689999999987 44443333 22 669999999998776544 45899999999998654 4
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..+ .+|.+.|++|+|+|++. +|+|||.||+|++|+..+
T Consensus 278 ~~l----------~gH~~~V~~l~~spdg~----------~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AEL----------KGHTSRVLSLTMSPDGA----------TVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEE----------CCCSSCEEEEEECTTSS----------CEEEEETTTEEEEECCSC
T ss_pred EEE----------cCCCCCEEEEEEcCCCC----------EEEEEecCCeEEEEECCC
Confidence 444 57999999999999988 799999999999998743
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=218.68 Aligned_cols=264 Identities=9% Similarity=0.105 Sum_probs=194.5
Q ss_pred cccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 12 VHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 12 ~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
+.|=.....|.+|+|+| ++.++||+|.|++ ++ +.. ...++ -.|++.|.+++|+ ++ .
T Consensus 9 ~~~~~~~~~v~sv~~Sp----DG~~iASas~D~T-----V~--d~~---~~~~l--~gh~~~v~~V~FsPdg-------~ 65 (588)
T 2j04_A 9 VDRKEFEDWKNNLTWAR----DGTLYLTTFPDIS-----IG--QPK---YAKDI--NCNSKNLFHVKEFPLE-------F 65 (588)
T ss_dssp ECSCCCSSSSCCEEECT----TSCEEEECSSSEE-----EE--EEC---CCSCC--SSBGGGTEEEEEECCC-------C
T ss_pred ccHhHhhccEEEEEECC----CCCEEEEEcCCce-----ee--ccc---cccee--cCCCccEEEEEECCCC-------C
Confidence 33444557899999999 9999999999965 44 421 12223 3788999999999 43 4
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc----cceEEEE
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL----VGFNCVK 164 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~----~~v~~~~ 164 (343)
++.+.+|+... ...... .|...|.+++|+ |+.+++++.||.|++||..+ ....+. |+. ..+.+++
T Consensus 66 ~~~~~~~~~~~---~~~~~~--~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 66 ENKLDFELAQQ---NGLLNS--QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CCTTTTSCCCS---SCSSTT--SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEE
T ss_pred cceEEEEeCCC---ceEeec--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEE
Confidence 55555554332 112221 467889999999 99999999999999999543 444444 442 1499999
Q ss_pred eCC-CCEEEEEeCCCcEEEEEccccCCCCC-------eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE
Q 019258 165 WAS-PTEFVTGGFGYGLQWWDLRRAGSGGP-------VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW 236 (343)
Q Consensus 165 ~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw 236 (343)
|+| ++.|++|+.||+|++||+.. +.. +.++..+.. .|..+|.+++|+|++ +++++.|++|++|
T Consensus 137 fSPDG~~LAsgs~DGtVkIWd~~~---~~l~~~~~i~l~ti~~~~~---gh~~~V~sVawSPdg---Laass~D~tVrlW 207 (588)
T 2j04_A 137 WNPIESSIVVGNEDGELQFFSIRK---NSENTPEFYFESSIRLSDA---GSKDWVTHIVWYEDV---LVAALSNNSVFSM 207 (588)
T ss_dssp ECSSSSCEEEEETTSEEEEEECCC---CTTTCCCCEEEEEEECSCT---TCCCCEEEEEEETTE---EEEEETTCCEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEEECCC---Cccccccceeeeeeecccc---cccccEEEEEEcCCc---EEEEeCCCeEEEE
Confidence 999 99999999999999999987 332 345543321 022789999999987 5788999999999
Q ss_pred EccCCcee---eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-ccc-cc
Q 019258 237 DLRWQQQS---IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELL-AE 311 (343)
Q Consensus 237 d~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~-~~ 311 (343)
|+...... ..+. .+|...|.+++|+ +. .+++++ +|+|++|+...... .+. .+
T Consensus 208 d~~~~~~~~~~~tL~----------~~h~~~V~svaFs--g~----------~LASa~-~~tIkLWd~~~~~~~~~~~gh 264 (588)
T 2j04_A 208 TVSASSHQPVSRMIQ----------NASRRKITDLKIV--DY----------KVVLTC-PGYVHKIDLKNYSISSLKTGS 264 (588)
T ss_dssp CCCSSSSCCCEEEEE----------CCCSSCCCCEEEE--TT----------EEEEEC-SSEEEEEETTTTEEEEEECSC
T ss_pred ECCCCccccceeeec----------ccccCcEEEEEEE--CC----------EEEEEe-CCeEEEEECCCCeEEEEEcCC
Confidence 99775421 2232 3688899999999 44 688887 69999999765443 333 45
Q ss_pred ccccceeee--cCCCCCeeEEccCCceEEEEe
Q 019258 312 PCAINSFDI--DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 312 ~~~i~s~~~--~~~~~~~l~~~~~~~~i~~~~ 341 (343)
...++++.+ +| ++..++.+++++. ++|.
T Consensus 265 ~~~V~~va~~~s~-d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 265 LENFHIIPLNHEK-ESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp CSCCCEEEETTCS-SCEEEEECSSCEE-EEEE
T ss_pred CceEEEEEeeeCC-CCCEEEEEcCCCC-EEEe
Confidence 678999999 87 6688999998998 7775
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=214.94 Aligned_cols=236 Identities=12% Similarity=0.084 Sum_probs=170.7
Q ss_pred CCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEcc--CceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 70 PPTRISSLSTS-HQSLV-AASTLSGSLHVLSSA--MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~--~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
|.+.|.+++|+ ++.+| ++++.||.|++|++. ..+.+..... ..|...|+++.|+ +..+++++.||.|.+|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 44479999999 77775 889999999999998 5555544332 1467889999998 8899999999999999998
Q ss_pred CCceE---EEEEcCCCccceEEEEeCCC---C-EEEEEeCCCcEEEEEccccCCCCCeeEE-ecccCCCCCcccCeEEEE
Q 019258 144 GGGEF---KRVYDGNGLVGFNCVKWASP---T-EFVTGGFGYGLQWWDLRRAGSGGPVLQF-KGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 144 ~~~~~---~~~~~~~~~~~v~~~~~~~~---~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~ 215 (343)
++... ...+..|.. .|.+++|+|. . .|++++.|+.|++||++. +..+..+ .+|. ..|.+++
T Consensus 180 ~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~h~-------~~v~~~~ 248 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVS-MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ---CFIVDKWLFGHK-------HFVSSIC 248 (450)
T ss_dssp SCCCSSCCCCCSEECSS-CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC---TTCEEEECCCCS-------SCEEEEE
T ss_pred CcccccccceeeecccC-ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC---CceeeeeecCCC-------CceEEEE
Confidence 75321 113344554 7999999985 4 799999999999999988 6766663 3444 7899999
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc--------------ccCCccccEEEEEEeecCCCCcCCC
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV--------------THSLSESEVWEVQYDCHTKSSNISS 281 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~h~~~v~~v~~~p~~~~~~~~~ 281 (343)
|+ ++. ++++|+.|++|++||+++++....+......... ....+...|..++|+|++.
T Consensus 249 ~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~------ 320 (450)
T 2vdu_B 249 CG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP------ 320 (450)
T ss_dssp EC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS------
T ss_pred EC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC------
Confidence 99 765 5689999999999999986554433210000000 0002345799999999887
Q ss_pred CCccceEEEe-cCCeEEEEec--CCC----cccccccccccceeeecCCCCCeeEEc
Q 019258 282 SRVLPAMFCS-EDGILAVVEQ--GEE----PFELLAEPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 282 ~~~~~l~s~s-~dg~i~~~~~--~~~----~~~~~~~~~~i~s~~~~~~~~~~l~~~ 331 (343)
++++++ .|+.|++|+. ... ....+..+..+.+++++| + ..+++.
T Consensus 321 ----~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~-~~~v~~ 371 (450)
T 2vdu_B 321 ----FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN-D-EFQVTL 371 (450)
T ss_dssp ----EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET-T-EEEEEE
T ss_pred ----EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC-C-cEEEEE
Confidence 677777 8999999998 221 112222347899999999 3 344443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=206.27 Aligned_cols=283 Identities=11% Similarity=0.057 Sum_probs=210.7
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC---ccCCCCCCeeEEEcc-CCCeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH---SQWTPPTRISSLSTS-HQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~---~~~~~~~~v~~v~~~-~~~~l~ 86 (343)
.+..++....+.+++|+| ++.++++++.|+. |++|++......... ....|.+.|.+++|+ ++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~s~----~~~~~~~~~~~~~-----i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 185 (433)
T 3bws_A 115 FISRFKTGFQPKSVRFID----NTRLAIPLLEDEG-----MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWV 185 (433)
T ss_dssp EEEEEECSSCBCCCEESS----SSEEEEEBTTSSS-----EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEE
T ss_pred EEEEEcCCCCceEEEEeC----CCeEEEEeCCCCe-----EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEE
Confidence 344455566778899999 6788888877754 779999653222111 123577889999998 778899
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
+++.|+.|++|++...+.+.... .|...+.++.|+ ++.+ ++++.|+.|++||+++++ ....+..+. .+.++
T Consensus 186 s~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~--~~~~~ 259 (433)
T 3bws_A 186 SQMQANAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDKIG--LPRGL 259 (433)
T ss_dssp EEGGGTEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCCCS--EEEEE
T ss_pred EECCCCEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecCCC--CceEE
Confidence 99999999999998655443332 477889999998 6666 455589999999999884 555555444 59999
Q ss_pred EeCC-CCEEEEEe--------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEE
Q 019258 164 KWAS-PTEFVTGG--------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 164 ~~~~-~~~l~t~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~ 234 (343)
+|+| +..+++++ .|+.|++||++. ++.+..+. +. ..+.+++|+|++..++++++.|+.|+
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---~~~~~~~~-~~-------~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDK---EKLIDTIG-PP-------GNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTT---TEEEEEEE-EE-------ECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCC---CcEEeecc-CC-------CCcceEEECCCCCEEEEEecCCCEEE
Confidence 9999 66888887 488999999987 55444432 22 56889999999988888999999999
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec---------------CCeEEEE
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE---------------DGILAVV 299 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~---------------dg~i~~~ 299 (343)
+||+++.+....+. +...+.+++|+|++. .+++++. ||.|++|
T Consensus 329 v~d~~~~~~~~~~~------------~~~~~~~~~~s~dg~----------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 329 VYDLKEKKVQKSIP------------VFDKPNTIALSPDGK----------YLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp EEETTTTEEEEEEE------------CSSSEEEEEECTTSS----------EEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred EEECCCCcEEEEec------------CCCCCCeEEEcCCCC----------EEEEEecCCCccccccccccccceEEEEE
Confidence 99998754433332 567799999999987 4666554 6799999
Q ss_pred ecCCC-cccccccccccceeeecCCCCCeeEEcc-CCceEEEEeC
Q 019258 300 EQGEE-PFELLAEPCAINSFDIDPQNPSDVICSL-EWESIAIVSR 342 (343)
Q Consensus 300 ~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~-~~~~i~~~~~ 342 (343)
+.... ..........+.+++++| ++++|++++ .++.|++|+.
T Consensus 387 d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 387 DTTTDTVKEFWEAGNQPTGLDVSP-DNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp ETTTTEEEEEEECSSSEEEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCcEEEEecCCCCCceEEEcC-CCCEEEEEECCCCeEEEEEe
Confidence 97533 333334456789999999 568887665 5899999973
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=204.97 Aligned_cols=222 Identities=10% Similarity=0.032 Sum_probs=163.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECC---------CCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVI---------GGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~---------~~~~~~~~ 151 (343)
++.+|++|+.||.|++||+...+.+.... ...|.++.++.. +++++.|++|++|+.. ++......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 67899999999999999998665443332 345666666644 9999999999999765 33223333
Q ss_pred EcCCCccceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 152 YDGNGLVGFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
...+.. .|.+++|+| +..+++++.|++|++||++. ++.+.....+.. ..+.+++|+|++. ++++|+
T Consensus 121 ~~~~~~-~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~------~~i~~~~~~pdg~-~lasg~ 189 (343)
T 3lrv_A 121 EVDSAN-EIIYMYGHNEVNTEYFIWADNRGTIGFQSYED---DSQYIVHSAKSD------VEYSSGVLHKDSL-LLALYS 189 (343)
T ss_dssp ECCCSS-CEEEEECCC---CCEEEEEETTCCEEEEESSS---SCEEEEECCCSS------CCCCEEEECTTSC-EEEEEC
T ss_pred ecCCCC-CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC---CcEEEEEecCCC------CceEEEEECCCCC-EEEEEc
Confidence 334444 799999998 56888999999999999988 565444433321 5699999999875 678999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCC-ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSL-SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF- 306 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~- 306 (343)
.||.|++||++++......+ .. |.++|.+++|+|++. +|++++ |+.|++||......
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~----------~~~h~~~v~~l~fs~~g~----------~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRF----------PVDEEAKIKEVKFADNGY----------WMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp TTSCEEEEESSCTTSCCEEC----------CCCTTSCEEEEEECTTSS----------EEEEEE-SSBEEEEETTSSTTC
T ss_pred CCCEEEEEECCCCCCCccEE----------eccCCCCEEEEEEeCCCC----------EEEEEe-CCeEEEEEcCCCCcc
Confidence 99999999999876552333 34 899999999999987 788888 55999999754321
Q ss_pred -cccc---cccccc--eeeecCCCCCeeEEccC-CceEEEEe
Q 019258 307 -ELLA---EPCAIN--SFDIDPQNPSDVICSLE-WESIAIVS 341 (343)
Q Consensus 307 -~~~~---~~~~i~--s~~~~~~~~~~l~~~~~-~~~i~~~~ 341 (343)
.+.. +..++. +++++| ++.+|++++. ++.|++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp BSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred eeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEE
Confidence 1211 124454 599999 6789998776 88899984
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=198.11 Aligned_cols=259 Identities=7% Similarity=0.038 Sum_probs=195.1
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeeccCC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDENSG 112 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~ 112 (343)
.++++++.|+. |++|++... +++..+.+...+.+++|+ ++..| ++++.|+.|++||+...+.+....
T Consensus 3 ~l~vs~~~d~~-----v~v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--- 71 (391)
T 1l0q_A 3 FAYIANSESDN-----ISVIDVTSN---KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--- 71 (391)
T ss_dssp EEEEEETTTTE-----EEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---
T ss_pred EEEEEcCCCCE-----EEEEECCCC---eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---
Confidence 46788888864 779999653 334455566679999999 77665 677789999999998666554443
Q ss_pred ccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccc
Q 019258 113 FHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRR 187 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~ 187 (343)
+...+.++.|+ ++.++ +++.|+.|++||+.+++ ....+..+. .+.+++|++ ++.+ ++++.++.|++||++.
T Consensus 72 -~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 72 -AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp -CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 23389999998 66664 55678999999999985 555555444 589999999 5555 6888899999999988
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
++.+..+..+ ..+.+++|+|++..++++++.|+.|++||+++.+....+. +...+..
T Consensus 148 ---~~~~~~~~~~--------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------------~~~~~~~ 204 (391)
T 1l0q_A 148 ---KAVINTVSVG--------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK------------VEAAPSG 204 (391)
T ss_dssp ---TEEEEEEECC--------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------CSSEEEE
T ss_pred ---CcEEEEEecC--------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe------------cCCCccc
Confidence 6666555543 4479999999998887888999999999998864433332 4567899
Q ss_pred EEEeecCCCCcCCCCCccceEEEe---cCCeEEEEecCCC-cccccccccccceeeecCCCCCee-EEccCCceEEEEeC
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCS---EDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDV-ICSLEWESIAIVSR 342 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s---~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l-~~~~~~~~i~~~~~ 342 (343)
++|+|++. .+++++ .++.|++|+.... ....+..+..+.++.++| ++++| ++++.++.|++|+-
T Consensus 205 ~~~~~~g~----------~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 205 IAVNPEGT----------KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP-DGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEECTTSS----------EEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred eEECCCCC----------EEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEcc-CCCEEEEEcCCCCEEEEEEC
Confidence 99999987 577776 6899999997533 333333445678999999 45666 67788899999973
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-25 Score=195.57 Aligned_cols=240 Identities=14% Similarity=0.171 Sum_probs=183.4
Q ss_pred CCCCCCeeEEEcc-C---CCeEEEEcCCCcEEEEEccC-ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEE
Q 019258 68 WTPPTRISSLSTS-H---QSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLV 140 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~---~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~w 140 (343)
..|.+.|++++|+ + +.+|++|+.||.|++|++.. ...+.. ....|.++|+++.|+ ++.|++++.||.|++|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 4688999999999 4 48999999999999999985 333211 123589999999998 8899999999999999
Q ss_pred ECCCCceEEEEEcCCCccceEEEEe--CC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKW--AS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
|+++++ ...... |.. .|.+++| ++ ...|++++.|+.|++||++. ++++..+..+ ..+.++.+.
T Consensus 114 d~~~~~-~~~~~~-~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~--------~~~~~~~~~ 179 (368)
T 3mmy_A 114 DLSSNQ-AIQIAQ-HDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---SNPMMVLQLP--------ERCYCADVI 179 (368)
T ss_dssp ETTTTE-EEEEEE-CSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSC---SSCSEEEECS--------SCEEEEEEE
T ss_pred EcCCCC-ceeecc-ccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCC---CcEEEEEecC--------CCceEEEec
Confidence 999984 455443 444 7999999 77 67799999999999999998 7777777644 447777777
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
+. .+++++.++.+.+||++.......... ..+...+..+.+.+....... .+++++.||.|+
T Consensus 180 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~dg~i~ 241 (368)
T 3mmy_A 180 YP---MAVVATAERGLIVYQLENQPSEFRRIE---------SPLKHQHRCVAIFKDKQNKPT------GFALGSIEGRVA 241 (368)
T ss_dssp TT---EEEEEEGGGCEEEEECSSSCEEEEECC---------CSCSSCEEEEEEEECTTSCEE------EEEEEETTSEEE
T ss_pred CC---eeEEEeCCCcEEEEEeccccchhhhcc---------ccccCCCceEEEcccCCCCCC------eEEEecCCCcEE
Confidence 53 456788999999999988665555442 334556667777665441000 299999999999
Q ss_pred EEecCCCcc-----ccccccc------------ccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 298 VVEQGEEPF-----ELLAEPC------------AINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 298 ~~~~~~~~~-----~~~~~~~------------~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|+...... .+..+.. +|.+++++| ++.+|++|+.++.|++|+-
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEET
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEEC
Confidence 999864321 2112222 699999999 6799999999999999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=209.57 Aligned_cols=252 Identities=8% Similarity=0.013 Sum_probs=166.6
Q ss_pred ccCCcccceeeEEecCCC----------------CCCCCeEEEEeecCCCCCCceeeeeCCCCCCC--CCC-ccCCCCCC
Q 019258 13 HRFPQSKYIDAVRWLPPL----------------SPLSKLAVLAIYDTDADSPSLETHSISLPASL--TPH-SQWTPPTR 73 (343)
Q Consensus 13 ~~~~~~~~i~~v~w~p~~----------------~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~--~~~-~~~~~~~~ 73 (343)
..+.+...+..+.|.+.. .+++.++++|+.|++ +++|++...... .++ ....|.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~-----v~lw~~~~~~~~~~~~~~~~~gH~~~ 138 (393)
T 4gq1_A 64 FTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNT-----VRLIITKNETIITQHVLGGKSGHHNF 138 (393)
T ss_dssp EEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTSC-----EEEEEEETTEEEEEEEECTTTSCSSC
T ss_pred EEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCCc-----EEEEECCCCccceeeeecccCCCCCc
Confidence 334455667777777621 124568999999975 779998553211 112 23468999
Q ss_pred eeEEEcc---------CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEE
Q 019258 74 ISSLSTS---------HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVS 141 (343)
Q Consensus 74 v~~v~~~---------~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd 141 (343)
|++++|+ ++.+|++++.|++|+|||+.......... .|..+|.+++|+ + ..+++++.||+|++||
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 9999996 45789999999999999998554443322 488899999998 3 4799999999999999
Q ss_pred CCCCceEEEEE------------------------cCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCee
Q 019258 142 VIGGGEFKRVY------------------------DGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 142 ~~~~~~~~~~~------------------------~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 195 (343)
+++++...... ..+.. .+.++.|.+ +..+++++.|+++++||++. ++...
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~---~~~~~ 291 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS-SLANVRWIGSDGSGILAMCKSGAWLRWNLFA---NNDYN 291 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSS-SCSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccc-cceeeeeecCCCCEEEEEeCCCCEEEEECcc---CCCCc
Confidence 98764222111 12223 578888874 78899999999999999987 44333
Q ss_pred EEecccCCCC-----------CcccCeEEEEEcC-CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccc
Q 019258 196 QFKGNFGSQG-----------KASGMIHSVDIHP-SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 196 ~~~~~~~~~~-----------~~~~~i~~v~~~p-~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~ 263 (343)
.+..+..... ..........++| .+..++++|+.||+|++||+.++....... .|..
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-----------~~~~ 360 (393)
T 4gq1_A 292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-----------QLGM 360 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-----------ECSS
T ss_pred eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-----------CCCC
Confidence 3322210000 0001122233444 344567788899999999998866554443 4778
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
+|.+|+|+|++. +|+++++||.+.
T Consensus 361 ~V~svafspdG~----------~LA~as~~Gv~l 384 (393)
T 4gq1_A 361 PIVDFCWHQDGS----------HLAIATEGSVLL 384 (393)
T ss_dssp CEEEEEECTTSS----------EEEEEESSEEEE
T ss_pred cEEEEEEcCCCC----------EEEEEeCCCeEE
Confidence 999999999988 789998877543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-25 Score=202.15 Aligned_cols=233 Identities=11% Similarity=0.052 Sum_probs=172.5
Q ss_pred CcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCC--CCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSIS--LPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS 91 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~--~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d 91 (343)
++...|.+++|+| ++++| ++|+.|+. +++|++. .......+....+...|.+++|+ ++.+|++++.+
T Consensus 100 ~~~~~v~~~~~s~----d~~~l~~~~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 100 PIYSYIRNLRLTS----DESRLIACADSDKS-----LLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp CCCCCEEEEEECT----TSSEEEEEEGGGTE-----EEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCceEEEEEcC----CCCEEEEEECCCCe-----EEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence 3555799999999 78885 89998865 7799996 32222222223677899999999 88999999999
Q ss_pred CcEEEEEccCceeee-eeccCCccccCeEEEEec-C---C-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 92 GSLHVLSSAMQVLLS-VDENSGFHVGPISGVDLT-G---S-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 92 g~v~v~~~~~~~~~~-~~~~~~~h~~~v~~~~~~-~---~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
|.|++|++....... .......|.+.|+++.|+ . . .+++++.|++|++||+.++.........|.. .|.+++|
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~ 249 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH-FVSSICC 249 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS-CEEEEEE
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC-ceEEEEE
Confidence 999999997544332 222334688999999998 4 4 8999999999999999987645454555655 8999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC------------------CCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 166 ASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG------------------SQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 166 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------------~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
+.+..|++++.|++|++||++. ++.+..+..+.. ........+.+++|+|++..++ ++
T Consensus 250 sd~~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~ 325 (450)
T 2vdu_B 250 GKDYLLLSAGGDDKIFAWDWKT---GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA-FF 325 (450)
T ss_dssp CSTTEEEEEESSSEEEEEETTT---CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE-EE
T ss_pred CCCCEEEEEeCCCeEEEEECCC---CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE-EE
Confidence 8667899999999999999998 676666653210 0001115699999999987654 55
Q ss_pred e-cCCcEEEEEc--cCCc--eeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 228 G-SSGTVFAWDL--RWQQ--QSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 228 ~-~dg~v~iwd~--~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
+ .|+.|++||+ .... .....+ ..| ..|.+++|+|+
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~----------~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQII----------TFP-YNVISLSAHND 365 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEE----------ECS-SCEEEEEEETT
T ss_pred ECCCCeEEEEEeccCCCCceeeccEe----------ccC-CceEEEEecCC
Confidence 5 8999999999 4321 223333 345 78999999994
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=207.30 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=183.5
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|..|+++| ++ .|+. +++|+... . ....+.+...|.+++|+ ++..|++++.||.|
T Consensus 50 gh~~~v~~V~FsP----dg-------~~~~-----~~~~~~~~---~-~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V 109 (588)
T 2j04_A 50 CNSKNLFHVKEFP----LE-------FENK-----LDFELAQQ---N-GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNV 109 (588)
T ss_dssp SBGGGTEEEEEEC----CC-------CCCT-----TTTSCCCS---S-CSSTTSCSCCEEEEEECSSSSCEEEEETTSCE
T ss_pred CCCccEEEEEECC----CC-------Ccce-----EEEEeCCC---c-eEeecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 6888999999999 55 3322 22444321 1 23344667889999999 99999999999999
Q ss_pred EEEEccCceeeeeeccCCcccc-----CeEEEEec--CCEEEEEeCCCcEEEEECCCCce------EEEEE----cCCCc
Q 019258 95 HVLSSAMQVLLSVDENSGFHVG-----PISGVDLT--GSECVSVGEDGRVNLVSVIGGGE------FKRVY----DGNGL 157 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~------~~~~~----~~~~~ 157 (343)
++|+... .+.. .. |.. .|.+++|+ |+.+++|+.||+|++||+.++.. ....+ .+|..
T Consensus 110 ~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 110 SVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp EEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred EEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence 9999653 2222 22 443 59999999 99999999999999999988642 23443 44444
Q ss_pred cceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCC---CeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 158 VGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGG---PVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 158 ~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.|.+++|+|.. +++++.|++|++||+.. .. ...++. +|. ..|.+++|+ + ..+|+++ +++|
T Consensus 184 -~V~sVawSPdg-Laass~D~tVrlWd~~~---~~~~~~~~tL~~~h~-------~~V~svaFs--g-~~LASa~-~~tI 247 (588)
T 2j04_A 184 -WVTHIVWYEDV-LVAALSNNSVFSMTVSA---SSHQPVSRMIQNASR-------RKITDLKIV--D-YKVVLTC-PGYV 247 (588)
T ss_dssp -CEEEEEEETTE-EEEEETTCCEEEECCCS---SSSCCCEEEEECCCS-------SCCCCEEEE--T-TEEEEEC-SSEE
T ss_pred -cEEEEEEcCCc-EEEEeCCCeEEEEECCC---Cccccceeeeccccc-------CcEEEEEEE--C-CEEEEEe-CCeE
Confidence 89999999965 99999999999999977 33 223453 333 679999999 4 3567776 6999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEE--eecCCCCcCCCCCccceEEEecCCeEEEEecCC------Cc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQY--DCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE------EP 305 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~------~~ 305 (343)
++||+..... ..+. .+|.+.|+.|.| +|++. .++++++||+ ++|..+. ..
T Consensus 248 kLWd~~~~~~-~~~~----------~gh~~~V~~va~~~s~d~~----------~La~a~edG~-klw~~d~~~~spd~~ 305 (588)
T 2j04_A 248 HKIDLKNYSI-SSLK----------TGSLENFHIIPLNHEKEST----------ILLMSNKTSY-KVLLEDELHVTADNI 305 (588)
T ss_dssp EEEETTTTEE-EEEE----------CSCCSCCCEEEETTCSSCE----------EEEECSSCEE-EEEESSSEEEECCCS
T ss_pred EEEECCCCeE-EEEE----------cCCCceEEEEEeeeCCCCC----------EEEEEcCCCC-EEEeeccEEECCCce
Confidence 9999987433 2333 369999999999 98876 6999999999 7776421 00
Q ss_pred ------------------ccccccccccceeeecCCCCCeeEEccC
Q 019258 306 ------------------FELLAEPCAINSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 306 ------------------~~~~~~~~~i~s~~~~~~~~~~l~~~~~ 333 (343)
...+.....|++++++| +|+.++.+++
T Consensus 306 l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 306 IAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp SHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence 00111123589999999 6788888763
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=193.04 Aligned_cols=228 Identities=10% Similarity=0.066 Sum_probs=164.5
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~ 143 (343)
-.|.+.|++++|+ ++.+|++|+.+| +++|++...+..... +...+..+.+. ++.+ ++++.|++|++||+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 4578999999999 888888887775 789998754433222 11235555554 5555 677888999999999
Q ss_pred CCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+++ ....+..+. .|.++++++.. ++.+ .|+.|++||++. . +.+..+.. +...++++| ..
T Consensus 90 ~~~-~~~~~~~~~--~v~~v~~~~~~-~~~~-~~~~i~i~d~~~---~~~~~~~~~~----------~~~~~~~s~--~~ 149 (355)
T 3vu4_A 90 KKQ-DVSRIKVDA--PVKDLFLSREF-IVVS-YGDVISVFKFGN---PWKRITDDIR----------FGGVCEFSN--GL 149 (355)
T ss_dssp TTE-EEEEEECSS--CEEEEEECSSE-EEEE-ETTEEEEEESST---TCCBSSCCEE----------EEEEEEEET--TE
T ss_pred CCc-EEEEEECCC--ceEEEEEcCCE-EEEE-EcCEEEEEECCC---CceeeEEecc----------CCceEEEEc--cE
Confidence 985 444444443 69999998754 3333 488999999988 4 55555542 233455666 34
Q ss_pred EEEE-EecCCcEEEEEccCCce--------------e-eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 223 TCLA-GGSSGTVFAWDLRWQQQ--------------S-IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 223 ~~~s-g~~dg~v~iwd~~~~~~--------------~-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
++++ |+.||.|++||++.... | ...+ .+|.+.|.+++|+|++. +
T Consensus 150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~h~~~v~~~~~s~~g~----------~ 209 (355)
T 3vu4_A 150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI----------KAHTNPIKMVRLNRKSD----------M 209 (355)
T ss_dssp EEEEESSCTTCEEEEECCC------------------CCEEE----------CCCSSCEEEEEECTTSS----------E
T ss_pred EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE----------EccCCceEEEEECCCCC----------E
Confidence 4444 78999999999987541 2 3333 67999999999999887 8
Q ss_pred eEEEecCCe-EEEEecCCC--ccccc-c-cccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 287 AMFCSEDGI-LAVVEQGEE--PFELL-A-EPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 287 l~s~s~dg~-i~~~~~~~~--~~~~~-~-~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|++|+.||+ |++|+.... ..++. . +..+|++++|+| ++.+|+++++++.|++|+-
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEc
Confidence 999999998 999997532 33443 2 567899999999 6799999999999999973
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-22 Score=182.44 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=180.1
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEE-E
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVA-A 87 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~-~ 87 (343)
.+..+++...+.+++|+| +++++ ++++.|+. |++|++... +++..+.+...+.+++|+ +++.|+ +
T Consensus 24 ~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~d~~-----i~v~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 24 VTATIPVGSNPMGAVISP----DGTKVYVANAHSND-----VSIIDTATN---NVIATVPAGSSPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp EEEEEECSSSEEEEEECT----TSSEEEEEEGGGTE-----EEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred EEEEeecCCCcceEEECC----CCCEEEEECCCCCe-----EEEEECCCC---eEEEEEECCCCccceEECCCCCEEEEE
Confidence 445556667799999999 77665 67777754 779999542 334455566699999999 677664 5
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.++.|++||+...+.+.... +...+.++.|+ ++.+ ++++.|+.|++||+.+++ ....+..+. .+.+++
T Consensus 92 ~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~--~~~~~~ 164 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVGR--SPKGIA 164 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECCS--SEEEEE
T ss_pred ECCCCEEEEEECCCCeEEEEEe----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecCC--CcceEE
Confidence 5567999999998766554443 33568999998 6666 788889999999999884 555555554 489999
Q ss_pred eCC-CCEE-EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEEccC
Q 019258 165 WAS-PTEF-VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWDLRW 240 (343)
Q Consensus 165 ~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd~~~ 240 (343)
|+| +..+ ++++.++.|++||++. ++....+.. . ..+.+++|+|++..+++++. .++.|++||+++
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~-~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVT---NSVIDTVKV-E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEEC-S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEEec-C-------CCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 999 5555 6777899999999988 555544442 2 56899999999887765554 789999999988
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
++....+. .| ..+.+++|+|++.. .+++++.|+.|++|+...
T Consensus 234 ~~~~~~~~-----------~~-~~~~~~~~s~dg~~---------l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 234 NKITARIP-----------VG-PDPAGIAVTPDGKK---------VYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp TEEEEEEE-----------CC-SSEEEEEECTTSSE---------EEEEETTTTEEEEEETTT
T ss_pred CeEEEEEe-----------cC-CCccEEEEccCCCE---------EEEEcCCCCEEEEEECCC
Confidence 64433332 23 35789999999874 447889999999999753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-23 Score=179.99 Aligned_cols=282 Identities=10% Similarity=-0.009 Sum_probs=178.3
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CCCeeEEEcc--CCCeEEEEcCCCcEE-
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PTRISSLSTS--HQSLVAASTLSGSLH- 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~~v~~v~~~--~~~~l~~~s~dg~v~- 95 (343)
.+..|.|-.+. -....+++++.+ .+++|+..+.-+++++.++.. +.+|..+.|. .-+++.++-.+=.+.
T Consensus 41 ~~~~~~~~~~~-~~~~~~~~~~~~------~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 113 (356)
T 2w18_A 41 DVSAMFWERAG-CKEPCIITACED------VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIRE 113 (356)
T ss_dssp EEEEEEEC-----CEEEEEEEESS------EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEE
T ss_pred EEeeeeeccCC-CCccEEEEeccc------eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccc
Confidence 37778887732 122466777765 578999977545566666554 4589999998 345666665544433
Q ss_pred EEEcc--Cc----eeeeeeccCCccccCeEEEEecCCEEEEEe---CCCcEEEEECCC-CceEEEEEcCCCccceEEEEe
Q 019258 96 VLSSA--MQ----VLLSVDENSGFHVGPISGVDLTGSECVSVG---EDGRVNLVSVIG-GGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 96 v~~~~--~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s---~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 165 (343)
++-+. .. ...... .+|...|.++ ....+++.+ .|+.|++|++.. ++ .......|.. .++.++|
T Consensus 114 v~sla~spd~~~~~~~l~s---~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~-~~~s~~~~~~-~v~~l~f 186 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLK---SGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGG-GKENQFLMPP-EETILTF 186 (356)
T ss_dssp EEEECC------CCEEEEE---EEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSC-EEEEEEECCC-SSCEEEE
T ss_pred eEEEEECCCccccccEEEe---CCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCc-eeeeeccCCC-ceeeEEe
Confidence 22222 11 111111 2355555544 444454443 599999999954 54 4333333443 4666666
Q ss_pred CC----CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE-----------EEEEecC
Q 019258 166 AS----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT-----------CLAGGSS 230 (343)
Q Consensus 166 ~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~-----------~~sg~~d 230 (343)
++ +..|++++.|++|+|||+++ ++.+.++..+.... ..+.+++|+|++..+ +++|+.|
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWDl~T---Gk~l~tL~g~~~~v----~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWNLKT---GQLLKKMHIDDSYQ----ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEETTT---CCEEEEEECCC-------CCCEEEEEEETTEEEEEEC------------CC
T ss_pred eccCCCCceEEEecCCCcEEEEECCC---CcEEEEEcCCCcce----eeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 65 57899999999999999999 88888887554211 468888999988654 3678899
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccc
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFEL 308 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~ 308 (343)
++|++||.+++.....+.- . ...+|...+.+..++ +. .+++++.||+|++||.... ..++
T Consensus 260 ~tIklWd~~tgk~l~v~~~-~-----~p~Gh~~~~lsg~~s--g~----------~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLY-C-----LPPGQAGRFLEGDVK--DH----------CAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EEEEEEETTTTEEEEEEEE-C-----CCTTCCCCEEEEEEE--TT----------EEEEEETTSCEEEEETTTCSEEEEE
T ss_pred cEEEEEECCCCEEEEEEEe-e-----ccCCCcceeEccccC--CC----------EEEEEcCCCcEEEEECCCCcEEEEe
Confidence 9999999987654332210 0 013565555444444 44 7899999999999998643 2333
Q ss_pred ccccc-ccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 309 LAEPC-AINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 309 ~~~~~-~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..+.. .+.+++|+| +|++|++|++|+.|++|+
T Consensus 322 ~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 322 PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEE
T ss_pred cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEec
Confidence 33444 455689999 679999999999999997
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-23 Score=190.46 Aligned_cols=243 Identities=9% Similarity=0.024 Sum_probs=180.3
Q ss_pred CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeec--cCCccccCeEEEEec--CCEEEEEeCCCcEEE
Q 019258 65 HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDE--NSGFHVGPISGVDLT--GSECVSVGEDGRVNL 139 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~--~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~ 139 (343)
+..+.....+.+++|+ ++.++++++.++.|++||+...+...... ....|.+.|.++.|. +..+++++.|+.|++
T Consensus 116 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 116 ISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp EEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 4445556677899999 66677777788999999998665543222 123588899999997 778899999999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
||+++++ ....+..+.. .+.+++|+| +..++ +++.|+.|++||++. ++.+..+..+ ..+.+++|+
T Consensus 196 ~d~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~--------~~~~~~~~~ 262 (433)
T 3bws_A 196 FDLKTLA-YKATVDLTGK-WSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDKI--------GLPRGLLLS 262 (433)
T ss_dssp EETTTCC-EEEEEECSSS-SEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCCC--------SEEEEEEEC
T ss_pred EECCCce-EEEEEcCCCC-CeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecCC--------CCceEEEEc
Confidence 9999875 4444444544 799999999 66664 555799999999988 5555555432 458999999
Q ss_pred CCCCeEEEEEe-------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 218 PSRKHTCLAGG-------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 218 p~~~~~~~sg~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
|++..+++++. .||.|++||+++++..... .|...+..++|+|++.. .++++
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~------------~~~~~~~~~~~~~~g~~---------l~~~~ 321 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI------------GPPGNKRHIVSGNTENK---------IYVSD 321 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE------------EEEECEEEEEECSSTTE---------EEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec------------cCCCCcceEEECCCCCE---------EEEEe
Confidence 99876654432 5889999999875433332 25678899999999875 56777
Q ss_pred ecCCeEEEEecCCC-cccccccccccceeeecCCCCCeeEEccC---------------CceEEEEeC
Q 019258 291 SEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLE---------------WESIAIVSR 342 (343)
Q Consensus 291 s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~---------------~~~i~~~~~ 342 (343)
+.|+.|++|+.... ....+.....+.+++++| ++.+|++++. ++.|++|+-
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred cCCCEEEEEECCCCcEEEEecCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 99999999998633 333344456789999999 5677777765 458999873
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=180.23 Aligned_cols=185 Identities=14% Similarity=0.079 Sum_probs=124.1
Q ss_pred CCeEEEEc---CCCcEEEEEccC-ceeeeeeccCCccccCeEEEEec-----CCEEEEEeCCCcEEEEECCCCceEEEEE
Q 019258 82 QSLVAAST---LSGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT-----GSECVSVGEDGRVNLVSVIGGGEFKRVY 152 (343)
Q Consensus 82 ~~~l~~~s---~dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~s~s~dg~v~~wd~~~~~~~~~~~ 152 (343)
+..++.++ .|+.|++|++.. ++.+.... .|...+..++|+ +..+++++.|++|++||+.+++ ....+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~---~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL 219 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF---LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKM 219 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEE---ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeec---cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEE
Confidence 34444444 499999999963 44333222 466666665555 5899999999999999999996 44444
Q ss_pred cCCC--ccceEEEEeCC-CCEE------------EEEeCCCcEEEEEccccCCCCCeeEEec--ccCCCCCcccCeEEEE
Q 019258 153 DGNG--LVGFNCVKWAS-PTEF------------VTGGFGYGLQWWDLRRAGSGGPVLQFKG--NFGSQGKASGMIHSVD 215 (343)
Q Consensus 153 ~~~~--~~~v~~~~~~~-~~~l------------~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~v~ 215 (343)
..++ ...+.+++|+| +..+ ++|+.|++|++||..+ ++.+..+.. ..++. ..+.+.+
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t---gk~l~v~~~~~p~Gh~----~~~lsg~ 292 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT---TLSVGVMLYCLPPGQA----GRFLEGD 292 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT---TEEEEEEEECCCTTCC----CCEEEEE
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC---CEEEEEEEeeccCCCc----ceeEccc
Confidence 4332 12577788888 4443 5678899999999987 555544321 11111 3344444
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEE-EEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVW-EVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
++ + .++++|+.||+|+|||+++++....+ .+|...+. .++|+|++. +|++||.|+
T Consensus 293 ~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL-----------~gH~~~vvs~vafSPDG~----------~LaSGS~D~ 348 (356)
T 2w18_A 293 VK--D-HCAAAILTSGTIAIWDLLLGQCTALL-----------PPVSDQHWSFVKWSGTDS----------HLLAGQKDG 348 (356)
T ss_dssp EE--T-TEEEEEETTSCEEEEETTTCSEEEEE-----------CCC--CCCCEEEECSSSS----------EEEEECTTS
T ss_pred cC--C-CEEEEEcCCCcEEEEECCCCcEEEEe-----------cCCCCCeEEEEEECCCCC----------EEEEEECCC
Confidence 43 3 36789999999999999986655443 45766655 589999988 799999999
Q ss_pred eEEEEec
Q 019258 295 ILAVVEQ 301 (343)
Q Consensus 295 ~i~~~~~ 301 (343)
+|++|+.
T Consensus 349 TIklWd~ 355 (356)
T 2w18_A 349 NIFVYHY 355 (356)
T ss_dssp CEEEEEE
T ss_pred cEEEecC
Confidence 9999984
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-22 Score=180.22 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=190.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecC--CC-CCCceeeeeC--CCCCCCCCCccCCCCCCeeEEEcc-------------
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDT--DA-DSPSLETHSI--SLPASLTPHSQWTPPTRISSLSTS------------- 80 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~--~~-~~~~l~~w~~--~~~~~~~~~~~~~~~~~v~~v~~~------------- 80 (343)
..|+..+|.+ ...+.+++|+.+. .. ..+.+++||+ .............|...+..+++.
T Consensus 63 ~~~~~~~w~~---~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 63 QEVQPAAWSA---LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GGCCHHHHHT---TTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCHHHHHh---cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 4788889999 3457788998652 11 1235789999 553321111123455556555544
Q ss_pred --CCCeEEEEcCC------CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC---cEEEEECCCCce
Q 019258 81 --HQSLVAASTLS------GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG---RVNLVSVIGGGE 147 (343)
Q Consensus 81 --~~~~l~~~s~d------g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg---~v~~wd~~~~~~ 147 (343)
.+..++.++.+ +.|++||+.......+. .|...+.+++|+ ++.+++++.|+ .|++||+.+++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~----~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~- 214 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA- 214 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE----EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe----CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-
Confidence 15566666554 79999999743322222 478899999999 88999999885 99999999884
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCc--EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYG--LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
...+.. +.. .+.+++|+| +..|+ +++.++. |++||++. ++ ...+..+. ..+.+++|+|++..+
T Consensus 215 ~~~l~~-~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~-~~~l~~~~-------~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 215 VRQVAS-FPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQ-IRQVTDGR-------SNNTEPTWFPDSQNL 281 (415)
T ss_dssp EEEEEC-CSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CC-EEECCCCS-------SCEEEEEECTTSSEE
T ss_pred EEEeec-CCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CC-EEeCcCCC-------CcccceEECCCCCEE
Confidence 444443 333 699999999 66666 6665555 99999977 33 34555443 679999999999876
Q ss_pred EEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---CeEEE
Q 019258 224 CLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GILAV 298 (343)
Q Consensus 224 ~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~ 298 (343)
++++..+| .|++||+..+.. .. . ..|...+..++|+|++. .|++++.+ +.|++
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~-~~-l----------~~~~~~~~~~~~spdG~----------~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAP-QR-I----------TWEGSQNQDADVSSDGK----------FMVMVSSNGGQQHIAK 339 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCC-EE-C----------CCSSSEEEEEEECTTSS----------EEEEEEECSSCEEEEE
T ss_pred EEEECCCCCcEEEEEECCCCCE-EE-E----------ecCCCcccCeEECCCCC----------EEEEEECcCCceEEEE
Confidence 65544456 677778876432 22 2 23567889999999988 57776654 47999
Q ss_pred EecCCCcccccccccccceeeecCCCCCeeEEccCCc---eEEEEe
Q 019258 299 VEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWE---SIAIVS 341 (343)
Q Consensus 299 ~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~---~i~~~~ 341 (343)
|+........+.....+.++.|+| +|+.|+.++.++ .|++|+
T Consensus 340 ~d~~~~~~~~l~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 340 QDLATGGVQVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp EETTTCCEEECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEecCCCCcCCeEEcC-CCCEEEEEEcCCCccEEEEEE
Confidence 998644333344444899999999 678888887666 788875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-20 Score=161.38 Aligned_cols=274 Identities=10% Similarity=0.114 Sum_probs=178.3
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC-CcEEEEEcc--Cceeeeeecc
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS-GSLHVLSSA--MQVLLSVDEN 110 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d-g~v~v~~~~--~~~~~~~~~~ 110 (343)
.++++++.|+. +++|++........+..+.+...+.+++|+ ++++|++++.+ +.|.+|++. ......+...
T Consensus 6 ~l~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 6 TVYIASPESQQ-----IHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEGGGTE-----EEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCCCCCe-----EEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 44555566654 779998543333344556677889999999 77878888776 999999997 3322222111
Q ss_pred CCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEE
Q 019258 111 SGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWW 183 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iw 183 (343)
. .+ +.+..+.|+ ++.+++++ .++.|.+||+..+. ........+. .+.+++|+| ++.+++++ .++.|++|
T Consensus 81 ~-~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 81 A-LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD--GCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp E-CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT--TBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred c-cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC--CceEEEECCCCCEEEEecCCCCEEEEE
Confidence 1 12 267888888 77676555 58899999995321 2333443333 588999999 66677776 79999999
Q ss_pred EccccCCCCCee-----EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee---eeee-cCCCCc
Q 019258 184 DLRRAGSGGPVL-----QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS---IVLS-GVGTGE 254 (343)
Q Consensus 184 d~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~-~~~~~~ 254 (343)
|+.. ...+. .+....+ ..+..++|+|++..+++++..++.|.+||+...... .... ....
T Consensus 157 d~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~-- 225 (343)
T 1ri6_A 157 TVSD---DGHLVAQDPAEVTTVEG------AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE-- 225 (343)
T ss_dssp EECT---TSCEEEEEEEEEECSTT------CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT--
T ss_pred EecC---CCceeeecccccccCCC------CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc--
Confidence 9976 23332 2222211 458899999999878777778999999999542111 1111 0000
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC--Ccccc---cccccccceeeecCCCCCeeE
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE--EPFEL---LAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~---~~~~~~i~s~~~~~~~~~~l~ 329 (343)
.......+..++|+|++.. .+++++.|+.|.+|+... ..... ......+.+++++| +|++|+
T Consensus 226 ---~~~~~~~~~~i~~s~dg~~---------l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 292 (343)
T 1ri6_A 226 ---NFSDTRWAADIHITPDGRH---------LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLI 292 (343)
T ss_dssp ---TCCSCCCEEEEEECTTSSE---------EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEE
T ss_pred ---cccccCCccceEECCCCCE---------EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECC-CCCEEE
Confidence 0011345778999999874 444667899999999762 21122 22234488999999 567777
Q ss_pred Ecc-CCceEEEEe
Q 019258 330 CSL-EWESIAIVS 341 (343)
Q Consensus 330 ~~~-~~~~i~~~~ 341 (343)
+++ +++.|.+|+
T Consensus 293 ~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 293 AAGQKSHHISVYE 305 (343)
T ss_dssp EECTTTCEEEEEE
T ss_pred EecCCCCeEEEEE
Confidence 766 678999984
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-20 Score=157.60 Aligned_cols=245 Identities=16% Similarity=0.182 Sum_probs=170.4
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccC-ceeeeeeccCCccccCeEEEEec--C
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT--G 125 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~--~ 125 (343)
.|++|++.... ......|.+.|.+++|+ ++.+|++++ ++.|++|++.. .+...+... .+...+.++.|+ +
T Consensus 23 ~i~~~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 23 SIEIFNIRTRK---MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG--FATICNNDHGISPDG 96 (297)
T ss_dssp EEEEEETTTTE---EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT--TCCCBCSCCEECTTS
T ss_pred eEEEEeCCCCc---eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc--cccccccceEECCCC
Confidence 48899996532 23344578899999999 778888775 88999999986 554433321 234678889998 8
Q ss_pred CEEEEEe--CCCcEEEEEC--CCCceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEccccCCCCCeeEEec
Q 019258 126 SECVSVG--EDGRVNLVSV--IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 126 ~~~~s~s--~dg~v~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+.+++++ .++...+|.+ .++. .. .+..+. .+..++|+| +..++ +++.++.+++|++.. .......+..
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 170 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT-PR-LMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI--DSGVETRLTH 170 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC-CE-ECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEET--TTCCEEECCC
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc-eE-EeecCC--CccceEECCCCCEEEEEECCCCceEEEEEEC--CCCcceEccc
Confidence 8898888 4455666655 4442 33 333333 488899999 66665 777899999999865 2344444443
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
+. ..+.+++|+|++..+++++..++.+.+|++.......... ..|...+..+.|+|++.
T Consensus 171 ~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~---- 229 (297)
T 2ojh_A 171 GE-------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI----------TDSAYGDWFPHPSPSGD---- 229 (297)
T ss_dssp SS-------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC----------CCCSEEEEEEEECTTSS----
T ss_pred CC-------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE----------ecCCcccCCeEECCCCC----
Confidence 33 6799999999998777666679999999987433333333 45677899999999987
Q ss_pred CCCCccceEEEecC-----------CeEEEEecCCCcc-ccc---ccccccceeeecCCCCCeeEEccCC
Q 019258 280 SSSRVLPAMFCSED-----------GILAVVEQGEEPF-ELL---AEPCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 280 ~~~~~~~l~s~s~d-----------g~i~~~~~~~~~~-~~~---~~~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
.|++++.+ +.|++|+...... .+. .....+.++.|+| ++++|+.++++
T Consensus 230 ------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 230 ------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp ------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 67777665 5699999754332 222 2346799999999 56777766654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-18 Score=158.01 Aligned_cols=246 Identities=12% Similarity=0.068 Sum_probs=174.4
Q ss_pred CCeEEEEeecCCC-CCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC---cEEEEEccCceeeeee
Q 019258 34 SKLAVLAIYDTDA-DSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG---SLHVLSSAMQVLLSVD 108 (343)
Q Consensus 34 ~~~l~t~s~D~~~-~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg---~v~v~~~~~~~~~~~~ 108 (343)
+..++.++.+... ..-.|++|++.... ......|.+.|.+++|+ +++.|+.++.++ .|++||+...+...+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 6677777765321 11368899995422 23334577899999999 888999998875 9999999866544332
Q ss_pred ccCCccccCeEEEEec--CCEEE-EEeCCCc--EEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC--c
Q 019258 109 ENSGFHVGPISGVDLT--GSECV-SVGEDGR--VNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY--G 179 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~-s~s~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~--~ 179 (343)
.|.+.+.++.|+ ++.++ +++.|+. |.+||+.+++ ...+ ..+.. .+.+++|+| +..|++++. ++ .
T Consensus 220 ----~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~~~l-~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 220 ----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQV-TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEC-CCCSS-CEEEEEECTTSSEEEEEECTTSSCE
T ss_pred ----cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-EEeC-cCCCC-cccceEECCCCCEEEEEECCCCCcE
Confidence 366789999999 77677 6776665 9999998874 4444 33443 699999999 777887776 45 6
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC--CcEEEEEccCCceeeeeecCCCCcccc
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS--GTVFAWDLRWQQQSIVLSGVGTGEAVT 257 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~ 257 (343)
|.+||+.. ++ ...+..+. ..+.+++|+|++..+++++..+ ..|++||+.+++. ..+
T Consensus 293 i~~~d~~~---~~-~~~l~~~~-------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l---------- 350 (415)
T 2hqs_A 293 VYKVNING---GA-PQRITWEG-------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL---------- 350 (415)
T ss_dssp EEEEETTS---SC-CEECCCSS-------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC----------
T ss_pred EEEEECCC---CC-EEEEecCC-------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEe----------
Confidence 77778866 33 33343332 5688999999998776555443 5899999987543 222
Q ss_pred cCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC---eEEEEecCCCcccccc-cccccceeeecCC
Q 019258 258 HSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG---ILAVVEQGEEPFELLA-EPCAINSFDIDPQ 323 (343)
Q Consensus 258 ~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg---~i~~~~~~~~~~~~~~-~~~~i~s~~~~~~ 323 (343)
..|. .+..++|+|++. .|++++.|+ .|++|+........+. ....|.+++|+|.
T Consensus 351 -~~~~-~~~~~~~spdg~----------~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 351 -SSTF-LDETPSLAPNGT----------MVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp -CCSS-SCEEEEECTTSS----------EEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred -cCCC-CcCCeEEcCCCC----------EEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 2333 789999999988 677777776 7999997655444444 4578999999983
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-19 Score=163.37 Aligned_cols=208 Identities=9% Similarity=-0.058 Sum_probs=147.5
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-------C---C---CCCCccCCCCCCeeEEEcc-CCC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-------A---S---LTPHSQWTPPTRISSLSTS-HQS 83 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-------~---~---~~~~~~~~~~~~v~~v~~~-~~~ 83 (343)
...++.++|+| ++.++++++.|+ +++|+.... . . ......+.+.+.|.+++|+ ++.
T Consensus 36 ~~~~n~lavs~----~~~~l~~~~~dg------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 36 KERSSLLAVSN----KYGLVFAGGASG------LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL 105 (434)
T ss_dssp CSCCBCEEEET----TTTEEEEEETTE------EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC
T ss_pred CCCccEEEEec----CCCEEEEECCCE------EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC
Confidence 34689999999 778888887763 556654210 0 0 0112234567789999999 888
Q ss_pred eEE----EEcCCCcEEEEEccCc--------eeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceE
Q 019258 84 LVA----ASTLSGSLHVLSSAMQ--------VLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 84 ~l~----~~s~dg~v~v~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
+|+ +++.|+.|+|||+... +.+.......+|...|.+++|+ +..+++++.||+|++||++++...
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 888 7788999999998743 2222233344699999999998 578999999999999999987433
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
... ..|.. .+.+++|+| +..|++|+.|++|++||++. .....+..+......+...+.+++|++++..+++.+
T Consensus 186 ~~~-~~~~~-~v~~v~wspdg~~lasgs~dg~v~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 186 CAT-LPSTV-AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL----QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EEE-ECGGG-CEEEEEECTTSSCEEEEETTSCEEEECTTC----CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred eec-cCCCC-ceeEEEEcCCCCEEEEEcCCCcEEEEccCC----cccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 333 34444 799999999 88999999999999999974 333334333211111124699999999876555555
Q ss_pred ecCCc------EEEEEccCC
Q 019258 228 GSSGT------VFAWDLRWQ 241 (343)
Q Consensus 228 ~~dg~------v~iwd~~~~ 241 (343)
+.||. +++||+++.
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCT
T ss_pred cCCCccCCCCceEEEEeccC
Confidence 56644 899999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=164.52 Aligned_cols=291 Identities=11% Similarity=0.068 Sum_probs=200.1
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-----CCCeE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-----HQSLV 85 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-----~~~~l 85 (343)
.+.+++....+..++++| ++++|++++.|+ +|.+||+.. ...+++..+.+...+..++|+ ++++|
T Consensus 171 ~~~~i~~g~~~~~v~~sp----dg~~l~v~~~d~-----~V~v~D~~~-~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l 240 (543)
T 1nir_A 171 IVKVIDTGYAVHISRMSA----SGRYLLVIGRDA-----RIDMIDLWA-KEPTKVAEIKIGIEARSVESSKFKGYEDRYT 240 (543)
T ss_dssp EEEEEECSTTEEEEEECT----TSCEEEEEETTS-----EEEEEETTS-SSCEEEEEEECCSEEEEEEECCSTTCTTTEE
T ss_pred EEEEEecCcccceEEECC----CCCEEEEECCCC-----eEEEEECcC-CCCcEEEEEecCCCcceEEeCCCcCCCCCEE
Confidence 455555445588999999 899999999884 377999931 113345556666778999998 46788
Q ss_pred EEEcC-CCcEEEEEccCceeeeeeccCC-------cccc-CeEEEEec---CCEEEEEeCCCcEEEEECCCCceEE-EEE
Q 019258 86 AASTL-SGSLHVLSSAMQVLLSVDENSG-------FHVG-PISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFK-RVY 152 (343)
Q Consensus 86 ~~~s~-dg~v~v~~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~-~~~ 152 (343)
++++. +++|.+||..+.+.+....... .|.. .+.++.++ ...+++...++.|.+||+.+.+.+. ..+
T Consensus 241 ~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 241 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 88874 8999999988666554443210 1333 68888887 3456778899999999998754332 222
Q ss_pred cCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-c
Q 019258 153 DGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-S 229 (343)
Q Consensus 153 ~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~ 229 (343)
. +.. .+.++.|+| +.++++++ .+++|.+||+.+ ++.+..+..... .|.+....+ ++|++..+++++. .
T Consensus 321 ~-~~~-~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~---ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 321 G-AAP-FLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKT---PHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp E-CCS-SCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSS---BCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred c-cCc-CccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCC---CCCCCCccc-CCCCCccEEEeccCC
Confidence 2 333 588899999 66565554 589999999988 666666653210 011223333 5787666777776 6
Q ss_pred CCcEEEEEccCC------ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-------cCCeE
Q 019258 230 SGTVFAWDLRWQ------QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-------EDGIL 296 (343)
Q Consensus 230 dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-------~dg~i 296 (343)
|++|.+||+... -+.+..+ ..|.+.+..|+|+|+++ .|++++ .+++|
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l----------~~~g~~~~~v~~~pdg~----------~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAEL----------QGQGGGSLFIKTHPKSS----------HLYVDTTFNPDARISQSV 451 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEE----------ECSCSCCCCEECCTTCC----------EEEECCTTCSSHHHHTCE
T ss_pred CceEEEEEeCCCCCchhcCeEEEEE----------EcCCCCceEEEcCCCCC----------cEEEecCCCCCcccCceE
Confidence 899999999762 1222333 45677888999999988 688877 37899
Q ss_pred EEEecCCC--ccccc--------cc-ccccceeeecCCCCCeeEEc-----cCCceEEEEe
Q 019258 297 AVVEQGEE--PFELL--------AE-PCAINSFDIDPQNPSDVICS-----LEWESIAIVS 341 (343)
Q Consensus 297 ~~~~~~~~--~~~~~--------~~-~~~i~s~~~~~~~~~~l~~~-----~~~~~i~~~~ 341 (343)
.+||.... ..+.+ .+ ...+..+++++ +|+.|..+ +++++|.||+
T Consensus 452 ~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 452 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEE
Confidence 99997532 22332 22 45789999999 57888754 3468999986
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-18 Score=151.13 Aligned_cols=285 Identities=9% Similarity=0.001 Sum_probs=192.5
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCC--CCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe-EE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDA--DSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL-VA 86 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~--~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~-l~ 86 (343)
.+...+....+..++|+| +++++++++.++.. +.-.|++|+.... +....+.....+.++.|+ +++. ++
T Consensus 33 ~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 33 EMLRKAVGKGAYEMAYSQ----QENALWLATSQSRKLDKGGVVYRLDPVTL---EVTQAIHNDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp CEEEEEEESSEEEEEEET----TTTEEEEEECCCTTTEESEEEEEECTTTC---CEEEEEEESSCCCSEEEETTTTEEEE
T ss_pred hhhhhhhccCccceEECC----CCCEEEEEcCCCcCCCCCccEEEEcCCCC---eEEEEEecCCCcceEEECCCCCEEEE
Confidence 456667778899999999 77777777755310 0125789998542 233344445567889998 6664 45
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccc------cCeEEEEec--CCEEEEEe--CCCcEEEEECCCCceEEEEEcCCC
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHV------GPISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFKRVYDGNG 156 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~------~~v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~~~~~~~~ 156 (343)
+...++.|.+||....+.+.......... ....++.++ ++.++.++ .++.|.+||..+++ ....+..+.
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~ 184 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTG 184 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCC
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCC
Confidence 55668999999998665443333211110 126788887 67666554 58899999999885 555544233
Q ss_pred ccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 157 LVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
. .+.++.|+| ++.+++++.++.|.+||+.. ++....+..... . ....+..++|+|++..++++...++.|.+
T Consensus 185 ~-~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~-~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 185 K-MSTGLALDSEGKRLYTTNADGELITIDTAD---NKILSRKKLLDD-G--KEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp T-TCCCCEEETTTTEEEEECTTSEEEEEETTT---TEEEEEEECCCS-S--SCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred C-ccceEEECCCCCEEEEEcCCCeEEEEECCC---CeEEEEEEcCCC-C--CCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 2 478889999 77888899999999999988 665555543211 0 11458889999999888777777799999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccc
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCA 314 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~ 314 (343)
||+.+++....+. ... -..++|+|++.. .+++...++.|.+|+.... ..........
T Consensus 258 ~d~~~~~~~~~~~----------~~~---~~~~~~s~dg~~---------l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 258 VDTRNGNILAKVA----------APE---SLAVLFNPARNE---------AYVTHRQAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp EETTTCCEEEEEE----------CSS---CCCEEEETTTTE---------EEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred EECCCCcEEEEEE----------cCC---CceEEECCCCCE---------EEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence 9998765443333 111 256999999874 4555567999999997533 3333334456
Q ss_pred cceeeecCCCCCeeEEccC
Q 019258 315 INSFDIDPQNPSDVICSLE 333 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~ 333 (343)
..+++++| +|++|+.+..
T Consensus 316 ~~~~~~s~-dg~~l~v~~~ 333 (353)
T 3vgz_A 316 PNSLALSA-DGKTLYVSVK 333 (353)
T ss_dssp EEEEEECT-TSCEEEEEEE
T ss_pred CCeEEEcC-CCCEEEEEEc
Confidence 78999998 5565555443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-18 Score=148.96 Aligned_cols=258 Identities=10% Similarity=0.081 Sum_probs=166.3
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc-CCCeEEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~ 88 (343)
.+..+++...+..++|+| +++++++++.+. + .+.+|++... .....+..+...+.+..++|+ +++.|+++
T Consensus 30 ~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~~--~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 101 (343)
T 1ri6_A 30 LTQVVDVPGQVQPMVVSP----DKRYLYVGVRPE--F--RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG 101 (343)
T ss_dssp EEEEEECSSCCCCEEECT----TSSEEEEEETTT--T--EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE
T ss_pred EeeeEecCCCCceEEECC----CCCEEEEeecCC--C--eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEE
Confidence 344556777899999999 888888887762 1 4779998521 222233344445588999999 77766655
Q ss_pred c-CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCC-CceEEE----EEcCCCccc
Q 019258 89 T-LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIG-GGEFKR----VYDGNGLVG 159 (343)
Q Consensus 89 s-~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~-~~~~~~----~~~~~~~~~ 159 (343)
+ .++.|.+|++............ .....+.++.|+ ++.+++++ .++.|.+||+.+ ++ ... ....+....
T Consensus 102 ~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~ 179 (343)
T 1ri6_A 102 SYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAG 179 (343)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCC
T ss_pred ecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCC
Confidence 5 5889999999422222111111 122357888888 67777766 899999999987 53 322 122222226
Q ss_pred eEEEEeCC-CCEEEEE-eCCCcEEEEEccccCCCCC--eeEEecccC-CCCCcccCeEEEEEcCCCCeEEEEEecCCcEE
Q 019258 160 FNCVKWAS-PTEFVTG-GFGYGLQWWDLRRAGSGGP--VLQFKGNFG-SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~ 234 (343)
+.+++|+| +..++.+ ..++.|.+||+... .+.. ...+..... ..+ ...+..++|+|++..+++++..++.|.
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~--~~~~~~i~~s~dg~~l~v~~~~~~~i~ 256 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENFSD--TRWAADIHITPDGRHLYACDRTASLIT 256 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCS--CCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccccc--cCCccceEECCCCCEEEEEecCCCEEE
Confidence 88999999 6655544 47999999999540 1222 222221110 010 135778999999988877777899999
Q ss_pred EEEccC--Cc-eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEecC
Q 019258 235 AWDLRW--QQ-QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQG 302 (343)
Q Consensus 235 iwd~~~--~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~~ 302 (343)
+||++. .. ...... ..+ ..+..++|+|++. .|++++ .++.|.+|+.+
T Consensus 257 v~d~~~~~~~~~~~~~~----------~~~-~~~~~~~~s~dg~----------~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 257 VFSVSEDGSVLSKEGFQ----------PTE-TQPRGFNVDHSGK----------YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTSCCEEEEEEE----------ECS-SSCCCEEECTTSS----------EEEEECTTTCEEEEEEEE
T ss_pred EEEEcCCCCceEEeeee----------cCC-CccceEEECCCCC----------EEEEecCCCCeEEEEEEc
Confidence 999973 11 222222 222 2388999999987 566665 78999999543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-17 Score=144.28 Aligned_cols=267 Identities=8% Similarity=0.021 Sum_probs=173.0
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEcc-CCCeEEEEcC-CCcEEEEEccCcee-eeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTS-HQSLVAASTL-SGSLHVLSSAMQVL-LSVD 108 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~-~~~~l~~~s~-dg~v~v~~~~~~~~-~~~~ 108 (343)
.+..+++++.++. |.+|++..... ...+. +...+ .++|+ +++.+++++. ++.|.+||....+. ....
T Consensus 9 ~~~~~v~~~~~~~-----v~~~d~~~~~~---~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 9 SNFGIVVEQHLRR-----ISFFSTDTLEI---LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CCEEEEEEGGGTE-----EEEEETTTCCE---EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CCEEEEEecCCCe-----EEEEeCcccce---eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 4566778877754 77999865322 22222 23445 99999 7775655554 89999999985543 2222
Q ss_pred ccCCccccCeEEEEec--CCEEEEEeCCC---cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC-EEEEEeCCCc-E
Q 019258 109 ENSGFHVGPISGVDLT--GSECVSVGEDG---RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT-EFVTGGFGYG-L 180 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~--~~~~~s~s~dg---~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~t~~~d~~-i 180 (343)
. .+..++.++.++ ++.++++..++ .|.+||+.+++ ....+..+. ...+++|+| ++ .+++...++. |
T Consensus 80 ~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 80 Q---EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPIPY--DAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp E---ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEE
T ss_pred c---cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEECCC--CccceEECCCCCEEEEEecCCCceE
Confidence 1 244555558887 77788554443 89999999885 454544444 478999999 54 4555566688 9
Q ss_pred EEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce---eeeeecCCCCcccc
Q 019258 181 QWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ---SIVLSGVGTGEAVT 257 (343)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~ 257 (343)
.+|++.. ...+.......- . .......++|+|++..+++++..++.|.+||+++.+. ...+.
T Consensus 154 ~~~~~~~---~g~~~~~~~~~~-~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--------- 218 (331)
T 3u4y_A 154 RRFKIDA---DGVLFDTGQEFI-S--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--------- 218 (331)
T ss_dssp EEEEECT---TCCEEEEEEEEE-C--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---------
T ss_pred EEEEECC---CCcEeecCCccc-c--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---------
Confidence 9999976 333322110000 0 0145789999999988888888899999999987654 32222
Q ss_pred cCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc--------cccc---ccceeeecCCCCC
Q 019258 258 HSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL--------AEPC---AINSFDIDPQNPS 326 (343)
Q Consensus 258 ~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~--------~~~~---~i~s~~~~~~~~~ 326 (343)
....+..++|+|++.. .+++...++.|.+|+......+.. ..+. ..++++++| +++
T Consensus 219 ---~~~~~~~~~~spdg~~---------l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~ 285 (331)
T 3u4y_A 219 ---TNNLPGTIVVSRDGST---------VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TET 285 (331)
T ss_dssp ---CSSCCCCEEECTTSSE---------EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSS
T ss_pred ---CCCCCceEEECCCCCE---------EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCC
Confidence 2356788999999884 344555678899999754322100 1111 236689999 557
Q ss_pred ee-EEccCCceEEEEeC
Q 019258 327 DV-ICSLEWESIAIVSR 342 (343)
Q Consensus 327 ~l-~~~~~~~~i~~~~~ 342 (343)
+| +++.+++.|.+|+-
T Consensus 286 ~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 286 KLFISANISRELKVFTI 302 (331)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEecCCCCcEEEEEe
Confidence 66 55556679999873
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=168.25 Aligned_cols=283 Identities=9% Similarity=0.002 Sum_probs=184.9
Q ss_pred ccceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCccCCCC----------------------CCe
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHSQWTPP----------------------TRI 74 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~~~~~~----------------------~~v 74 (343)
...|..++|+| ++++|++++. |+......|++|++...........-.+. ..|
T Consensus 36 ~~~~~~~~~Sp----dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAP----DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECT----TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEec----CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 56799999999 9999999998 75322335889999653221111111111 237
Q ss_pred eEEEcc-CCCeEEEEcCCCcEEEEEccCc---eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 75 SSLSTS-HQSLVAASTLSGSLHVLSSAMQ---VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~dg~v~v~~~~~~---~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
.+++|+ +++.|++++. +.|++|++... +... ...|...+..+.|+ |+.++.++. +.|.+||+.+++ .
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~-~ 184 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR-Q 184 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE-E
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC-E
Confidence 899999 8888888876 99999999855 3222 22467789999999 788888774 589999999874 4
Q ss_pred EEEEcCCCcc---------------ceEEEEeCC-CCEEEEEeCCC---------------------------------c
Q 019258 149 KRVYDGNGLV---------------GFNCVKWAS-PTEFVTGGFGY---------------------------------G 179 (343)
Q Consensus 149 ~~~~~~~~~~---------------~v~~~~~~~-~~~l~t~~~d~---------------------------------~ 179 (343)
..+...+... .+..+.|+| +..|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 4443332210 147799999 77788887765 7
Q ss_pred EEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe----cCCcEEEEEccCCceeeeeecCCCCcc
Q 019258 180 LQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG----SSGTVFAWDLRWQQQSIVLSGVGTGEA 255 (343)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~ 255 (343)
|.+||+.. ......+..... +...+..++| |++..+++++. .+..|++||+.+++....+.
T Consensus 265 l~~~d~~~---~~~~~~~~~~~~----~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------- 329 (741)
T 2ecf_A 265 LGVISPAE---QAQTQWIDLGKE----QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH------- 329 (741)
T ss_dssp EEEECSST---TCCCEEECCCSC----SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-------
T ss_pred EEEEECCC---CCceEEecCCCC----cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-------
Confidence 88888744 122333321111 1166999999 99987765544 35689999998865433322
Q ss_pred cccCCccc----cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE--ecCCCccccccccccccee-eecCCCCCee
Q 019258 256 VTHSLSES----EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV--EQGEEPFELLAEPCAINSF-DIDPQNPSDV 328 (343)
Q Consensus 256 ~~~~~h~~----~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~--~~~~~~~~~~~~~~~i~s~-~~~~~~~~~l 328 (343)
.+.. .+..++|+|++. .+++++.||.+.+| +.......+......+.++ .++| +++.|
T Consensus 330 ----~~~~~~~~~~~~~~~spdg~----------~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~-dg~~l 394 (741)
T 2ecf_A 330 ----ETSPTWVPLHNSLRFLDDGS----------ILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDE-KAGLA 394 (741)
T ss_dssp ----EECSSCCCCCSCCEECTTSC----------EEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEET-TTTEE
T ss_pred ----cCCCCcCCcCCceEECCCCe----------EEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeC-CCCEE
Confidence 1221 456899999987 68888899865555 4333333333344567776 5898 45655
Q ss_pred -EEccCCc--eEEEEe
Q 019258 329 -ICSLEWE--SIAIVS 341 (343)
Q Consensus 329 -~~~~~~~--~i~~~~ 341 (343)
+++++++ .+++|.
T Consensus 395 ~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 395 YFRAGIESARESQIYA 410 (741)
T ss_dssp EEEECSSCTTCBEEEE
T ss_pred EEEEeCCCCceEEEEE
Confidence 4555554 666664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-18 Score=166.15 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=185.9
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
..|..++|+| + ..++.+ .|+ .+++|++.... +.....+.+.+.+++|+ +++.|+.+ .++.|++|
T Consensus 82 ~~v~~~~~sp----d-~~~~~~-~~~-----~i~~~d~~~~~---~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 82 FPSFRTLDAG----R-GLVVLF-TQG-----GLVGFDMLARK---VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIA 146 (706)
T ss_dssp CCCEEEEETT----T-TEEEEE-ETT-----EEEEEETTTTE---EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEE
T ss_pred cCceeEEECC----C-CeEEEE-ECC-----EEEEEECCCCc---eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEE
Confidence 5699999999 6 555544 343 48899995532 22334556778999999 78888774 78999999
Q ss_pred EccC-----ceeeeeeccCCcccc--------------CeEEEEec--CCEEEEEe------------------------
Q 019258 98 SSAM-----QVLLSVDENSGFHVG--------------PISGVDLT--GSECVSVG------------------------ 132 (343)
Q Consensus 98 ~~~~-----~~~~~~~~~~~~h~~--------------~v~~~~~~--~~~~~s~s------------------------ 132 (343)
++.. .+...+.. .+.. .+.++.|+ ++.|++++
T Consensus 147 ~~~~~~~~~g~~~~~~~---~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTI---DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp ECBCTTSCCCCCEESCS---CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred ecCcccccCCCcEEecc---CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 9986 55443322 1222 24788998 88898887
Q ss_pred ---------CCCcEEEEECCCCceEEEEEc--CCCccceEEEEeCC-CCEEEEEeCCC-----cEEEEEccccCCCCCee
Q 019258 133 ---------EDGRVNLVSVIGGGEFKRVYD--GNGLVGFNCVKWAS-PTEFVTGGFGY-----GLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 133 ---------~dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~ 195 (343)
.+..|.+||+.+++ ...+.. .+.. .+.+++|+| +..+++++.++ .|.+||+.. ++...
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~---g~~~~ 298 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEK-FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET---GRFVR 298 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTC-EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT---CCEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCce-eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC---Cceee
Confidence 45779999999874 444332 2333 689999999 77788877775 999999987 53444
Q ss_pred EEecccCCCCCcccCeEEEEEcC--CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE-EEEee
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHP--SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-VQYDC 272 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p--~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~p 272 (343)
.+......... ..+..++|+| ++. ++++++.||.+++|++.........+ ..|...+.. ++|+|
T Consensus 299 ~~~~~~~~~~~--~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l----------~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 299 TLFVETDKHYV--EPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQV----------TKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEEECSSCC--CCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEEC----------CCSSSCEEEEEEECT
T ss_pred EEEEccCCCeE--CccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEec----------CCCCeEEEeeeEEcC
Confidence 43321110000 1246789999 886 66788889999999886323333333 345667776 79999
Q ss_pred cCCCCcCCCCCccceEEEecCC----eEEEEecCCCcccccccccccceeeecCCCCCeeEEccCC----ceEEEEe
Q 019258 273 HTKSSNISSSRVLPAMFCSEDG----ILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEW----ESIAIVS 341 (343)
Q Consensus 273 ~~~~~~~~~~~~~~l~s~s~dg----~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~----~~i~~~~ 341 (343)
++.. .+++++.++ .|+.|+........+.....+.+++++| +|++++.+.++ ..|++|+
T Consensus 366 dg~~---------l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 366 KGTR---------LYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp TSSE---------EEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCE---------EEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEE
Confidence 9874 344555555 6778876544344445556788999999 56777765433 4588886
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=156.74 Aligned_cols=268 Identities=9% Similarity=-0.030 Sum_probs=183.0
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEc--cCceeeeeec
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSS--AMQVLLSVDE 109 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~--~~~~~~~~~~ 109 (343)
++.++++++.|+. +.+||... .+++..+.....+..+.|+ ++++|++++.|+.|++||+ .+.+.+....
T Consensus 148 ~~~~~vs~~~d~~-----V~v~D~~t---~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 148 PNLFSVTLRDAGQ-----IALVDGDS---KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp GGEEEEEEGGGTE-----EEEEETTT---CCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred CCEEEEEEcCCCe-----EEEEECCC---ceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 6788888888864 77999854 2334444433348899999 8899999999999999999 5544433322
Q ss_pred cCCccccCeEEEEec------CCEEEEEe-CCCcEEEEECCCCceEEEEEcCC----------CccceEEEEeCC--CCE
Q 019258 110 NSGFHVGPISGVDLT------GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGN----------GLVGFNCVKWAS--PTE 170 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~------~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~----------~~~~v~~~~~~~--~~~ 170 (343)
+......+.++ ++++++++ .+++|.+||..+.+ +...+..+ ....+.++.+++ ...
T Consensus 220 ----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 220 ----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp ----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred ----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 22345777775 56777777 58999999999875 44443321 122588899998 445
Q ss_pred EEEEeCCCcEEEEEccccCCCCCee--EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVL--QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+++...+++|.+||+.. .+.+. .+. +. ..+..+.|+|+++++++++..+++|.+||+++++....+.
T Consensus 295 ~vs~~~~g~i~vvd~~~---~~~l~~~~i~-~~-------~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKD---IDNLTVTSIG-AA-------PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEEETTTTEEEEEECTT---SSSCEEEEEE-CC-------SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeEEEEEecC---CCcceeEEec-cC-------cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 66777799999999987 44433 332 21 5588899999999888777789999999999865433332
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEecCCC--------c-cccccccccccee
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQGEE--------P-FELLAEPCAINSF 318 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~~~~--------~-~~~~~~~~~i~s~ 318 (343)
.+ ...|.+....+ ++|++.. .+++++ .|++|.+|+...+ . .++......+..+
T Consensus 364 -~g------~~ph~g~g~~~-~~p~~g~---------~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 364 -VG------KTPHPGRGANF-VHPKYGP---------VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp -CS------SSBCCTTCEEE-EETTTEE---------EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred -cC------CCCCCCCCccc-CCCCCcc---------EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence 11 02355443333 5776443 556665 6899999987541 1 1222223567889
Q ss_pred eecCCCCCeeEEcc----C---CceEEEEeC
Q 019258 319 DIDPQNPSDVICSL----E---WESIAIVSR 342 (343)
Q Consensus 319 ~~~~~~~~~l~~~~----~---~~~i~~~~~ 342 (343)
.++| ++++|.+++ + ++.|.+|+.
T Consensus 427 ~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 427 KTHP-KSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp ECCT-TCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred EcCC-CCCcEEEecCCCCCcccCceEEEEEC
Confidence 9999 679999887 1 668999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=167.00 Aligned_cols=281 Identities=12% Similarity=0.043 Sum_probs=178.9
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCC-CC---CeeEEEcc-CCCeEEEEcCC--
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTP-PT---RISSLSTS-HQSLVAASTLS-- 91 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~---~v~~v~~~-~~~~l~~~s~d-- 91 (343)
.++..++|+| +++++++ +.|+ .|++|++..... ...+.+ .. .|.+++|+ ++++|++++.+
T Consensus 17 ~~~~~~~~sp----dg~~~~~-~~dg-----~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 17 IHDPEAKWIS----DTEFIYR-EQKG-----TVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCCCBSS----SSCBCCC-CSSS-----CEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccccEEcC----CCcEEEE-eCCC-----CEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCcc
Confidence 4578899999 7777665 5564 388999955322 222222 22 48999999 88889888764
Q ss_pred -------CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc-c---
Q 019258 92 -------GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL-V--- 158 (343)
Q Consensus 92 -------g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~-~--- 158 (343)
+.+.+|++...+...+. ....|...+..+.|+ |+.++.++. +.|.+||+.++. ...+...+.. .
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLD-PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGVIYN 160 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECC-CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTTEEE
T ss_pred ceeecceeeEEEEECCCCceEecc-CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCceEC
Confidence 78889999865542222 222455568888998 888888886 789999998874 4444443221 0
Q ss_pred -------------ceEEEEeCC-CCEEEEEeCCC----------------------------------cEEEEEccccCC
Q 019258 159 -------------GFNCVKWAS-PTEFVTGGFGY----------------------------------GLQWWDLRRAGS 190 (343)
Q Consensus 159 -------------~v~~~~~~~-~~~l~t~~~d~----------------------------------~i~iwd~~~~~~ 190 (343)
.+.+++|+| ++.|++++.|+ .|++||+..
T Consensus 161 g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--- 237 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG--- 237 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS---
T ss_pred cccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC---
Confidence 237899999 77888887653 789999977
Q ss_pred CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec----CCcEEEEEccCCceeeeeecCCCCcccccCCccccEE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS----SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVW 266 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 266 (343)
++....+..+.... .+...+..++|+|++..+ ++... +..|++||+.+++....+. ..+...+.
T Consensus 238 ~~~~~~l~~~~~~~-~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------~~~~~~~~ 305 (723)
T 1xfd_A 238 PTHDLEMMPPDDPR-MREYYITMVKWATSTKVA-VTWLNRAQNVSILTLCDATTGVCTKKHE----------DESEAWLH 305 (723)
T ss_dssp SCCCEECCCCCCGG-GSSEEEEEEEESSSSEEE-EEEEETTSCEEEEEEEETTTCCEEEEEE----------EECSSCCC
T ss_pred CceeEEeeCCccCC-CccceeEEEEEeCCCeEE-EEEEcCCCCeEEEEEEeCCCCcceEEEE----------eccCCEEe
Confidence 44444444321000 001568999999998754 44432 3579999998765433322 12333333
Q ss_pred ----EEEEeecCCCCcCCCCCccceEE--EecCC------eEEEEe-cC-CC---cccccccccccce-eeecCCCCCee
Q 019258 267 ----EVQYDCHTKSSNISSSRVLPAMF--CSEDG------ILAVVE-QG-EE---PFELLAEPCAINS-FDIDPQNPSDV 328 (343)
Q Consensus 267 ----~v~~~p~~~~~~~~~~~~~~l~s--~s~dg------~i~~~~-~~-~~---~~~~~~~~~~i~s-~~~~~~~~~~l 328 (343)
.++|+|++. .|+. ...|| .|++|+ .. .. ...+......+.+ +.|+| +|+.|
T Consensus 306 ~~~~~~~~spdg~----------~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l 374 (723)
T 1xfd_A 306 RQNEEPVFSKDGR----------KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKI 374 (723)
T ss_dssp CCCCCCEECTTSC----------SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEE
T ss_pred ccCCCceEcCCCC----------eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEE
Confidence 789999988 4553 45667 578888 33 33 3333323334444 68998 56777
Q ss_pred EE-ccCC--ceEEEEe
Q 019258 329 IC-SLEW--ESIAIVS 341 (343)
Q Consensus 329 ~~-~~~~--~~i~~~~ 341 (343)
+. +.++ +.+++|.
T Consensus 375 ~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEEESSSCTTCCEEEE
T ss_pred EEEEcCCCCcceEEEE
Confidence 54 4444 5666664
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-18 Score=155.85 Aligned_cols=204 Identities=17% Similarity=0.100 Sum_probs=139.4
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCce----------eee-eec-cCCccccCeEEEEec--CCEEE----EEe
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQV----------LLS-VDE-NSGFHVGPISGVDLT--GSECV----SVG 132 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~----------~~~-~~~-~~~~h~~~v~~~~~~--~~~~~----s~s 132 (343)
..++.++++ ...++++++.+| +++|+..... .+. ... ....|.+.|.+++|+ ++.++ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 357888888 778899998888 8998764110 000 000 001245679999999 88888 788
Q ss_pred CCCcEEEEECCCC--------ce--EEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 133 EDGRVNLVSVIGG--------GE--FKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 133 ~dg~v~~wd~~~~--------~~--~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
.|++|++||+.+. +. ....+..|.. .|.+++|+| +..|++++.|++|++||++. +..+.....+
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~---~~~~~~~~~~ 191 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG-MVIDMKWNPTVPSMVAVCLADGSIAVLQVTE---TVKVCATLPS 191 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG-SEEEEEECSSCTTEEEEEETTSCEEEEEESS---SEEEEEEECG
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCC-ceEEEEECCCCCCEEEEEECCCeEEEEEcCC---CcceeeccCC
Confidence 9999999998653 11 1233344554 899999999 57899999999999999988 4444344443
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
. ..|.+++|+|++.. +++|+.||+|++||++ ......+.. +.. ....|...|.+++|+++...
T Consensus 192 ~-------~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~-~~~---~~~~~~~~v~~v~w~~~~~~---- 254 (434)
T 2oit_A 192 T-------VAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPC-PPF---YESDHPVRVLDVLWIGTYVF---- 254 (434)
T ss_dssp G-------GCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECC-CTT---CCTTSCEEEEEEEEEETTEE----
T ss_pred C-------CceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccC-Ccc---cCCCCceeEEEEEEecCceE----
Confidence 3 77999999999764 5789999999999998 232222211 100 00134558999999987653
Q ss_pred CCCccceEEEecCCe------EEEEecC
Q 019258 281 SSRVLPAMFCSEDGI------LAVVEQG 302 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~------i~~~~~~ 302 (343)
.++.++.||. +++|+..
T Consensus 255 -----l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 255 -----AIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp -----EEEEEETTCCSSSCCEEEEEECC
T ss_pred -----EEEEccCCCccCCCCceEEEEec
Confidence 3334555543 7788754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-17 Score=160.35 Aligned_cols=277 Identities=11% Similarity=0.024 Sum_probs=185.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.|..++|+| ++++|++++. + .|++|++.............+.+.+.+++|+ +++.|+.++ ++.|++|+
T Consensus 110 ~v~~~~~Sp----Dg~~l~~~~~-~-----~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 110 GIVDYQWSP----DAQRLLFPLG-G-----ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp ESCCCEECT----TSSEEEEEET-T-----EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred CcceeEECC----CCCEEEEEeC-C-----cEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEe
Confidence 488999999 8999998875 2 5889999654111223334566789999999 888888776 56899999
Q ss_pred ccCceeeeeeccCCcccc----------------CeEEEEec--CCEEEEEeCCC-------------------------
Q 019258 99 SAMQVLLSVDENSGFHVG----------------PISGVDLT--GSECVSVGEDG------------------------- 135 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~----------------~v~~~~~~--~~~~~s~s~dg------------------------- 135 (343)
+...+...+.. .+.. .+.++.|+ ++.|++++.|+
T Consensus 179 ~~~g~~~~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 179 LASGRQMQLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp TTTTEEEECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred cCCCCEEEecc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 98655443322 1222 24778898 88888887765
Q ss_pred --------cEEEEECCC-CceEEEEEcC--CCccceEEEEeCC-CCEEEEEeC-----CCcEEEEEccccCCCCCeeEEe
Q 019258 136 --------RVNLVSVIG-GGEFKRVYDG--NGLVGFNCVKWAS-PTEFVTGGF-----GYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 136 --------~v~~wd~~~-~~~~~~~~~~--~~~~~v~~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
.|.+||+.+ ++ ...+... +.. .+..++| | +..|+.++. +..|.+||+.. ++....+.
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~ 329 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDI-YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---NQQRVLAH 329 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCC-CEEECCCSCSSE-EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---CCEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCCc-eEEecCCCCcce-EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---CceEEEEE
Confidence 788999988 74 4444322 333 6899999 9 777776654 67899999988 55444443
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEE-EEeecCCCC
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEV-QYDCHTKSS 277 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~p~~~~~ 277 (343)
.+.. .-. ..+..++|+|++. ++++++.||.+.+|.+..... ...+ ..|...+..+ .|+|++..
T Consensus 330 ~~~~-~~~--~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l----------~~~~~~v~~~~~~s~dg~~- 393 (741)
T 2ecf_A 330 ETSP-TWV--PLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAAL----------THGNWSVDELLAVDEKAGL- 393 (741)
T ss_dssp EECS-SCC--CCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEES----------CCSSSCEEEEEEEETTTTE-
T ss_pred cCCC-CcC--CcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeee----------eecceEEEeEeEEeCCCCE-
Confidence 3321 000 1356889999987 777888999888887653222 3333 4466778887 59999874
Q ss_pred cCCCCCccceEEEecCC--eEEEEecC--CCcccccccccccceeeecCCCCCeeEEccCC----ceEEEEe
Q 019258 278 NISSSRVLPAMFCSEDG--ILAVVEQG--EEPFELLAEPCAINSFDIDPQNPSDVICSLEW----ESIAIVS 341 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg--~i~~~~~~--~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~----~~i~~~~ 341 (343)
.+++++.++ .+++|+.. ......+.....+.+++++| +|++|+....+ ..+++++
T Consensus 394 --------l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 394 --------AYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNNSTPPQIELFR 456 (741)
T ss_dssp --------EEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEE
T ss_pred --------EEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECC-CCCEEEEEecCCCCCCeEEEEE
Confidence 345566666 77777643 22223333355678999999 56777665433 3566654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=142.01 Aligned_cols=217 Identities=11% Similarity=0.007 Sum_probs=153.8
Q ss_pred EcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCC-CceEEEEEcCCCccceEEEE
Q 019258 88 STLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIG-GGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 164 (343)
++.++.|++|++...+...+. .|.+.|.++.|+ ++.+++++ ++.|.+||+.+ ++ ...+...+....+.+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW----QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHG 91 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE----EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCE
T ss_pred CCcceeEEEEeCCCCceeeec----cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceE
Confidence 456899999999866544333 377899999999 77788776 78999999998 74 55555445333688999
Q ss_pred eCC-CCEEEEEe--CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 165 WAS-PTEFVTGG--FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 165 ~~~-~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
|+| +..+++++ .++..++|.+.. .......+... ..+..++|+|++..++++++.|+.+.+|+++..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~--------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPS--TGGTPRLMTKN--------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEET--TCCCCEECCSS--------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEEC--CCCceEEeecC--------CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 999 77888888 345677776654 22334444322 348899999999888778889999999997543
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEecC---CCcccccccccccce
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQG---EEPFELLAEPCAINS 317 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~~---~~~~~~~~~~~~i~s 317 (343)
....... ..|...+..+.|+|++. .++.++ .|+.+.+|+.. .....+......+.+
T Consensus 162 ~~~~~~~----------~~~~~~~~~~~~s~dg~----------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 162 SGVETRL----------THGEGRNDGPDYSPDGR----------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF 221 (297)
T ss_dssp TCCEEEC----------CCSSSCEEEEEECTTSS----------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred CCcceEc----------ccCCCccccceECCCCC----------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence 3322333 34677899999999987 455554 58887777643 223333334567889
Q ss_pred eeecCCCCCeeEEccCC-----------ceEEEEe
Q 019258 318 FDIDPQNPSDVICSLEW-----------ESIAIVS 341 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~-----------~~i~~~~ 341 (343)
+.|+| +|++|+.++.+ ..|++|+
T Consensus 222 ~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 222 PHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred eEECC-CCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 99999 56888777654 4588876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=145.88 Aligned_cols=260 Identities=13% Similarity=0.061 Sum_probs=175.0
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC---CeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeec
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT---RISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~---~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~ 109 (343)
+++++++.++. |++||+... +.+..+.... .+..++|+ +++.+ +++..++.|.+||+...+.+....
T Consensus 2 ~~~v~~~~~~~-----v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDK-----LVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTE-----EEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCe-----EEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 46888888864 779998542 2233444444 58899999 66555 556668999999998655443332
Q ss_pred cCC--ccccCeEEEEec--CCEEEEEe------------CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 110 NSG--FHVGPISGVDLT--GSECVSVG------------EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 110 ~~~--~h~~~v~~~~~~--~~~~~s~s------------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
... .|...+.++.|+ ++.+++++ .++.|.+||+.+++ ....+.... .+.++.|+| ++.++
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPR--QITMLAWARDGSKLY 150 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCS--SCCCEEECTTSSCEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeCCC--CcceeEECCCCCEEE
Confidence 210 122356678887 77787775 67999999998874 444444333 478889999 66566
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC---------------------
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--------------------- 231 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--------------------- 231 (343)
++ ++.|.+||+.. ++....+..... ...+.|+|++..+++++..++
T Consensus 151 ~~--~~~i~~~d~~~---~~~~~~~~~~~~--------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 151 GL--GRDLHVMDPEA---GTLVEDKPIQSW--------EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EE--SSSEEEEETTT---TEEEEEECSTTT--------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred Ee--CCeEEEEECCC---CcEeeeeecccc--------CCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 66 68999999987 555544443220 112267888876655444444
Q ss_pred --cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccc
Q 019258 232 --TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFEL 308 (343)
Q Consensus 232 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~ 308 (343)
.|.+||+++.+...... ..+...+..++|+|++. .++++ ++.|++|+.... ....
T Consensus 218 ~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~----------~l~~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREV----------RIMDVFYFSTAVNPAKT----------RAFGA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECTTSS----------EEEEE--ESEEEEEETTTTEEEEE
T ss_pred ccceEEEeCCCCCceEeec----------CCCCCceeeEEECCCCC----------EEEEe--CCeEEEEECCCCcCcce
Confidence 46899998765431111 23556788999999987 56666 799999997543 2233
Q ss_pred cccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 309 LAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 309 ~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
......+.++.++| +|++|++++.++.|++|+
T Consensus 276 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 276 VPLPHSYYSVNVST-DGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EECSSCCCEEEECT-TSCEEEEESBSSEEEEEE
T ss_pred ecCCCceeeEEECC-CCCEEEEEcCCCcEEEEE
Confidence 33345688999999 568888888889999986
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-16 Score=140.59 Aligned_cols=279 Identities=11% Similarity=0.084 Sum_probs=168.9
Q ss_pred eEEEEeecCC-CCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEEEEEccCceeeeeec
Q 019258 36 LAVLAIYDTD-ADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 36 ~l~t~s~D~~-~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~ 109 (343)
.+..|++-.. .+ .+.+|.+... .....+....+...+..++|+ ++. |++++. ++.|.+|++.......+..
T Consensus 4 ~~~vg~y~~~~~~--~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~ 80 (347)
T 3hfq_A 4 RILFGTYTKKTSQ--GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT 80 (347)
T ss_dssp EEEEEECCSSSCC--EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEeccCCCCC--CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee
Confidence 4556655332 22 2455555321 112222334455678889999 666 555544 6899999996443222221
Q ss_pred cCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCC-Cc-eEEEEEcCCC--------ccceEEEEeCC-CCEEEEEe
Q 019258 110 NSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIG-GG-EFKRVYDGNG--------LVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~-~~-~~~~~~~~~~--------~~~v~~~~~~~-~~~l~t~~ 175 (343)
...+...+..++++ ++.+++++ .++.|.+||+.. +. .......... ...+.+++|+| +..+++..
T Consensus 81 -~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 81 -VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp -EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred -eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 11355667888888 77787777 789999999963 21 1122221111 11488899999 55555556
Q ss_pred CCCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC--Cce-eeeeec
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW--QQQ-SIVLSG 249 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~--~~~-~~~~~~ 249 (343)
.++.|.+||+.. .+. +.. +....+ .....++|+|++..+++++..++.|.+||+.. +.. ......
T Consensus 160 ~~~~v~~~~~~~--~g~-~~~~~~~~~~~g------~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 160 GSDKVYVYNVSD--AGQ-LSEQSVLTMEAG------FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp TTTEEEEEEECT--TSC-EEEEEEEECCTT------CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEEECC--CCc-EEEeeeEEcCCC------CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 688999999984 132 222 222211 34778999999988888788899999999874 221 111110
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccc---c-ccccceeeecCCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLA---E-PCAINSFDIDPQN 324 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~---~-~~~i~s~~~~~~~ 324 (343)
.... .......+..++|+|++.. .+++...++.|.+|+.... ...... . ...+..++++| +
T Consensus 231 ~~~~----~~~~~~~~~~i~~spdG~~---------l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-d 296 (347)
T 3hfq_A 231 TIPA----DYTAHNGAAAIRLSHDGHF---------LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-T 296 (347)
T ss_dssp SSCT----TCCSCCEEEEEEECTTSCE---------EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-T
T ss_pred ecCC----CCCCCCcceeEEECCCCCE---------EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-C
Confidence 0000 0001245889999999884 3466677899999986521 112111 1 23578999999 5
Q ss_pred CCeeEEcc-CCceEEEEe
Q 019258 325 PSDVICSL-EWESIAIVS 341 (343)
Q Consensus 325 ~~~l~~~~-~~~~i~~~~ 341 (343)
|++|++++ +++.|.+|.
T Consensus 297 g~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCcEEEEE
Confidence 67776665 458899884
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-17 Score=153.12 Aligned_cols=264 Identities=14% Similarity=0.056 Sum_probs=174.8
Q ss_pred cceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEccCCCeEEEEcC---CCc
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTSHQSLVAASTL---SGS 93 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~s~---dg~ 93 (343)
..|..++++| +++.||.++. |+. +++|++... .+.....+. ..+.++.|+.+.++++++. +..
T Consensus 22 ~~~~~~~~~~----DG~~la~~s~~~g~-----~~lw~~~~g---~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 22 VEKYSLQGVV----DGDKLLVVGFSEGS-----VNAYLYDGG---ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ 89 (582)
T ss_dssp SCEEEEEEEE----TTTEEEEEEEETTE-----EEEEEEETT---EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred cchheeecCC----CCCeEEEEEccCCc-----eeEEEEcCC---CcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence 4699999999 9999999887 654 668887432 222233444 5799999993366666654 455
Q ss_pred EEEEEccC--c-eeeeeeccCCccccCeEEEEecCC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 94 LHVLSSAM--Q-VLLSVDENSGFHVGPISGVDLTGS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 94 v~v~~~~~--~-~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.++|.+.. . ....+.. .+...+.+++++++ .+++.+.++.+.+||+.+++ ...+...+. .+++|+| +
T Consensus 90 ~~l~~~~~~~~g~~~~l~~---~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~~~l~~~~~----~~~~~spDG 161 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQRLEA---VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELARLPG----FGFVSDIRG 161 (582)
T ss_dssp EEEEEEETTSTTCCEECTT---SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEEESS----CEEEEEEET
T ss_pred eEEEEEeccCCCccccccC---CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-EEEeecCCC----ceEEECCCC
Confidence 67766542 2 2222211 11112445555543 34444444556699999884 555544332 6888999 8
Q ss_pred CEEEEEeCC----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCc
Q 019258 169 TEFVTGGFG----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQ 242 (343)
Q Consensus 169 ~~l~t~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~ 242 (343)
..+++++.+ +.|++||+.. ++ ...+..+. +.+..++|+|+|..++ ++..+| .|++||+.+++
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~---g~-~~~l~~~~-------~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSS---GG-LRVFDSGE-------GSFSSASISPGMKVTA-GLETAREARLVTVDPRDGS 229 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTT---CC-CEEECCSS-------CEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCC---CC-ceEeecCC-------CccccceECCCCCEEE-EccCCCeeEEEEEcCCCCc
Confidence 888878777 7899999977 44 34555443 6689999999998664 777888 89999998755
Q ss_pred eeeeeecCCCCcccccCCccccEEEEE--------EeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccccc
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQ--------YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCA 314 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~--------~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~ 314 (343)
.. .. ..|...+..+. |+|++ . .+++++.||++++|+. .+... .....
T Consensus 230 ~~--~~----------~~~~~~~~~~~~~~~~~~~~spdg-~---------~~~~~~~~g~~~l~~~-g~~~~--~~~~~ 284 (582)
T 3o4h_A 230 VE--DL----------ELPSKDFSSYRPTAITWLGYLPDG-R---------LAVVARREGRSAVFID-GERVE--APQGN 284 (582)
T ss_dssp EE--EC----------CCSCSHHHHHCCSEEEEEEECTTS-C---------EEEEEEETTEEEEEET-TEEEC--CCSSE
T ss_pred EE--Ec----------cCCCcChhhhhhccccceeEcCCC-c---------EEEEEEcCCcEEEEEE-CCeec--cCCCc
Confidence 43 43 44666666666 99999 4 8999999999999998 32222 12246
Q ss_pred cceeeecCCCCCeeEEccCCc---eEEEEe
Q 019258 315 INSFDIDPQNPSDVICSLEWE---SIAIVS 341 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~---~i~~~~ 341 (343)
+.+++++ ++..+++++.+. .+++++
T Consensus 285 v~~~~~s--dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 285 HGRVVLW--RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred eEEEEec--CCEEEEEEcCCCCCCeEEEEc
Confidence 7888888 357777766553 455553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-16 Score=151.54 Aligned_cols=273 Identities=9% Similarity=-0.019 Sum_probs=172.5
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCC----CCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDAD----SPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~----~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|..++|+| ++++|++++.+.... ...+++|++.............+...+..++|+ +++.|+.++. +.|
T Consensus 62 ~v~~~~~Sp----Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 62 RAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp TCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred ccceEEECC----CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 489999999 899999998765432 246889999653321111112334458899999 8888888776 789
Q ss_pred EEEEccCceeeeeeccCCcccc------------------CeEEEEec--CCEEEEEeCCC-------------------
Q 019258 95 HVLSSAMQVLLSVDENSGFHVG------------------PISGVDLT--GSECVSVGEDG------------------- 135 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~--~~~~~s~s~dg------------------- 135 (343)
++|++...+...+... +.. .+.++.|+ ++.|++++.|+
T Consensus 137 ~~~~~~~g~~~~~~~~---~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVST---GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp EEESSSSSCCEEEECC---CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred EEEECCCCceEEEecC---CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 9999986554443321 222 23789998 88888887553
Q ss_pred ---------------cEEEEECCCCceEEEEEcCCC-----ccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCC
Q 019258 136 ---------------RVNLVSVIGGGEFKRVYDGNG-----LVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGS 190 (343)
Q Consensus 136 ---------------~v~~wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~ 190 (343)
.|.+||+.+++....+ ..+. ...+..++|+| +..+++... +..|.+||+..
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~--- 289 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEM-MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT--- 289 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEEC-CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT---
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEe-eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC---
Confidence 7999999887422333 3221 22689999999 555555543 36799999987
Q ss_pred CCCeeEEecccCCCCCcccCe----EEEEEcCCCCeEEEE-EecCC------cEEEEEccCCce---eeeeecCCCCccc
Q 019258 191 GGPVLQFKGNFGSQGKASGMI----HSVDIHPSRKHTCLA-GGSSG------TVFAWDLRWQQQ---SIVLSGVGTGEAV 256 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i----~~v~~~p~~~~~~~s-g~~dg------~v~iwd~~~~~~---~~~~~~~~~~~~~ 256 (343)
++....+..... +.+ ..++|+|++..+++. +..++ .|.+||+..... ...+.
T Consensus 290 g~~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-------- 355 (723)
T 1xfd_A 290 GVCTKKHEDESE------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-------- 355 (723)
T ss_dssp CCEEEEEEEECS------SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--------
T ss_pred CcceEEEEeccC------CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--------
Confidence 554433332211 233 378999999877665 56677 577777322222 22222
Q ss_pred ccCCccccEEE-EEEeecCCCCcCCCCCccceEEEecC---CeEEEEecCCC---cccccc----cccccceeeecCCCC
Q 019258 257 THSLSESEVWE-VQYDCHTKSSNISSSRVLPAMFCSED---GILAVVEQGEE---PFELLA----EPCAINSFDIDPQNP 325 (343)
Q Consensus 257 ~~~~h~~~v~~-v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~---~~~~~~----~~~~i~s~~~~~~~~ 325 (343)
.+...+.. ++|+|++. .|+..+.+ +.+.+|+.... ....+. ....+.+++++| +|
T Consensus 356 ---~~~~~~~~~~~~spdg~----------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp-dg 421 (723)
T 1xfd_A 356 ---SGDWDVTKILAYDEKGN----------KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH-SM 421 (723)
T ss_dssp ---CSSSCEEEEEEEETTTT----------EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT-TS
T ss_pred ---cCCeEEEeeeEEcCCCC----------EEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC-CC
Confidence 12333444 69999988 56555444 67777765321 122222 245688999999 56
Q ss_pred CeeEEcc
Q 019258 326 SDVICSL 332 (343)
Q Consensus 326 ~~l~~~~ 332 (343)
++++...
T Consensus 422 ~~l~~~~ 428 (723)
T 1xfd_A 422 DFFLLKC 428 (723)
T ss_dssp SEEEEEC
T ss_pred CEEEEEc
Confidence 7776543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-16 Score=158.47 Aligned_cols=280 Identities=8% Similarity=-0.048 Sum_probs=192.3
Q ss_pred cccceeeEEec-CCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC-CeeEEEccCCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWL-PPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT-RISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~-p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~l~~~s~dg~v 94 (343)
+...|..++|+ | +++.+++++ ++ .+++|++.... ......+.+ .+..+.|+++..|+.++.++.+
T Consensus 294 ~~~~v~~~~~S~p----dG~~la~~~-~~-----~i~~~~~~~~~---~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l 360 (1045)
T 1k32_A 294 SIPSKFAEDFSPL----DGDLIAFVS-RG-----QAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 360 (1045)
T ss_dssp ECGGGGEEEEEEC----GGGCEEEEE-TT-----EEEEECTTSSB---EEECSCCSCEEEEEECSSSEEEEEEEETTEEE
T ss_pred cccccceeeecCC----CCCEEEEEE-cC-----EEEEEcCCCCc---eEEccCCCcceEEeeeEcCCCeEEEEECCCce
Confidence 34479999999 8 888898887 32 47788885432 122335666 7899999955678888877778
Q ss_pred E-EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 95 H-VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 95 ~-v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
. +|++...+...+. .|...+..+.|+ ++.+++++.++.|++||+.+++ ...+...+.. .+.+++|+| +..
T Consensus 361 ~~~~d~~~~~~~~l~----~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~-~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 361 LGIYDYRTGKAEKFE----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREA-MITDFTISDNSRF 434 (1045)
T ss_dssp EEEEETTTCCEEECC----CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSS-CCCCEEECTTSCE
T ss_pred EEEEECCCCCceEec----CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCC-CccceEECCCCCe
Confidence 7 8888754433222 477789999998 8899999999999999999884 5555545554 688999999 777
Q ss_pred EEEEeCCC----------cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 171 FVTGGFGY----------GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 171 l~t~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++++.++ .|++||+.. ++ +..+..+. ..+..++|+|++..+ +.++.++...+|+...
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~---g~-~~~l~~~~-------~~~~~~~~spdG~~l-~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEG---RK-IFAATTEN-------SHDYAPAFDADSKNL-YYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTT---TE-EEECSCSS-------SBEEEEEECTTSCEE-EEEESCCCCCEECSSS
T ss_pred EEEEecCccccccCCCCCeEEEEECCC---Cc-EEEeeCCC-------cccCCceEcCCCCEE-EEEecccCCcCcchhc
Confidence 88877654 999999977 43 45555443 568889999999765 5677777777787543
Q ss_pred Cce-------eeeee-c--------------------CCC----CcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 241 QQQ-------SIVLS-G--------------------VGT----GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 241 ~~~-------~~~~~-~--------------------~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
... +..+. . ... ........|.+.+..+.++|++. .++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~----------~~~ 572 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI----------LIY 572 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE----------EEE
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe----------EEE
Confidence 211 11000 0 000 00111234667789999999876 455
Q ss_pred E-------------EecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 289 F-------------CSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 289 s-------------~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+ ...++.|+.|+......+.+. ..+.+++++| +|++|+.++++ .|++|+
T Consensus 573 ~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 573 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp ECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--EEEEEEEECT-TSCEEEEEETT-SCEEEE
T ss_pred EecccCcccccccccCCCceEEEEECCCCcEEEee--cCcceEEECC-CCCEEEEEcCC-cEEEEe
Confidence 3 123446888887544433333 5688999999 67888888766 688775
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-15 Score=131.64 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=171.5
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC----CcEEEEEccCc-eeee
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS----GSLHVLSSAMQ-VLLS 106 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d----g~v~v~~~~~~-~~~~ 106 (343)
..++..|++.... .-.|.+|.+... .....+... +...+..++|+ ++++|++++.+ +.|.+|++... ..+.
T Consensus 13 ~~~~~vg~y~~~~-~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGN-SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSS-CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCC-CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 4566778775421 113667776322 222233333 56678889999 78888888875 89999998742 2222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEe-CCCcEEEEECCCCceEE---EEEcCCC---------ccceEEEEeCC-CCEEE
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVG-EDGRVNLVSVIGGGEFK---RVYDGNG---------LVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s-~dg~v~~wd~~~~~~~~---~~~~~~~---------~~~v~~~~~~~-~~~l~ 172 (343)
.......+......+.+.++.+++++ .++.|.+|++....... ....... ...+.+++|+| ++.++
T Consensus 91 ~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred EeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 22111123345666777777666665 68899999997532111 1111111 11358899999 66555
Q ss_pred EEe-CCCcEEEEEccccCCCC----C-ee------EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 173 TGG-FGYGLQWWDLRRAGSGG----P-VL------QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 173 t~~-~d~~i~iwd~~~~~~~~----~-~~------~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+++ .++.|.+|++.. ... . +. ......+ .....++|+|++..+++++..++.|.+||+..
T Consensus 171 ~~~~~~~~v~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 171 ADDLGTDQIHKFNINP--NANADNKEKFLTKGTPEAFKVAPG------SGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEETTTTEEEEEEECT--TCCTTTCCCCEEEEEEEEEECCTT------CCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred EEeCCCCEEEEEEEcC--CCCcccccceeecccccceecCCC------CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 555 489999999876 221 1 21 1221111 44789999999987776666799999999985
Q ss_pred Ccee-eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-c-CCeEEEEecCC--Ccccccc---cc
Q 019258 241 QQQS-IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-E-DGILAVVEQGE--EPFELLA---EP 312 (343)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~-dg~i~~~~~~~--~~~~~~~---~~ 312 (343)
+... ...... ...+......++|+|++. +|+.+. . ++.|.+|+... ....... ..
T Consensus 243 g~~~~~~~~~~-------~~~~~~~~~~i~~spdg~----------~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g 305 (361)
T 3scy_A 243 GMLDEIQTVAA-------DTVNAQGSGDIHLSPDGK----------YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305 (361)
T ss_dssp TEEEEEEEEES-------CSSCCCCEEEEEECTTSS----------EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred CceEEeEEEec-------CCCCCCCcccEEECCCCC----------EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence 4321 111100 023345568999999988 565544 4 58999998742 2222221 13
Q ss_pred cccceeeecCCCCCeeEEcc-CCceEEEEe
Q 019258 313 CAINSFDIDPQNPSDVICSL-EWESIAIVS 341 (343)
Q Consensus 313 ~~i~s~~~~~~~~~~l~~~~-~~~~i~~~~ 341 (343)
..+..++++| +|++|++++ +++.|.+|.
T Consensus 306 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 306 IHPRNFIITP-NGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp SCCCEEEECT-TSCEEEEEETTTTEEEEEE
T ss_pred CCCceEEECC-CCCEEEEEECCCCCEEEEE
Confidence 4678999999 568777776 668888864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=133.90 Aligned_cols=255 Identities=11% Similarity=0.034 Sum_probs=158.7
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEc-CC
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAAST-LS 91 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s-~d 91 (343)
..+...+..++|+| +++ +++++.++..+ .|++|++.... ...+.. ..+...+..++|+ ++++|++++ .+
T Consensus 36 ~~~~~~p~~~a~sp----dg~-l~~~~~~~~~~--~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~ 107 (347)
T 3hfq_A 36 LAATQNPTYLALSA----KDC-LYSVDKEDDEG--GIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK 107 (347)
T ss_dssp EEECSCCCCEEECT----TCE-EEEEEEETTEE--EEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred eeccCCcceEEEcc----CCe-EEEEEecCCCc--eEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence 34456678899999 777 44444421111 47899984322 222222 2345678899999 788777777 68
Q ss_pred CcEEEEEccCc-e--eeeeeccC------CccccCeEEEEec--CCEEEEEeCCCcEEEEECC-CCceEEEE--EcCCCc
Q 019258 92 GSLHVLSSAMQ-V--LLSVDENS------GFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI-GGGEFKRV--YDGNGL 157 (343)
Q Consensus 92 g~v~v~~~~~~-~--~~~~~~~~------~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~-~~~~~~~~--~~~~~~ 157 (343)
+.|.+|++... . .+...... ..+...+.++.|+ ++.+++...++.|.+||+. +++ .... ......
T Consensus 108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~g 186 (347)
T 3hfq_A 108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ-LSEQSVLTMEAG 186 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC-EEEEEEEECCTT
T ss_pred CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc-EEEeeeEEcCCC
Confidence 99999999622 1 12111110 0122348889998 6766666778999999998 442 2221 122222
Q ss_pred cceEEEEeCC-CCEEEE-EeCCCcEEEEEccccCCCCCe---eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 158 VGFNCVKWAS-PTEFVT-GGFGYGLQWWDLRRAGSGGPV---LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t-~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
.....++|+| ++.+++ ...++.|.+|++.. ....+ ..+...... ......+..++|+|+++.+++++..++.
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDT--QTGAFTQLGIVKTIPAD-YTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEET--TTTEEEEEEEEESSCTT-CCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecC--CCCceEEeeeeeecCCC-CCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 2578899999 664444 56689999999874 11222 122211100 0000348899999999888788888999
Q ss_pred EEEEEccCCce--eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEEec
Q 019258 233 VFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVVEQ 301 (343)
Q Consensus 233 v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~~~ 301 (343)
|.+||+..... ..... ..+...+..++|+|++. +|++++ .++.|.+|+.
T Consensus 264 v~v~~~~~~g~~~~~~~~----------~~~~~~~~~~~~spdg~----------~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQI----------STEGDFPRDFDLDPTEA----------FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEECGGGCEEEEEEE----------ECSSSCCCEEEECTTSS----------EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCcEEEeEEE----------ecCCCCcCeEEECCCCC----------EEEEEEcCCCcEEEEEE
Confidence 99999873221 22222 23445678999999988 566665 4589999954
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-15 Score=146.47 Aligned_cols=246 Identities=7% Similarity=-0.008 Sum_probs=164.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC-----CCCCCCCccCCCC-------------CCeeEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-----PASLTPHSQWTPP-------------TRISSL 77 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~-----~~~~~~~~~~~~~-------------~~v~~v 77 (343)
.+...+..++|+| +++.|+.+ .|+ .|++|++.. .... .+...... +.+.++
T Consensus 118 ~~~~~~~~~~~Sp----dG~~la~~-~~~-----~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 118 DTNEETASLDFSP----VGDRVAYV-RNH-----NLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp CCTTCCTTCEECT----TSSEEEEE-ETT-----EEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSE
T ss_pred CCcccccCCcCCC----CCCEEEEE-ECC-----eEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceE
Confidence 3456788999999 89888885 554 488999965 2211 11111111 125899
Q ss_pred Ecc-CCCeEEEEc---------------------------------CCCcEEEEEccCceeeeeeccCCccccCeEEEEe
Q 019258 78 STS-HQSLVAAST---------------------------------LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL 123 (343)
Q Consensus 78 ~~~-~~~~l~~~s---------------------------------~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~ 123 (343)
.|+ +++.|++++ .+..|++||+...+...+.. ...|...+.++.|
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKEKFLTNLSW 265 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-CSCTTCEEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-CCCCceeEeeEEE
Confidence 999 888898887 44679999998655433322 1246678999999
Q ss_pred c--CCEEEEEeCCC-----cEEEEECCCCceEEEEEcCCCc---cceEEEEeCC--CC-EEEEEeCCCcEEEEEccccCC
Q 019258 124 T--GSECVSVGEDG-----RVNLVSVIGGGEFKRVYDGNGL---VGFNCVKWAS--PT-EFVTGGFGYGLQWWDLRRAGS 190 (343)
Q Consensus 124 ~--~~~~~s~s~dg-----~v~~wd~~~~~~~~~~~~~~~~---~~v~~~~~~~--~~-~l~t~~~d~~i~iwd~~~~~~ 190 (343)
+ ++.+++++.++ .|.+||+.+++....+...... ..+..+.|+| .. .++++..|+.+++|++.. .
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--~ 343 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT--T 343 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET--T
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC--C
Confidence 8 78888887775 8999999987334443322111 1246778987 54 555666789999999874 2
Q ss_pred CCCeeEEecccCCCCCcccCeEE-EEEcCCCCeEEEEEecCC----cEEEEEccCCceeeeeecCCCCcccccCCccccE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHS-VDIHPSRKHTCLAGGSSG----TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~-v~~~p~~~~~~~sg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v 265 (343)
+..+..+..+. ..+.. ++|+|++..++++++.++ .|..||+..+. ... + .|...+
T Consensus 344 ~~~~~~l~~~~-------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~-l-----------~~~~~~ 403 (706)
T 2z3z_A 344 GRLIRQVTKGE-------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD-L-----------TPESGM 403 (706)
T ss_dssp SCEEEECCCSS-------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE-S-----------CCSSSE
T ss_pred CCEEEecCCCC-------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee-c-----------cCCCce
Confidence 45555555432 45766 799999988877777776 67777776533 222 2 256678
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecC---CeEEEEecCCC
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSED---GILAVVEQGEE 304 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~~~~~~~ 304 (343)
..++|+|++.. .+++++.+ +.|++|+....
T Consensus 404 ~~~~~spdg~~---------l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 404 HRTQLSPDGSA---------IIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEECTTSSE---------EEEEEECSSCSCEEEEEESSSC
T ss_pred EEEEECCCCCE---------EEEEecCCCCCcEEEEEECCCC
Confidence 99999999884 33444444 56999987543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-15 Score=129.61 Aligned_cols=227 Identities=8% Similarity=-0.046 Sum_probs=153.1
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
...+++.+.++.|.+||....+...... .+.... .+.++ ++.+++++ .++.|.+||+.+++........+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~- 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQIT---LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS- 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEE---CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEE---ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-
Confidence 4457788889999999998665544433 234445 88887 66565555 4899999999987542444444443
Q ss_pred ceEEEEeCC-CCEEEEEeCCC---cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc-E
Q 019258 159 GFNCVKWAS-PTEFVTGGFGY---GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT-V 233 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~-v 233 (343)
...+++|+| ++.++++..++ .|.+||+.. ++.+..+... ....+++|+|++..+++++..++. |
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~--------~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIPIP--------YDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEECC--------TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEECC--------CCccceEECCCCCEEEEEecCCCceE
Confidence 344499999 66677444442 899999987 5655555432 347899999999888888888788 9
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-c---cccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-P---FELL 309 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~---~~~~ 309 (343)
.+|++........... . ..........++|+|++.. .++++..++.|++|+.... . ...+
T Consensus 154 ~~~~~~~~g~~~~~~~-~------~~~~~~~~~~~~~spdg~~---------l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQ-E------FISGGTRPFNITFTPDGNF---------AFVANLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp EEEEECTTCCEEEEEE-E------EECSSSSEEEEEECTTSSE---------EEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred EEEEECCCCcEeecCC-c------cccCCCCccceEECCCCCE---------EEEEeCCCCeEEEEECCCCcccceeeec
Confidence 9999875332211100 0 0112345789999999874 4556667899999997532 2 2333
Q ss_pred ccccccceeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 310 AEPCAINSFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 310 ~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
.....+..+.++| +|++|+.+ ..++.|++|+
T Consensus 218 ~~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 218 GTNNLPGTIVVSR-DGSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp ECSSCCCCEEECT-TSSEEEEECSSEEEEEEEE
T ss_pred cCCCCCceEEECC-CCCEEEEEEcCCCEEEEEE
Confidence 3456678999999 56755544 4567888886
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=155.44 Aligned_cols=285 Identities=8% Similarity=-0.015 Sum_probs=189.7
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCC-CCCCceeeeeCCCCCCCCCCccCCCCCCe-------eEEEcc-CCCeEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTD-ADSPSLETHSISLPASLTPHSQWTPPTRI-------SSLSTS-HQSLVA 86 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~-~~~~~l~~w~~~~~~~~~~~~~~~~~~~v-------~~v~~~-~~~~l~ 86 (343)
.|...|..++|+| ++++||.++.+.. .+...|++|++.... ......|.+.+ .+++|+ ++.+++
T Consensus 50 ~~~~~v~~~~~SP----DG~~la~~s~~~~~~~~~~i~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 50 SNLGVINNARFFP----DGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CSSSEEEEEEECT----TSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred eCCCcccCeEECC----CCCEEEEEEeeccCCCCCeEEEEECCCCC---eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 4677899999999 9999999887621 122358899986532 22233456666 899999 777777
Q ss_pred EEcCC----C--cEEEEEccCceeeeeec----------------------------------------------cCCcc
Q 019258 87 ASTLS----G--SLHVLSSAMQVLLSVDE----------------------------------------------NSGFH 114 (343)
Q Consensus 87 ~~s~d----g--~v~v~~~~~~~~~~~~~----------------------------------------------~~~~h 114 (343)
+++.+ + .|.+|++...+...+.. ....|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77654 3 46666665332211100 00236
Q ss_pred ccCeEEEEec-CCEEEEEeCCCcEEEEECCC-CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCC
Q 019258 115 VGPISGVDLT-GSECVSVGEDGRVNLVSVIG-GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG 191 (343)
Q Consensus 115 ~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~ 191 (343)
.+.+.++.|+ ...+++++.|+++++|+++. +..... +..+. .+...+|+| +..++.+ .++.|.+||+..
T Consensus 203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~-l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~---- 274 (1045)
T 1k32_A 203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDT---- 274 (1045)
T ss_dssp SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTT----
T ss_pred CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceE-ecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCc----
Confidence 6778888888 44455777889999998754 222333 33343 356678888 6666666 599999999833
Q ss_pred CCeeEEecccCCCC----CcccCeEEEEEc-CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccc-cE
Q 019258 192 GPVLQFKGNFGSQG----KASGMIHSVDIH-PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES-EV 265 (343)
Q Consensus 192 ~~~~~~~~~~~~~~----~~~~~i~~v~~~-p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~v 265 (343)
..+..+........ .+...+.+++|+ |++..++ .++ ++.|.+||+.... ... . ..|.. .+
T Consensus 275 ~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la-~~~-~~~i~~~~~~~~~-~~~-~----------~~~~~~~~ 340 (1045)
T 1k32_A 275 EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA-FVS-RGQAFIQDVSGTY-VLK-V----------PEPLRIRY 340 (1045)
T ss_dssp CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE-EEE-TTEEEEECTTSSB-EEE-C----------SCCSCEEE
T ss_pred eEeeeeccCcccccccccccccccceeeecCCCCCEEE-EEE-cCEEEEEcCCCCc-eEE-c----------cCCCcceE
Confidence 44444433110000 011358899999 9987664 444 8899999987643 222 2 34566 89
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEE-EEecCCC-cccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILA-VVEQGEE-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~-~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
..++|+ ++. .+++++.++.|+ +|+.... ...+..+...+.++.|+| +|++|++++.++.|++|+
T Consensus 341 ~~~~~s-dg~----------~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 341 VRRGGD-TKV----------AFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEECSS-SEE----------EEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred EeeeEc-CCC----------eEEEEECCCceEEEEECCCCCceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEE
Confidence 999999 776 688888888999 9987543 233333346789999999 679999999999999986
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=128.44 Aligned_cols=240 Identities=10% Similarity=-0.000 Sum_probs=160.2
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcC-------CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcE
Q 019258 69 TPPTRISSLSTS-HQSLVAASTL-------SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRV 137 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~-------dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v 137 (343)
+....+..++|+ +++.+++++. ++.|.+||....+....... ...+.++.++ ++ .+++...++.|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecCCCEE
Confidence 344567889999 7777777774 56899999886554433321 2235667776 66 45566678999
Q ss_pred EEEECCCCceEEEEEcCCCcc--------ceEEEEeCC-CCEEEEEe--CCCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 138 NLVSVIGGGEFKRVYDGNGLV--------GFNCVKWAS-PTEFVTGG--FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~--------~v~~~~~~~-~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
.+||..+++ ....+..+... .+.++.|+| ++.++.++ .++.|.+||+.. ++.+..+....
T Consensus 114 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~----- 184 (353)
T 3vgz_A 114 TAIDAKTGE-VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQNTG----- 184 (353)
T ss_dssp EEEETTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECCCC-----
T ss_pred EEEeCCCCe-eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecCCC-----
Confidence 999999885 44433333211 268899999 66666655 488999999987 55555554232
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..+.+++|+|++..+ ++++.++.|.+||+.+.+....+.... ..+...+..++|+|++.. .
T Consensus 185 --~~~~~~~~s~dg~~l-~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~---------l 245 (353)
T 3vgz_A 185 --KMSTGLALDSEGKRL-YTTNADGELITIDTADNKILSRKKLLD-------DGKEHFFINISLDTARQR---------A 245 (353)
T ss_dssp --TTCCCCEEETTTTEE-EEECTTSEEEEEETTTTEEEEEEECCC-------SSSCCCEEEEEEETTTTE---------E
T ss_pred --CccceEEECCCCCEE-EEEcCCCeEEEEECCCCeEEEEEEcCC-------CCCCcccceEEECCCCCE---------E
Confidence 447889999998765 456779999999998865444433111 235567889999999884 3
Q ss_pred eEEEecCCeEEEEecCCC-cccccccccccceeeecCCCCCee-EEccCCceEEEEeC
Q 019258 287 AMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDV-ICSLEWESIAIVSR 342 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l-~~~~~~~~i~~~~~ 342 (343)
+++...++.|++|+.... .......+.+ ..+.++| +++++ ++...++.|.+|+.
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~-dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNP-ARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECC-CCCEEEEEECCCCeEEEEEC
Confidence 444455699999997533 2222222333 5688998 45644 44446789999863
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-14 Score=126.71 Aligned_cols=251 Identities=10% Similarity=0.021 Sum_probs=156.8
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCC-CCCCeeEEEccCCCeEEEEc-CCCc
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWT-PPTRISSLSTSHQSLVAAST-LSGS 93 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s-~dg~ 93 (343)
+...+..++|+| ++++|++++.++. +.-.+.+|++... .....+.... +......+++ +++.|++++ .++.
T Consensus 48 ~~~~p~~l~~sp----dg~~l~~~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 48 EVANPSYLIPSA----DGKFVYSVNEFSK-DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGS 121 (361)
T ss_dssp ECSCCCSEEECT----TSSEEEEEECCSS-TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTE
T ss_pred cCCCCceEEECC----CCCEEEEEEccCC-CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCE
Confidence 566778899999 8898998887631 1114678887543 2222233322 3445667777 677776665 5889
Q ss_pred EEEEEccCceeeeee----cc-------CCccccCeEEEEec--CCEEEE-EeCCCcEEEEECCCCce------E-----
Q 019258 94 LHVLSSAMQVLLSVD----EN-------SGFHVGPISGVDLT--GSECVS-VGEDGRVNLVSVIGGGE------F----- 148 (343)
Q Consensus 94 v~v~~~~~~~~~~~~----~~-------~~~h~~~v~~~~~~--~~~~~s-~s~dg~v~~wd~~~~~~------~----- 148 (343)
|.+|++.....+... .. ...+...+.++.|+ ++.++. ...++.|.+|+++.... +
T Consensus 122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 999999733222111 00 11123346889998 665554 44689999999875421 1
Q ss_pred -EEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 149 -KRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 149 -~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
......... ....++|+| ++.+++++ .++.|.+||+.. +.. +..+....... .....++|+|+++.+
T Consensus 202 ~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~~~~~~~----~~~~~i~~spdg~~l 273 (361)
T 3scy_A 202 PEAFKVAPGS-GPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVAADTVNA----QGSGDIHLSPDGKYL 273 (361)
T ss_dssp EEEEECCTTC-CEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEEEEESCSSCC----CCEEEEEECTTSSEE
T ss_pred ccceecCCCC-CCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeEEEecCCCCC----CCcccEEECCCCCEE
Confidence 122222232 688999999 66666666 599999999976 322 22232222111 346899999999887
Q ss_pred EEEEec-CCcEEEEEccC--Cce-eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEE
Q 019258 224 CLAGGS-SGTVFAWDLRW--QQQ-SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAV 298 (343)
Q Consensus 224 ~~sg~~-dg~v~iwd~~~--~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~ 298 (343)
+++... ++.|.+|++.. +.. ..... .. ...+..++|+|++. +|++++ .++.|.+
T Consensus 274 ~v~~~~~~~~i~v~~~~~~~g~~~~~~~~----------~~-g~~~~~~~~spdg~----------~l~~~~~~~~~v~v 332 (361)
T 3scy_A 274 YASNRLKADGVAIFKVDETNGTLTKVGYQ----------LT-GIHPRNFIITPNGK----------YLLVACRDTNVIQI 332 (361)
T ss_dssp EEEECSSSCEEEEEEECTTTCCEEEEEEE----------EC-SSCCCEEEECTTSC----------EEEEEETTTTEEEE
T ss_pred EEECCCCCCEEEEEEEcCCCCcEEEeeEe----------cC-CCCCceEEECCCCC----------EEEEEECCCCCEEE
Confidence 666666 68999999962 221 12222 11 34677899999988 566665 6788988
Q ss_pred EecC
Q 019258 299 VEQG 302 (343)
Q Consensus 299 ~~~~ 302 (343)
|+.+
T Consensus 333 ~~~d 336 (361)
T 3scy_A 333 FERD 336 (361)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=128.09 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=153.8
Q ss_pred ccccCCccc---ceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC------CeeEEEcc
Q 019258 11 QVHRFPQSK---YIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT------RISSLSTS 80 (343)
Q Consensus 11 ~~~~~~~~~---~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~------~v~~v~~~ 80 (343)
.+..++... .+..++|+| +++.+ ++++.++ .|++|++.... ....+.... .+.+++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~s~----dg~~l~v~~~~~~-----~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 23 VDKVITIADAGPTPMVPMVAP----GGRIAYATVNKSE-----SLVKIDLVTGE---TLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp EEEEEECTTCTTCCCCEEECT----TSSEEEEEETTTT-----EEEEEETTTCC---EEEEEECCBTTEEEECTTCEEEC
T ss_pred EEEEEEcCCCCCCccceEEcC----CCCEEEEEeCCCC-----eEEEEECCCCC---eEeeEEcCCcccccccccceEEC
Confidence 344455455 688999999 77655 4544443 47899985532 222222222 67889999
Q ss_pred -CCCeEEEEc------------CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCC
Q 019258 81 -HQSLVAAST------------LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 81 -~~~~l~~~s------------~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~ 145 (343)
+++.|+++. .++.|.+|++...+....... ...+.++.|+ ++.++++ ++.|.+||+.++
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe--CCeEEEEECCCC
Confidence 777888876 579999999986554433321 2346677787 6667776 688999999988
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC-----------------------cEEEEEccccCCCCCe-eEEec
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY-----------------------GLQWWDLRRAGSGGPV-LQFKG 199 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~-----------------------~i~iwd~~~~~~~~~~-~~~~~ 199 (343)
+ ....+..+.. ...+.|+| +..++..+. ++ .|.+||+.. ++.. ..+..
T Consensus 165 ~-~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~ 238 (337)
T 1pby_B 165 T-LVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET---GEMAMREVRI 238 (337)
T ss_dssp E-EEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT---CCEEEEEEEE
T ss_pred c-Eeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC---CCceEeecCC
Confidence 5 4444433321 11225666 443333322 22 478999987 4443 11222
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
+. ..+.+++|+|++..+++ + ++.|.+||+.+.+....+. ....+.+++|+|++.
T Consensus 239 ~~-------~~~~~~~~s~dg~~l~~-~--~~~v~~~d~~~~~~~~~~~------------~~~~~~~~~~s~dg~---- 292 (337)
T 1pby_B 239 MD-------VFYFSTAVNPAKTRAFG-A--YNVLESFDLEKNASIKRVP------------LPHSYYSVNVSTDGS---- 292 (337)
T ss_dssp CS-------SCEEEEEECTTSSEEEE-E--ESEEEEEETTTTEEEEEEE------------CSSCCCEEEECTTSC----
T ss_pred CC-------CceeeEEECCCCCEEEE-e--CCeEEEEECCCCcCcceec------------CCCceeeEEECCCCC----
Confidence 21 45889999999876654 4 6899999998754433332 234578999999987
Q ss_pred CCCCccceEEEecCCeEEEEecCC
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|++++.++.|.+|+...
T Consensus 293 ------~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 293 ------TVWLGGALGDLAAYDAET 310 (337)
T ss_dssp ------EEEEESBSSEEEEEETTT
T ss_pred ------EEEEEcCCCcEEEEECcC
Confidence 678888999999999753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-14 Score=126.35 Aligned_cols=239 Identities=8% Similarity=-0.024 Sum_probs=150.0
Q ss_pred EEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEE
Q 019258 77 LSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVY 152 (343)
Q Consensus 77 v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~ 152 (343)
+++. ++.++++++.++.|++||....+.+...... ....+..+.++ ++.+ ++...++.|.+||+.+++....+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3455 5677888999999999999866554433321 21246678887 6554 566678999999999885333332
Q ss_pred cCCC----ccceEEEEeCC-CCEEEEEeCC------------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEE
Q 019258 153 DGNG----LVGFNCVKWAS-PTEFVTGGFG------------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 153 ~~~~----~~~v~~~~~~~-~~~l~t~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
..+. ...+.+++|+| ++.+++++.+ +.|.+||+..+...+.+..+... ..+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~ 154 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--------RQVYLMR 154 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--------SSCCCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--------Cccccee
Confidence 2221 22478899999 7778877755 99999999771111222223221 3488999
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc-------------------------c--c-----------
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA-------------------------V--T----------- 257 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------------------------~--~----------- 257 (343)
|+|++. +++ ++ +.|.+||+++++....+........ + .
T Consensus 155 ~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 230 (349)
T 1jmx_B 155 AADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 230 (349)
T ss_dssp ECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred ECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence 999987 655 33 3499999987554332221000000 0 0
Q ss_pred -------------------cCCccccEEEEEEee-cCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccc
Q 019258 258 -------------------HSLSESEVWEVQYDC-HTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAIN 316 (343)
Q Consensus 258 -------------------~~~h~~~v~~v~~~p-~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~ 316 (343)
...+...+..++|+| ++. .++++ ++.|++|+.... ..........+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~----------~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~ 298 (349)
T 1jmx_B 231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN----------QIYGV--LNRLAKYDLKQRKLIKAANLDHTYY 298 (349)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT----------EEEEE--ESEEEEEETTTTEEEEEEECSSCCC
T ss_pred cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC----------EEEEE--cCeEEEEECccCeEEEEEcCCCCcc
Confidence 000111345667777 765 56655 889999997543 223333345678
Q ss_pred eeeecCCCCCeeEEccCCceEEEEeC
Q 019258 317 SFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
++.++| ++++|++++.++.|++|+-
T Consensus 299 ~~~~s~-dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 299 CVAFDK-KGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEEECS-SSSCEEEESBSSEEEEEET
T ss_pred ceEECC-CCCEEEEecCCCeEEEEec
Confidence 999998 5677777777899999873
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-15 Score=129.79 Aligned_cols=230 Identities=10% Similarity=0.062 Sum_probs=149.2
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC--CeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT--RISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVD 108 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~--~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~ 108 (343)
++.++++++.++. |++||+.... ....+.... .+..++|+ +++.+ ++...++.|.+|++...+.....
T Consensus 10 ~~~~~v~~~~~~~-----v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 10 GHEYMIVTNYPNN-----LHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp TCEEEEEEETTTE-----EEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCe-----EEEEECCCCc---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 7788899888754 7799985532 222333333 67899999 66654 55567899999999865544333
Q ss_pred ccCCc---cccCeEEEEec--CCEEEEEeCC------------CcEEEEECCCCc--eEEEEEcCCCccceEEEEeCC-C
Q 019258 109 ENSGF---HVGPISGVDLT--GSECVSVGED------------GRVNLVSVIGGG--EFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 109 ~~~~~---h~~~v~~~~~~--~~~~~s~s~d------------g~v~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
..... +...+.++.|+ ++.+++++.+ +.|.+||+.+++ ........+. .+.+++|+| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg 159 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR--QVYLMRAADDG 159 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS--SCCCEEECTTS
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC--cccceeECCCC
Confidence 22100 02336778887 7788888765 899999998742 1223333333 488899999 5
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCC----------------C--------------------------
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG----------------K-------------------------- 206 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------------~-------------------------- 206 (343)
. +++++ +.|.+||+.. ++....+........ .
T Consensus 160 ~-l~~~~--~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKT---GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp C-EEEES--SSEEEECTTT---CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred c-EEEcc--CcEEEEeCCC---CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 5 55554 3499999977 554444432210000 0
Q ss_pred -------------------cccCeEEEEEcC-CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEE
Q 019258 207 -------------------ASGMIHSVDIHP-SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVW 266 (343)
Q Consensus 207 -------------------~~~~i~~v~~~p-~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 266 (343)
....+..++++| ++..++ ++ ++.|.+||+++.+....+. ....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~~~~~~~------------~~~~~~ 298 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQRKLIKAAN------------LDHTYY 298 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTTTEEEEEEE------------CSSCCC
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECccCeEEEEEc------------CCCCcc
Confidence 001356778889 887654 44 7899999998854433332 223467
Q ss_pred EEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 267 EVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 267 ~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.++|+|++. .|++++.++.|++|+...
T Consensus 299 ~~~~s~dg~----------~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 299 CVAFDKKGD----------KLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEECSSSS----------CEEEESBSSEEEEEETTT
T ss_pred ceEECCCCC----------EEEEecCCCeEEEEeccc
Confidence 899999987 577788899999999753
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=138.22 Aligned_cols=228 Identities=13% Similarity=0.034 Sum_probs=152.4
Q ss_pred CCCeeEEEcc-CCCeEEEEcC-CCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeC---CCcEEEEECCC
Q 019258 71 PTRISSLSTS-HQSLVAASTL-SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGE---DGRVNLVSVIG 144 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~-dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~---dg~v~~wd~~~ 144 (343)
..+|.++.|+ +++.|+.++. ||+++||++..++...+. ..+...+..+.|+ ++.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt---~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC---SSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee---cccccccccccCCCCeEEEEeccCCCCcceEEEEEec
Confidence 3469999999 8899998887 999999998654433322 1233578899998 644555554 45566665533
Q ss_pred --CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 145 --GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 145 --~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
......+.. ... ....+|+| ...+++.+.++.+.+||+.. ++ ...+.... . .+++|+|+|
T Consensus 98 ~~~g~~~~l~~-~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~---g~-~~~l~~~~-------~--~~~~~spDG 161 (582)
T 3o4h_A 98 SRPGEEQRLEA-VKP--MRILSGVDTGEAVVFTGATEDRVALYALDG---GG-LRELARLP-------G--FGFVSDIRG 161 (582)
T ss_dssp TSTTCCEECTT-SCS--BEEEEEEECSSCEEEEEECSSCEEEEEEET---TE-EEEEEEES-------S--CEEEEEEET
T ss_pred cCCCccccccC-CCC--ceeeeeCCCCCeEEEEecCCCCceEEEccC---Cc-EEEeecCC-------C--ceEEECCCC
Confidence 212233322 222 33445555 44555555666666999977 43 33443222 2 789999999
Q ss_pred CeEEEEEecC----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC--
Q 019258 221 KHTCLAGGSS----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG-- 294 (343)
Q Consensus 221 ~~~~~sg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg-- 294 (343)
+.+ ++++.+ +.|++||+.+++. .. + ..|...+..++|+|++. .|+++..+|
T Consensus 162 ~~l-a~~~~~~~~~~~i~~~d~~~g~~-~~-l----------~~~~~~~~~~~~SpDG~----------~l~~~~~~~~~ 218 (582)
T 3o4h_A 162 DLI-AGLGFFGGGRVSLFTSNLSSGGL-RV-F----------DSGEGSFSSASISPGMK----------VTAGLETAREA 218 (582)
T ss_dssp TEE-EEEEEEETTEEEEEEEETTTCCC-EE-E----------CCSSCEEEEEEECTTSC----------EEEEEECSSCE
T ss_pred CEE-EEEEEcCCCCeEEEEEcCCCCCc-eE-e----------ecCCCccccceECCCCC----------EEEEccCCCee
Confidence 865 445555 6799999887543 22 2 35778899999999998 677888888
Q ss_pred eEEEEecCCCccccccc-ccccceee--------ecCCCCCeeEEccCCceEEEEe
Q 019258 295 ILAVVEQGEEPFELLAE-PCAINSFD--------IDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~~~~~~~~-~~~i~s~~--------~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.|++|+.......++.. ...+.++. |+| +|..++++++++.+.+|.
T Consensus 219 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 219 RLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEE
Confidence 89999975433333333 34566677 999 458889999999999885
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=117.17 Aligned_cols=273 Identities=8% Similarity=-0.074 Sum_probs=164.2
Q ss_pred EEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc
Q 019258 24 VRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSA 100 (343)
Q Consensus 24 v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~ 100 (343)
.+|+| +++.|+.++. ++ ...|++|++...... ... .+...+..+.|+ +++.|+.++.++.|++|++.
T Consensus 41 ~~~Sp----Dg~~l~~~~~~~g---~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 41 KCFTR----DGSKLLFGGAFDG---PWNYYLLDLNTQVAT---QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp CCBCT----TSCEEEEEECTTS---SCEEEEEETTTCEEE---ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ccCCC----CCCEEEEEEcCCC---CceEEEEeCCCCceE---EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 78999 8999998886 43 235888888553221 112 233344567899 88899999999999999998
Q ss_pred CceeeeeeccCCccccCeEEEEe--c--CCEEEEE----------------------eCCCcEEEEECCCCceEEEEEcC
Q 019258 101 MQVLLSVDENSGFHVGPISGVDL--T--GSECVSV----------------------GEDGRVNLVSVIGGGEFKRVYDG 154 (343)
Q Consensus 101 ~~~~~~~~~~~~~h~~~v~~~~~--~--~~~~~s~----------------------s~dg~v~~wd~~~~~~~~~~~~~ 154 (343)
..+...+... +.+.+....| + +..++.. ..+..|.+||+.+++ ...+...
T Consensus 111 ~g~~~~~~~~---~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~ 186 (388)
T 3pe7_A 111 TLEENVVYQV---PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQE 186 (388)
T ss_dssp TCCEEEEEEC---CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEE
T ss_pred CCcceeeeec---hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecC
Confidence 6655444332 3333333333 3 5555532 245789999999874 5555443
Q ss_pred CCccceEEEEeCC--CCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 155 NGLVGFNCVKWAS--PTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 155 ~~~~~v~~~~~~~--~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
.. .+..+.|+| +..++.+..+ ..|.++|+.. .....+..... ...+..++|+|++..++..
T Consensus 187 ~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~-----~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 187 NQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG----TNMRKVKTHAE-----GESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp SS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS----CCCEESCCCCT-----TEEEEEEEECTTSSCEEEE
T ss_pred Cc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC----CceEEeeeCCC-----CcccccceECCCCCEEEEE
Confidence 33 488999999 4456666553 3677777654 33334332210 0247788999999877555
Q ss_pred EecCC----cEEEEEccCCceeeeeecCCCCcccccCCcccc---EEEEEEeecCCCCcCCCCCccceEEE---------
Q 019258 227 GGSSG----TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE---VWEVQYDCHTKSSNISSSRVLPAMFC--------- 290 (343)
Q Consensus 227 g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~v~~~p~~~~~~~~~~~~~~l~s~--------- 290 (343)
+..++ .|++||+.+++....... ..+... ...+.|+|++.. |+..
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~---------~~~~~~~~~~~~~~~spdg~~----------l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQLTSM---------PACSHLMSNYDGSLMVGDGSD----------APVDVQDDSGYKI 316 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEEEEEE---------CCEEEEEECTTSSEEEEEECC----------C------------
T ss_pred ecCCCCCcceEEEEecCCCceEEEEcC---------CCceeeeecCCCCeEccCCCc----------ceeEeeecccccc
Confidence 55433 399999987643221110 111111 112379999884 4432
Q ss_pred ecCCeEEEEecCCCccccccc-cc-----------ccceeeecCCCCCeeEEccC-Cc--eEEEEe
Q 019258 291 SEDGILAVVEQGEEPFELLAE-PC-----------AINSFDIDPQNPSDVICSLE-WE--SIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~~~~~~~~~~-~~-----------~i~s~~~~~~~~~~l~~~~~-~~--~i~~~~ 341 (343)
..+..|++|+........+.. .. .+.++.|+| +|+.|+.+++ ++ .||.++
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEE
Confidence 456689999976443333332 33 478889999 5677776654 34 344443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=140.38 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=161.8
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC----CeeEEEcc-CCCeEEEEcC------
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT----RISSLSTS-HQSLVAASTL------ 90 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~----~v~~v~~~-~~~~l~~~s~------ 90 (343)
..++|+| ++.+++++ .|+ .|++|++..... ...+.+.. .+.+++|+ ++++|+.++.
T Consensus 19 ~~~~~s~----dg~~~~~~-~d~-----~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~ 85 (719)
T 1z68_A 19 FFPNWIS----GQEYLHQS-ADN-----NIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85 (719)
T ss_dssp CCCEESS----SSEEEEEC-TTS-----CEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred CccEECC----CCeEEEEc-CCC-----CEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence 4789999 77655544 454 388999965332 22222221 38999999 8888888876
Q ss_pred ---CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce-----
Q 019258 91 ---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF----- 160 (343)
Q Consensus 91 ---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v----- 160 (343)
++.|++|++..++.+.... ....+..+.|+ |+.|+.+. |+.|++||+.+++ ..++........+
T Consensus 86 ~s~~~~i~~~d~~~g~~~~~~~----l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~~v~~g~~ 159 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVRGNE----LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP-PFQITFNGRENKIFNGIP 159 (719)
T ss_dssp SCEEEEEEEEETTTTEECCSSC----CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC-CEECCCCCBTTTEEESSC
T ss_pred eecceEEEEEECCCCcccccee----cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcCCeEcccc
Confidence 7899999998665411011 12457889998 88888875 7899999998874 3433221111012
Q ss_pred ------------EEEEeCC-CCEEEEEeCCC----------------------------------cEEEEEccccCCCCC
Q 019258 161 ------------NCVKWAS-PTEFVTGGFGY----------------------------------GLQWWDLRRAGSGGP 193 (343)
Q Consensus 161 ------------~~~~~~~-~~~l~t~~~d~----------------------------------~i~iwd~~~~~~~~~ 193 (343)
.+++|+| +..|++++.|. .|++||+.. ++.
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~---~~~ 236 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY---PAY 236 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC---HHH
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC---CCc
Confidence 4899999 78888887652 788999876 332
Q ss_pred e--eEE------ecccCCCCCcccCeEEEEEcCCCCeEEEEEecC----CcEEEEE----ccCCceeeeeecCCCCcccc
Q 019258 194 V--LQF------KGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS----GTVFAWD----LRWQQQSIVLSGVGTGEAVT 257 (343)
Q Consensus 194 ~--~~~------~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d----g~v~iwd----~~~~~~~~~~~~~~~~~~~~ 257 (343)
. ..+ ..+. ..+..++|+|++ .++++.... ..|.+|| +.+++. ..+.. ..
T Consensus 237 ~~~~~~~~~~~~~~~~-------~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~------~~ 301 (719)
T 1z68_A 237 VGPQEVPVPAMIASSD-------YYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQE------HI 301 (719)
T ss_dssp HCCEECCCCHHHHTSC-------EEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGE------EE
T ss_pred cceeEccCCccCCCCc-------ceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEe------cc
Confidence 1 111 1122 668999999996 455554332 2488899 655322 11110 00
Q ss_pred cCCccccEE-----EEEEeecCCCCcCCCCCccceE-EEecCC--eEEEEecCCCc-ccccccccccceeeecCCCCCee
Q 019258 258 HSLSESEVW-----EVQYDCHTKSSNISSSRVLPAM-FCSEDG--ILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDV 328 (343)
Q Consensus 258 ~~~h~~~v~-----~v~~~p~~~~~~~~~~~~~~l~-s~s~dg--~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l 328 (343)
...|...+. .+.|+|++.. .++ +...+| .|++|+..... ..+......+.++.+. +++..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~---------l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAIS---------YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSC---------EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEE
T ss_pred cccCCceEccccCCccEECCCCCe---------EEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEE
Confidence 013555565 7899999873 233 344556 46777754332 2322223345555555 333344
Q ss_pred EEccC----CceEEEE
Q 019258 329 ICSLE----WESIAIV 340 (343)
Q Consensus 329 ~~~~~----~~~i~~~ 340 (343)
+.+.+ .+.+++|
T Consensus 372 ~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIY 387 (719)
T ss_dssp EEESCGGGCTTCBEEE
T ss_pred EEEecCCCCCceEEEE
Confidence 44433 3445554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=116.11 Aligned_cols=244 Identities=10% Similarity=0.022 Sum_probs=148.6
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-CceeeeeeccCCccccCeEEEEec--CCE--EEEEe-------------
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLSVDENSGFHVGPISGVDLT--GSE--CVSVG------------- 132 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~~~h~~~v~~~~~~--~~~--~~s~s------------- 132 (343)
..+..++|+ ++++|++++.+ .|.+|++. +++........ .+ +...++.++ ++. ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-cC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 468899999 78888888877 99999986 44433222110 01 223446666 553 34443
Q ss_pred CCCcEEEEECCC-CceEEEEEc---CCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEcc-ccCCCCCe--eEEecccCC
Q 019258 133 EDGRVNLVSVIG-GGEFKRVYD---GNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLR-RAGSGGPV--LQFKGNFGS 203 (343)
Q Consensus 133 ~dg~v~~wd~~~-~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~-~~~~~~~~--~~~~~~~~~ 203 (343)
.+|++.+|++.. ++ ...... ......+.+++|+| ++.++++.. ++.|++||+. . ++.. ..+....
T Consensus 117 ~~g~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~---g~~~~~~~~~~~~-- 190 (365)
T 1jof_A 117 FAGYGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS---GEVELVGSVDAPD-- 190 (365)
T ss_dssp SCCEEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT---SCEEEEEEEECSS--
T ss_pred CCceEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC---CCEEEeeeEecCC--
Confidence 689999999974 43 322221 11222689999999 666666654 7899999997 4 3321 2222110
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC--Ccee---eeeecCCCCcccccCCccc------cEEEEE-Ee
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW--QQQS---IVLSGVGTGEAVTHSLSES------EVWEVQ-YD 271 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~--~~~~---~~~~~~~~~~~~~~~~h~~------~v~~v~-~~ 271 (343)
+...+..++|+|+++.++++...++.|.+|++.. ++.. ..+...... ..+|.. .+..++ |+
T Consensus 191 ---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 191 ---PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG----IPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp ---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT----CCCBCTTTSSBSEEEEEEEEC
T ss_pred ---CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC----cCCcccccccccccccEEEEC
Confidence 0045889999999987766555688999998753 3221 111110000 012222 588999 99
Q ss_pred ecCCCCcCCCCCccceEEEec-CC-----eEEEEecC-CCcccc----cc-cccccceeeecCC--CCCeeEEccC-Cce
Q 019258 272 CHTKSSNISSSRVLPAMFCSE-DG-----ILAVVEQG-EEPFEL----LA-EPCAINSFDIDPQ--NPSDVICSLE-WES 336 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~-dg-----~i~~~~~~-~~~~~~----~~-~~~~i~s~~~~~~--~~~~l~~~~~-~~~ 336 (343)
|++. +|+++.. ++ +|.+|+.. ...... .. ......+++++|. +|++|++++. ++.
T Consensus 264 pdG~----------~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 264 FSGK----------YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp TTSS----------EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred CCCC----------EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 9987 4555543 23 89999864 222221 21 2345778899984 4688888775 488
Q ss_pred EEEEe
Q 019258 337 IAIVS 341 (343)
Q Consensus 337 i~~~~ 341 (343)
|.+|+
T Consensus 334 v~v~~ 338 (365)
T 1jof_A 334 LEIYR 338 (365)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=116.41 Aligned_cols=257 Identities=12% Similarity=-0.023 Sum_probs=153.3
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCe--EEEEc------
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSL--VAAST------ 89 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~--l~~~s------ 89 (343)
..+..++|+| ++++|++++.+ .+.+|++........+......+.+..++|+ +++. ++++.
T Consensus 40 ~~~~~~a~sp----dg~~l~~~~~~------~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDH----ERKNIYGAAMK------KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECT----TSSEEEEEEBT------EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECC----CCCEEEEEccc------eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 4688899999 88888888876 3779998411111111111112446678888 6663 44443
Q ss_pred -------CCCcEEEEEccC-ceeeeeec-cCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECC-CCceE-EEEEcC-
Q 019258 90 -------LSGSLHVLSSAM-QVLLSVDE-NSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVI-GGGEF-KRVYDG- 154 (343)
Q Consensus 90 -------~dg~v~v~~~~~-~~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~-~~~~~-~~~~~~- 154 (343)
.+|.+.+|++.. ++...... ....+...+.++.|+ ++.++++. .++.|.+||+. +++.. ......
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 689999999973 33221111 111244578899998 77777665 46899999998 66421 122221
Q ss_pred -CCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCe---eEEecccCCCCCccc------CeEEEE-EcCCCC
Q 019258 155 -NGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPV---LQFKGNFGSQGKASG------MIHSVD-IHPSRK 221 (343)
Q Consensus 155 -~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~------~i~~v~-~~p~~~ 221 (343)
+.. .+..++|+| ++.+++++. +++|.+|++... .++.. ..+.........+.. .+..++ |+|+++
T Consensus 190 ~~g~-~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~ 267 (365)
T 1jof_A 190 DPGD-HPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp STTC-CEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CCCC-CCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC
Confidence 123 689999999 666766664 789999987530 12221 122211100000001 488999 999998
Q ss_pred eEEEEEecCC-----cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee---cCCCCcCCCCCccceEEEec-
Q 019258 222 HTCLAGGSSG-----TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC---HTKSSNISSSRVLPAMFCSE- 292 (343)
Q Consensus 222 ~~~~sg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p---~~~~~~~~~~~~~~l~s~s~- 292 (343)
.++++...+. +|.+||+............ ...+......++|+| ++. +|++++.
T Consensus 268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-------~~~~~~~~~~~a~sp~~~dg~----------~l~v~~~~ 330 (365)
T 1jof_A 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-------SPTPTSGGHSNAVSPCPWSDE----------WMAITDDQ 330 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-------EECSSCCTTCCCEEECTTCTT----------EEEEECSS
T ss_pred EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-------eecCCCCcccceecCCCcCCC----------EEEEEEcC
Confidence 7765544333 8999999632222221100 012334456789999 676 6777765
Q ss_pred CCeEEEEecCCC
Q 019258 293 DGILAVVEQGEE 304 (343)
Q Consensus 293 dg~i~~~~~~~~ 304 (343)
+++|.+|+...+
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 489999986543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-11 Score=106.72 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=155.8
Q ss_pred CCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeecc---CCccccCeEEEEe-c-CCEEEEEe-C-CCcEEEEE
Q 019258 70 PPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDEN---SGFHVGPISGVDL-T-GSECVSVG-E-DGRVNLVS 141 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~---~~~h~~~v~~~~~-~-~~~~~s~s-~-dg~v~~wd 141 (343)
+-..+.++++. ++.++++...++.|.+|+... ..+..... ...|...+.++.+ . ...++.+. . ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 33567889998 677778878899999999763 22222211 1234557889998 3 44444444 3 88999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
. +++ ....+.......+.++++.+ ++.+++...++.|.+||.. ++.+..+.... .. ..+..++++|++
T Consensus 107 ~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~-~~----~~p~~i~~~~~g 175 (286)
T 1q7f_A 107 Q-YGQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCSK-HL----EFPNGVVVNDKQ 175 (286)
T ss_dssp T-TSC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECTT-TC----SSEEEEEECSSS
T ss_pred C-CCc-EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC----CCEEEEeCCCC-cc----CCcEEEEECCCC
Confidence 4 443 33444333222689999999 6666666778999999963 34444443211 01 458999999987
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC-eEEEE
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG-ILAVV 299 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg-~i~~~ 299 (343)
. ++++...++.|++||... .....+.. .++......|+++|++. .+++...++ .|.+|
T Consensus 176 ~-l~v~~~~~~~i~~~~~~g-~~~~~~~~---------~g~~~~p~~i~~d~~G~----------l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 176 E-IFISDNRAHCVKVFNYEG-QYLRQIGG---------EGITNYPIGVGINSNGE----------ILIADNHNNFNLTIF 234 (286)
T ss_dssp E-EEEEEGGGTEEEEEETTC-CEEEEESC---------TTTSCSEEEEEECTTCC----------EEEEECSSSCEEEEE
T ss_pred C-EEEEECCCCEEEEEcCCC-CEEEEEcc---------CCccCCCcEEEECCCCC----------EEEEeCCCCEEEEEE
Confidence 5 777777899999999753 33223221 12335688999999876 566777775 99999
Q ss_pred ecCCCcccccccc---cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQGEEPFELLAEP---CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~~~~~~~~~~~~---~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+........+... ..+.++++++ +|..+++ +.++.|++|+
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 235 TQDGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEE
T ss_pred CCCCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEE
Confidence 9754433333222 2356899998 5566666 5678999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-11 Score=109.07 Aligned_cols=245 Identities=13% Similarity=0.081 Sum_probs=161.4
Q ss_pred CCCeeEEEcc-CCCeEEEEcCC------------------------CcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 71 PTRISSLSTS-HQSLVAASTLS------------------------GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~d------------------------g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
-+.+.+++++ +++++++...+ +.|.+||..+.+.+.... ..+......++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--KNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--TTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--CCccCCceEEEECC
Confidence 3679999999 77778777777 479999886554332221 2344567889988
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceEEEEEc--------CCCccceEEEEeCC--CCEEEEEe-CCCcEEEEEccccCCCC
Q 019258 125 -GSECVSVGEDGRVNLVSVIGGGEFKRVYD--------GNGLVGFNCVKWAS--PTEFVTGG-FGYGLQWWDLRRAGSGG 192 (343)
Q Consensus 125 -~~~~~s~s~dg~v~~wd~~~~~~~~~~~~--------~~~~~~v~~~~~~~--~~~l~t~~-~d~~i~iwd~~~~~~~~ 192 (343)
++.+++...++.|++||..........+. .........+++++ +..+++.+ .++.|++||. . +.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~---g~ 176 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-S---GK 176 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-T---SC
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-C---CC
Confidence 77888888899999999865421223222 11122588999998 44555554 5999999994 3 45
Q ss_pred CeeEEecccCCC---CCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 193 PVLQFKGNFGSQ---GKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 193 ~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.+..+....... ..+-.....++++|++..++++...+++|++||..+++....+.. ..+...+..++
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~---------~~~~~~~~~~~ 247 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH---------ASFGRNVFAIS 247 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC---------TTTTTCEEEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec---------cccCCCcceee
Confidence 555543221000 001134889999998667888888999999999986554444321 23556788999
Q ss_pred Eee------cCCCCcCCCCCccceEEEecCCeEEEEecCC-Ccccccc----cccccceeeecCCCCCeeEEccCCceEE
Q 019258 270 YDC------HTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLA----EPCAINSFDIDPQNPSDVICSLEWESIA 338 (343)
Q Consensus 270 ~~p------~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~----~~~~i~s~~~~~~~~~~l~~~~~~~~i~ 338 (343)
|+| ++. ..++.+.+++|++|+... +....+. ......++++++ +|..+++...++.|+
T Consensus 248 ~~pg~~~~~~g~----------~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 248 YIPGFLFAVNGK----------PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVW 316 (329)
T ss_dssp EETTEEEEEECC----------CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred ecCCEEEEeCCC----------EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence 998 222 223334556899998543 2333321 224578999998 567888888888999
Q ss_pred EEe
Q 019258 339 IVS 341 (343)
Q Consensus 339 ~~~ 341 (343)
+|+
T Consensus 317 ~~~ 319 (329)
T 3fvz_A 317 KFT 319 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-13 Score=129.82 Aligned_cols=276 Identities=9% Similarity=-0.027 Sum_probs=163.8
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCC----CCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDA----DSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~----~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
|..++|+| ++++|+.++..... ..-.|++|++.+... +........+..++|+ +++.|+.+. ++.|+
T Consensus 62 ~~~~~~Sp----Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~---~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 62 ASNYGLSP----DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF---VRGNELPRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp CSEEEECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE---CCSSCCCSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eeeEEECC----CCCeEEEEecCceeEEeecceEEEEEECCCCcc---ccceecCcccccceECCCCCEEEEEE-CCeEE
Confidence 88999999 89999988762100 001488999965322 1111223578999999 888888775 78999
Q ss_pred EEEccCceeeeeeccCCccccCe-----------------EEEEec--CCEEEEEeCCC---------------------
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPI-----------------SGVDLT--GSECVSVGEDG--------------------- 135 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~--~~~~~s~s~dg--------------------- 135 (343)
+|++..++...+... ++...| .++.|+ |+.|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 134 LKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 999975544433211 222222 478998 88999887652
Q ss_pred -------------cEEEEECCCCceE--EEEE-----cCCCccceEEEEeCCCC-EEEEEeCC----CcEEEEE----cc
Q 019258 136 -------------RVNLVSVIGGGEF--KRVY-----DGNGLVGFNCVKWASPT-EFVTGGFG----YGLQWWD----LR 186 (343)
Q Consensus 136 -------------~v~~wd~~~~~~~--~~~~-----~~~~~~~v~~~~~~~~~-~l~t~~~d----~~i~iwd----~~ 186 (343)
.|.+||+.+++.. ..+. ..+.. .+..++|+|.. .+++.... ..|.+|| +.
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 7889999886421 1221 12333 68999999944 44443322 2488889 65
Q ss_pred ccCCCCCeeEE----ecccCCCCCcccCeE-----EEEEcCCCCeEEE-EEecCC--cEEEEEccCCceeeeeecCCCCc
Q 019258 187 RAGSGGPVLQF----KGNFGSQGKASGMIH-----SVDIHPSRKHTCL-AGGSSG--TVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 187 ~~~~~~~~~~~----~~~~~~~~~~~~~i~-----~v~~~p~~~~~~~-sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
. ++....+ ..+. +.+. .+.|+|++..+++ +...+| .|.+||+.... ... +
T Consensus 291 ~---g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~-l------ 352 (719)
T 1z68_A 291 T---WDCPKTQEHIEESRT-------GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQ-I------ 352 (719)
T ss_dssp S---EECCGGGEEEEECSS-------SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEE-C------
T ss_pred C---CceEEEEecccccCC-------ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEe-c------
Confidence 5 3322222 1222 4454 7899999987655 344555 46777776543 222 2
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC-----CeEEEEecCC--C--cccccc-----cccccceeee
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED-----GILAVVEQGE--E--PFELLA-----EPCAINSFDI 320 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d-----g~i~~~~~~~--~--~~~~~~-----~~~~i~s~~~ 320 (343)
..+...+..+.+. ++. .++..+.+ +...+|.... . ....+. +...+.++.+
T Consensus 353 ----t~~~~~v~~~~~~-d~~----------~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 417 (719)
T 1z68_A 353 ----TSGKWEAINIFRV-TQD----------SLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASF 417 (719)
T ss_dssp ----SCSSSCEEEEEEE-CSS----------EEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEE
T ss_pred ----ccCceEEEEEEEE-eCC----------EEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEE
Confidence 2345567788877 666 45555544 6677765432 1 112222 2345778888
Q ss_pred cCCCCCeeEE-ccCC--ceEEEEe
Q 019258 321 DPQNPSDVIC-SLEW--ESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~-~~~~--~~i~~~~ 341 (343)
+++ +++++. .+.. ..+++|+
T Consensus 418 s~d-g~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 418 SDY-AKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp CGG-GSSEEEEECCBSSCEEEEEC
T ss_pred CCC-CCEEEEEcCCCCCCeEEEEE
Confidence 884 455553 3222 3455553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-11 Score=102.76 Aligned_cols=241 Identities=10% Similarity=0.022 Sum_probs=153.1
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc----CCCCCCeeEEEcc--CCCeEEEEcC-
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ----WTPPTRISSLSTS--HQSLVAASTL- 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~----~~~~~~v~~v~~~--~~~~l~~~s~- 90 (343)
-..+..|++.| +++++++.+.++ .|.+|+...... ..+.. ..+...+.++++. ++.++++...
T Consensus 29 ~~~p~~v~~~~----~g~l~v~~~~~~-----~i~~~d~~g~~~-~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 29 FTEPSGVAVNA----QNDIIVADTNNH-----RIQIFDKEGRFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp BSCEEEEEECT----TCCEEEEEGGGT-----EEEEECTTSCEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred cCCCceEEECC----CCCEEEEECCCC-----EEEEECCCCcEE-EEecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 35688999998 778888877664 377888743211 00100 1223467899994 4444444433
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS- 167 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~- 167 (343)
++.|.+|+.. .+.+.... ..+...+.++.+. +..+++...++.|.+||.... .............+.++++++
T Consensus 99 ~~~i~~~d~~-g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 99 THQIQIYNQY-GQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp GCEEEEECTT-SCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSS
T ss_pred CCEEEEECCC-CcEEEEec--CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCC
Confidence 8899999844 33332221 1244567889887 777777778899999997543 333332212222589999999
Q ss_pred CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-cEEEEEccCCceeee
Q 019258 168 PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-TVFAWDLRWQQQSIV 246 (343)
Q Consensus 168 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-~v~iwd~~~~~~~~~ 246 (343)
++.+++...++.|++||... +.+..+.... .. .....++++|++ .++++...++ .|.+||.. ++....
T Consensus 175 g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g-~~----~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~~~~~ 243 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNYEG----QYLRQIGGEG-IT----NYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQLISA 243 (286)
T ss_dssp SEEEEEEGGGTEEEEEETTC----CEEEEESCTT-TS----CSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEcCCC----CEEEEEccCC-cc----CCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CCEEEE
Confidence 55666666799999999733 4444443221 01 458899999988 4667777775 99999964 333333
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+.. ......+.+++++|++. .+++ +.|++|++|+...
T Consensus 244 ~~~---------~~~~~~~~~i~~~~~g~----------l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 244 LES---------KVKHAQCFDVALMDDGS----------VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEE---------SSCCSCEEEEEEETTTE----------EEEE-ETTTEEEEEECSC
T ss_pred Ecc---------cCCCCcceeEEECCCCc----------EEEE-CCCCeEEEEEccc
Confidence 321 11223478999999875 4455 6799999998743
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-11 Score=107.58 Aligned_cols=272 Identities=11% Similarity=0.052 Sum_probs=163.1
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
..|.++.|+| +...++..+.++. ++.|.- ... .....+...+.++.|+ ++.+++++..++.|.+|
T Consensus 6 ~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~---~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 6 QDLPTLFYSG----KSNSAVPIISESE-----LQTITA---EPW--LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKI 71 (333)
T ss_dssp CCCCBCCSCG----GGGCSSCCCCGGG-----SCEEEC---EEE--EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEE
T ss_pred cccceeeecC----CccceeEEeeccc-----Cccccc---cee--EEEeccCccccCcEECCCCCEEEEECCCCEEEEE
Confidence 3577888888 4444444444543 446622 111 1112344567899998 77777788889999999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC----CcEEEEECCCCceEEEEEc-CCCccceEEEEeCC-CC
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED----GRVNLVSVIGGGEFKRVYD-GNGLVGFNCVKWAS-PT 169 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d----g~v~~wd~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~ 169 (343)
+....+...... .+...+.++.++ +..+++...+ +.|.+||..++. ...... ......+.++.+.+ +.
T Consensus 72 d~~~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 72 NPETKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp CTTTCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSC
T ss_pred eCCCCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCC
Confidence 987544332221 244678999998 6666766666 689999998764 333332 11222689999999 55
Q ss_pred EEEEEeC------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC-c
Q 019258 170 EFVTGGF------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ-Q 242 (343)
Q Consensus 170 ~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~-~ 242 (343)
.+++... .+.|..+|... ..+..+.... .....++++|++..++++.+.++.|.+||++.. .
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNI-------SVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred EEEEeccccccCCCceEEEEeCCC----CEEEEeecCC-------CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 5554443 24455555433 2333333221 457899999998777777777899999998642 2
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccccc-------cc
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPC-------AI 315 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~-------~i 315 (343)
....+.. ........+ ..+..+++++++. ..++...++.|++|+...+....+..+. .+
T Consensus 217 ~~~~~~~---~~~~~~~~~-~~~~~i~~d~~G~----------l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~ 282 (333)
T 2dg1_A 217 TIQPFGA---TIPYYFTGH-EGPDSCCIDSDDN----------LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRS 282 (333)
T ss_dssp SEEEEEE---EEEEECCSS-SEEEEEEEBTTCC----------EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBC
T ss_pred Ccccccc---eEEEecCCC-CCCCceEECCCCC----------EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCc
Confidence 1111000 000000112 4678899998876 4566667899999987544333333222 57
Q ss_pred ceeeecCCCCCeeEEccCC
Q 019258 316 NSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~~~ 334 (343)
.++.+++ ++..|..++.+
T Consensus 283 ~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 283 THPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CEEEECT-TSCEEEEEEEC
T ss_pred ceEEECC-CCCEEEEEeCc
Confidence 8999987 45566544433
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-11 Score=108.17 Aligned_cols=272 Identities=8% Similarity=-0.097 Sum_probs=158.4
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCC-eeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTR-ISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~-v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
+..++|+| ++++|+..+.+. +...|++|++..... ......... ...+.|+ +++.|+.++.++.|++|+
T Consensus 38 ~~~~~~Sp----dG~~l~~~~~~~--g~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQ----DGKKLLFAGDFD--GNRNYYLLNLETQQA---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCT----TSCEEEEEECTT--SSCEEEEEETTTTEE---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCC----CCCEEEEEEecC--CCceEEEEECCCCcE---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 77889999 888887765542 223578888855321 111222233 3347788 888998998988999999
Q ss_pred ccCceeeeeeccCCccccCeE---EEE----------------ec--CCEEEEE-----eCCCcEEEEECCCCceEEEEE
Q 019258 99 SAMQVLLSVDENSGFHVGPIS---GVD----------------LT--GSECVSV-----GEDGRVNLVSVIGGGEFKRVY 152 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~---~~~----------------~~--~~~~~s~-----s~dg~v~~wd~~~~~~~~~~~ 152 (343)
+...+...+... +.+... .+. ++ ++.++.. ..+..|.+||+.+++ ...+.
T Consensus 109 ~~~~~~~~~~~~---~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~~~ 184 (396)
T 3c5m_A 109 LETLEEQVIYTV---DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-LEVIH 184 (396)
T ss_dssp TTTCCEEEEEEC---CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-EEEEE
T ss_pred CCCCCcEEEEec---ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-EEeec
Confidence 875544333321 111111 111 12 2222222 356689999998874 44444
Q ss_pred cCCCccceEEEEeCC--CCEEEEEeCC------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 153 DGNGLVGFNCVKWAS--PTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 153 ~~~~~~~v~~~~~~~--~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
.... .+..+.|+| +..++..+.+ ..|.+||+.. + ....+..... . ..+..++|+|++..++
T Consensus 185 ~~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~---~-~~~~l~~~~~-~----~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 185 QDTA--WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG---S-NVRKIKEHAE-G----ESCTHEFWIPDGSAMA 253 (396)
T ss_dssp EESS--CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS---C-CCEESSCCCT-T----EEEEEEEECTTSSCEE
T ss_pred cCCc--ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC---C-ceeEeeccCC-C----ccccceEECCCCCEEE
Confidence 3333 588999998 4456665543 4688888755 2 2333322110 0 3488899999998766
Q ss_pred EEEecC----CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee-cCCCCcCCCCCccceEEEe--------
Q 019258 225 LAGGSS----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC-HTKSSNISSSRVLPAMFCS-------- 291 (343)
Q Consensus 225 ~sg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~~~~~~~l~s~s-------- 291 (343)
+++..+ +.|++||+.+++.. .+. . .. ... +.|+| ++. .+++++
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~-~l~----------~-~~-~~~-~~~s~~dg~----------~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETLENE-EVM----------V-MP-PCS-HLMSNFDGS----------LMVGDGCDAPVDVA 309 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTCCEE-EEE----------E-CC-SEE-EEEECSSSS----------EEEEEECCC-----
T ss_pred EEecCCCCccceEEEEECCCCCeE-Eee----------e-CC-CCC-CCccCCCCc----------eEEEecCCcceeec
Confidence 554432 34999999875432 222 0 11 122 88999 876 455543
Q ss_pred --------cCCeEEEEecCCCccccccc-cc-----------ccceeeecCCCCCeeEEccC-Cc--eEEEEe
Q 019258 292 --------EDGILAVVEQGEEPFELLAE-PC-----------AINSFDIDPQNPSDVICSLE-WE--SIAIVS 341 (343)
Q Consensus 292 --------~dg~i~~~~~~~~~~~~~~~-~~-----------~i~s~~~~~~~~~~l~~~~~-~~--~i~~~~ 341 (343)
.++.|++|+........+.. .. .+.++.++| +|+.|+.+++ ++ .|+.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred cccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 34689999975433333332 22 256778898 5677766654 34 344443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=120.36 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=147.4
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC---CCCCCeeEEEcc-CCCeEEEEcCC----
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW---TPPTRISSLSTS-HQSLVAASTLS---- 91 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~---~~~~~v~~v~~~-~~~~l~~~s~d---- 91 (343)
+...++|+| ++.+++++ |+ .|++|++.......++... .......++.|+ +++.|+.++.+
T Consensus 18 ~~~~~~w~~----dg~~~~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 18 KLYSLRWIS----DHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCEEECS----SSEEEEEE--TT-----EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccEECC----CCcEEEEc--CC-----cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 466899999 78888876 64 3789999654322111111 111233457889 88888888875
Q ss_pred -----CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEc-CCCc------
Q 019258 92 -----GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYD-GNGL------ 157 (343)
Q Consensus 92 -----g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~-~~~~------ 157 (343)
+.+.+||+..++...+ ..|.+.+....|+ |+.++.+. |+.|.+||+.++. ..++.. ++..
T Consensus 87 r~~~~~~~~~~d~~~~~~~~l----~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~-~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLITE----ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP-SYRITWTGKEDIIYNGI 160 (740)
T ss_dssp SSCEEEEEEEEETTTTEECCS----SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC-CEECCSCCBTTTEEESB
T ss_pred EEccceEEEEEECCCCcEEEc----ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc-eEEEcCCCCccceecCc
Confidence 5677999986653322 2466789999999 88888874 6789999998874 444322 2211
Q ss_pred ----------cceEEEEeCC-CCEEEEEeCCC------------------------------------cEEEEEccccCC
Q 019258 158 ----------VGFNCVKWAS-PTEFVTGGFGY------------------------------------GLQWWDLRRAGS 190 (343)
Q Consensus 158 ----------~~v~~~~~~~-~~~l~t~~~d~------------------------------------~i~iwd~~~~~~ 190 (343)
.....+.|+| +..|+.++.|. +|++||+.....
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~ 240 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence 0123588999 77788776433 355555532000
Q ss_pred CC--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe---cCCcEEEEEccCCc----e--eeeeecCCCCcccccC
Q 019258 191 GG--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG---SSGTVFAWDLRWQQ----Q--SIVLSGVGTGEAVTHS 259 (343)
Q Consensus 191 ~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~---~dg~v~iwd~~~~~----~--~~~~~~~~~~~~~~~~ 259 (343)
++ ....+..... ...+...+..++|+|++..++.... .+..|.+||+.+++ . ...+.. .
T Consensus 241 ~~~~~~~~l~~~~~-~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~---------~ 310 (740)
T 4a5s_A 241 VTNATSIQITAPAS-MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE---------M 310 (740)
T ss_dssp SSCCCEEEECCCHH-HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE---------E
T ss_pred CCcceEEEecCCcc-CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee---------c
Confidence 10 1222221000 0001156899999999874443322 23469999998765 1 111110 2
Q ss_pred CccccEE-----EEEEeecCCCCcCCCCCccceE-EEec-CC--eEEEEecCCCc
Q 019258 260 LSESEVW-----EVQYDCHTKSSNISSSRVLPAM-FCSE-DG--ILAVVEQGEEP 305 (343)
Q Consensus 260 ~h~~~v~-----~v~~~p~~~~~~~~~~~~~~l~-s~s~-dg--~i~~~~~~~~~ 305 (343)
.|...|. .+.|+|++. .++ ..|+ +| .|++|+.....
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~----------~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGN----------SFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSS----------EEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCceEccCcCCCceEcCCCC----------EEEEEEEcCCCceEEEEEECCCCc
Confidence 3444444 788999987 444 5654 44 57888875433
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-11 Score=116.64 Aligned_cols=280 Identities=10% Similarity=-0.021 Sum_probs=160.6
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCee---------EEEcc---CCCe
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRIS---------SLSTS---HQSL 84 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~---------~v~~~---~~~~ 84 (343)
|...|..++|++ +.-++++...+.. + ...||........ .....+...+. ...|+ +++.
T Consensus 22 ~~~~~~~~~~s~----~~~~~~~~~~~~~-~--~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 22 RSGRPACVGAVG----DEVWWVAPRPAEA-G--RATLVRRRADGAE--ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp TCSCCEEEEEET----TEEEEEEEETTTT-T--EEEEEEECTTSCE--EESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred cCCccceeEEcC----CeEEEEecCcccC-C--cEEEEEECCCCCc--ceeCCCCccccccccccCCccceeeeecCCCe
Confidence 567899999998 5555555521211 2 2446664222211 12223333444 44443 4666
Q ss_pred -EEEEcC-CCcEEEEEcc--C-ceeeeeecc-CCccccCeEEEEec--CCEEEEEeCC----------CcEEEEECCC--
Q 019258 85 -VAASTL-SGSLHVLSSA--M-QVLLSVDEN-SGFHVGPISGVDLT--GSECVSVGED----------GRVNLVSVIG-- 144 (343)
Q Consensus 85 -l~~~s~-dg~v~v~~~~--~-~~~~~~~~~-~~~h~~~v~~~~~~--~~~~~s~s~d----------g~v~~wd~~~-- 144 (343)
|+.++. +..|.++++. . .+...+... ...|...+.++.|+ ++.|++++.| ..|.+||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 555543 5566666654 2 332222211 00156678899998 8889988877 5899999987
Q ss_pred ----CceEEEEE-cCCCccceEEEEeCC-CCEEEEEeCC--------CcEEEEEccccCCCC--CeeEEecccCCCCCcc
Q 019258 145 ----GGEFKRVY-DGNGLVGFNCVKWAS-PTEFVTGGFG--------YGLQWWDLRRAGSGG--PVLQFKGNFGSQGKAS 208 (343)
Q Consensus 145 ----~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~t~~~d--------~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~ 208 (343)
+ ....+. ..+. .+..++|+| +..|+.++.+ ..|.+||+.. .+. ....+.... .
T Consensus 173 ~~~~~-~~~~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~--~g~~~~~~~l~~~~--~---- 241 (662)
T 3azo_A 173 AADRS-AVRELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE--DGRFADTRTLLGGP--E---- 241 (662)
T ss_dssp TTCGG-GSEESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT--TSCEEEEEEEEEET--T----
T ss_pred cccCC-ceeEEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC--CCcccccEEeCCCC--C----
Confidence 5 345444 3333 578889999 7778777755 3799999973 131 333443221 1
Q ss_pred cCeEEEEEcCCCCeEEEEEecCC--cEEEEEccCCceeeeeecCCCCcccccCCcccc--------EEEEEEeecCCCCc
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESE--------VWEVQYDCHTKSSN 278 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~--------v~~v~~~p~~~~~~ 278 (343)
..+..+.|+|++. +++++..+| .|.+||+..++ ...+. ..+... +..++|+|++.
T Consensus 242 ~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~-~~~l~----------~~~~~~~~p~w~~~~~~~~~~~~~~--- 306 (662)
T 3azo_A 242 EAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA-ATQLC----------RREEEFAGPLWTPGMRWFAPLANGL--- 306 (662)
T ss_dssp BCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC-EEESS----------CCSSBSSCCCCSTTCCSEEECTTSC---
T ss_pred ceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc-eeecc----------cccccccCccccccCceEeEeCCCE---
Confidence 5689999999998 777888888 56666664432 22222 111111 45788888766
Q ss_pred CCCCCccceEEEecCCeEEEE--ecCC-Cccccccccccccee-eecCCCCCeeEEccCCc--eEEEE
Q 019258 279 ISSSRVLPAMFCSEDGILAVV--EQGE-EPFELLAEPCAINSF-DIDPQNPSDVICSLEWE--SIAIV 340 (343)
Q Consensus 279 ~~~~~~~~l~s~s~dg~i~~~--~~~~-~~~~~~~~~~~i~s~-~~~~~~~~~l~~~~~~~--~i~~~ 340 (343)
.+++++. +.+.+| +... ....+......+.++ +.++ +.-.+++++.+. .|+.+
T Consensus 307 -------~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 307 -------IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp -------EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEE
T ss_pred -------EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEE
Confidence 6777777 887777 5432 232332233456666 6665 223334444443 44444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-11 Score=116.12 Aligned_cols=243 Identities=7% Similarity=0.003 Sum_probs=143.1
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCC--ccccCeEEEEec--CCEEEEEeCC---------CcE
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSG--FHVGPISGVDLT--GSECVSVGED---------GRV 137 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~--~h~~~v~~~~~~--~~~~~s~s~d---------g~v 137 (343)
....++.|+ ++.+++++ ||.|++|++.+++...+..... .+.....++.|+ ++.++.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 456789999 66666665 9999999998666554433211 111223446777 8888888876 556
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCC----cc----
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGK----AS---- 208 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~---- 208 (343)
.+||+.+++ ...+. .+.. .+...+|+| ++.|+.+ .++.|.+||+.. +.. .++.... .... ..
T Consensus 95 ~~~d~~~~~-~~~l~-~~~~-~~~~~~~SPdG~~la~~-~~~~i~~~~~~~---~~~-~~lt~~g-~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 95 DIYDLNKRQ-LITEE-RIPN-NTQWVTWSPVGHKLAYV-WNNDIYVKIEPN---LPS-YRITWTG-KEDIIYNGITDWVY 165 (740)
T ss_dssp EEEETTTTE-ECCSS-CCCT-TEEEEEECSSTTCEEEE-ETTEEEEESSTT---SCC-EECCSCC-BTTTEEESBCCHHH
T ss_pred EEEECCCCc-EEEcc-cCCC-cceeeEECCCCCEEEEE-ECCeEEEEECCC---Cce-EEEcCCC-CccceecCcccccc
Confidence 799999984 44433 3333 699999999 7777766 578999999977 332 2322111 0000 00
Q ss_pred -----cCeEEEEEcCCCCeEEEEEecCC-----------------------------------cEEEEEccC---Cc--e
Q 019258 209 -----GMIHSVDIHPSRKHTCLAGGSSG-----------------------------------TVFAWDLRW---QQ--Q 243 (343)
Q Consensus 209 -----~~i~~v~~~p~~~~~~~sg~~dg-----------------------------------~v~iwd~~~---~~--~ 243 (343)
+....+.|+|+|..++.....++ +|++||+.. +. .
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 11235899999987654433333 356666655 32 1
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec----CCeEEEEecCCCc--------cccccc
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE----DGILAVVEQGEEP--------FELLAE 311 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~----dg~i~~~~~~~~~--------~~~~~~ 311 (343)
...+.. . .....|...+..++|+|++. .++.... +..|++|+..... ..+..+
T Consensus 246 ~~~l~~-~----~~~~~~~~~~~~~~wspdg~----------~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 246 SIQITA-P----ASMLIGDHYLCDVTWATQER----------ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEEECC-C----HHHHTSCEEEEEEEEEETTE----------EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEEecC-C----ccCCCCCeEEEEEEEeCCCe----------EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 112210 0 00013677899999999986 3444432 3368889864322 222212
Q ss_pred --ccccc-----eeeecCCCCCeeE-EccC-C--ceEEEEe
Q 019258 312 --PCAIN-----SFDIDPQNPSDVI-CSLE-W--ESIAIVS 341 (343)
Q Consensus 312 --~~~i~-----s~~~~~~~~~~l~-~~~~-~--~~i~~~~ 341 (343)
...+. +..|+| +|+.++ ..++ + ..|++++
T Consensus 311 ~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp CSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEE
T ss_pred cCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEE
Confidence 23333 788998 567665 5543 3 3566654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-09 Score=94.80 Aligned_cols=248 Identities=10% Similarity=-0.029 Sum_probs=161.6
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCC-------------------CCceeeeeCCCCCCCCCCccC--CCCCCeeE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDAD-------------------SPSLETHSISLPASLTPHSQW--TPPTRISS 76 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~-------------------~~~l~~w~~~~~~~~~~~~~~--~~~~~v~~ 76 (343)
-..|..|++.| +++++++.+.++... .-.|.+|+..... ....+ .+-.....
T Consensus 23 l~~v~~va~d~----~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDS----KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---ILQSSGKNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECT----TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC---EEEEECTTTCSSEEE
T ss_pred cCCceEEEECC----CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe---EEeccCCCccCCceE
Confidence 35699999999 788998887663211 0136677764322 12222 22346789
Q ss_pred EEcc-CCCeEEEEcCCCcEEEEEccCce-eeeeecc------CCccccCeEEEEec---CCEEEEEe-CCCcEEEEECCC
Q 019258 77 LSTS-HQSLVAASTLSGSLHVLSSAMQV-LLSVDEN------SGFHVGPISGVDLT---GSECVSVG-EDGRVNLVSVIG 144 (343)
Q Consensus 77 v~~~-~~~~l~~~s~dg~v~v~~~~~~~-~~~~~~~------~~~h~~~v~~~~~~---~~~~~s~s-~dg~v~~wd~~~ 144 (343)
+++. +++++++...++.|++|+..... .+..... ...+.....+++++ +..+++.+ .++.|++||..
T Consensus 96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~- 174 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS- 174 (329)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-
T ss_pred EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-
Confidence 9998 77888888889999999986331 2221110 01344467888887 56667765 68999999954
Q ss_pred CceEEEEEcCCC---------ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 145 GGEFKRVYDGNG---------LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 145 ~~~~~~~~~~~~---------~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
+. ....+.... ......+++++ +..+++...++.|++||... ++.+..+.... ....+..
T Consensus 175 g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~~~~~~~-----~~~~~~~ 245 (329)
T 3fvz_A 175 GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVREIKHAS-----FGRNVFA 245 (329)
T ss_dssp SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECCTT-----TTTCEEE
T ss_pred CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEEEEeccc-----cCCCcce
Confidence 43 333332111 12378999988 34556666699999999976 66666664321 1155889
Q ss_pred EEEcCCCCeEEEEE-------ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 214 VDIHPSRKHTCLAG-------GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 214 v~~~p~~~~~~~sg-------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
++++| + .++.+. ..+.+|++||+.+++....+. .. ..+......|+++|++. .
T Consensus 246 ~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-~~-------~~~~~~p~~ia~~~dG~----------l 305 (329)
T 3fvz_A 246 ISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-PV-------RKHFDMPHDIVASEDGT----------V 305 (329)
T ss_dssp EEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-CS-------SSCCSSEEEEEECTTSE----------E
T ss_pred eeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-CC-------CCccCCeeEEEECCCCC----------E
Confidence 99999 3 233332 345589999998765443331 11 24566789999999985 7
Q ss_pred eEEEecCCeEEEEecC
Q 019258 287 AMFCSEDGILAVVEQG 302 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~ 302 (343)
+++.+.+++|+.|+..
T Consensus 306 yvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEESSSCCEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 8888999999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-10 Score=105.06 Aligned_cols=227 Identities=12% Similarity=-0.002 Sum_probs=137.0
Q ss_pred EEcc-CCCeEEEEcC-CCc--EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 77 LSTS-HQSLVAASTL-SGS--LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 77 v~~~-~~~~l~~~s~-dg~--v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
.+|+ +++.|+.++. +|. |.+|++...+...+.. .|...+..+.|+ ++.|+.++.++.|.+||+.+++ ...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE---GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-ENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC---SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-EEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee---CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-cee
Confidence 7788 8888888877 674 7777776555443332 344444455677 8899999999999999999874 444
Q ss_pred EEcCCCccceEEEE--eCC-CCEEEEE----------------------eCCCcEEEEEccccCCCCCeeEEecccCCCC
Q 019258 151 VYDGNGLVGFNCVK--WAS-PTEFVTG----------------------GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQG 205 (343)
Q Consensus 151 ~~~~~~~~~v~~~~--~~~-~~~l~t~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 205 (343)
+...+.. .+.... +++ +..++.. ..+..|.+||+.. ++ ...+....
T Consensus 117 ~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~-~~~l~~~~---- 187 (388)
T 3pe7_A 117 VYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GE-STVILQEN---- 187 (388)
T ss_dssp EEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CC-EEEEEEES----
T ss_pred eeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC---Cc-eEEeecCC----
Confidence 4444433 233333 366 4444432 2357899999987 43 44444332
Q ss_pred CcccCeEEEEEcC-CCCeEEEEEec-----CCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCc
Q 019258 206 KASGMIHSVDIHP-SRKHTCLAGGS-----SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSN 278 (343)
Q Consensus 206 ~~~~~i~~v~~~p-~~~~~~~sg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~ 278 (343)
..+..++|+| ++..++.+... +..|.++|+... ....+. ..+. ..+..+.|+|++.
T Consensus 188 ---~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~----------~~~~~~~~~~~~~spdg~--- 250 (388)
T 3pe7_A 188 ---QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVK----------THAEGESCTHEFWVPDGS--- 250 (388)
T ss_dssp ---SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESC----------CCCTTEEEEEEEECTTSS---
T ss_pred ---ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEee----------eCCCCcccccceECCCCC---
Confidence 5689999999 88765444332 337888887653 223322 1122 3578899999988
Q ss_pred CCCCCccceEEEec-CC----eEEEEecCCCccccccc-cc------ccceeeecCCCCCeeEEc---------cCCceE
Q 019258 279 ISSSRVLPAMFCSE-DG----ILAVVEQGEEPFELLAE-PC------AINSFDIDPQNPSDVICS---------LEWESI 337 (343)
Q Consensus 279 ~~~~~~~~l~s~s~-dg----~i~~~~~~~~~~~~~~~-~~------~i~s~~~~~~~~~~l~~~---------~~~~~i 337 (343)
.|+..+. ++ .|++|+........+.. +. ......|+| +|+.|+.. ..+..|
T Consensus 251 -------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 -------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp -------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-EECCC------------CCCCEE
T ss_pred -------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEE
Confidence 4544433 22 39999975443222222 11 133446787 45777654 335578
Q ss_pred EEEe
Q 019258 338 AIVS 341 (343)
Q Consensus 338 ~~~~ 341 (343)
++|+
T Consensus 323 ~~~d 326 (388)
T 3pe7_A 323 YVFN 326 (388)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-10 Score=109.63 Aligned_cols=240 Identities=13% Similarity=0.041 Sum_probs=141.7
Q ss_pred eEEec--CCCCCCCCe-EEEEeecCCCCCCceeeeeCC--CCCCCCCCccCC---CCCCeeEEEcc-CCCeEEEEcCC--
Q 019258 23 AVRWL--PPLSPLSKL-AVLAIYDTDADSPSLETHSIS--LPASLTPHSQWT---PPTRISSLSTS-HQSLVAASTLS-- 91 (343)
Q Consensus 23 ~v~w~--p~~~~~~~~-l~t~s~D~~~~~~~l~~w~~~--~~~~~~~~~~~~---~~~~v~~v~~~-~~~~l~~~s~d-- 91 (343)
..+|+ | +++. |+.++.. . ..|+++++. .......+.... +...+.+++|+ +++.|+.++.+
T Consensus 81 ~~~~~~SP----Dg~~~la~~~~~-~---~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 152 (662)
T 3azo_A 81 PWAGVPRP----AGGPLLVFTHFG-D---QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT 152 (662)
T ss_dssp CEEEECCS----SSSCEEEEEBTT-T---CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred cceeeeec----CCCeEEEEEECC-C---CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc
Confidence 56677 6 7887 7765433 2 246677764 101122222222 45678899999 88889888876
Q ss_pred --------CcEEEEEccC------ceeeeeeccCCccccCeEEEEec--CCEEEEEeCC--------CcEEEEECC-CC-
Q 019258 92 --------GSLHVLSSAM------QVLLSVDENSGFHVGPISGVDLT--GSECVSVGED--------GRVNLVSVI-GG- 145 (343)
Q Consensus 92 --------g~v~v~~~~~------~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d--------g~v~~wd~~-~~- 145 (343)
..|++|++.. .+...+.. .+...+..+.|+ |+.|+.++.+ ..|.+||+. ++
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSEESSC---SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCceeEEEe---cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5889999875 33322220 234567778888 8888877755 379999998 45
Q ss_pred -ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC--cEEEEEccccCCCCCeeEEecccCCCCCccc---CeEEEEEcC
Q 019258 146 -GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY--GLQWWDLRRAGSGGPVLQFKGNFGSQGKASG---MIHSVDIHP 218 (343)
Q Consensus 146 -~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~p 218 (343)
.....+...+.. .+..+.|+| +..++++..++ .|.+||+.. ++ ...+....... .... .+..++|+|
T Consensus 230 ~~~~~~l~~~~~~-~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~---~~-~~~l~~~~~~~-~~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 230 FADTRTLLGGPEE-AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT---GA-ATQLCRREEEF-AGPLWTPGMRWFAPLA 303 (662)
T ss_dssp EEEEEEEEEETTB-CEEEEEECTTSCEEEEECTTSSCEEEEECTTT---CC-EEESSCCSSBS-SCCCCSTTCCSEEECT
T ss_pred ccccEEeCCCCCc-eEcceEECCCCeEEEEECCCCCeEEEEEECCC---Cc-eeecccccccc-cCccccccCceEeEeC
Confidence 134555544433 689999999 66777777788 555566544 22 33332221100 0000 156788988
Q ss_pred CCCeEEEEEecCCcEEEE--EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC--
Q 019258 219 SRKHTCLAGGSSGTVFAW--DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG-- 294 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg-- 294 (343)
++. ++++++. +.+++| |+..+ . ...+ ..|...+..+. ++++.. +.+++.+.+.
T Consensus 304 ~~~-~~~~~~~-~~~~l~~~d~~~~-~-~~~l----------~~~~~~~~~~~-s~~~~~--------~~~~~~~~~~~~ 360 (662)
T 3azo_A 304 NGL-IAVVHGK-GAAVLGILDPESG-E-LVDA----------AGPWTEWAATL-TVSGTR--------AVGVAASPRTAY 360 (662)
T ss_dssp TSC-EEEEEBS-SSCEEEEEETTTT-E-EEEC----------CSSCCEEEEEE-EEETTE--------EEEEEEETTEEE
T ss_pred CCE-EEEEEEc-CccEEEEEECCCC-c-EEEe----------cCCCCeEEEEE-ecCCCE--------EEEEEcCCCCCC
Confidence 875 6677788 999999 54432 2 2333 34566676661 444442 0334445554
Q ss_pred eEEEEecC
Q 019258 295 ILAVVEQG 302 (343)
Q Consensus 295 ~i~~~~~~ 302 (343)
.|+.++..
T Consensus 361 ~i~~~d~~ 368 (662)
T 3azo_A 361 EVVELDTV 368 (662)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 46666643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-09 Score=94.70 Aligned_cols=254 Identities=7% Similarity=-0.081 Sum_probs=157.1
Q ss_pred ceeeeeCCCCCCCCCCc----cCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-
Q 019258 50 SLETHSISLPASLTPHS----QWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT- 124 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~----~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 124 (343)
+|.++|.........+. ..........+.+.++.++++...++.|.+||..+.+.+.... .......+.++
T Consensus 18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~ 93 (328)
T 3dsm_A 18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLS 93 (328)
T ss_dssp EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEE
T ss_pred eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeC
Confidence 56688875432211110 0122234667777666667777778999999998665544332 23456788885
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceEEEEEcCCCc----cceEEEEeCCCCEEEEEe-CCCcEEEEEccccCCCCCeeEEe
Q 019258 125 GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGNGL----VGFNCVKWASPTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFK 198 (343)
Q Consensus 125 ~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~ 198 (343)
+..+..+. .++.|.+||..+++ +...+..... .....+++.....+++.. .++.|.++|+.+ ++....+.
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t---~~~~~~i~ 169 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYE-ITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET---DKVVDELT 169 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTE-EEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT---TEEEEEEE
T ss_pred CCeEEEEECCCCeEEEEECCCCe-EEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC---CeEEEEEE
Confidence 33554444 89999999999885 4433332220 024455553344444443 489999999988 55555554
Q ss_pred cccCCCCCcccCeEEEEEcCCCCeEEEEEecC----------CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEE
Q 019258 199 GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS----------GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEV 268 (343)
Q Consensus 199 ~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 268 (343)
.. .....+.++|++. +++++..+ +.|.++|.++.+....+. .........+
T Consensus 170 ~g--------~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----------~~~g~~p~~l 230 (328)
T 3dsm_A 170 IG--------IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----------FKLGDWPSEV 230 (328)
T ss_dssp CS--------SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----------CCTTCCCEEE
T ss_pred cC--------CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----------cCCCCCceeE
Confidence 32 2356788999886 55555444 789999998754332322 1112357899
Q ss_pred EEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc---ccccc-ccccceeeecCCCCCeeEEc----cCCceEEEE
Q 019258 269 QYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF---ELLAE-PCAINSFDIDPQNPSDVICS----LEWESIAIV 340 (343)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~---~~~~~-~~~i~s~~~~~~~~~~l~~~----~~~~~i~~~ 340 (343)
+|+|++. .++.+.. .|++|+...... .+... ......++++|+++...++. ..++.|++|
T Consensus 231 a~~~d~~----------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 231 QLNGTRD----------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp EECTTSC----------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred EEecCCC----------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 9999877 4655544 899998753322 11221 24578899998666777776 567899988
Q ss_pred eC
Q 019258 341 SR 342 (343)
Q Consensus 341 ~~ 342 (343)
+.
T Consensus 299 d~ 300 (328)
T 3dsm_A 299 SP 300 (328)
T ss_dssp CT
T ss_pred CC
Confidence 63
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-10 Score=94.02 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=148.9
Q ss_pred CeeEEEcc-CCCeEE-EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 73 RISSLSTS-HQSLVA-ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~-~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
...++++. ++.+++ +.+.++.|.+|+......... . ..+...+.++.+. +..+++.. ++.|..||..... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~--~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-P--FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-Q 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-C--CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-e--eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-E
Confidence 67788888 666555 436788999998753322111 1 1233456778887 56555555 8899999987753 3
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
... .......+.++++.+ +..+++...++.|.+||... .......... . ....+++++|++. ++++.
T Consensus 100 ~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~~~~~~~-----~--~~p~~i~~~~~g~-l~v~~ 167 (270)
T 1rwi_B 100 TVL-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQTVLPFTG-----L--NDPDGVAVDNSGN-VYVTD 167 (270)
T ss_dssp EEC-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCEECCCCS-----C--CSCCCEEECTTCC-EEEEE
T ss_pred eee-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeEeecccc-----C--CCceeEEEeCCCC-EEEEE
Confidence 222 222222588999998 66666666788999997644 2222111111 0 3478899999885 66777
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE 307 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~ 307 (343)
..++.|.+||........ .. ..+...+..|++++++. ..++...++.|+.|+.......
T Consensus 168 ~~~~~i~~~~~~~~~~~~-~~----------~~~~~~p~~i~~d~~g~----------l~v~~~~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQVV-LP----------FTDITAPWGIAVDEAGT----------VYVTEHNTNQVVKLLAGSTTST 226 (270)
T ss_dssp GGGTEEEEECTTTCCEEE-CC----------CSSCCSEEEEEECTTCC----------EEEEETTTSCEEEECTTCSCCE
T ss_pred CCCCEEEEEecCCCceEe-ec----------ccCCCCceEEEECCCCC----------EEEEECCCCcEEEEcCCCCcce
Confidence 778899999987643222 11 12235678999999874 5666677889999987644322
Q ss_pred ccc-cc-cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LLA-EP-CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~~-~~-~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
... .. ..+.++++++ +|...++...++.|++++.
T Consensus 227 ~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 227 VLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp ECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred eeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcC
Confidence 222 22 4578999998 4678888888899999875
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-10 Score=95.22 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=146.2
Q ss_pred CCCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q 019258 71 PTRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
.....++.|. +++ +++++..++.|..|+.... ..... .+...+.++.++ +..+++...++.|.+||..+++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence 3456788998 666 7888889999999998754 22221 245678899997 6776666677899999997764
Q ss_pred eEEEEEcCCC---ccceEEEEeCC-CCEEEEEeCC---------------CcEEEEEccccCCCCCeeEEecccCCCCCc
Q 019258 147 EFKRVYDGNG---LVGFNCVKWAS-PTEFVTGGFG---------------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKA 207 (343)
Q Consensus 147 ~~~~~~~~~~---~~~v~~~~~~~-~~~l~t~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (343)
...+..... ...+..+++.+ +..+++.+.. +.-.+|.+.. ...+..+....
T Consensus 102 -~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~------ 171 (296)
T 3e5z_A 102 -WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP---DGTLSAPIRDR------ 171 (296)
T ss_dssp -EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT---TSCEEEEECCC------
T ss_pred -EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC---CCCEEEeecCC------
Confidence 333322111 11466789999 6666653211 1124454443 23333333222
Q ss_pred ccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee---eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCc
Q 019258 208 SGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS---IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRV 284 (343)
Q Consensus 208 ~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~ 284 (343)
.....++|+|++..+ ++.+.++.|.+||+...... .... ..+...+..|++++++.
T Consensus 172 -~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~----------~~~~~~p~~i~~d~~G~--------- 230 (296)
T 3e5z_A 172 -VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF----------TVEPGKTDGLRVDAGGL--------- 230 (296)
T ss_dssp -SSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE----------CCSSSCCCSEEEBTTSC---------
T ss_pred -CCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe----------eCCCCCCCeEEECCCCC---------
Confidence 557899999998776 78888899999998622221 1111 11344567899998875
Q ss_pred cceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 285 LPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 285 ~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
++.+. ++.|.+|+...+....+..+..+.++.+.+.+++.|..++.+ .++.+
T Consensus 231 --l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~ 282 (296)
T 3e5z_A 231 --IWASA-GDGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSI 282 (296)
T ss_dssp --EEEEE-TTEEEEECTTSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEE
T ss_pred --EEEEc-CCeEEEECCCCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEE
Confidence 34444 889999998755444444333388888853356777777755 44443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-08 Score=85.70 Aligned_cols=273 Identities=7% Similarity=-0.043 Sum_probs=169.0
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
...+.+|+..| +++++++...++ .|..|+.. .. ............+.++.+. ++.++++...++.|..
T Consensus 14 ~~~~~~i~~d~----~g~l~v~~~~~~-----~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 14 DTGPYGITVSD----KGKVWITQHKAN-----MISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp SCCEEEEEECT----TSCEEEEETTTT-----EEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCccceEECC----CCCEEEEecCCC-----cEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 35789999999 777777654343 36677764 11 1111111234678899998 6677777666888999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t 173 (343)
|+... . +...... .....+.++.+. +..+++...++.|..||. +++ ............+..+.+.+ +..+++
T Consensus 83 ~~~~g-~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 83 ITKKG-I-IKEYTLP-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-IREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp ECTTS-C-EEEEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred ECCCC-c-EEEEeCC-CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-EEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 98752 2 2111111 133467888887 666677777889999998 443 33332222222588999998 556665
Q ss_pred EeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 174 GGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
...++.|..||. . ++ +..+..... . ..+..+++++++. ++++...++.|..||. ++... .+..
T Consensus 158 ~~~~~~i~~~~~-~---g~-~~~~~~~~~-~----~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~-~~~~---- 220 (299)
T 2z2n_A 158 ENQNNAIGRITE-S---GD-ITEFKIPTP-A----SGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT-EFKI---- 220 (299)
T ss_dssp ETTTTEEEEECT-T---CC-EEEEECSST-T----CCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE-EEEC----
T ss_pred eCCCCEEEEEcC-C---Cc-EEEeeCCCC-C----CcceeEEECCCCC-EEEEccCCceEEEECC-CCcEE-EEEC----
Confidence 556789999998 5 33 223321110 1 4588999999875 5666666889999998 54322 2210
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccc-cc-cccccceeeecCCCCCeeEEc
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFEL-LA-EPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~-~~-~~~~i~s~~~~~~~~~~l~~~ 331 (343)
..+...+.++++++++. ..++...++.|..|+........ .. ....+.++.+ + ++...++.
T Consensus 221 -----~~~~~~~~~i~~~~~g~----------l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 221 -----PTPNARPHAITAGAGID----------LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-D-GETIWFAM 283 (299)
T ss_dssp -----SSTTCCEEEEEECSTTC----------EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-C-SSCEEEEE
T ss_pred -----CCCCCCceeEEECCCCC----------EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-c-CCCEEEEe
Confidence 22446788999998865 44555578899999874322222 11 1245788888 5 55666665
Q ss_pred cCCceEEEEe
Q 019258 332 LEWESIAIVS 341 (343)
Q Consensus 332 ~~~~~i~~~~ 341 (343)
. .+.+..++
T Consensus 284 ~-~~~l~~~~ 292 (299)
T 2z2n_A 284 E-CDKIGKLT 292 (299)
T ss_dssp T-TTEEEEEE
T ss_pred c-CCcEEEEE
Confidence 5 45666554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-10 Score=93.80 Aligned_cols=236 Identities=8% Similarity=-0.036 Sum_probs=150.2
Q ss_pred ceeeEEecCCCCCCCCeEE-EEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAV-LAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~-t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
....|++.| ++++++ +.+.++ .|..|+....... .........+.++++. ++.++++.. ++.|.+|
T Consensus 25 ~p~~i~~~~----~g~l~v~~~~~~~-----~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDS----AGNVYVTSEGMYG-----RVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTL 92 (270)
T ss_dssp CEEEEEECT----TCCEEEEECSSSC-----EEEEECC-----E--ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEE
T ss_pred CccceEECC----CCCEEEEccCCCC-----cEEEecCCCcccc--eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEE
Confidence 788999999 777777 434443 3667776332111 1112223467889998 666555555 8899999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEE
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~ 174 (343)
+......... . ........++.+. +..+++...++.|..|+..+... ... .......+.++++.+ +..+++.
T Consensus 93 d~~~~~~~~~-~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 93 AAGSNNQTVL-P--FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVL-PFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CTTCSCCEEC-C--CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EEC-CCCSCCSCCCEEECTTCCEEEEE
T ss_pred eCCCceEeee-e--cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-Eee-ccccCCCceeEEEeCCCCEEEEE
Confidence 8764322211 1 1123467888887 67777777788999998665432 211 111112478889998 6666666
Q ss_pred eCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCc
Q 019258 175 GFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGE 254 (343)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 254 (343)
..++.|.+||... .. ........ . ..+.+++++|++ .++++...++.|.+||...... ....
T Consensus 168 ~~~~~i~~~~~~~---~~-~~~~~~~~----~--~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-~~~~------ 229 (270)
T 1rwi_B 168 TDNNRVVKLEAES---NN-QVVLPFTD----I--TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-TVLP------ 229 (270)
T ss_dssp GGGTEEEEECTTT---CC-EEECCCSS----C--CSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC-EECC------
T ss_pred CCCCEEEEEecCC---Cc-eEeecccC----C--CCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc-eeec------
Confidence 6688999999866 22 22211111 1 458899999988 5777777788999999865322 2211
Q ss_pred ccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC
Q 019258 255 AVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE 304 (343)
Q Consensus 255 ~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~ 304 (343)
..+...+.+++++|++. .+++.+.+++|++++...+
T Consensus 230 ----~~~~~~p~~i~~~~~g~----------l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 230 ----FTGLNTPLAVAVDSDRT----------VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ----CCSCSCEEEEEECTTCC----------EEEEEGGGTEEEEECCCGG
T ss_pred ----cCCCCCceeEEECCCCC----------EEEEECCCCEEEEEcCCCc
Confidence 12335688999999876 6788889999999987643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-09 Score=102.79 Aligned_cols=275 Identities=8% Similarity=-0.099 Sum_probs=162.6
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC---ccC--CCCCCeeEEEcc-CCCeEEEEcCCC-----cEEEEEccC
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPH---SQW--TPPTRISSLSTS-HQSLVAASTLSG-----SLHVLSSAM 101 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~---~~~--~~~~~v~~v~~~-~~~~l~~~s~dg-----~v~v~~~~~ 101 (343)
++++++-...+.......|+..+..... ...+ ..+ .+...+..++|+ ++++|+.++.++ .|++||+..
T Consensus 82 dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 82 KGKRYFYFYNTGLQNQRVLYVQDSLEGE-ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp ETTEEEEEEECSSCSSCEEEEESSTTSC-CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred ECCEEEEEEEcCCceEEEEEEEcCCCCC-cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7877776655543222233444332211 1111 011 223357889999 888887776533 899999986
Q ss_pred ceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCc----------------EEEEECCCCceE-EEEEcCCC-ccceE
Q 019258 102 QVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGR----------------VNLVSVIGGGEF-KRVYDGNG-LVGFN 161 (343)
Q Consensus 102 ~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~----------------v~~wd~~~~~~~-~~~~~~~~-~~~v~ 161 (343)
++...... ....+.++.|+ ++.|+.++.++. |.+|++.++... ..++.... ...+.
T Consensus 161 g~~~~~~~----~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~ 236 (710)
T 2xdw_A 161 AKELPDVL----ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG 236 (710)
T ss_dssp TEEEEEEE----EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred CCCCcccc----cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE
Confidence 65543221 11235678898 788988888766 999999876421 23333221 22477
Q ss_pred EEEeCC-CCEEEEEeC-----CCcEEEEEccccC----CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-
Q 019258 162 CVKWAS-PTEFVTGGF-----GYGLQWWDLRRAG----SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS- 230 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~-----d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d- 230 (343)
.+.|+| +..++.++. +..|.+||+.... ....+..+..+. ..+.. .|+|++..+++.+..+
T Consensus 237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-------~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-------EGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-------SSCEE-EEEEETTEEEEEECTTC
T ss_pred EEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-------CcEEE-EEeccCCEEEEEECCCC
Confidence 899999 777776654 6789999986500 011345555443 23333 4778887776665543
Q ss_pred --CcEEEEEccCCce--eeeeecCCCCcccccCCcc-ccEEEEEEeecCCCCcCCCCCccceEEEecCCe--EEEEec-C
Q 019258 231 --GTVFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSE-SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--LAVVEQ-G 302 (343)
Q Consensus 231 --g~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--i~~~~~-~ 302 (343)
+.|.+||+..+.. ...+. ..+. ..+..+.|++.+. .+++...||. |++|+. .
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~----------lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVLV----------PEHEKDVLEWVACVRSNF----------LVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEEE----------CCCSSCEEEEEEEETTTE----------EEEEEEETTEEEEEEEETTT
T ss_pred CCCEEEEEeCCCCCcccceecc----------CCCCCCeEEEEEEEcCCE----------EEEEEEECCEEEEEEEECCC
Confidence 3699999977531 23333 1222 3688899985544 6788888885 566775 2
Q ss_pred CC-cccccccccccceeeecCCCCCeeEEcc----CCceEEEEe
Q 019258 303 EE-PFELLAEPCAINSFDIDPQNPSDVICSL----EWESIAIVS 341 (343)
Q Consensus 303 ~~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~----~~~~i~~~~ 341 (343)
.. ...+......+.++++++ ++..++.+. ..+.++.++
T Consensus 369 g~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 369 GALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp CCEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEE
T ss_pred CCEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEE
Confidence 22 223222345678888888 445555332 235777775
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-09 Score=94.38 Aligned_cols=239 Identities=8% Similarity=-0.020 Sum_probs=146.9
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc-CCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST-LSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s-~dg~v~v 96 (343)
.....|.... ++++++...++ +|.++|.... +.+..++.......++++ ++ .++++. .++.|.+
T Consensus 44 ~~~~~i~~~~-----~~lyv~~~~~~-----~v~viD~~t~---~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~ 109 (328)
T 3dsm_A 44 DVAQSMVIRD-----GIGWIVVNNSH-----VIFAIDINTF---KEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFI 109 (328)
T ss_dssp SCEEEEEEET-----TEEEEEEGGGT-----EEEEEETTTC---CEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEE
T ss_pred ccceEEEEEC-----CEEEEEEcCCC-----EEEEEECccc---EEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEE
Confidence 3455565533 55666655443 4778988542 233344445678899996 55 555555 8999999
Q ss_pred EEccCceeeeeeccCC--ccccCeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 97 LSSAMQVLLSVDENSG--FHVGPISGVDLTGSECVSVG--EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~s~s--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
||..+.+......... ........+.+.++.+..+. .++.|.++|+.+++ ....+.... ....+.+.+ +..+
T Consensus 110 iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~g~--~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 110 INPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-VVDELTIGI--QPTSLVMDKYNKMW 186 (328)
T ss_dssp EETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-EEEEEECSS--CBCCCEECTTSEEE
T ss_pred EECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEcCC--CccceEEcCCCCEE
Confidence 9998655433222111 01112334555655554444 48999999999885 444443322 366788888 4444
Q ss_pred EEEeCC----------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 172 VTGGFG----------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 172 ~t~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+++..+ +.|.++|..+ .+....+....+ .....++++|++..++++. . .|.+||..+.
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~g------~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t~ 254 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKLG------DWPSEVQLNGTRDTLYWIN-N--DIWRMPVEAD 254 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCTT------CCCEEEEECTTSCEEEEES-S--SEEEEETTCS
T ss_pred EEECCCccCCccccCCceEEEEECCC---CeEEEEEecCCC------CCceeEEEecCCCEEEEEc-c--EEEEEECCCC
Confidence 444333 7899999977 454444542211 3578999999887776543 2 8999999775
Q ss_pred ceee-eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE----ecCCeEEEEecCCCc
Q 019258 242 QQSI-VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC----SEDGILAVVEQGEEP 305 (343)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~----s~dg~i~~~~~~~~~ 305 (343)
+... .+. .........++++|++.. ..++. ..+++|.+|+...+.
T Consensus 255 ~~~~~~~~----------~~~~~~p~gi~vdp~~g~---------lyva~~~~y~~~~~V~v~d~~g~~ 304 (328)
T 3dsm_A 255 RVPVRPFL----------EFRDTKYYGLTVNPNNGE---------VYVADAIDYQQQGIVYRYSPQGKL 304 (328)
T ss_dssp SCCSSCSB----------CCCSSCEEEEEECTTTCC---------EEEEECTTSSSEEEEEEECTTCCE
T ss_pred ceeeeeee----------cCCCCceEEEEEcCCCCe---------EEEEcccccccCCEEEEECCCCCE
Confidence 4321 111 112356889999997664 45555 578899999986433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=106.22 Aligned_cols=251 Identities=11% Similarity=-0.087 Sum_probs=152.2
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc-----
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS----- 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~----- 93 (343)
.+..++|+| ++++||-++.........|++|++.+..... ...+. ......+.|+ ++..|+.++.+..
T Consensus 122 ~~~~~~~SP----DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 122 SLGTWAVSW----DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp EEEEEEECT----TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred EEEEEEECC----CCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccC-cccccceEEecCCCEEEEEEecCCCCCcc
Confidence 588999999 8988885544322122468899996543210 01111 1122688999 8888988888776
Q ss_pred --------EEEEEccCce--eeeeeccCCccccCeEEEEec--CCEEEEEeCCC----cEEEEECCCCceEEEEEcCCCc
Q 019258 94 --------LHVLSSAMQV--LLSVDENSGFHVGPISGVDLT--GSECVSVGEDG----RVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 94 --------v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg----~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
|++|++.... ...+.. ...|...+.++.|+ |+.++..+.++ .|.+||..++ ....+.....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~- 272 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-DFRLLVKGVG- 272 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-SCEEEEECSS-
T ss_pred ccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-ceEEeecCCC-
Confidence 9999997543 122222 22355678889998 77887777665 6677766555 3455544333
Q ss_pred cceEEEEeCCCCEEEEEe---CCCcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 158 VGFNCVKWASPTEFVTGG---FGYGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 158 ~~v~~~~~~~~~~l~t~~---~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
.+....+..+..++.+. .++.|.+||+.. +.. ...+..+.. . ..+..++++ +..++++...|+.
T Consensus 273 -~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~~-~----~~l~~~~~~--~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 273 -AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAK---PARASWKEIVPEDS-S----ASLLSVSIV--GGHLSLEYLKDAT 341 (695)
T ss_dssp -CCEEEEEETTEEEEEECTTCTTCEEEEEBTTB---CSGGGCEEEECCCS-S----CEEEEEEEE--TTEEEEEEEETTE
T ss_pred -ceEEEEecCCcEEEEECCCCCCCEEEEEeCCC---CCccCCeEEecCCC-C----CeEEEEEEE--CCEEEEEEEECCE
Confidence 34444555544444443 258899999977 332 344443320 1 457788887 3568889999999
Q ss_pred EEEEEccC-CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe---cCCeEEEEecCCCcccc
Q 019258 233 VFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS---EDGILAVVEQGEEPFEL 308 (343)
Q Consensus 233 v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s---~dg~i~~~~~~~~~~~~ 308 (343)
.++|.+.. +.....+. ..+.+.+..+.++|++.. .+++.+ ..++|++|+......++
T Consensus 342 ~~l~~~~~~g~~~~~l~----------~~~~~~v~~~~~s~d~~~---------l~~~~ss~~~P~~v~~~d~~~g~~~~ 402 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQ----------LPGVGAASNLMGLEDLDD---------AYYVFTSFTTPRQIYKTSVSTGKSEL 402 (695)
T ss_dssp EEEEEEETTCCEEEECC----------CSSSSEECCCBSCTTCSE---------EEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEEEEEeCCCCeeEEec----------CCCCeEEEEeecCCCCCE---------EEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 88886652 22222221 112567788888887763 333333 34679999875433333
Q ss_pred c
Q 019258 309 L 309 (343)
Q Consensus 309 ~ 309 (343)
+
T Consensus 403 l 403 (695)
T 2bkl_A 403 W 403 (695)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-07 Score=81.50 Aligned_cols=273 Identities=8% Similarity=-0.073 Sum_probs=167.8
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
...+..|...+ ++.++++...++ .|..++.. .. ......-.....+.++.+. ++.++++...++.|..
T Consensus 19 ~~~p~~i~~d~----~g~l~v~~~~~~-----~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSE----DGKVWFTQHKAN-----KISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp TCCEEEEEECT----TSCEEEEETTTT-----EEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCcceeeECC----CCCEEEEcCCCC-----eEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 45788899988 777777665443 35577664 11 1111111223568888888 6666776666888999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t 173 (343)
|+.. .+.... ... .....+.++.+. +..+++...++.|..+|.. ++ ............+.++.+.+ ++.+++
T Consensus 88 ~d~~-g~~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 88 LSKK-GGFTEY-PLP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp ECTT-SCEEEE-ECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred ECCC-CCeEEe-cCC-CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEccCCCCCCCceeEEECCCCCEEEE
Confidence 9876 322211 111 123567888887 6677776668899999987 43 33332222222688999988 665665
Q ss_pred EeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 174 GGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
...++.|..+|. . ++. ..+.... .. ..+..+++++++ .++++...++.|..||. .+.......
T Consensus 163 ~~~~~~i~~~~~-~---g~~-~~~~~~~-~~----~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~----- 225 (300)
T 2qc5_A 163 ENQNNSIGRITN-T---GKL-EEYPLPT-NA----AAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEISEYDI----- 225 (300)
T ss_dssp ETTTTEEEEECT-T---CCE-EEEECSS-TT----CCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEEC-----
T ss_pred ecCCCeEEEECC-C---CcE-EEeeCCC-CC----CCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEEEEEC-----
Confidence 555888999998 4 232 2332211 01 458899999987 46666566778999998 323222111
Q ss_pred cccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccc-cc-cccccceeeecCCCCCeeEEc
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFEL-LA-EPCAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~-~~-~~~~i~s~~~~~~~~~~l~~~ 331 (343)
..+...+.+|++++++. ..++...++.|..++........ .. ....+.++.+++ +|...++.
T Consensus 226 -----~~~~~~~~~i~~d~~g~----------l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~ 289 (300)
T 2qc5_A 226 -----PTPNARPHAITAGKNSE----------IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK-DGSVWFAL 289 (300)
T ss_dssp -----SSTTCCEEEEEECSTTC----------EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECT-TSCEEEEC
T ss_pred -----CCCCCCceEEEECCCCC----------EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCC-CCCEEEEc
Confidence 22345688999998865 44555567899999874332222 11 134578899988 45666655
Q ss_pred cCCceEEEEe
Q 019258 332 LEWESIAIVS 341 (343)
Q Consensus 332 ~~~~~i~~~~ 341 (343)
. . .|..++
T Consensus 290 ~-~-~i~~~~ 297 (300)
T 2qc5_A 290 K-C-KIGKLN 297 (300)
T ss_dssp S-S-EEEEEE
T ss_pred c-C-ceEEeC
Confidence 5 5 776664
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-09 Score=92.17 Aligned_cols=179 Identities=12% Similarity=0.013 Sum_probs=124.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCC--------CCCCCCccCCCCCCeeEEEccCCCeEEEEcCC
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLP--------ASLTPHSQWTPPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~--------~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d 91 (343)
.++.+++++ ...++++|+.| .+.+|++.+- ....+....++++ |+.|+| ++..|+++ .+
T Consensus 39 ~~nlLais~----~~gll~a~~~~------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISN----SKSLFVAASGS------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TR 105 (388)
T ss_dssp CCBCEEEET----TTTEEEEEETT------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ES
T ss_pred cccEEEEcC----CCCEEEEeCCC------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cC
Confidence 699999999 78889999887 3678886321 1122333445677 999999 88999998 88
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEE
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEF 171 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 171 (343)
+.|++|++......... ..|..++.++.+....++++..||.|.+||+.++. .... .. .|+|++|+|.. +
T Consensus 106 ~~l~v~dv~sl~~~~~~---~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~-~~~~----~~-~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 106 NALYSLDLEELSEFRTV---TSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS-TKQL----AQ-NVTSFDVTNSQ-L 175 (388)
T ss_dssp SEEEEEESSSTTCEEEE---EECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEEE----EE-SEEEEEECSSE-E
T ss_pred CcEEEEEchhhhccCcc---ceeecceeeEEecCCCEEEEECCCCEEEEEccCCc-cccc----cC-CceEEEEcCCc-e
Confidence 99999999743322211 13566788888775569999999999999998764 3322 12 69999999955 7
Q ss_pred EEEeCCCcEEEEEccccCCCCC--eeEEeccc--CCCCCcccCeEEEEEcCCCCeEE
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGP--VLQFKGNF--GSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~--~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
+.|..||++++|+... ... ...+.... .+...+...|.+|.|.+++..++
T Consensus 176 ~vg~~dg~i~~~~~~~---~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRN---GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp EEEETTSCEEEEEEET---TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred EEEEcCCcEEEEcCCC---ccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 7899999999998866 221 22341100 00000116699999999865443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-09 Score=103.91 Aligned_cols=244 Identities=11% Similarity=-0.009 Sum_probs=153.2
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc-----
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS----- 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~----- 93 (343)
.+..++|+| ++++|+.++.++......|++|++.+.... ........+.++.|+ +++.|+.++.++.
T Consensus 126 ~~~~~~~SP----Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~---~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 126 ALRGYAFSE----DGEYFAYGLSASGSDWVTIKFMKVDGAKEL---PDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEEECT----TSSEEEEEEEETTCSCEEEEEEETTTTEEE---EEEEEEECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred EEEEEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCC---cccccCcccceEEEEeCCCEEEEEEECCcccccc
Confidence 578899999 899998877654222235889999653321 111112236789999 8888888887765
Q ss_pred -----------EEEEEccCcee--eeeeccCCccccCeEEEEec--CCEEEEEeC-----CCcEEEEECCC------Cc-
Q 019258 94 -----------LHVLSSAMQVL--LSVDENSGFHVGPISGVDLT--GSECVSVGE-----DGRVNLVSVIG------GG- 146 (343)
Q Consensus 94 -----------v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-----dg~v~~wd~~~------~~- 146 (343)
|++|++...+. ..+... ..|...+..+.|+ ++.++..+. +..|.+||+.+ +.
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred ccccccCCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999875431 222221 2345567888898 777776654 56899999976 42
Q ss_pred eEEEEEcCCCccceEEEEeCC-CCEEEEEeCC----CcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG----YGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d----~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
....+..... .+.. .|++ +..|+..+.. ..|.+||+.. +. ....+..+.. . ..+..+++.+.
T Consensus 278 ~~~~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~~-~----~~~~~~~~~~~ 346 (710)
T 2xdw_A 278 KWVKLIDNFE--GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD---PEESKWKVLVPEHE-K----DVLEWVACVRS 346 (710)
T ss_dssp CCEEEECSSS--SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS---CCGGGCEEEECCCS-S----CEEEEEEEETT
T ss_pred ceEEeeCCCC--cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC---CCcccceeccCCCC-C----CeEEEEEEEcC
Confidence 2444443333 2333 3555 6666655543 3699999876 33 2344544321 0 25788898865
Q ss_pred CCeEEEEEecCCc--EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe---cCC
Q 019258 220 RKHTCLAGGSSGT--VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS---EDG 294 (343)
Q Consensus 220 ~~~~~~sg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s---~dg 294 (343)
..++++...|+. |.+||+..+..... + ..+.+.+..+.++|++.. .+++.+ ..+
T Consensus 347 -~~lv~~~~~~g~~~l~~~~~~~g~~~~~-l----------~~~~~~v~~~~~s~d~~~---------l~~~~ss~~~P~ 405 (710)
T 2xdw_A 347 -NFLVLCYLHDVKNTLQLHDLATGALLKI-F----------PLEVGSVVGYSGQKKDTE---------IFYQFTSFLSPG 405 (710)
T ss_dssp -TEEEEEEEETTEEEEEEEETTTCCEEEE-E----------CCCSSEEEEEECCTTCSE---------EEEEEECSSCCC
T ss_pred -CEEEEEEEECCEEEEEEEECCCCCEEEe-c----------CCCCceEEEEecCCCCCE---------EEEEEeCCCCCC
Confidence 467888888885 56667655443223 3 335677889999987763 333433 346
Q ss_pred eEEEEecCC
Q 019258 295 ILAVVEQGE 303 (343)
Q Consensus 295 ~i~~~~~~~ 303 (343)
+|+.|+...
T Consensus 406 ~i~~~d~~t 414 (710)
T 2xdw_A 406 IIYHCDLTK 414 (710)
T ss_dssp EEEEEETTS
T ss_pred EEEEEECCC
Confidence 899998653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-10 Score=99.74 Aligned_cols=176 Identities=16% Similarity=0.045 Sum_probs=120.0
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCce--------eeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQV--------LLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~ 143 (343)
.++.++++ ...++++|+.++ +.+|++...+ ..... ....+.+ |+.+.|++..++.+ .++.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence 68899998 778888888875 6669876222 01110 0112445 99999977777777 88999999998
Q ss_pred CCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
+....... ..+.. .+.++.+.+++ +++++.||.|.+||+.. +... .+. ..|.|++|+|+|
T Consensus 115 sl~~~~~~-~~~~~-~v~~i~~~~p~-~av~~~dG~L~v~dl~~---~~~~-~~~----------~~Vs~v~WSpkG--- 174 (388)
T 1xip_A 115 ELSEFRTV-TSFEK-PVFQLKNVNNT-LVILNSVNDLSALDLRT---KSTK-QLA----------QNVTSFDVTNSQ--- 174 (388)
T ss_dssp STTCEEEE-EECSS-CEEEEEECSSE-EEEEETTSEEEEEETTT---CCEE-EEE----------ESEEEEEECSSE---
T ss_pred hhhccCcc-ceeec-ceeeEEecCCC-EEEEECCCCEEEEEccC---Cccc-ccc----------CCceEEEEcCCc---
Confidence 75433333 33333 68888777654 88899999999999987 3332 222 569999999987
Q ss_pred EEEEecCCcEEEEEccCCce--eeeeecCCCCccc-ccCCccccEEEEEEeecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQ--SIVLSGVGTGEAV-THSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~ 275 (343)
++.|..||++++|+....+. ...+.. . ... .+.+|...|.+|.|.+++.
T Consensus 175 ~~vg~~dg~i~~~~~~~~~~~~k~~I~~-P--p~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNGEMEKQFEFSL-P--SELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECC-C--HHHHTSCTTTSEEEEEEESSSSE
T ss_pred eEEEEcCCcEEEEcCCCccccccceecC-C--cccccccCCCeeEEEEEEecCCe
Confidence 46799999999998876542 112210 0 000 0013678899999998766
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-09 Score=93.28 Aligned_cols=256 Identities=12% Similarity=0.043 Sum_probs=152.8
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeec--CCC--CCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYD--TDA--DSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D--~~~--~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+-....+...++ +++.++..... ... ....|++|++...... .+ ..+..+.|+ +++.|+..+
T Consensus 11 l~~~~~~~~~~~------dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l---~~~~~~~~SpDg~~la~~~ 77 (347)
T 2gop_A 11 FAKFAYLSDPRT------KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI---ENATMPRISPDGKKIAFMR 77 (347)
T ss_dssp CCCSCEEEEEEE------ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE---ESCEEEEECTTSSEEEEEE
T ss_pred ceeeEEcccceE------CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec---ccCCCeEECCCCCEEEEEE
Confidence 334456777777 35566544321 110 1234889998653211 12 568889999 888888776
Q ss_pred CC---Cc--EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---------------------------C
Q 019258 90 LS---GS--LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---------------------------G 135 (343)
Q Consensus 90 ~d---g~--v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---------------------------g 135 (343)
.+ +. |.+|++..++...+.. +.. +..+.|+ ++.|+.++.+ .
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 78 ANEEKKVSEIWVADLETLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEE
T ss_pred eccCCCcceEEEEECCCCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 53 34 6666776554443332 223 8899998 7778777632 5
Q ss_pred cEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCC-------cEEEEEccccCCCCCeeEEecccCCCCCcc
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGY-------GLQWWDLRRAGSGGPVLQFKGNFGSQGKAS 208 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (343)
.|.+||+.+++....+.. . .+..+.|+|...++++..+. ...+|.+.. ++ ...+...
T Consensus 153 ~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~---~~-~~~l~~~-------- 216 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWED---GK-EEKMFEK-------- 216 (347)
T ss_dssp EEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEET---TE-EEEEEEE--------
T ss_pred eEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeCC---Cc-eEEeccC--------
Confidence 688999988743144433 2 47888999943666665542 445554434 22 3333321
Q ss_pred cCeEEEEEcCCCCeEEEEEecC-------CcEEEEEccCCceeeeeecCCCCcccccCCccccEEE-EEEeecCCCCcCC
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSS-------GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE-VQYDCHTKSSNIS 280 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~ 280 (343)
..+..+ +|++..+++.+..+ ..|.+|| . .....+. ..|...+.. +.|+ ++
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~----------~~~~~~~~~~~~~s-dg------ 274 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGIL----------DEVDRGVGQAKIKD-GK------ 274 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESS----------TTCCSEEEEEEEET-TE------
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEecc----------ccCCcccCCccEEc-Cc------
Confidence 124444 89988765554332 4688888 3 2333333 445677876 8898 54
Q ss_pred CCCccceEEEecCCeEEEEecC-CCcccccccccccceeeecCCCCCeeEEccCCc
Q 019258 281 SSRVLPAMFCSEDGILAVVEQG-EEPFELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 281 ~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
.+++++.++.+.+| .. .+...+......|.+++++| ..+++++++.
T Consensus 275 -----~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~ 321 (347)
T 2gop_A 275 -----VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE---IVVYLKETAT 321 (347)
T ss_dssp -----EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS---SEEEEEECSS
T ss_pred -----EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC---cEEEEEcCCC
Confidence 47888999988887 54 22333334456789999998 5666665554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-09 Score=96.37 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=137.5
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC------
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS------ 91 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d------ 91 (343)
..+..++|+| +++.|+.++.+...+...|++|++..... ........ +..+.|+ +++.|+.++.+
T Consensus 59 ~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~l~~~~~~~g~~---~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~ 130 (347)
T 2gop_A 59 ENATMPRISP----DGKKIAFMRANEEKKVSEIWVADLETLSS---KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDED 130 (347)
T ss_dssp ESCEEEEECT----TSSEEEEEEEETTTTEEEEEEEETTTTEE---EEEEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred ccCCCeEECC----CCCEEEEEEeccCCCcceEEEEECCCCce---EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence 4577899999 89999988876422333578888854221 11222334 8999999 78877777632
Q ss_pred ---------------------CcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCC-------cEEEEEC
Q 019258 92 ---------------------GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDG-------RVNLVSV 142 (343)
Q Consensus 92 ---------------------g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg-------~v~~wd~ 142 (343)
..|.+|++..++.+..... . .+..+.|+ ...++++..+. ...+|.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~ 205 (347)
T 2gop_A 131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIW 205 (347)
T ss_dssp ------CCCC---------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEE
T ss_pred cEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C-CcccccCCCCeEEEEEecccccccccccccEEEe
Confidence 5688888875554122211 1 56788888 23666665542 4455554
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC--------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG--------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
+++ ....+... . .+..+ +| +..++.++.+ ..|.+|| . ++ ...+.... . ..+..
T Consensus 206 d~~-~~~~l~~~--~-~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~---~~-~~~l~~~~--~----~~~~~ 267 (347)
T 2gop_A 206 EDG-KEEKMFEK--V-SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G---KE-VMGILDEV--D----RGVGQ 267 (347)
T ss_dssp ETT-EEEEEEEE--E-SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S---SC-EEESSTTC--C----SEEEE
T ss_pred CCC-ceEEeccC--c-ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C---Cc-eEeccccC--C----cccCC
Confidence 444 45544433 2 45555 66 6667666644 3688888 4 33 22322111 1 45775
Q ss_pred -EEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 214 -VDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 214 -v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
+.|+ ++ ++++++.++.+++| +.. .....+. .+...|.++.|+| . .+++++.
T Consensus 268 ~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~~~~~~-----------~~~~~v~~~~~s~--~----------~~~~~~~ 319 (347)
T 2gop_A 268 AKIKD-GK--VYFTLFEEGSVNLY-IWD-GEIKPIA-----------KGRHWIMGFDVDE--I----------VVYLKET 319 (347)
T ss_dssp EEEET-TE--EEEEEEETTEEEEE-EES-SSEEEEE-----------CSSSEEEEEEESS--S----------EEEEEEC
T ss_pred ccEEc-Cc--EEEEEecCCcEEEE-EcC-CceEEEe-----------cCCCeEEeeeeeC--c----------EEEEEcC
Confidence 8898 65 77889999999999 874 3333333 2467899999998 3 5777776
Q ss_pred CCe---EEEEe
Q 019258 293 DGI---LAVVE 300 (343)
Q Consensus 293 dg~---i~~~~ 300 (343)
++. |+.++
T Consensus 320 ~~~~~~l~~~~ 330 (347)
T 2gop_A 320 ATRLRELFTWD 330 (347)
T ss_dssp SSSCCEEEEES
T ss_pred CCChHHheEeC
Confidence 664 55555
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-09 Score=94.87 Aligned_cols=269 Identities=9% Similarity=-0.010 Sum_probs=157.3
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeec-CC----CCCCceeeeeCCCCCCCCCCccCC-------CCCCeeEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYD-TD----ADSPSLETHSISLPASLTPHSQWT-------PPTRISSLS 78 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D-~~----~~~~~l~~w~~~~~~~~~~~~~~~-------~~~~v~~v~ 78 (343)
.+.+++....- .++++| +++++..++.. .. ...-.|.+||.... +....+. +......+.
T Consensus 43 ~~~~i~~g~~p-~i~~sp----dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~~~i~~~~~~~~~g~~p~~i~ 114 (361)
T 2oiz_A 43 FLGMVPTAFNG-HVQVSN----DGKKIYTMTTYHERITRGKRSDVVEVWDADKL---TFEKEISLPPKRVQGLNYDGLFR 114 (361)
T ss_dssp EEEEEECCEEE-EEEECT----TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEEEEEEECTTBCCBCCCGGGEE
T ss_pred EEEEecCCCCC-ceEECC----CCCEEEEEEecccccccCCCCCEEEEEECcCC---cEEEEEEcCccccccCCCcceEE
Confidence 34445444444 889999 88888777531 00 00013679988532 2222221 234577899
Q ss_pred cc-CCCeEEEEcC--CCcEEEEEccCceeeee-eccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC-CceEEE
Q 019258 79 TS-HQSLVAASTL--SGSLHVLSSAMQVLLSV-DENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG-GGEFKR 150 (343)
Q Consensus 79 ~~-~~~~l~~~s~--dg~v~v~~~~~~~~~~~-~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~-~~~~~~ 150 (343)
++ ++++|+++.. ++.|.+||+...+.+.. ... +....+.+. ...+++.+.||.+.+|+... ++ ...
T Consensus 115 ~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-----~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~ 188 (361)
T 2oiz_A 115 QTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-----AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VAS 188 (361)
T ss_dssp ECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-----TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EEE
T ss_pred ECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-----CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-Eee
Confidence 99 8888888864 68999999986655433 221 122223333 46788999999999999865 43 331
Q ss_pred EE------cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC-e-eEEeccc---CCCCCcccCeEEEEEcC
Q 019258 151 VY------DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP-V-LQFKGNF---GSQGKASGMIHSVDIHP 218 (343)
Q Consensus 151 ~~------~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~-~-~~~~~~~---~~~~~~~~~i~~v~~~p 218 (343)
.. ..... .+ .+.+.+ +..++..+.++.|.++|+.. ... + ..+.... ...+.......-++++|
T Consensus 189 ~~~~~~~~~~~~~-~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 189 QSRSKQMFSVKDD-PI-FIAPALDKDKAHFVSYYGNVYSADFSG---DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp EEECCCCSCTTTS-CB-CSCCEECSSEEEEEBTTSEEEEEECSS---SSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred eccccceEcCCCC-ce-EEEecccCCEEEEEeCCCeEEEEEecC---CCceecccccccCccccccccccCCeeEEEEec
Confidence 11 11111 11 112223 44666677899999999965 221 1 1121100 00000001122368999
Q ss_pred CCCeEEEEEec----------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 219 SRKHTCLAGGS----------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 219 ~~~~~~~sg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
++..++++... ++.|.+||+.+.+....+. .+. .++|+|+|++. +|+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-----------~~~--p~~ia~spdg~----------~l~ 320 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-----------GRD--ALSMTIDQQRN----------LML 320 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-----------CTT--CCEEEEETTTT----------EEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-----------cCC--eeEEEECCCCC----------EEE
Confidence 98877766541 3479999998865443333 333 89999999988 677
Q ss_pred EEecCCeEEEEecCCC---ccccc-ccccccceeeecC
Q 019258 289 FCSEDGILAVVEQGEE---PFELL-AEPCAINSFDIDP 322 (343)
Q Consensus 289 s~s~dg~i~~~~~~~~---~~~~~-~~~~~i~s~~~~~ 322 (343)
+++. ++|.+||.... ....+ .....-+.|.++|
T Consensus 321 v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 321 TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence 7776 99999997543 22221 2234457788888
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-09 Score=93.51 Aligned_cols=231 Identities=9% Similarity=-0.030 Sum_probs=142.9
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
..|.++.|+ +...++..+.++.++.|.- +...... .+...+.++.|+ +..++++..++.|.+||..+++ .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWLEIS---KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-I 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEEEEE---SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-E
T ss_pred cccceeeecCCccceeEEeecccCccccc---ceeEEEe---ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-E
Confidence 346677777 4445555567888888822 2222221 244456888888 6766788889999999998874 4
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCC----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFG----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
......+.. .+.++++++ +..+++...+ +.|.+||... ......+.... ....+..++++|++. +
T Consensus 79 ~~~~~~~~~-~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~-----~~~~~~~i~~d~~g~-l 148 (333)
T 2dg1_A 79 KRPFVSHKA-NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG---DNLQDIIEDLS-----TAYCIDDMVFDSKGG-F 148 (333)
T ss_dssp EEEEECSSS-SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS---CSCEEEECSSS-----SCCCEEEEEECTTSC-E
T ss_pred EEEeeCCCC-CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC---CEEEEEEccCc-----cCCcccceEECCCCC-E
Confidence 444322333 699999999 5555555555 6899999876 33221222111 114689999999885 4
Q ss_pred EEEEec------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 224 CLAGGS------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 224 ~~sg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
+++... .+.|..+|..... ...+. .+...+..++|+|++.. ..++.+.++.|+
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~~i~~~~dg~~---------l~v~~~~~~~i~ 207 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRT-VTPII-----------QNISVANGIALSTDEKV---------LWVTETTANRLH 207 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCC-EEEEE-----------EEESSEEEEEECTTSSE---------EEEEEGGGTEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCE-EEEee-----------cCCCcccceEECCCCCE---------EEEEeCCCCeEE
Confidence 444433 3566666665422 22221 12345788999999763 344556788999
Q ss_pred EEecCC--Ccccc-----c---ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 298 VVEQGE--EPFEL-----L---AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 298 ~~~~~~--~~~~~-----~---~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+|+... ..... . .....+..+.+++ +|...++...++.|++|+
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred EEEecCCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEEC
Confidence 998742 11111 1 1112567788988 467777776677888885
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-09 Score=103.00 Aligned_cols=269 Identities=10% Similarity=-0.075 Sum_probs=159.2
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-----CCCCCCeeEEEcc-CCCeEEEE-----cCCCcEEEEEcc
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-----WTPPTRISSLSTS-HQSLVAAS-----TLSGSLHVLSSA 100 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-----~~~~~~v~~v~~~-~~~~l~~~-----s~dg~v~v~~~~ 100 (343)
+++++++-...+.......|+..+..... ...+.. -.|...+.++.|+ ++++|+.+ +.+..|++||+.
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887776653223344444442221 111111 1233468899999 88887733 334689999998
Q ss_pred CceeeeeeccCCccccCe--EEEEec--CCEEEEEeCCCc-------------EEEEECCCCce-EEEEEcCCC-ccceE
Q 019258 101 MQVLLSVDENSGFHVGPI--SGVDLT--GSECVSVGEDGR-------------VNLVSVIGGGE-FKRVYDGNG-LVGFN 161 (343)
Q Consensus 101 ~~~~~~~~~~~~~h~~~v--~~~~~~--~~~~~s~s~dg~-------------v~~wd~~~~~~-~~~~~~~~~-~~~v~ 161 (343)
.++.+... +...+ ..+.|+ ++.|+.++.|.. |++|++.++.. ...++.... ...+.
T Consensus 156 tg~~~~~~-----~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSKVD-----VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp TCCBCSSC-----CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred CCCCcCCc-----ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 65543111 11122 578888 788999988876 99999987642 123333221 12588
Q ss_pred EEEeCC-CCEEEEEeCCC----cEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe---cCCcE
Q 019258 162 CVKWAS-PTEFVTGGFGY----GLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG---SSGTV 233 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~---~dg~v 233 (343)
.+.|+| +..++.++.++ .|.+||... ..+..+..+. ..+....+ |++. +++... .++.|
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~----~~~~~l~~~~-------~~~~~~~~-~~g~-l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGE----KDFRLLVKGV-------GAKYEVHA-WKDR-FYVLTDEGAPRQRV 297 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTC----SSCEEEEECS-------SCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCC----CceEEeecCC-------CceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence 999999 66777666655 566665433 3445555443 33445555 5566 655544 35889
Q ss_pred EEEEccCCce--eeeeecCCCCcccccCCc-cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--CC-ccc
Q 019258 234 FAWDLRWQQQ--SIVLSGVGTGEAVTHSLS-ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--EE-PFE 307 (343)
Q Consensus 234 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--~~-~~~ 307 (343)
.+||+.++.. ...+. ..+ ...+..+.|+ ++. .+++...|+..++|... .. ...
T Consensus 298 ~~~d~~~~~~~~~~~l~----------~~~~~~~l~~~~~~-~~~----------lv~~~~~dg~~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIV----------PEDSSASLLSVSIV-GGH----------LSLEYLKDATSEVRVATLKGKPVRT 356 (695)
T ss_dssp EEEBTTBCSGGGCEEEE----------CCCSSCEEEEEEEE-TTE----------EEEEEEETTEEEEEEEETTCCEEEE
T ss_pred EEEeCCCCCccCCeEEe----------cCCCCCeEEEEEEE-CCE----------EEEEEEECCEEEEEEEeCCCCeeEE
Confidence 9999976532 13333 222 4567888887 333 67888999987665432 22 222
Q ss_pred ccc-cccccceeeecCCCCCeeE----EccCCceEEEEe
Q 019258 308 LLA-EPCAINSFDIDPQNPSDVI----CSLEWESIAIVS 341 (343)
Q Consensus 308 ~~~-~~~~i~s~~~~~~~~~~l~----~~~~~~~i~~~~ 341 (343)
+.. ....+.++++++ +++.++ +....+.|++|+
T Consensus 357 l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 357 VQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp CCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEE
T ss_pred ecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEE
Confidence 222 245678888888 456666 333346788775
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.7e-08 Score=82.30 Aligned_cols=232 Identities=6% Similarity=-0.048 Sum_probs=148.6
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
..+.++.+. ++.++++...++.|.+|+.. .. +...... .+...+.++.+. +..+++...++.|..||.... .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLP-TPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--I 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--E
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCC-cccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--E
Confidence 578899988 66666666668899999877 33 2221111 234578889887 666777666889999998632 3
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...........+.++.+.+ +..+++...++.|..||. . ++ ...+.... .. ..+..++++|++. ++++.
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~---g~-~~~~~~~~-~~----~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D---GK-IREYELPN-KG----SYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T---CC-EEEEECSS-TT----CCEEEEEECTTSC-EEEEE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C---CC-EEEecCCC-CC----CCCceEEEcCCCC-EEEEe
Confidence 3332221222688999998 666666666889999998 4 22 22332111 01 4589999999874 56666
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE 307 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~ 307 (343)
..++.|..||. ++... .+.. ......+..+++++++. ..++...++.|..|+.......
T Consensus 159 ~~~~~i~~~~~-~g~~~-~~~~---------~~~~~~~~~i~~~~~g~----------l~v~~~~~~~i~~~~~~g~~~~ 217 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDIT-EFKI---------PTPASGPVGITKGNDDA----------LWFVEIIGNKIGRITTSGEITE 217 (299)
T ss_dssp TTTTEEEEECT-TCCEE-EEEC---------SSTTCCEEEEEECTTSS----------EEEEETTTTEEEEECTTCCEEE
T ss_pred CCCCEEEEEcC-CCcEE-EeeC---------CCCCCcceeEEECCCCC----------EEEEccCCceEEEECCCCcEEE
Confidence 66789999998 43322 2210 22345678999998865 4455556789999988333222
Q ss_pred c-cc-cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 308 L-LA-EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 308 ~-~~-~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .. ....+.++.+++ +|...++...++.|+.++
T Consensus 218 ~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEE
T ss_pred EECCCCCCCceeEEECC-CCCEEEeccCCceEEEEC
Confidence 1 11 124578899998 456666655667888775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-09 Score=89.89 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=144.1
Q ss_pred cccceeeEEecCCCCCCCC-eEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSK-LAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~-~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.......++|.| +++ +++++..++. |..|+.... .. ....+...+.++++. ++.++++...++.|
T Consensus 26 ~~~~~eg~~~d~----~g~~l~~~~~~~~~-----i~~~~~~~~--~~--~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 26 GFTWTEGPVYVP----ARSAVIFSDVRQNR-----TWAWSDDGQ--LS--PEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CCSSEEEEEEEG----GGTEEEEEEGGGTE-----EEEEETTSC--EE--EEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CCccccCCeEeC----CCCEEEEEeCCCCE-----EEEEECCCC--eE--EEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 345678899999 676 7777776653 678887543 11 112345678999998 77777776677899
Q ss_pred EEEEccCceeeeeecc-CCccccCeEEEEec--CCEEEEEeC-----------------CCcEEEEECCCCceEEEEEcC
Q 019258 95 HVLSSAMQVLLSVDEN-SGFHVGPISGVDLT--GSECVSVGE-----------------DGRVNLVSVIGGGEFKRVYDG 154 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~-~~~h~~~v~~~~~~--~~~~~s~s~-----------------dg~v~~wd~~~~~~~~~~~~~ 154 (343)
.+|+..+++...+... .......++++.+. |..+++.+. .+.|..++.. + ........
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~ 170 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRD 170 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECC
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecC
Confidence 9999854433222211 11112345677887 777776321 2345555554 3 34444332
Q ss_pred CCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC-e-eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 155 NGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP-V-LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
.. ....++|+| ++.+++.+.++.|.+||+.. .+.. . ....... . +.+..++++++|. ++++. ++
T Consensus 171 ~~--~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~--~g~~~~~~~~~~~~--~----~~p~~i~~d~~G~-l~v~~--~~ 237 (296)
T 3e5z_A 171 RV--KPNGLAFLPSGNLLVSDTGDNATHRYCLNA--RGETEYQGVHFTVE--P----GKTDGLRVDAGGL-IWASA--GD 237 (296)
T ss_dssp CS--SEEEEEECTTSCEEEEETTTTEEEEEEECS--SSCEEEEEEEECCS--S----SCCCSEEEBTTSC-EEEEE--TT
T ss_pred CC--CCccEEECCCCCEEEEeCCCCeEEEEEECC--CCcCcCCCeEeeCC--C----CCCCeEEECCCCC-EEEEc--CC
Confidence 22 578999999 66677777789999999973 1332 1 1121111 1 4567899999985 54444 78
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe-ecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD-CHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.|.+||.. ++....+. .+.. +.+++|. |++. .|+.++.+ .|+.++..
T Consensus 238 ~v~~~~~~-g~~~~~~~-----------~~~~-~~~~~f~~~d~~----------~L~v~t~~-~l~~~~~~ 285 (296)
T 3e5z_A 238 GVHVLTPD-GDELGRVL-----------TPQT-TSNLCFGGPEGR----------TLYMTVST-EFWSIETN 285 (296)
T ss_dssp EEEEECTT-SCEEEEEE-----------CSSC-CCEEEEESTTSC----------EEEEEETT-EEEEEECS
T ss_pred eEEEECCC-CCEEEEEE-----------CCCC-ceeEEEECCCCC----------EEEEEcCC-eEEEEEcc
Confidence 99999986 33333322 3445 8899995 6665 57777765 45555543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-10 Score=100.09 Aligned_cols=222 Identities=7% Similarity=-0.086 Sum_probs=129.4
Q ss_pred CeeEEEcc-CCCeEEEEcC-C--CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q 019258 73 RISSLSTS-HQSLVAASTL-S--GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~-d--g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
.+.+++|+ +++.|+.... + ..|.+|++...+...+.. .+......+.|+ ++.|+.++.++.|.+||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 36778898 7787766654 3 367777877554433322 122222235666 8899999999999999998874
Q ss_pred eEEEEEcCCCccceEE-------------------EEeCC-CCEEEEE-----eCCCcEEEEEccccCCCCCeeEEeccc
Q 019258 147 EFKRVYDGNGLVGFNC-------------------VKWAS-PTEFVTG-----GFGYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~-------------------~~~~~-~~~l~t~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
...+...+.. .... +.|+| +..++.. ..+..|.+||+.. ++. ..+....
T Consensus 114 -~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~~~~~~ 187 (396)
T 3c5m_A 114 -EQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET---GEL-EVIHQDT 187 (396)
T ss_dssp -EEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT---CCE-EEEEEES
T ss_pred -cEEEEecccc-cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC---CcE-EeeccCC
Confidence 4444443322 1112 23344 3333322 3567899999977 443 3333222
Q ss_pred CCCCCcccCeEEEEEcC-CCCeEEEEEecC-----CcEEEEEccCCceeeeeecCCCCcccccCCc-cccEEEEEEeecC
Q 019258 202 GSQGKASGMIHSVDIHP-SRKHTCLAGGSS-----GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLS-ESEVWEVQYDCHT 274 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p-~~~~~~~sg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~ 274 (343)
..+..+.|+| ++..++++.... ..|.+||+... ....+. ... ...+..+.|+|++
T Consensus 188 -------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~----------~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 188 -------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-NVRKIK----------EHAEGESCTHEFWIPDG 249 (396)
T ss_dssp -------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-CCEESS----------CCCTTEEEEEEEECTTS
T ss_pred -------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-ceeEee----------ccCCCccccceEECCCC
Confidence 5688999999 665554443221 46888888653 222222 111 2358889999998
Q ss_pred CCCcCCCCCccceEEEecC-----CeEEEEecCCCcccccccccccceeeecCCCCCeeEEcc
Q 019258 275 KSSNISSSRVLPAMFCSED-----GILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 275 ~~~~~~~~~~~~l~s~s~d-----g~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
. .|+..+.+ +.|++|+........+....... ..++|.+|..+++++
T Consensus 250 ~----------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 250 S----------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp S----------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEE
T ss_pred C----------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEec
Confidence 7 56666544 44999987543322222211223 778872456777643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-08 Score=85.86 Aligned_cols=236 Identities=9% Similarity=0.089 Sum_probs=144.4
Q ss_pred CeeEEEcc-CCCeEEE-------EcCCCcEEEEEccCceeeeeec-cCCccccCeEEEEec-C-CEEEEEeCCCcEEEEE
Q 019258 73 RISSLSTS-HQSLVAA-------STLSGSLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT-G-SECVSVGEDGRVNLVS 141 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~-------~s~dg~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~-~-~~~~s~s~dg~v~~wd 141 (343)
...+++|. ++.++++ +..++.|.+|+....+...... ....+...+.++.+. . ..+..++..+.|..||
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d 98 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence 45788888 6666666 4678899999876443322211 001244568889887 4 6666666555799999
Q ss_pred CCCCceEEEE-EcC---CCccceEEEEeCC-CCEEEEEeCC---------------CcEEEEEccccCCCCCeeEEeccc
Q 019258 142 VIGGGEFKRV-YDG---NGLVGFNCVKWAS-PTEFVTGGFG---------------YGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 142 ~~~~~~~~~~-~~~---~~~~~v~~~~~~~-~~~l~t~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
.. ++ .... ... .....+.++.+.+ ++.+++...+ +.|..||.. .....+....
T Consensus 99 ~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~~~~~~~ 171 (314)
T 1pjx_A 99 TD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-----GQMIQVDTAF 171 (314)
T ss_dssp TT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-----SCEEEEEEEE
T ss_pred CC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-----CCEEEeccCC
Confidence 88 53 4433 221 1112478999998 5555555444 455555542 2222322211
Q ss_pred CCCCCcccCeEEEEEc----CCCCeEEEEEecCCcEEEEEcc-CCcee-e-eeecCCCCcccccCCcc-ccEEEEEEeec
Q 019258 202 GSQGKASGMIHSVDIH----PSRKHTCLAGGSSGTVFAWDLR-WQQQS-I-VLSGVGTGEAVTHSLSE-SEVWEVQYDCH 273 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~----p~~~~~~~sg~~dg~v~iwd~~-~~~~~-~-~~~~~~~~~~~~~~~h~-~~v~~v~~~p~ 273 (343)
.....++++ |++..++++...++.|.+||+. .+... . .+.. ...+. .....++++++
T Consensus 172 -------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~--------~~~~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 172 -------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--------IPGTHEGGADGMDFDED 236 (314)
T ss_dssp -------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--------CCCCSSCEEEEEEEBTT
T ss_pred -------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE--------CCCCCCCCCCceEECCC
Confidence 346789999 9886677776778999999986 22211 0 1110 02233 55788999988
Q ss_pred CCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccc-cccceeeecCCCCC-eeEEccCCceEEEEe
Q 019258 274 TKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEP-CAINSFDIDPQNPS-DVICSLEWESIAIVS 341 (343)
Q Consensus 274 ~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~-~~i~s~~~~~~~~~-~l~~~~~~~~i~~~~ 341 (343)
+. ..++...++.|..|+.. .+....+..+ ..+.++.+++ ++. ..++...++.|+.++
T Consensus 237 G~----------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 237 NN----------LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CC----------EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CC----------EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEe
Confidence 75 56666678899999876 3333333333 5678899987 556 445555567888775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.7e-09 Score=89.12 Aligned_cols=187 Identities=8% Similarity=-0.024 Sum_probs=129.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
++.+++++.|+.|.+||..+++. ...+..+....+.++.+.| ++.++ +.++.|..||. + ++.+.++.....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~---G~~~W~~~~~~~- 76 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D---GRELWNIAAPAG- 76 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T---SCEEEEEECCTT-
T ss_pred CcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C---CCEEEEEcCCCC-
Confidence 56789999999999999989864 4444444312588889999 55555 56888999998 6 677777775321
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
..+.++.+.|++..+ ++.+. ++.|..+|. .++....+.. .... ..+......+.+.+++.
T Consensus 77 -----~~~~~~~~~~dG~~l-v~~~~~~~~v~~vd~-~Gk~l~~~~~-~~~~----~~~~~~~~~v~~~~~G~------- 137 (276)
T 3no2_A 77 -----CEMQTARILPDGNAL-VAWCGHPSTILEVNM-KGEVLSKTEF-ETGI----ERPHAQFRQINKNKKGN------- 137 (276)
T ss_dssp -----CEEEEEEECTTSCEE-EEEESTTEEEEEECT-TSCEEEEEEE-CCSC----SSGGGSCSCCEECTTSC-------
T ss_pred -----ccccccEECCCCCEE-EEecCCCCEEEEEeC-CCCEEEEEec-cCCC----CcccccccCceECCCCC-------
Confidence 358899999998654 55555 778888885 4443333321 0000 11223455667787776
Q ss_pred CccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 283 RVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.+++.+.++.|..|+...+..+.+..+....+....+ +|..++++.++++|+.++.
T Consensus 138 ---~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 138 ---YLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp ---EEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECT
T ss_pred ---EEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeC
Confidence 7889999999999998755555555455566677777 5689999988888888763
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=100.39 Aligned_cols=249 Identities=10% Similarity=-0.053 Sum_probs=150.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc-----
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS----- 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~----- 93 (343)
.+..++|+| ++++|+.++.++......|++|++.+.... ........+..+.|+ + +.|+.++.++.
T Consensus 164 ~~~~~~~SP----DG~~la~~~~~~G~e~~~i~v~dl~tg~~~---~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 164 ALDAWAASD----DGRLLAYSVQDGGSDWRTVKFVGVADGKPL---ADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEECT----TSSEEEEEEEETTCSEEEEEEEETTTCCEE---EEEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEEeEEECC----CCCEEEEEEcCCCCceEEEEEEECCCCCCC---CccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 678899999 899999887653222245889999654321 111111223678898 7 88888876654
Q ss_pred ---------EEEEEccCce--eeeeeccCCccccCeEEEEec--CCEEEEEeCCC-----cEEEEECCCCc-e-EEEEEc
Q 019258 94 ---------LHVLSSAMQV--LLSVDENSGFHVGPISGVDLT--GSECVSVGEDG-----RVNLVSVIGGG-E-FKRVYD 153 (343)
Q Consensus 94 ---------v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg-----~v~~wd~~~~~-~-~~~~~~ 153 (343)
|++|++.... ...+... ..|...+..+.|+ |+.++..+.++ .|.+||+.++. . ...+..
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 8888886433 1222222 2343457888898 77777766543 79999998752 2 344443
Q ss_pred CCCccceEEEEeCCCCEEEEEeC----CCcEEEEEccccCCC-CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 154 GNGLVGFNCVKWASPTEFVTGGF----GYGLQWWDLRRAGSG-GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 154 ~~~~~~v~~~~~~~~~~l~t~~~----d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.... .....+..++.|+..+. ++.|.+||+.. + .....+..+. . ..+..+++. +..++++..
T Consensus 315 ~~~~--~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~---~~~~~~~l~~~~--~----~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 315 DLKA--QWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG---STPRFDTVVPES--K----DNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp SSSS--CEEEEEEETTEEEEEECTTCTTCEEEEEECSS---SSCEEEEEECCC--S----SEEEEEEEE--BTEEEEEEE
T ss_pred CCCc--eEEEEeccCCEEEEEECCCCCCCEEEEEeCCC---CccccEEEecCC--C----CeEEEEEEE--CCEEEEEEE
Confidence 3332 33333322777777665 34599999866 3 2334444332 1 346677776 457888999
Q ss_pred cCCcEEEEEcc-CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe---cCCeEEEEecCCC
Q 019258 229 SSGTVFAWDLR-WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS---EDGILAVVEQGEE 304 (343)
Q Consensus 229 ~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s---~dg~i~~~~~~~~ 304 (343)
.|+..++|.+. .+.....+. ..+.+.+..+.++|++.. .+++.+ ..++|+.|+....
T Consensus 382 ~dg~~~l~~~~~~g~~~~~l~----------~~~~~~v~~~~~s~d~~~---------l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 382 HDAKSQVLAFDLDGKPAGAVS----------LPGIGSASGLSGRPGDRH---------AYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp ETTEEEEEEEETTSCEEEECB----------CSSSCEEEEEECCBTCSC---------EEEEEEETTEEEEEEEEETTTT
T ss_pred ECCEEEEEEEeCCCCceeecc----------CCCCeEEEEeecCCCCCE---------EEEEEcCCCCCCEEEEEECCCC
Confidence 99988877654 223222221 123567889999998764 333333 3468999986543
Q ss_pred ccccc
Q 019258 305 PFELL 309 (343)
Q Consensus 305 ~~~~~ 309 (343)
..+++
T Consensus 443 ~~~~l 447 (741)
T 1yr2_A 443 KTTPW 447 (741)
T ss_dssp EEEEC
T ss_pred cEEEE
Confidence 33333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-07 Score=88.74 Aligned_cols=294 Identities=12% Similarity=0.063 Sum_probs=180.0
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-----CCC
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-----HQS 83 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-----~~~ 83 (343)
...+.+++.+..+..+.++| +++++.+++.|+ .|.+||+... ..+....+........+.|+ +++
T Consensus 187 ~~v~~~i~~g~~p~~v~~Sp----DGr~lyv~~~dg-----~V~viD~~~~-t~~~v~~i~~G~~P~~ia~s~~~~pDGk 256 (567)
T 1qks_A 187 YEIKTVLDTGYAVHISRLSA----SGRYLFVIGRDG-----KVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWEDK 256 (567)
T ss_dssp CCEEEEEECSSCEEEEEECT----TSCEEEEEETTS-----EEEEEETTSS-SCCEEEEEECCSEEEEEEECCSTTCTTT
T ss_pred CeEEEEEeCCCCccceEECC----CCCEEEEEcCCC-----eEEEEECCCC-CCcEeEEEecCCCCceeEEccccCCCCC
Confidence 34566777778888999999 898888888764 3668998411 12334444445566788898 677
Q ss_pred eEEEEcC-CCcEEEEEccCceeeeeeccCC-------cccc-CeEEEEec---CCEEEEEeCCCcEEEEECCCCceEE-E
Q 019258 84 LVAASTL-SGSLHVLSSAMQVLLSVDENSG-------FHVG-PISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFK-R 150 (343)
Q Consensus 84 ~l~~~s~-dg~v~v~~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~-~ 150 (343)
+++++.. ++.|.++|..+.+.+....... .|.. .+..+..+ ...+++...+|.|.++|....+... .
T Consensus 257 ~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 257 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence 7777665 6999999987666554433210 1222 56677666 3355666788999999987753222 2
Q ss_pred EEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 151 VYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 151 ~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.+. ... ...++.|++ +.+++++. .+++|.++|+.+ ++.+..+..-. +..|.+....+ ++|++..+++++.
T Consensus 337 ~i~-~~~-~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t---~kl~~~i~vgg--~~Phpg~g~~~-~~p~~g~v~~t~~ 408 (567)
T 1qks_A 337 EIS-AER-FLHDGGLDGSHRYFITAANARNKLVVIDTKE---GKLVAIEDTGG--QTPHPGRGANF-VHPTFGPVWATSH 408 (567)
T ss_dssp EEE-CCS-SEEEEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSS--SSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred eee-ccc-cccCceECCCCCEEEEEeCCCCeEEEEECCC---CcEEEEEeccC--cCCCCccceee-ECCCCCcEEEeCC
Confidence 222 222 577889999 66665554 589999999988 55555544201 11111111122 5887656666654
Q ss_pred -cCCcEEEEEccCCce------eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-------CC
Q 019258 229 -SSGTVFAWDLRWQQQ------SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-------DG 294 (343)
Q Consensus 229 -~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-------dg 294 (343)
.+++|.++|...... ..... ......-..|..+|+++ +++.... .+
T Consensus 409 ~g~~~Vsvid~~~~~~~~~~~kvv~~i----------~~~g~g~~~i~~~p~~~----------~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 409 MGDDSVALIGTDPEGHPDNAWKILDSF----------PALGGGSLFIKTHPNSQ----------YLYVDATLNPEAEISG 468 (567)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEE----------ECSCSCCCCEECCTTCS----------EEEEECTTCSSHHHHT
T ss_pred CCCCeEEEecCCCCCCccccCEEEEEE----------ecCCCCCEEEEeCCCCC----------eEEEecCCCCCcccCc
Confidence 568999999876221 11211 11112224477888887 4555442 35
Q ss_pred eEEEEecCCC-------cccccc--------c-ccccceeeecCCCCCeeEEc--c---CCceEEEEe
Q 019258 295 ILAVVEQGEE-------PFELLA--------E-PCAINSFDIDPQNPSDVICS--L---EWESIAIVS 341 (343)
Q Consensus 295 ~i~~~~~~~~-------~~~~~~--------~-~~~i~s~~~~~~~~~~l~~~--~---~~~~i~~~~ 341 (343)
+|.+++.... ..+.+. + ...+..+.+++ +|++|..+ + +++.|.+++
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEE
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEE
Confidence 8999986532 112221 1 34578899998 56766655 2 357888775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-08 Score=84.03 Aligned_cols=215 Identities=7% Similarity=0.007 Sum_probs=141.2
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccc-cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHV-GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
++++|++++.++.|.+||..+++.+-.... +. ..++++.+. ++.++ +.++.|..||. +++...+ +.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~-~~~~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL---EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN-IAAPAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC---CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE-EECCTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC---CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE-EcCCCC
Confidence 467889999999999999866665433322 22 356777776 77777 45788999998 6654444 444322
Q ss_pred cceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
..+.++.+.+ ++.+++.+. ++.|..+|. . ++.+.++....... ....+...++..+++. ++++...++.|..
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~---Gk~l~~~~~~~~~~-~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~ 150 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNM-K---GEVLSKTEFETGIE-RPHAQFRQINKNKKGN-YLVPLFATSEVRE 150 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECT-T---SCEEEEEEECCSCS-SGGGSCSCCEECTTSC-EEEEETTTTEEEE
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeC-C---CCEEEEEeccCCCC-cccccccCceECCCCC-EEEEecCCCEEEE
Confidence 2588888888 777777776 677777764 3 56666655321100 0113455667888875 5678889999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-CCcccccccc--
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-EEPFELLAEP-- 312 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~~~~~~~~~~-- 312 (343)
||.. ++....+.. ......+.+.+++. .+++++.+++|..++.. .+..+.+...
T Consensus 151 ~d~~-G~~~w~~~~------------~~~~~~~~~~~~g~----------~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 151 IAPN-GQLLNSVKL------------SGTPFSSAFLDNGD----------CLVACGDAHCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp ECTT-SCEEEEEEC------------SSCCCEEEECTTSC----------EEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred ECCC-CCEEEEEEC------------CCCccceeEcCCCC----------EEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence 9987 666666541 13445677777766 67778888899999876 4454444321
Q ss_pred -----cccceeeecCCCCCeeEEcc
Q 019258 313 -----CAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 313 -----~~i~s~~~~~~~~~~l~~~~ 332 (343)
.-+.++...+ +|..+++.+
T Consensus 208 ~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp BSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred CCccccccccceEcC-CCCEEEEec
Confidence 1256667776 567777773
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=90.35 Aligned_cols=134 Identities=14% Similarity=0.058 Sum_probs=88.7
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe----------CCCcEEEEECCCCceEEEEEcCC--
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG----------EDGRVNLVSVIGGGEFKRVYDGN-- 155 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s----------~dg~v~~wd~~~~~~~~~~~~~~-- 155 (343)
.|+.|.+||..+.+.+.... .+..+ .+.++ ++.++++. .+++|.+||+.+.+....+....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~---~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVP---TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEE---CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEec---CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 47899999987655443322 24444 77887 77787775 36789999998875443332221
Q ss_pred --CccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 156 --GLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 156 --~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
.......++++| ++.++++.. ++.|.+||+.. .+.+.. +.. .....+.+.|.+...+++.+.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~---~~~~~~~i~~---------~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK---GDYVEDVTAA---------AGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT---TEEEEEEGGG---------TTEEEEEECTTSSSEEEEEET
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC---CcEEEEEecC---------CCcceeEEcCCCCeeEEEECC
Confidence 011466789999 777777664 68999999988 555544 331 112335677877566778888
Q ss_pred CCcEEEEEccC
Q 019258 230 SGTVFAWDLRW 240 (343)
Q Consensus 230 dg~v~iwd~~~ 240 (343)
||++.+|++..
T Consensus 172 dg~~~~v~~~~ 182 (361)
T 2oiz_A 172 DGGLLTINLGE 182 (361)
T ss_dssp TSSEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 89988888754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.8e-08 Score=93.73 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=157.2
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCC---CCCCCCCCc---cCC--CCCCeeEEEcc-CCCeEEEEcCC-C----cEEEE
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSIS---LPASLTPHS---QWT--PPTRISSLSTS-HQSLVAASTLS-G----SLHVL 97 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~---~~~~~~~~~---~~~--~~~~v~~v~~~-~~~~l~~~s~d-g----~v~v~ 97 (343)
+++++++-...+.......|+.-+.. +. ....+. .+. +...+.++.|+ ++++|+.++.+ | .|++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGT-KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTC-CCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCC-CCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48888887776654333344444432 21 111110 112 22367889999 88888777653 3 59999
Q ss_pred EccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCc--------------EEEEECCCCce-EEEEEcCCCc-cce
Q 019258 98 SSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGR--------------VNLVSVIGGGE-FKRVYDGNGL-VGF 160 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~--------------v~~wd~~~~~~-~~~~~~~~~~-~~v 160 (343)
|+..++.+... .+...+..+.|+ ++.|+.++.|+. |.+|++.++.. -..++..... ..+
T Consensus 195 dl~tg~~~~~~----~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 195 GVADGKPLADE----LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp ETTTCCEEEEE----EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred ECCCCCCCCcc----CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 99866544321 111223467787 567777776554 88999877531 1233333221 147
Q ss_pred EEEEeCC-CCEEEEEeCC-----CcEEEEEccccCCC--CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec---
Q 019258 161 NCVKWAS-PTEFVTGGFG-----YGLQWWDLRRAGSG--GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS--- 229 (343)
Q Consensus 161 ~~~~~~~-~~~l~t~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~--- 229 (343)
..+.|+| +..++..+.+ ..|.+||+.. + ++...+.... ....... .|++..+++....
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~-------~~~~~~~-~~dg~~l~~~s~~~~~ 339 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTN---GKIGPVTALIPDL-------KAQWDFV-DGVGDQLWFVSGDGAP 339 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEET---TEECCCEEEECSS-------SSCEEEE-EEETTEEEEEECTTCT
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCC---CCCcccEEecCCC-------CceEEEE-eccCCEEEEEECCCCC
Confidence 8899999 6667766654 3899999977 3 2145555433 2233333 3777776655432
Q ss_pred CCcEEEEEccCCc-eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE--ecCCC-c
Q 019258 230 SGTVFAWDLRWQQ-QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV--EQGEE-P 305 (343)
Q Consensus 230 dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~--~~~~~-~ 305 (343)
++.|.+||+..+. ....+. ..+...+..+.+. +.. .+++...||..++| +.... .
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~----------~~~~~~l~~~~~~--~~~---------lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVV----------PESKDNLESVGIA--GNR---------LFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEE----------CCCSSEEEEEEEE--BTE---------EEEEEEETTEEEEEEEETTSCEE
T ss_pred CCEEEEEeCCCCccccEEEe----------cCCCCeEEEEEEE--CCE---------EEEEEEECCEEEEEEEeCCCCce
Confidence 4569999987642 334444 3344556677777 333 67888889976555 43222 2
Q ss_pred ccccc-cccccceeeecCCCCCeeEE----ccCCceEEEEe
Q 019258 306 FELLA-EPCAINSFDIDPQNPSDVIC----SLEWESIAIVS 341 (343)
Q Consensus 306 ~~~~~-~~~~i~s~~~~~~~~~~l~~----~~~~~~i~~~~ 341 (343)
..+.. ....+..++++++ ++.|+. ....+.|+.|+
T Consensus 399 ~~l~~~~~~~v~~~~~s~d-~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPG-DRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EECBCSSSCEEEEEECCBT-CSCEEEEEEETTEEEEEEEEE
T ss_pred eeccCCCCeEEEEeecCCC-CCEEEEEEcCCCCCCEEEEEE
Confidence 22221 2456888899884 455552 23346777775
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.9e-07 Score=77.07 Aligned_cols=232 Identities=6% Similarity=-0.037 Sum_probs=147.4
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
..+.++.+. ++.++++...++.|.+|+.. .+... .... .+...+.++.+. +..+++...++.|..+|.. ++ .
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~ 94 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP-TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-F 94 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC-CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-e
Confidence 467888888 66777776678999999877 33222 1111 233567888887 6666666668889999987 53 3
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
...........+.++.+.+ +..+++...++.|..+|... .+..+.... .. ..+..++++|++. ++++.
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~-~~----~~~~~i~~d~~g~-l~v~~ 163 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-----TIYEYDLPN-KG----SYPAFITLGSDNA-LWFTE 163 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-----CEEEEECSS-TT----CCEEEEEECTTSS-EEEEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-----CEEEccCCC-CC----CCceeEEECCCCC-EEEEe
Confidence 3332221223688999988 66666665588899988742 222332111 01 4588999999876 66666
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE 307 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~ 307 (343)
..++.|..+|. .+... .+.. ..+...+..+++++++. ..++....+.|..++.......
T Consensus 164 ~~~~~i~~~~~-~g~~~-~~~~---------~~~~~~~~~i~~d~~g~----------l~v~~~~~~~i~~~~~~g~~~~ 222 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLE-EYPL---------PTNAAAPVGITSGNDGA----------LWFVEIMGNKIGRITTTGEISE 222 (300)
T ss_dssp TTTTEEEEECT-TCCEE-EEEC---------SSTTCCEEEEEECTTSS----------EEEEETTTTEEEEECTTCCEEE
T ss_pred cCCCeEEEECC-CCcEE-EeeC---------CCCCCCcceEEECCCCC----------EEEEccCCCEEEEEcCCCcEEE
Confidence 66789999998 33322 2220 22345688999998764 4445556678999987433322
Q ss_pred c-cc-cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 308 L-LA-EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 308 ~-~~-~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. .. ....+.++.+++ +|...++...++.|+.++
T Consensus 223 ~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 223 YDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEC
T ss_pred EECCCCCCCceEEEECC-CCCEEEeccCCCeEEEEC
Confidence 2 11 124567899988 456666665567888775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-07 Score=80.44 Aligned_cols=243 Identities=9% Similarity=0.026 Sum_probs=142.4
Q ss_pred cceeeEEecCCCCCCCCeEEE-------EeecCCCCCCceeeeeCCCCCCCCCCcc---CCCCCCeeEEEcc-CCCeEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVL-------AIYDTDADSPSLETHSISLPASLTPHSQ---WTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t-------~s~D~~~~~~~l~~w~~~~~~~~~~~~~---~~~~~~v~~v~~~-~~~~l~~ 87 (343)
.....++|.| ++.++++ ++.++ .|..|+....... .+.. ..+...+.++.+. ++..|..
T Consensus 18 ~~~~~~~~~~----~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 18 PGAEGPVFDK----NGDFYIVAPEVEVNGKPAG-----EILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp TTCEEEEECT----TSCEEEEETTCEETTEECC-----EEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred CCccCceECC----CCCEEEEEeccccCCCCCC-----EEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEE
Confidence 4568899998 7778877 45553 3668876432211 1110 0133568899998 4145555
Q ss_pred EcCCCcEEEEEccCceeeee-eccC-CccccCeEEEEec--CCEEEEEeCC---------------CcEEEEECCCCceE
Q 019258 88 STLSGSLHVLSSAMQVLLSV-DENS-GFHVGPISGVDLT--GSECVSVGED---------------GRVNLVSVIGGGEF 148 (343)
Q Consensus 88 ~s~dg~v~v~~~~~~~~~~~-~~~~-~~h~~~v~~~~~~--~~~~~s~s~d---------------g~v~~wd~~~~~~~ 148 (343)
++..+.|.+|+.. .+.... .... ......+.++.+. +..+++...+ +.|..+|.. + ..
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~ 164 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QM 164 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CE
T ss_pred EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C-CE
Confidence 5555578888877 433222 2111 1122457888887 6666666554 567777765 4 23
Q ss_pred EEEEcCCCccceEEEEeC----C-CCE-EEEEeCCCcEEEEEccccCCCCCe--eEEecccCCCCCcccCeEEEEEcCCC
Q 019258 149 KRVYDGNGLVGFNCVKWA----S-PTE-FVTGGFGYGLQWWDLRRAGSGGPV--LQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~----~-~~~-l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
........ ....++++ + ++. +++...++.|.+||+.. .+... ..+..... . .......+++++++
T Consensus 165 ~~~~~~~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~--~g~~~~~~~~~~~~~-~--~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 165 IQVDTAFQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG--PAKIENKKVWGHIPG-T--HEGGADGMDFDEDN 237 (314)
T ss_dssp EEEEEEES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE--TTEEEEEEEEEECCC-C--SSCEEEEEEEBTTC
T ss_pred EEeccCCC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCC--CCccccceEEEECCC-C--CCCCCCceEECCCC
Confidence 33332222 36788888 8 334 44445689999999863 12211 11111110 0 00236789999987
Q ss_pred CeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 221 KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
. ++++...++.|.+||.++++....+. .+...+.+++|+|++.. ..++...++.|..++
T Consensus 238 ~-l~v~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~~~~i~~~~dg~~---------l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 238 N-LLVANWGSSHIEVFGPDGGQPKMRIR-----------CPFEKPSNLHFKPQTKT---------IFVTEHENNAVWKFE 296 (314)
T ss_dssp C-EEEEEETTTEEEEECTTCBSCSEEEE-----------CSSSCEEEEEECTTSSE---------EEEEETTTTEEEEEE
T ss_pred C-EEEEEcCCCEEEEEcCCCCcEeEEEe-----------CCCCCceeEEECCCCCE---------EEEEeCCCCeEEEEe
Confidence 4 66666678899999987543322222 23467899999988763 334445668899988
Q ss_pred cC
Q 019258 301 QG 302 (343)
Q Consensus 301 ~~ 302 (343)
..
T Consensus 297 ~~ 298 (314)
T 1pjx_A 297 WQ 298 (314)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-07 Score=82.47 Aligned_cols=247 Identities=9% Similarity=-0.033 Sum_probs=151.0
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC--cEEEEECCCCce
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG--RVNLVSVIGGGE 147 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg--~v~~wd~~~~~~ 147 (343)
....|+|. ++.++++...++.|++|+........+... ...+. +.|+ ++.++.+..++ .|.+++...+..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 56788888 666777777789999999875443333322 11222 6666 77888888766 788888876533
Q ss_pred EEEE--EcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 148 FKRV--YDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 148 ~~~~--~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
.... ........+.+++++| ...|..+..++.|..||... .. ...+............|...++++|++..++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~---~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT---QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT---CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC---CC-EEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 2222 1121222578899999 77777777789999999876 32 3333111100000001123999999766788
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCC----CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cCCeEEEE
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVG----TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-EDGILAVV 299 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~dg~i~~~ 299 (343)
++...++.|+.||.... ...+.+.. ..+.......-.....|+++|++. .+++-+ .+++|+.|
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~----------lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN----------FYIVDGFKGYCLRKL 350 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC----------EEEEETTTTCEEEEE
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC----------EEEEeCCCCCEEEEE
Confidence 88888999999997642 22222110 000000001123468999999876 566666 78899999
Q ss_pred ec-CCCccccccc---------------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 300 EQ-GEEPFELLAE---------------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 300 ~~-~~~~~~~~~~---------------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+. ......+... -.....++++++ |...++-..+.+|+.+.
T Consensus 351 ~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp ETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEE
T ss_pred ECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEE
Confidence 94 3332222221 124678999984 78888888888888764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-07 Score=76.85 Aligned_cols=220 Identities=15% Similarity=0.009 Sum_probs=134.2
Q ss_pred eeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 74 ISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 74 v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
..+..|+ ++.++++...++.|+.|+....... ... ....+.++.+. ++ ++.+. ++.|.+||..+++ ..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~----~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~-~~ 86 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT----MDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQS-AV 86 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE----CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTE-EE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe----CCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCc-EE
Confidence 3466777 3456777777899999998754322 121 23578889988 55 44444 5679999998874 43
Q ss_pred EEEcC---CCccceEEEEeCC-CCEEEEEeC---------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 150 RVYDG---NGLVGFNCVKWAS-PTEFVTGGF---------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 150 ~~~~~---~~~~~v~~~~~~~-~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+... .....+.++.+.+ +..+++... ...-.+|.+.. ...+..+.... ...+.++|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---~g~~~~~~~~~-------~~pngi~~ 156 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP---DHHVKKYFDQV-------DISNGLDW 156 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---TSCEEEEEEEE-------SBEEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---CCCEEEEeecc-------ccccceEE
Confidence 33322 1222578899999 554444322 13346666544 22233322111 44689999
Q ss_pred cCCCCeEEEEEecCCcEEEEEcc--CCce--eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLR--WQQQ--SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE 292 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~--~~~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~ 292 (343)
+|++..++++.+.++.|..||+. .+.. ...+.. ...+......+++++++. ..++...
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~~~~~~~p~g~~~d~~G~----------lwva~~~ 218 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--------LEKEEQIPDGMCIDAEGK----------LWVACYN 218 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--------CCGGGCEEEEEEEBTTSC----------EEEEEET
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--------CCCCCCCCCeeEECCCCC----------EEEEEcC
Confidence 99998888888888999999973 3221 111110 012345678899998875 4556667
Q ss_pred CCeEEEEecC-CCcccccccc-cccceeeecCCCCCeeE
Q 019258 293 DGILAVVEQG-EEPFELLAEP-CAINSFDIDPQNPSDVI 329 (343)
Q Consensus 293 dg~i~~~~~~-~~~~~~~~~~-~~i~s~~~~~~~~~~l~ 329 (343)
++.|..|+.. .+....+..+ ..+.++++.+.+++.|.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence 7889999985 3333333334 46788999832445443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-06 Score=75.19 Aligned_cols=219 Identities=10% Similarity=-0.043 Sum_probs=129.9
Q ss_pred eeEEEcc-C-CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 74 ISSLSTS-H-QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 74 v~~v~~~-~-~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
..+..|+ + +.++++...++.|..|+....+... .. ....+.++.+. ...++.++.++ |.+||..+++ ...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~----~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~-~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA----LPFMGSALAKISDSKQLIASDDG-LFLRDTATGV-LTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE----CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCC-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE----CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCc-EEE
Confidence 3566777 3 4566777778999999987543222 11 23468888887 44444455554 9999998774 443
Q ss_pred EEcC---CCccceEEEEeCC-CCEEEEEeC------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC
Q 019258 151 VYDG---NGLVGFNCVKWAS-PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 151 ~~~~---~~~~~v~~~~~~~-~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~ 220 (343)
+... .....+.++.+++ +..+++... .+.|..+| . ++ +..+.... .....++|+|++
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~---g~-~~~~~~~~-------~~~~~i~~s~dg 190 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K---GK-VTKLFADI-------SIPNSICFSPDG 190 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T---TE-EEEEEEEE-------SSEEEEEECTTS
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C---Cc-EEEeeCCC-------cccCCeEEcCCC
Confidence 3322 1122588999999 555444332 23444455 3 22 22222111 346789999999
Q ss_pred CeEEEEEecCCcEEEEEcc--CC-ce--eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe
Q 019258 221 KHTCLAGGSSGTVFAWDLR--WQ-QQ--SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI 295 (343)
Q Consensus 221 ~~~~~sg~~dg~v~iwd~~--~~-~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~ 295 (343)
..++++.+.++.|.+||+. ++ .. ...+... .........+++++++. ..++...++.
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--------~~~~~~p~gi~~d~~G~----------lwva~~~~~~ 252 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS--------TGIKGGMDGSVCDAEGH----------IWNARWGEGA 252 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC--------TTSSSEEEEEEECTTSC----------EEEEEETTTE
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEEC--------CCCCCCCCeeEECCCCC----------EEEEEeCCCE
Confidence 8777777778999999986 33 11 1111100 11234567888988775 4455556788
Q ss_pred EEEEecCCCcccccccc-cccceeeecCCCCCeeEE
Q 019258 296 LAVVEQGEEPFELLAEP-CAINSFDIDPQNPSDVIC 330 (343)
Q Consensus 296 i~~~~~~~~~~~~~~~~-~~i~s~~~~~~~~~~l~~ 330 (343)
|..|+...+....+..+ ..+.++++.+.+++.|..
T Consensus 253 v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~v 288 (326)
T 2ghs_A 253 VDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLV 288 (326)
T ss_dssp EEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred EEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEE
Confidence 99998754433333333 358899998324455533
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-07 Score=86.75 Aligned_cols=192 Identities=11% Similarity=0.039 Sum_probs=129.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEcc--ccCCCCCeeEEeccc
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLR--RAGSGGPVLQFKGNF 201 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~ 201 (343)
+..+++...+++|.++|..+++ +...+.... .+..+.++| ++++++++.|+.|.+||+. + .+.+.++...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~-v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t---~~~v~~i~~G- 239 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYE-IKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE---PTTVAEIKIG- 239 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCC-EEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSS---CCEEEEEECC-
T ss_pred ceEEEEeCCCCeEEEEECCCCe-EEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCC---CcEeEEEecC-
Confidence 4567788889999999999985 444444333 477899999 7788888999999999996 4 4556666532
Q ss_pred CCCCCcccCeEEEEEc----CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccc-cEEEEEEeecCCC
Q 019258 202 GSQGKASGMIHSVDIH----PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSES-EVWEVQYDCHTKS 276 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~----p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~ 276 (343)
.....++++ |++.+++++...+++|.++|..+.+....+...+ ...-....|.. .+..+..+++++.
T Consensus 240 -------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~-~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 240 -------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG-MTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp -------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE-ECTTTCCEESCCCEEEEEECSSSSE
T ss_pred -------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc-cccccccccCCCceEEEEEcCCCCE
Confidence 236789999 6999888888888999999988754433332100 00000011222 5778888888776
Q ss_pred CcCCCCCccceEEEecCCeEEEEecCCCc-cc--ccccccccceeeecCCCCCeeEE-ccCCceEEEEe
Q 019258 277 SNISSSRVLPAMFCSEDGILAVVEQGEEP-FE--LLAEPCAINSFDIDPQNPSDVIC-SLEWESIAIVS 341 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~--~~~~~~~i~s~~~~~~~~~~l~~-~~~~~~i~~~~ 341 (343)
++++..++|.|++++..... .. ..........+.|+| +|++++. ....+.|.+++
T Consensus 312 ---------~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 312 ---------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVID 370 (567)
T ss_dssp ---------EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEE
T ss_pred ---------EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEE
Confidence 77788888999999975431 11 111123456788998 5576544 44567888775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-06 Score=76.11 Aligned_cols=225 Identities=12% Similarity=0.066 Sum_probs=132.0
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVL 97 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~ 97 (343)
.-.....|.| .++.++++...++ +|..|+..... ...+.....+.++.+. +++ |+++. ++.|.+|
T Consensus 13 ~~~Egp~w~~---~~~~l~~~d~~~~-----~i~~~d~~~~~----~~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~ 78 (297)
T 3g4e_A 13 RCGESPVWEE---VSNSLLFVDIPAK-----KVCRWDSFTKQ----VQRVTMDAPVSSVALRQSGG-YVATI-GTKFCAL 78 (297)
T ss_dssp SBEEEEEEET---TTTEEEEEETTTT-----EEEEEETTTCC----EEEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEE
T ss_pred ccccCCeEEC---CCCEEEEEECCCC-----EEEEEECCCCc----EEEEeCCCceEEEEECCCCC-EEEEE-CCeEEEE
Confidence 4566889999 3456666655443 36678875422 1234456789999999 666 44444 5678899
Q ss_pred EccCceeeeeeccCC-ccccCeEEEEec--CCEEEEEeC---------CCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 98 SSAMQVLLSVDENSG-FHVGPISGVDLT--GSECVSVGE---------DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 98 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~s~s~---------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
+....+...+..... .....++++.+. +..+++... ...-.+|.+.............. ....++|
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~--~pngi~~ 156 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVD--ISNGLDW 156 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEES--BEEEEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccc--cccceEE
Confidence 987543322222111 122357788887 665554432 12345555543222333332222 4678999
Q ss_pred CC-CCEE-EEEeCCCcEEEEEccccCCCCCe--eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 166 AS-PTEF-VTGGFGYGLQWWDLRRAGSGGPV--LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 166 ~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++ ++.+ ++.+.++.|..||+... .+... ..+..... ..+....++++++| ++.++...++.|..||..++
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~-~G~~~~~~~~~~~~~----~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQ-TGQISNRRSVYKLEK----EEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTT-TCCEEEEEEEEECCG----GGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTC
T ss_pred cCCCCEEEEecCCCCcEEEEeccCC-CCcccCcEEEEECCC----CCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCc
Confidence 99 5544 55666899999997410 12211 11211110 01457889999998 56677777888999998765
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEe-ecCCC
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYD-CHTKS 276 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~ 276 (343)
+....+. .+...+.+++|. |+...
T Consensus 231 ~~~~~i~-----------~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 231 KRLQTVK-----------LPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp CEEEEEE-----------CSSSBEEEEEEESGGGCE
T ss_pred eEEEEEE-----------CCCCCceEEEEeCCCCCE
Confidence 5433332 234678999998 77663
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-07 Score=86.03 Aligned_cols=241 Identities=9% Similarity=-0.052 Sum_probs=139.2
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC-CeeEEEccCCCeEEEEcCCC-----
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT-RISSLSTSHQSLVAASTLSG----- 92 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~l~~~s~dg----- 92 (343)
..+..++|+| +++++|-+..........|++|++.+.... .. .... ....+.|++++.|+.++.+.
T Consensus 129 ~~l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~---~~-~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 129 TALDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPL---ET-PLKDVKFSGISWLGNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp CEEEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEE---EE-EEEEEESCCCEEETTTEEEEEESSCCC---
T ss_pred EEEEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCC---cc-ccCCceeccEEEeCCCEEEEEEecCccccc
Confidence 3588889999 888888554322111246889999654321 11 1111 13566777667777777664
Q ss_pred --------cEEEEEccCce--eeeeeccCCc-cccCeEEEEec--CCEEEE-Ee---CCCcEEEEECCCCc-eEEEEEcC
Q 019258 93 --------SLHVLSSAMQV--LLSVDENSGF-HVGPISGVDLT--GSECVS-VG---EDGRVNLVSVIGGG-EFKRVYDG 154 (343)
Q Consensus 93 --------~v~v~~~~~~~--~~~~~~~~~~-h~~~v~~~~~~--~~~~~s-~s---~dg~v~~wd~~~~~-~~~~~~~~ 154 (343)
.|++|++.... ...+... .. |.....++.++ ++.++. .+ .+..|.++|+.++. ....+...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 38888887432 2233322 23 44456788888 666643 33 23589999997753 24444433
Q ss_pred CCccceEEEEeCC-CCEEE-EEeCC---CcEEEEEccccCCCCC--eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 155 NGLVGFNCVKWAS-PTEFV-TGGFG---YGLQWWDLRRAGSGGP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 155 ~~~~~v~~~~~~~-~~~l~-t~~~d---~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.. ..... +.+ +..|+ ....+ +.|..+|+.. +.. ...+..+. ..+. .|+|++..++++.
T Consensus 280 ~~--~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~---~~~~~~~~l~~~~-------~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 280 LD--ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN---PGPAHWRDLIPER-------QQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp SS--SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS---CCGGGCEEEECCC-------SSCE--EEEEETTEEEEEE
T ss_pred CC--ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC---CCccccEEEecCC-------CCEE--EEEEECCEEEEEE
Confidence 32 23333 333 44444 44433 6788999877 332 34455443 2233 7888888888777
Q ss_pred ecCC--cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---CeEEEEecC
Q 019258 228 GSSG--TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GILAVVEQG 302 (343)
Q Consensus 228 ~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~i~~~~~~ 302 (343)
..+| .|++||+... ....+. ....+.+..+.++|++.. .+++.+.. ++|+.|+..
T Consensus 345 ~~~g~~~l~~~d~~g~-~~~~l~----------~p~~~~~~~~~~~~d~~~---------l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 345 MVDATARVEQFDYEGK-RVREVA----------LPGLGSVSGFNGKHDDPA---------LYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EETTEEEEEEECTTSC-EEEEEC----------CSSSSEEEECCCCTTCSC---------EEEEEECSSSCCEEEEECTT
T ss_pred EECCeeEEEEEECCCC-eeEEee----------cCCCceEEeeecCCCCCE---------EEEEecCCCCCCEEEEEECC
Confidence 7777 5888988743 222222 223456777777777663 33333322 678888864
Q ss_pred C
Q 019258 303 E 303 (343)
Q Consensus 303 ~ 303 (343)
.
T Consensus 405 ~ 405 (693)
T 3iuj_A 405 S 405 (693)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-06 Score=73.55 Aligned_cols=228 Identities=10% Similarity=-0.021 Sum_probs=137.9
Q ss_pred CCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce
Q 019258 72 TRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 72 ~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
.......|. +++ ++++...++.|..|+.. .+ ..... .+...+.++.+. ++.+++...++.|..|+.+ ++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~---~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~- 117 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLL---DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ- 117 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEE---ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEe---CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-
Confidence 345678887 566 67788888999999874 32 22221 234567888888 6655555566889999986 42
Q ss_pred EEEEEcC---CCccceEEEEeCC-CCEEEE----EeC-------------CCcEEEEEccccCCCCCeeEEecccCCCCC
Q 019258 148 FKRVYDG---NGLVGFNCVKWAS-PTEFVT----GGF-------------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGK 206 (343)
Q Consensus 148 ~~~~~~~---~~~~~v~~~~~~~-~~~l~t----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (343)
...+... .....+.++.+.+ +..+++ +.. .+.|..+|... ++ +..+. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~-~~~~~-~~----- 187 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SP-LQRMA-DL----- 187 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CC-CEEEE-EE-----
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC---Cc-EEEEe-cC-----
Confidence 3333221 1112467788888 555554 322 25577777654 33 22222 11
Q ss_pred cccCeEEEEEcCCCCeEEEEEec-----CCcEEEEEccCCce--eeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGS-----SGTVFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~-----dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
...+.++|+|++..++++.+. ++.|..||+..... ...+. ....+....+++++++.
T Consensus 188 --~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~----------~~~~~~pdgi~~d~~G~---- 251 (305)
T 3dr2_A 188 --DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA----------SVPDGLPDGFCVDRGGW---- 251 (305)
T ss_dssp --SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE----------CCSSSCCCSEEECTTSC----
T ss_pred --CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE----------ECCCCCCCeEEECCCCC----
Confidence 447889999998866655444 27899999875331 11111 11123345688888765
Q ss_pred CCCCccceEEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
|+.+..+ .|.+|+...+....+..+..+.++.+.+ +++.|..++. +.++.++-
T Consensus 252 -------lwv~~~~-gv~~~~~~g~~~~~~~~~~~~~~~~f~~-d~~~L~it~~-~~l~~~~~ 304 (305)
T 3dr2_A 252 -------LWSSSGT-GVCVFDSDGQLLGHIPTPGTASNCTFDQ-AQQRLFITGG-PCLWMLPL 304 (305)
T ss_dssp -------EEECCSS-EEEEECTTSCEEEEEECSSCCCEEEECT-TSCEEEEEET-TEEEEEEC
T ss_pred -------EEEecCC-cEEEECCCCCEEEEEECCCceeEEEEeC-CCCEEEEEcC-CeEEEEEC
Confidence 4555544 4899998655544444455688888886 4566666654 46776654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-06 Score=76.54 Aligned_cols=252 Identities=11% Similarity=-0.020 Sum_probs=150.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEee-cC------CCCCCceeeeeCCCCCCCCCCccCCC--------CCCee
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY-DT------DADSPSLETHSISLPASLTPHSQWTP--------PTRIS 75 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~-D~------~~~~~~l~~w~~~~~~~~~~~~~~~~--------~~~v~ 75 (343)
.+.+++.+.... |+.+| +++++..++. .. ..+ .+.+||..... ....+.. .....
T Consensus 71 v~~~I~vG~~P~-va~sp----DG~~lyVan~~~~r~~~G~~~~--~VsviD~~t~~---v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 71 VIGMIDGGFLPN-PVVAD----DGSFIAHASTVFSRIARGERTD--YVEVFDPVTLL---PTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEEEEEECSSCE-EEECT----TSSCEEEEEEEEEETTEEEEEE--EEEEECTTTCC---EEEEEEETTCCCCCBSCCGG
T ss_pred EEEEEECCCCCc-EEECC----CCCEEEEEcccccccccCCCCC--EEEEEECCCCe---EEEEEECCCccccccCCCCc
Confidence 455566555555 89999 7776655542 10 001 36789985522 2222221 12466
Q ss_pred EEEcc-CCCeEEEEcC--CCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCC-CceEEE
Q 019258 76 SLSTS-HQSLVAASTL--SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG-GGEFKR 150 (343)
Q Consensus 76 ~v~~~-~~~~l~~~s~--dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~-~~~~~~ 150 (343)
.+.|+ ++++|+++.. ++.|.++|+...+.+...... .+..+.-. ...+++.+.||++.+.++.+ ++ +..
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-----g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~-v~~ 214 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT-PEI 214 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SEEEEEEEETTEEEEEETTSCEEEEECCSSSC-CEE
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-----CcceeecCCCceeEEECCCCCEEEEECCCCCe-EEE
Confidence 78999 8888888764 689999999876655444321 12222222 67888999999999999976 43 322
Q ss_pred EEcCC---CccceE-EEEeCC-CCEEEEEeCCCcEEEEEccccCCCC--CeeEEe--cc-cCCCCCcccCeEEEEEcCCC
Q 019258 151 VYDGN---GLVGFN-CVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGG--PVLQFK--GN-FGSQGKASGMIHSVDIHPSR 220 (343)
Q Consensus 151 ~~~~~---~~~~v~-~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~--~~-~~~~~~~~~~i~~v~~~p~~ 220 (343)
..... ....+. ...|.+ ...++..+.+++|.+.|+.. .. .+..+. .. .-..+...+....++++|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~---~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS---GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT---SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCC---CcceeecceeccccccccccccCCCcceeeECCCC
Confidence 11111 111221 235543 55666688899999999976 22 111121 00 00011112334567778988
Q ss_pred CeEEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE-E
Q 019258 221 KHTCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF-C 290 (343)
Q Consensus 221 ~~~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s-~ 290 (343)
..++++-.. ...|.++|+++.+....+. -...++.|+++|++.. .|++ .
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------------vg~~~~~lavs~D~~~---------~ly~tn 350 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------------MGHEIDSINVSQDEKP---------LLYALS 350 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------------EEEEECEEEECSSSSC---------EEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------------CCCCcceEEECCCCCe---------EEEEEc
Confidence 877766432 2469999999865544443 2347889999999863 4555 4
Q ss_pred ecCCeEEEEecC
Q 019258 291 SEDGILAVVEQG 302 (343)
Q Consensus 291 s~dg~i~~~~~~ 302 (343)
..++.|.++|..
T Consensus 351 ~~~~~VsViD~~ 362 (386)
T 3sjl_D 351 TGDKTLYIHDAE 362 (386)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEEECC
Confidence 668999999975
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-05 Score=70.31 Aligned_cols=254 Identities=10% Similarity=-0.053 Sum_probs=143.9
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeec-CCC----CCCceeeeeCCCCCCCCCCccCCC--------CCCeeEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYD-TDA----DSPSLETHSISLPASLTPHSQWTP--------PTRISSL 77 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D-~~~----~~~~l~~w~~~~~~~~~~~~~~~~--------~~~v~~v 77 (343)
.+.+++.+..- .++++| +++++..+... ... ..-.+.++|... .+....+.. ......+
T Consensus 59 ~~~~i~~g~~p-~i~~sp----Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---~~~~~~i~~~~~~~~~~g~~p~~~ 130 (373)
T 2mad_H 59 ILGHVNGGFLP-NPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVT---FLPIADIELPDAPRFDVGPYSWMN 130 (373)
T ss_pred EEEEecCCCCC-CeEECC----CCCEEEEEeccccccccCCCCCeEEEEECCC---CcEEEEEECCCccccccCCCccce
Confidence 44556655555 888998 78777766421 000 011356788743 111222111 1234578
Q ss_pred Ecc-CCCeEEEEcC--CCcEEEEEccCceeeee-eccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE
Q 019258 78 STS-HQSLVAASTL--SGSLHVLSSAMQVLLSV-DENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY 152 (343)
Q Consensus 78 ~~~-~~~~l~~~s~--dg~v~v~~~~~~~~~~~-~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~ 152 (343)
.++ ++++|+++.. ++.|.++| ...+.+.. ... ..+..+... ...+++.+.||.+.++|. +++......
T Consensus 131 ~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 131 ANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred EECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 888 8888888874 57899999 76554433 221 111122222 567788889999999999 764332211
Q ss_pred c---CCCccce-EEEEeCC-CCEEEEEeCCCcEEEEEccccCCC-CCeeEEecccC---CCCCcccCeEEEEEcCCCCeE
Q 019258 153 D---GNGLVGF-NCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSG-GPVLQFKGNFG---SQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 153 ~---~~~~~~v-~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~ 223 (343)
. ......+ ....+.+ ...++..+..+.+.+.|+.. .. ..+..+..... ..+........+.++|++..+
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA--AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC--CcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 0 0111011 2233444 44444455788999999865 11 11122221100 011111334557899998877
Q ss_pred EEEEe---------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-cC
Q 019258 224 CLAGG---------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-ED 293 (343)
Q Consensus 224 ~~sg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-~d 293 (343)
+++.. .++.|.++|+.+.+....+. -....+.+.|+|++.. .++++. .+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------------~g~~p~~i~~s~Dg~~---------~l~v~~~~~ 340 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGP---------DLYALSAGT 340 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------------CCCCcCeEEECCCCCe---------EEEEEcCCC
Confidence 76543 23579999998855444443 1235789999999884 566766 58
Q ss_pred CeEEEEecC
Q 019258 294 GILAVVEQG 302 (343)
Q Consensus 294 g~i~~~~~~ 302 (343)
+.|.++|..
T Consensus 341 ~~V~ViD~~ 349 (373)
T 2mad_H 341 EVLHIYDAG 349 (373)
T ss_pred CeEEEEECC
Confidence 999999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-06 Score=77.23 Aligned_cols=198 Identities=13% Similarity=0.000 Sum_probs=125.2
Q ss_pred cCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC--cEEEEEccccCC
Q 019258 116 GPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY--GLQWWDLRRAGS 190 (343)
Q Consensus 116 ~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~--~i~iwd~~~~~~ 190 (343)
.....++++ ++.+++...++.|+.||..++ .+..+...... .. ++|++ .+.++.+..++ .|..+|...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~~~~--~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~--- 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPGFKG--GK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS--- 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEETCCB--CB-CEECTTSSEEEEEBSSTTCEEEEEEGGG---
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeeccCCC--Cc-eeEecCCCcEEEEecCCCceEEEEEcCC---
Confidence 356788887 566666667799999999887 35555444332 33 88999 66777777755 788888876
Q ss_pred CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccE--EEE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEV--WEV 268 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v 268 (343)
......+..... .. .....+++++|++..+++ +..++.|+.||....... .+.... ...+...- ..+
T Consensus 204 ~~~~~~~g~~~~-~~--~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~------~~g~~~~~P~~~i 272 (409)
T 3hrp_A 204 GWAPTRIGQLGS-TF--SGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLE------LSGSLGTNPGPYL 272 (409)
T ss_dssp TTCEEEEEECCT-TS--CSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECC------CCSCCCCSSCCEE
T ss_pred CceeEEeeeccc-hh--cCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccc------ccCCCCCCccccE
Confidence 333333311000 00 045788999996556665 566889999998765422 221000 01111222 389
Q ss_pred EEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc---------------cccceeeecCCCCCeeEEcc-
Q 019258 269 QYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP---------------CAINSFDIDPQNPSDVICSL- 332 (343)
Q Consensus 269 ~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~---------------~~i~s~~~~~~~~~~l~~~~- 332 (343)
+|+|++.. .+++-+.+++|+.|+.......+.... ...+.+++++ +|...++-.
T Consensus 273 a~~p~~g~---------lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~ 342 (409)
T 3hrp_A 273 IYYFVDSN---------FYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGF 342 (409)
T ss_dssp EEETTTTE---------EEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETT
T ss_pred EEeCCCCE---------EEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCC
Confidence 99996553 556667788999998764432222211 2367899998 567778877
Q ss_pred CCceEEEEe
Q 019258 333 EWESIAIVS 341 (343)
Q Consensus 333 ~~~~i~~~~ 341 (343)
.+..|+.++
T Consensus 343 ~~~~I~~~~ 351 (409)
T 3hrp_A 343 KGYCLRKLD 351 (409)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 788888886
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.8e-06 Score=71.25 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=125.3
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
-.....|+| ..+.++++...++ .|..|+..... ...+..+..+.++.+. ++.+++ ++.+| |.+|+
T Consensus 50 ~~egp~~~~---~~~~l~~~d~~~~-----~i~~~d~~~~~----~~~~~~~~~v~~i~~~~dg~l~v-~~~~g-l~~~d 115 (326)
T 2ghs_A 50 LGEGPTFDP---ASGTAWWFNILER-----ELHELHLASGR----KTVHALPFMGSALAKISDSKQLI-ASDDG-LFLRD 115 (326)
T ss_dssp BEEEEEEET---TTTEEEEEEGGGT-----EEEEEETTTTE----EEEEECSSCEEEEEEEETTEEEE-EETTE-EEEEE
T ss_pred CCcCCeEeC---CCCEEEEEECCCC-----EEEEEECCCCc----EEEEECCCcceEEEEeCCCeEEE-EECCC-EEEEE
Confidence 457789999 3356666665553 36678775422 1123345679999998 555555 44444 88888
Q ss_pred ccCceeeeeeccCC-ccccCeEEEEec--CCEEEEEeC------CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 99 SAMQVLLSVDENSG-FHVGPISGVDLT--GSECVSVGE------DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 99 ~~~~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
....+...+..... .....++++.++ +..+++... .+.|..++ ++ .......... ....++|++ +
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~--~~~~i~~s~dg 190 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADIS--IPNSICFSPDG 190 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEES--SEEEEEECTTS
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCc--ccCCeEEcCCC
Confidence 76444322222111 112357888888 666555432 24455555 44 3443332222 467899998 5
Q ss_pred CEE-EEEeCCCcEEEEEcc--ccCCC-CC--eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 169 TEF-VTGGFGYGLQWWDLR--RAGSG-GP--VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 169 ~~l-~t~~~d~~i~iwd~~--~~~~~-~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+.+ ++.+.++.|.+||+. . + .. ...+....... .....+++++++. +.++...++.|..||.. ++
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~---Gl~~~~~~~~~~~~~~~----~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~-g~ 261 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDART---GLPTGKAEVFIDSTGIK----GGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GN 261 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTT---CCBSSCCEEEEECTTSS----SEEEEEEECTTSC-EEEEEETTTEEEEECTT-CC
T ss_pred CEEEEEECCCCEEEEEEccccc---CCcccCceEEEECCCCC----CCCCeeEECCCCC-EEEEEeCCCEEEEECCC-CC
Confidence 444 455567899999986 3 2 11 11222111001 4467899999885 55555567899999983 33
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEe-ecCC
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYD-CHTK 275 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~ 275 (343)
.... . ..+...+.+++|. |++.
T Consensus 262 ~~~~-i----------~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 262 HIAR-Y----------EVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EEEE-E----------ECSCSBEEEEEEESTTSC
T ss_pred EEEE-E----------ECCCCCcEEEEEecCCCC
Confidence 3222 2 2234568999998 7665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-06 Score=81.30 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=135.7
Q ss_pred CCCCeeEEEcc-CCCeEEEEc-----CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCc------
Q 019258 70 PPTRISSLSTS-HQSLVAAST-----LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGR------ 136 (343)
Q Consensus 70 ~~~~v~~v~~~-~~~~l~~~s-----~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~------ 136 (343)
+...+..+.|+ ++++|+-+. ....|+++|+.+++.+.... +......+.|+ ++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~----~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL----KDVKFSGISWLGNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----EEEESCCCEEETTTEEEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----CCceeccEEEeCCCEEEEEEecCccccccc
Confidence 33468888999 777776433 22478999998665433210 11112345565 888888877743
Q ss_pred -------EEEEECCCCce-EEEEEcCCC--ccceEEEEeCC-CCEEE-EEeC---CCcEEEEEccccCCCCCeeEEeccc
Q 019258 137 -------VNLVSVIGGGE-FKRVYDGNG--LVGFNCVKWAS-PTEFV-TGGF---GYGLQWWDLRRAGSGGPVLQFKGNF 201 (343)
Q Consensus 137 -------v~~wd~~~~~~-~~~~~~~~~--~~~v~~~~~~~-~~~l~-t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (343)
|.+|++.++.. -..++.... ...+..+.|++ +..++ +.+. ++.|.++|+.. +...+..+....
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~--~~~~~~~l~~~~ 280 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ--ENAPLLTVQGDL 280 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS--TTCCCEEEECSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC--CCCceEEEeCCC
Confidence 99999977531 233443322 21367889999 55553 3332 35899999977 223455555443
Q ss_pred CCCCCcccCeEEEEEcCCCCeEEEEEecC---CcEEEEEccCCce--eeeeecCCCCcccccCCccccEEEEEEeecCCC
Q 019258 202 GSQGKASGMIHSVDIHPSRKHTCLAGGSS---GTVFAWDLRWQQQ--SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 202 ~~~~~~~~~i~~v~~~p~~~~~~~sg~~d---g~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 276 (343)
...... +.+++..+++....+ +.|..+|+..+.. ...+. .|...+. .|++++..
T Consensus 281 -------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-----------~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 281 -------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-----------PERQQVL--TVHSGSGY 339 (693)
T ss_dssp -------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-----------CCCSSCE--EEEEETTE
T ss_pred -------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-----------cCCCCEE--EEEEECCE
Confidence 223333 556666676666554 6799999987532 12222 2444444 88888874
Q ss_pred CcCCCCCccceEEEecCC--eEEEEecCCCcccccc--cccccceeeecCCCCCeeEEccCC----ceEEEEe
Q 019258 277 SNISSSRVLPAMFCSEDG--ILAVVEQGEEPFELLA--EPCAINSFDIDPQNPSDVICSLEW----ESIAIVS 341 (343)
Q Consensus 277 ~~~~~~~~~~l~s~s~dg--~i~~~~~~~~~~~~~~--~~~~i~s~~~~~~~~~~l~~~~~~----~~i~~~~ 341 (343)
.+++...+| .|++|+........+. ....+..+.++++. +.++....+ +.++.++
T Consensus 340 ---------lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~-~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 340 ---------LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDD-PALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ---------EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTC-SCEEEEEECSSSCCEEEEEC
T ss_pred ---------EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCC-CEEEEEecCCCCCCEEEEEE
Confidence 344445565 5788876533222222 23456677777643 444444332 5676664
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-05 Score=69.33 Aligned_cols=221 Identities=13% Similarity=0.045 Sum_probs=129.4
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCcc--ccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc--
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFH--VGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL-- 157 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~-- 157 (343)
++.+++++.++.+..+|..+++.+-........ ..........+..++.+..++.|..+|..+++...........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 568888999999999998765544222211000 0000112222677888888999999999988543333221110
Q ss_pred c---ceEEEEeCC---CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC
Q 019258 158 V---GFNCVKWAS---PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG 231 (343)
Q Consensus 158 ~---~v~~~~~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg 231 (343)
. .+..+...| .+.+..++.++.+..+|.++ ++.+..... .....+... +.. +..++.+|
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t---G~~~w~~~~---------~~~~~~~~~--~~~-l~~~~~~g 287 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS---GQIMWKREL---------GSVNDFIVD--GNR-IYLVDQND 287 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTT---CCEEEEECC---------CCEEEEEEE--TTE-EEEEETTC
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCC---CcEEeeccC---------CCCCCceEE--CCE-EEEEcCCC
Confidence 0 000111122 56788888899999999988 666555431 223444443 334 45678899
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccc
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLA 310 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~ 310 (343)
.+..+|.++++....... .....+...... +. .|+.++.+|.|+.++.... ..+...
T Consensus 288 ~l~~~d~~tG~~~w~~~~----------~~~~~~~~~~~~--~~----------~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 288 RVMALTIDGGVTLWTQSD----------LLHRLLTSPVLY--NG----------NLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp CEEEEETTTCCEEEEECT----------TTTSCCCCCEEE--TT----------EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcEEEeecc----------cCCCcccCCEEE--CC----------EEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 999999988765444331 111122222222 23 6888999999999996533 323222
Q ss_pred c-cccc-ceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 311 E-PCAI-NSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 311 ~-~~~i-~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. ...+ .+..+.. ..|+.++.++.++.+++
T Consensus 346 ~~~~~~~~~~~~~~---~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 346 VDSSGFQTEPVAAD---GKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CCTTCBCSCCEEET---TEEEEEBTTSCEEEEEC
T ss_pred cCCCcceeCCEEEC---CEEEEEeCCCEEEEEeC
Confidence 2 2222 3333343 67888888999999875
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00028 Score=62.90 Aligned_cols=263 Identities=11% Similarity=-0.027 Sum_probs=144.6
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc----------CCCcEEEEEccCceeeeeeccC-Cc---c
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST----------LSGSLHVLSSAMQVLLSVDENS-GF---H 114 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s----------~dg~v~v~~~~~~~~~~~~~~~-~~---h 114 (343)
.+.++|.... +.+..++....- .+.++ +++.|+++. .++.|.+||....+.+...... .. +
T Consensus 48 ~v~v~D~~t~---~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSG---SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCC---eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 4668887542 223334433333 89999 888888875 3678999998754443322211 00 0
Q ss_pred ccCeEEEEec--CCEEEEEeC--CCcEEEEECCCCceEEEE-EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccc
Q 019258 115 VGPISGVDLT--GSECVSVGE--DGRVNLVSVIGGGEFKRV-YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRR 187 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s~--dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~ 187 (343)
...-..+.++ +++++.+.. ++.|.++| .+++ .... +.... ++.+.+ ...+++.+.||.+.++|. .
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~~~-----~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSSPT-----CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcCCCc-----eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 1123467776 888887764 57899999 8885 4443 43222 123333 556778888999999999 7
Q ss_pred cCCCCCeeEEecccCCCCCcccC-eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee-eeecCCCCcccccCCccccE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGM-IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI-VLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~h~~~v 265 (343)
++............ ...+ .....+.+++..+++. +.++.+.+.|+....... ....................
T Consensus 196 ---g~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 196 ---GGAAGAGLVGAMLT--AAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred ---CcEEEEEecccccc--CCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 45442221000000 0022 1234455555555444 367899999986532111 11100000000000012334
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEec----------CCeEEEEecCC-CcccccccccccceeeecCCCCC-eeEEcc-
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSE----------DGILAVVEQGE-EPFELLAEPCAINSFDIDPQNPS-DVICSL- 332 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~----------dg~i~~~~~~~-~~~~~~~~~~~i~s~~~~~~~~~-~l~~~~- 332 (343)
..+.++|++. .++.+.. ++.|.++|... +....+.-.....++.+++ +|+ .++.+.
T Consensus 270 ~~~~~s~d~~----------~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~-Dg~~~l~v~~~ 338 (373)
T 2mad_H 270 QQVAYLKSSD----------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-DGGPDLYALSA 338 (373)
T ss_pred EeEEECCCCC----------EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC-CCCeEEEEEcC
Confidence 4577888876 4454432 35799988753 2323333345689999999 456 566655
Q ss_pred CCceEEEEe
Q 019258 333 EWESIAIVS 341 (343)
Q Consensus 333 ~~~~i~~~~ 341 (343)
.++.|.+++
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 478888875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-05 Score=70.17 Aligned_cols=235 Identities=8% Similarity=-0.036 Sum_probs=132.2
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCc-----cCCCCCCeeEEEcc-CCC
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHS-----QWTPPTRISSLSTS-HQS 83 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~-----~~~~~~~v~~v~~~-~~~ 83 (343)
.+..+. ..+..|+.+| +++.|++... ++. .++ +|.+.+ .....+. ...+-..+.++++. ++.
T Consensus 11 ~v~~~~--~~p~~va~~~----~g~~~v~~~~~~~~--~~~--l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 11 VVAELS--LAPGNITLTP----DGRLFLSLHQFYQP--EMQ--VAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp EEEEES--SCEEEEEECT----TSCEEEEECGGGCC--SCS--EEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSE
T ss_pred EEEEcC--CCcceEEECC----CCCEEEEeCCCCCC--ceE--EEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCc
Confidence 344444 5788999999 8889988643 221 133 555431 1111110 11234578999998 555
Q ss_pred eEEEEcC-----CCcEEEEEccCceeeeeecc---CCccccCeEEEEec--CCE-EEEEe---CCCcEEEEECCCCceEE
Q 019258 84 LVAASTL-----SGSLHVLSSAMQVLLSVDEN---SGFHVGPISGVDLT--GSE-CVSVG---EDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 84 ~l~~~s~-----dg~v~v~~~~~~~~~~~~~~---~~~h~~~v~~~~~~--~~~-~~s~s---~dg~v~~wd~~~~~~~~ 149 (343)
++++-.. ++.|.+||+.+++.+..... ...+......+.+. +.. +++-. .++.|.+||+.+++ ..
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~ 158 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AA 158 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EE
Confidence 5554433 57899999876553332221 11233456788887 344 45555 67899999998774 44
Q ss_pred EEEcCCC----------------------------ccceEEEEeCC-CCEEEEEeCCC-cEEEEEccccCCCCC-----e
Q 019258 150 RVYDGNG----------------------------LVGFNCVKWAS-PTEFVTGGFGY-GLQWWDLRRAGSGGP-----V 194 (343)
Q Consensus 150 ~~~~~~~----------------------------~~~v~~~~~~~-~~~l~t~~~d~-~i~iwd~~~~~~~~~-----~ 194 (343)
+....+. ...+..+++++ +..|..+..++ .|..+|...-..+.. .
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 4443210 01357899999 55666666554 444444321000000 0
Q ss_pred e--EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEee
Q 019258 195 L--QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDC 272 (343)
Q Consensus 195 ~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 272 (343)
. ...+.. +....+++++++ .++++...++.|.+||...++. ..+.. ..+.....+++|.+
T Consensus 239 ~~~~~~g~~-------g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-~~~~~---------~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 239 SKIERYSEK-------PICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-KLLVT---------DEKLSWTDSFNFGS 300 (343)
T ss_dssp TTCEEEEEC-------CSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-EEEEE---------CGGGSCEEEEEECT
T ss_pred cceEecccC-------CCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-EEEEE---------CCceecCCeeEECC
Confidence 0 111111 345678999987 5777888899999999844332 22220 11234577888887
Q ss_pred cCC
Q 019258 273 HTK 275 (343)
Q Consensus 273 ~~~ 275 (343)
++.
T Consensus 301 ~g~ 303 (343)
T 2qe8_A 301 DGY 303 (343)
T ss_dssp TSC
T ss_pred CCc
Confidence 654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-05 Score=69.31 Aligned_cols=225 Identities=8% Similarity=0.027 Sum_probs=128.2
Q ss_pred ccceeeEEecCCCCCCCC-eEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 18 SKYIDAVRWLPPLSPLSK-LAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~-~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
........|.| +++ +++++..++ .|..|+.... .. ......+.+..+.+. +++++++...++.|.
T Consensus 44 ~~~~egp~~~~----~g~~l~~~d~~~~-----~i~~~~~~g~--~~--~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 44 ATWSEGPAWWE----AQRTLVWSDLVGR-----RVLGWREDGT--VD--VLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CSSEEEEEEEG----GGTEEEEEETTTT-----EEEEEETTSC--EE--EEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcCccCCeEeC----CCCEEEEEECCCC-----EEEEEeCCCC--EE--EEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 34567889999 666 555654443 3667776321 11 111234568899998 666666555668899
Q ss_pred EEEccCceeeeeec-cCCccccCeEEEEec--CCEEEE----EeC-------------CCcEEEEECCCCceEEEEEcCC
Q 019258 96 VLSSAMQVLLSVDE-NSGFHVGPISGVDLT--GSECVS----VGE-------------DGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 96 v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s----~s~-------------dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
+|+.. ++...+.. ........++++.+. +..+++ +.. .+.|..+|..+++ ..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~-~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMA-DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE-EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEEEe-cC
Confidence 99875 22221111 111112345677777 666665 321 2457777776553 33332 22
Q ss_pred CccceEEEEeCC-CCEEEEEeCC------CcEEEEEccccCCCCCeeEEecc-cCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 156 GLVGFNCVKWAS-PTEFVTGGFG------YGLQWWDLRRAGSGGPVLQFKGN-FGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
. ....++|++ +..+..+... +.|..||+.. .. +...... .... +....++++++|. +. ++
T Consensus 188 ~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~---~~-l~~~~~~~~~~~----~~pdgi~~d~~G~-lw-v~ 255 (305)
T 3dr2_A 188 D--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD---GA-LHDRRHFASVPD----GLPDGFCVDRGGW-LW-SS 255 (305)
T ss_dssp S--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET---TE-EEEEEEEECCSS----SCCCSEEECTTSC-EE-EC
T ss_pred C--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC---CC-ccCCeEEEECCC----CCCCeEEECCCCC-EE-Ee
Confidence 2 477899999 6556655554 7899999876 22 2221110 0001 3456788999886 44 34
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCC
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDG 294 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg 294 (343)
+.+ .|.+||... +....+. ... .+..++|.|++. .|+.++.++
T Consensus 256 ~~~-gv~~~~~~g-~~~~~~~-----------~~~-~~~~~~f~~d~~----------~L~it~~~~ 298 (305)
T 3dr2_A 256 SGT-GVCVFDSDG-QLLGHIP-----------TPG-TASNCTFDQAQQ----------RLFITGGPC 298 (305)
T ss_dssp CSS-EEEEECTTS-CEEEEEE-----------CSS-CCCEEEECTTSC----------EEEEEETTE
T ss_pred cCC-cEEEECCCC-CEEEEEE-----------CCC-ceeEEEEeCCCC----------EEEEEcCCe
Confidence 444 499999843 3333322 122 478899997766 566666554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-06 Score=71.78 Aligned_cols=247 Identities=9% Similarity=0.029 Sum_probs=136.6
Q ss_pred CCeeEEEcc-CCCeEEEEc--CCCcEEEEEccCceeeeeec---cCCccccCeEEEEec-CCEEEEEe-C-----CCcEE
Q 019258 72 TRISSLSTS-HQSLVAAST--LSGSLHVLSSAMQVLLSVDE---NSGFHVGPISGVDLT-GSECVSVG-E-----DGRVN 138 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s--~dg~v~v~~~~~~~~~~~~~---~~~~h~~~v~~~~~~-~~~~~s~s-~-----dg~v~ 138 (343)
..+..++++ +++++++.. .++.++||.+.+........ ....|...+.++.++ ...+..+. . +..|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 567889998 677777753 23435666665332221111 112355688999998 34444433 2 57899
Q ss_pred EEECCCCceEEEEEcCC-----CccceEEEEeCC-CCE-EEEEe---CCCcEEEEEccccCCCCCeeEEecccCCC----
Q 019258 139 LVSVIGGGEFKRVYDGN-----GLVGFNCVKWAS-PTE-FVTGG---FGYGLQWWDLRRAGSGGPVLQFKGNFGSQ---- 204 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~-l~t~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---- 204 (343)
+||+.+++ ....+... ....+..+++.+ ... +++-. .++.|.+||+.. ++....+..+....
T Consensus 97 ~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 97 AWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSCCSC
T ss_pred EEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC---CCEEEEecCCCccccccc
Confidence 99999884 34433321 112468888886 444 45555 688999999876 33322222110000
Q ss_pred -----C--C-----------cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-eeeeecCCCCcccccCCccccE
Q 019258 205 -----G--K-----------ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-SIVLSGVGTGEAVTHSLSESEV 265 (343)
Q Consensus 205 -----~--~-----------~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v 265 (343)
+ . -...++.++++|++..++++......+..+|...... ....... ...+...++.+..
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~g~p 250 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL--GSKIERYSEKPIC 250 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH--HTTCEEEEECCSC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh--hcceEecccCCCC
Confidence 0 0 0023688999999876665544444666666431100 0000000 0000001123345
Q ss_pred EEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec-CCCcccccccc--cccceeeecCCCCCeeEEccCCc
Q 019258 266 WEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ-GEEPFELLAEP--CAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 266 ~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~-~~~~~~~~~~~--~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
..+++++++. ..++...++.|..|+. ..+...+...+ ....++++++ ++...++.+..+
T Consensus 251 dgia~d~~G~----------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~ 312 (343)
T 2qe8_A 251 DGISIDKDHN----------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLH 312 (343)
T ss_dssp SCEEECTTCC----------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEECCGG
T ss_pred ceEEECCCCC----------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeCccc
Confidence 6789998865 6777788899999998 43332322222 3467899987 456666665443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-08 Score=89.19 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCcc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLV 158 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~ 158 (343)
.++.+++++.||.|+.||..+++.+-.... +++.+..+. +..+++++.||.|..||..+++.... +..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE-CSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee-eeccCcc
Confidence 578899999999999999886665432221 222222222 55777778999999999988743322 2222110
Q ss_pred ceEE-EEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 159 GFNC-VKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 159 ~v~~-~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
.+.+ ........+++++.++.|..||.++ ++.+.++.... ...+.|.+. .+++++.|+.|+.||
T Consensus 82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~t---G~~~w~~~~~~-----------~~~~~p~~~-~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 82 LVQASPCRSSDGILYMGKKQDIWYVIDLLT---GEKQQTLSSAF-----------ADSLSPSTS-LLYLGRTEYTITMYD 146 (369)
T ss_dssp HHTTCSCC-----CCCCEEEEEEEEECCC-------------------------------------EEEEEEEEEEECCC
T ss_pred ccccCceEecCCEEEEEeCCCEEEEEECCC---CcEEEEecCCC-----------cccccccCC-EEEEEecCCEEEEEE
Confidence 0100 0111245677788899999999998 77666655321 123455544 556788999999999
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.++++....+.. .......+.++.. ..+ .++.++.||.|+.||..
T Consensus 147 ~~tG~~~W~~~~-------------~~~~~~~~~~~~~----~~~---~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 147 TKTRELRWNATY-------------FDYAASLPEDDVD----YKM---SHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp SSSSSCCCEEEE-------------EEECCBCCCCCTT----CCC---CEEEEETSCEEEEECTT
T ss_pred CCCCCEEEeEec-------------ccccCccccCCcc----ccc---eEEEECCCCEEEEEECC
Confidence 988765444320 0111222222110 001 57888999999999974
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-05 Score=65.50 Aligned_cols=215 Identities=8% Similarity=-0.035 Sum_probs=135.9
Q ss_pred ccccCCcccc--eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCC--CeeEEEccCCCeEE
Q 019258 11 QVHRFPQSKY--IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPT--RISSLSTSHQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~~--i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~l~ 86 (343)
.+..+|++.. ...+.|+| ++.++++.+..+ ..+|...|+.... .+..+.... ....+.+..+.+.+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~----dg~Lyvstg~~~---~s~v~~iD~~tg~---v~~~i~l~~~~fgeGi~~~g~~lyv 80 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAE----NDTLFESTGLYG---RSSVRQVALQTGK---VENIHKMDDSYFGEGLTLLNEKLYQ 80 (266)
T ss_dssp EEEEEECCTTCCEEEEEECS----TTEEEEEECSTT---TCEEEEEETTTCC---EEEEEECCTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCcccEEEeC----CCeEEEECCCCC---CCEEEEEECCCCC---EEEEEecCCCcceEEEEEeCCEEEE
Confidence 6677888864 68999998 566776655321 1257788885532 222222222 22345555444555
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCV 163 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~ 163 (343)
+.-.++.+.++|..+.+.+...... ...-..+...++.++.+..++.|.++|..+.+....+...... ..+..+
T Consensus 81 ~t~~~~~v~viD~~t~~v~~~i~~g---~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSNIKNFTHQ---MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECC---SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEecCCEEEEEECCCCcEEEEEECC---CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 5556899999999866555443321 1122456667666666667889999999987544444322111 125677
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC------CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEE
Q 019258 164 KWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG------SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWD 237 (343)
Q Consensus 164 ~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd 237 (343)
.|..+..++....++.|.+-|..+ ++.+..+..... .........+.|+++|++..+++++...+++...+
T Consensus 158 e~~dg~lyvn~~~~~~V~vID~~t---g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 158 EYINGEVWANIWQTDCIARISAKD---GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEETTEEEEEETTSSEEEEEETTT---CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEecCCCCeEEEEECCC---CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 777543444444589999999998 777777653210 00000134789999999989999999999999999
Q ss_pred ccCC
Q 019258 238 LRWQ 241 (343)
Q Consensus 238 ~~~~ 241 (343)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8763
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.8e-08 Score=85.70 Aligned_cols=179 Identities=9% Similarity=-0.081 Sum_probs=90.5
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccC
Q 019258 124 TGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFG 202 (343)
Q Consensus 124 ~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (343)
.++.+++++.||.|..||..+++...+. .. . .+.+..+.. +..+++++.|+.|+.||..+ ++.+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-~~-~--~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t---G~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-KE-D--PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN---NEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE-EC-C--CSCCCC-----CCEEECTTTCCEEEC--------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-cC-C--CceecceEcCCCEEEEeCCCCEEEEEECCC---CceeeeeeccCc
Confidence 3788999999999999999998644443 33 2 233333334 44677778999999999988 665554432210
Q ss_pred CCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 203 SQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 203 ~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
.. ....++. . .+ ..+++|+.||.|+.||.++++....+. .+. ...++|++.
T Consensus 81 ~~-~~~sp~~----~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~-----------~~~----~~~~~p~~~------- 131 (369)
T 2hz6_A 81 EL-VQASPCR----S-SD-GILYMGKKQDIWYVIDLLTGEKQQTLS-----------SAF----ADSLSPSTS------- 131 (369)
T ss_dssp HH-HTTCSCC-----------CCCCEEEEEEEEECCC-------------------------------------------
T ss_pred cc-cccCceE----e-cC-CEEEEEeCCCEEEEEECCCCcEEEEec-----------CCC----cccccccCC-------
Confidence 00 0001111 1 12 245678899999999999876654443 111 134566555
Q ss_pred CccceEEEecCCeEEEEecCCC-cccccccccccceeeecCCC--CCeeEEccCCceEEEEeC
Q 019258 283 RVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQN--PSDVICSLEWESIAIVSR 342 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~--~~~l~~~~~~~~i~~~~~ 342 (343)
.+++++.||.|+.||.... ..+..... ...+..++++. ...++.++.++.++.|+.
T Consensus 132 ---~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 132 ---LLYLGRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ----EEEEEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred ---EEEEEecCCEEEEEECCCCCEEEeEecc-cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 6889999999999997432 33322211 12233333310 145667777888888763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0002 Score=63.65 Aligned_cols=229 Identities=13% Similarity=0.025 Sum_probs=126.6
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCc----c--ccCe-EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGF----H--VGPI-SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~----h--~~~v-~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
.++.+++++.++.|..+|..+++.+-....... + ...+ ..+...+..++.++.++.|..+|..+++...+. .
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQT-K 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE-E
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEE-e
Confidence 367888888899999999876554422221100 0 1223 334444888888999999999999988644333 2
Q ss_pred CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 154 GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 154 ~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.... ....... ....++.++.++.|..+|.++ ++.+..+......... ......... + . .++.++.+|.+
T Consensus 131 ~~~~-~~~~p~~-~~~~v~v~~~~g~l~~~d~~t---G~~~W~~~~~~~~~~~--~~~~~~~~~-~-~-~v~~g~~~g~l 200 (376)
T 3q7m_A 131 VAGE-ALSRPVV-SDGLVLIHTSNGQLQALNEAD---GAVKWTVNLDMPSLSL--RGESAPTTA-F-G-AAVVGGDNGRV 200 (376)
T ss_dssp CSSC-CCSCCEE-ETTEEEEECTTSEEEEEETTT---CCEEEEEECCC-------CCCCCCEEE-T-T-EEEECCTTTEE
T ss_pred CCCc-eEcCCEE-ECCEEEEEcCCCeEEEEECCC---CcEEEEEeCCCCceee--cCCCCcEEE-C-C-EEEEEcCCCEE
Confidence 2221 0111111 156788889999999999988 7766665532210000 000111222 2 2 35678889999
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEE---EEEee--cCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE---VQYDC--HTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFE 307 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---v~~~p--~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~ 307 (343)
..+|.++++......... ......+.. +.-.| .+. .++.++.+|.|..++.... ..+
T Consensus 201 ~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~~~~~~~p~~~~~----------~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 201 SAVLMEQGQMIWQQRISQ-------ATGSTEIDRLSDVDTTPVVVNG----------VVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp EEEETTTCCEEEEEECCC------------------CCCCCCEEETT----------EEEEECTTSCEEEEETTTCCEEE
T ss_pred EEEECCCCcEEEEEeccc-------CCCCcccccccccCCCcEEECC----------EEEEEecCcEEEEEECCCCcEEe
Confidence 999998876655543100 000000000 00011 122 5778888899988886432 222
Q ss_pred ccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 308 LLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 308 ~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.... ....++.+.. ..|..++.++.++.++
T Consensus 264 ~~~~-~~~~~~~~~~---~~l~~~~~~g~l~~~d 293 (376)
T 3q7m_A 264 KREL-GSVNDFIVDG---NRIYLVDQNDRVMALT 293 (376)
T ss_dssp EECC-CCEEEEEEET---TEEEEEETTCCEEEEE
T ss_pred eccC-CCCCCceEEC---CEEEEEcCCCeEEEEE
Confidence 2221 2234455543 5667777777777765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-05 Score=69.86 Aligned_cols=255 Identities=9% Similarity=-0.043 Sum_probs=149.5
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeec-C------CCCCCceeeeeCCCCCCCCCCccCCC--------CCCe
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYD-T------DADSPSLETHSISLPASLTPHSQWTP--------PTRI 74 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D-~------~~~~~~l~~w~~~~~~~~~~~~~~~~--------~~~v 74 (343)
..+.+++-+..- .|.++| +++++..+.+. . ..+ .|.++|..... ....+.. ....
T Consensus 110 ~vv~~I~vG~~P-gia~Sp----Dgk~lyVan~~~~~~~~G~~~~--~VsviD~~t~~---vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 110 RILGMTDGGFLP-HPVAAE----DGSFFAQASTVFERIARGKRTD--YVEVFDPVTFL---PIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp EEEEEEEECSSC-EEEECT----TSSCEEEEEEEEEETTEEEEEE--EEEEECTTTCC---EEEEEEETTCCCCCBSCCG
T ss_pred EEEEEEECCCCC-ceEECC----CCCEEEEEeccccccccCCCCC--EEEEEECCCCc---EEEEEECCCccccccCCCc
Confidence 355566666666 899999 77766666531 0 001 36688875422 2222221 1235
Q ss_pred eEEEcc-CCCeEEEEcC--CCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 75 SSLSTS-HQSLVAASTL--SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 75 ~~v~~~-~~~~l~~~s~--dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
..+.|+ ++++|+++.. ++.|.+.|+...+.+...... .+..+... ...+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~-----g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP-----DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC-----CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 678888 8888888764 578999999866554433321 22223223 56778888999999999855532221
Q ss_pred ---EEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCC--eeEEecccC---CCCCcccCeEEEEEcCCCC
Q 019258 151 ---VYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGP--VLQFKGNFG---SQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 151 ---~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~---~~~~~~~~i~~v~~~p~~~ 221 (343)
.+......-...+.+.+ +..++..+..+.+.+.|+.. ... +..+..... ..+........++++|++.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~---~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTA---EGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS---SCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccC---CceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 11111110112345566 66666677889999999865 221 111111000 0000112233478899988
Q ss_pred eEEEEEec---------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-
Q 019258 222 HTCLAGGS---------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS- 291 (343)
Q Consensus 222 ~~~~sg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s- 291 (343)
.++++-.. ++.|.++|+.+.+....+. -....+.|.|+|++.. .++++.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------------vg~~P~gia~spDg~~---------~lyv~n~ 390 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------------LGHEIDSINVSQDAEP---------LLYALSA 390 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------------EEEEECEEEECCSSSC---------EEEEEET
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------------CCCCcCeEEEccCCCE---------EEEEEcC
Confidence 77766432 3579999998865544443 1235889999999873 455555
Q ss_pred cCCeEEEEecCC
Q 019258 292 EDGILAVVEQGE 303 (343)
Q Consensus 292 ~dg~i~~~~~~~ 303 (343)
.++.|.++|...
T Consensus 391 ~s~~VsVID~~t 402 (426)
T 3c75_H 391 GTQTLHIYDAAT 402 (426)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 699999999753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00023 Score=64.27 Aligned_cols=296 Identities=10% Similarity=0.060 Sum_probs=156.6
Q ss_pred CCcccceeeEEecCC-CCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCC-----eeEEEcc---CCC-e
Q 019258 15 FPQSKYIDAVRWLPP-LSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTR-----ISSLSTS---HQS-L 84 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~-~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~-----v~~v~~~---~~~-~ 84 (343)
.|..+-+...+..+. .....+.|++-.-|.+..+..--+..++..... -++-|-+- ..+..++ +.+ +
T Consensus 22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~g---de~HH~gwn~css~~~~~~~~~~~r~~l 98 (462)
T 2ece_A 22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYIN---DELHHFGWNACSSALCPNGKPNIERRFL 98 (462)
T ss_dssp SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSC---CCBCCCEESCCGGGGSTTCCTTCCSCEE
T ss_pred CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCC---CcccccchhhhhhhcccccCCCccCCEE
Confidence 455556666666663 334567888877775322111113332111100 01122111 1111112 234 4
Q ss_pred EEEEcCCCcEEEEEccCc----eeeeeec---cC-CccccCeEEEEec-CCEEEEEeCC------CcEEEEECCCCceEE
Q 019258 85 VAASTLSGSLHVLSSAMQ----VLLSVDE---NS-GFHVGPISGVDLT-GSECVSVGED------GRVNLVSVIGGGEFK 149 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~----~~~~~~~---~~-~~h~~~v~~~~~~-~~~~~s~s~d------g~v~~wd~~~~~~~~ 149 (343)
++.+..++.|+++|+... +.....+ .. +.....-..+... +..++++..+ |.|.+.|..+.+ +.
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~-v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE-PL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC-EE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe-EE
Confidence 555667899999998632 2222221 00 0001112334444 3377776655 789999999885 55
Q ss_pred EEEcCC-Cc-cceEEEEeCC-CCEEEEEe-------------------CCCcEEEEEccccCCCCCeeEEecccCCCCCc
Q 019258 150 RVYDGN-GL-VGFNCVKWAS-PTEFVTGG-------------------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA 207 (343)
Q Consensus 150 ~~~~~~-~~-~~v~~~~~~~-~~~l~t~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (343)
..+... .. .--+.+.|+| .+.+++.. .+.+|.+||+.. .+.+.++..... .
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k~~~tI~vg~~-g--- 250 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RKRIHSLTLGEE-N--- 250 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TEEEEEEESCTT-E---
T ss_pred EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---CcEeeEEecCCC-C---
Confidence 555422 11 1234578888 66677664 479999999987 555555553210 0
Q ss_pred ccCeEEEEE--cCCCCeEEEEEe-----cCCcEEEEEccCCceee-eeecCCCCc---ccc-----cCCccccEEEEEEe
Q 019258 208 SGMIHSVDI--HPSRKHTCLAGG-----SSGTVFAWDLRWQQQSI-VLSGVGTGE---AVT-----HSLSESEVWEVQYD 271 (343)
Q Consensus 208 ~~~i~~v~~--~p~~~~~~~sg~-----~dg~v~iwd~~~~~~~~-~~~~~~~~~---~~~-----~~~h~~~v~~v~~~ 271 (343)
.....+.| +|++...++++- .+++|.+|....+.... ....+.... .+. ..+-......|.++
T Consensus 251 -~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 -RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp -EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred -CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 12334444 999988877776 78889887765422110 000000000 000 00002346789999
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCC-Cccccccc---cc---------------ccceeeecCCCCCeeEEcc
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-EPFELLAE---PC---------------AINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~~~~~~~~---~~---------------~i~s~~~~~~~~~~l~~~~ 332 (343)
|++.. ..++.-..+.|.+++-.. ...++... .. .-..|.+++ +|++|.++.
T Consensus 330 ~DGrf---------LYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 330 LDDKF---------LYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp TTSCE---------EEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCCCE---------EEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 99985 556666778999998532 11222211 11 147788998 678888887
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-05 Score=66.50 Aligned_cols=214 Identities=10% Similarity=0.024 Sum_probs=130.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
+..+..++.++.+..++.. ++....... +...+.++... +..+..++.++.|..+|.. ++..... ..... .+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~-~~~~~-~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT---KKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF-KTNDA-IT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE-ECSSC-CC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC---CCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE-ecCCC-ce
Confidence 5678888888989988876 333222211 22234444555 5567778888999999988 5433333 22222 46
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
.++...+...+..++ +.|..+| .. ++....+.... ..+.++...+++. + ..++.++.+..+|. +
T Consensus 180 ~~~~~d~~g~l~v~t--~~l~~~d-~~---g~~~~~~~~~~-------~~~~~~~~~~~g~-l-~v~t~~~gl~~~~~-~ 243 (330)
T 3hxj_A 180 SAASIGKDGTIYFGS--DKVYAIN-PD---GTEKWNFYAGY-------WTVTRPAISEDGT-I-YVTSLDGHLYAINP-D 243 (330)
T ss_dssp SCCEECTTCCEEEES--SSEEEEC-TT---SCEEEEECCSS-------CCCSCCEECTTSC-E-EEEETTTEEEEECT-T
T ss_pred eeeEEcCCCEEEEEe--CEEEEEC-CC---CcEEEEEccCC-------cceeceEECCCCe-E-EEEcCCCeEEEECC-C
Confidence 666666644566566 8899999 55 55555544322 4577888888763 3 45777888998884 3
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc-ccccceee
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE-PCAINSFD 319 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~-~~~i~s~~ 319 (343)
+.....+. .....+..+...+++ .|+.++.+|.|..++...+..+.... ...+.++.
T Consensus 244 g~~~~~~~-----------~~~~~~~~~~~~~~g-----------~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~ 301 (330)
T 3hxj_A 244 GTEKWRFK-----------TGKRIESSPVIGNTD-----------TIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPV 301 (330)
T ss_dssp SCEEEEEE-----------CSSCCCSCCEECTTS-----------CEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred CCEeEEee-----------CCCCccccceEcCCC-----------eEEEecCCCCEEEECCCCcEEEEEEcCCccccceE
Confidence 33333332 111222334444332 58889999999999864333333332 34577777
Q ss_pred ecCCCCCeeEEccCCceEEEEeC
Q 019258 320 IDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 320 ~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.++ + ..|..|+.++.+++...
T Consensus 302 ~d~-~-g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 302 IDE-N-GTIYFGTRNGKFYALFN 322 (330)
T ss_dssp ECT-T-CCEEEECTTSCEEEEEC
T ss_pred EcC-C-CEEEEEcCCCeEEEEec
Confidence 765 3 46777888899888754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-05 Score=69.16 Aligned_cols=274 Identities=11% Similarity=-0.024 Sum_probs=146.7
Q ss_pred cCCCCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEccCCCe
Q 019258 6 VRTPPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTSHQSL 84 (343)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~ 84 (343)
.++...+|+++.+..+. -+|... .+..+..++.++. |..++ ..... +...... ..+.++....+..
T Consensus 6 ~~~g~~~W~~~~~~~~~---~~~~~d-~~g~l~v~t~~~~-----l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~ 72 (330)
T 3hxj_A 6 VNDCKIKWEFLIGNSID---SSPILA-KNGTIYLGSSNKN-----LYAIN-TDGSV---KWFFKSGEIIECRPSIGKDGT 72 (330)
T ss_dssp ------CCTTTSCEEEC---CCCEEC-TTSCEECSSTTTT-----TEEEC-TTSCE---EESSCGGGEEEECCEETTTTE
T ss_pred cCCceEEEEEeCCCCcc---cCceEc-cCCeEEEEcCCCE-----EEEEC-CCCcE---EEEEecCCCcccceEEecCCc
Confidence 34455777777655432 223211 2334555555543 44566 32211 1111112 2234555444566
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~ 164 (343)
|.+++.+ +..|+.. ++.+.... ..........+.+..+..++.++.|..+|.. ++..... ..... .+.++.
T Consensus 73 l~v~t~~--l~~~d~~-g~~~~~~~---~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~-~~~~~~ 143 (330)
T 3hxj_A 73 IYFGSDK--VYAINPD-GTEKWRFD---TKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRF-KTKKA-IYATPI 143 (330)
T ss_dssp ECCSSCE--EEEECCC-GGGGGGSC---C-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEE-ECSSC-CCSCCE
T ss_pred EEEecCc--EEEECCC-CcEEEEEE---CCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCc-eeeeeE
Confidence 7776666 7777652 22211111 1111112222237778888889999999988 5433333 22222 355556
Q ss_pred eCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee
Q 019258 165 WASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 165 ~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
..+...+..++.++.|..+|... +....+.... ..+.++...+++. ++ .++ +.|..+| .++...
T Consensus 144 ~~~~g~l~vgt~~~~l~~~d~~g----~~~~~~~~~~-------~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~~ 207 (330)
T 3hxj_A 144 VSEDGTIYVGSNDNYLYAINPDG----TEKWRFKTND-------AITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTEK 207 (330)
T ss_dssp ECTTSCEEEECTTSEEEEECTTS----CEEEEEECSS-------CCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCEE
T ss_pred EcCCCEEEEEcCCCEEEEECCCC----CEeEEEecCC-------CceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcEE
Confidence 56555677788889999998742 3334443222 4466777777664 43 444 8899999 554444
Q ss_pred eeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc-cccceeeecCC
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP-CAINSFDIDPQ 323 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~-~~i~s~~~~~~ 323 (343)
.... .....+.++...+++ .++.++.++.|..++......+..... ..+.++.+.+
T Consensus 208 ~~~~-----------~~~~~~~~~~~~~~g-----------~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~- 264 (330)
T 3hxj_A 208 WNFY-----------AGYWTVTRPAISEDG-----------TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGN- 264 (330)
T ss_dssp EEEC-----------CSSCCCSCCEECTTS-----------CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECT-
T ss_pred EEEc-----------cCCcceeceEECCCC-----------eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcC-
Confidence 3332 223457777777654 477788889998887654443333332 2345566654
Q ss_pred CCCeeEEccCCceEEEEe
Q 019258 324 NPSDVICSLEWESIAIVS 341 (343)
Q Consensus 324 ~~~~l~~~~~~~~i~~~~ 341 (343)
+ ..|..++.++.++.++
T Consensus 265 ~-g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 265 T-DTIYFGSYDGHLYAIN 281 (330)
T ss_dssp T-SCEEEECTTCEEEEEC
T ss_pred C-CeEEEecCCCCEEEEC
Confidence 2 4666677777888876
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00037 Score=62.02 Aligned_cols=284 Identities=12% Similarity=0.037 Sum_probs=149.5
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc----------CCCcEEEEEcc
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST----------LSGSLHVLSSA 100 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s----------~dg~v~v~~~~ 100 (343)
++++.+...........-.+.+.|... .+.+..++-..... +.++ ++..|+++. .++.|.+||..
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t---~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCC---CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 467666555442100001466777744 22233333222223 8888 778777765 36789999998
Q ss_pred CceeeeeeccCC---c-cccCeEEEEec--CCEEEEEeC--CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 101 MQVLLSVDENSG---F-HVGPISGVDLT--GSECVSVGE--DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 101 ~~~~~~~~~~~~---~-h~~~v~~~~~~--~~~~~s~s~--dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
+.+.+....... . ....-..+.++ +++++.+.. ++.|.++|+.+.+ +...+.-.. ... .+.. ...+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~g---~~~-~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPD---CYH-IFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS---EEE-EEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECCC---cce-eecCCCcee
Confidence 665443332110 0 00123456666 787777653 6899999999985 554443322 211 1222 6678
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE-EEEEc-CCCCeEEEEEecCCcEEEEEccCCce-eeeee
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH-SVDIH-PSRKHTCLAGGSSGTVFAWDLRWQQQ-SIVLS 248 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~-p~~~~~~~sg~~dg~v~iwd~~~~~~-~~~~~ 248 (343)
++.+.||++.+.++.. .++......... .....++. ...|. +++..++ .+.+|+|++.|+..... .....
T Consensus 193 ~~~~~DG~~~~v~~~~--~g~v~~~~~~~~---~~~~~~~~~~~~~~~~dG~~~~--vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGT--EGTPEITHTEVF---HPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEEETTSCEEEEECCS--SSCCEEEECCCC---SCTTSCBCSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECCCE
T ss_pred EEECCCCCEEEEECCC--CCeEEEeeccee---ccccccccccceeEcCCCcEEE--EeCCCEEEEEECCCCcceeecce
Confidence 8999999999999976 233322111110 00002222 23553 5654333 46689999999975321 11111
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec----------CCeEEEEecCC-Ccccccccccccce
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE----------DGILAVVEQGE-EPFELLAEPCAINS 317 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~----------dg~i~~~~~~~-~~~~~~~~~~~i~s 317 (343)
.+.........-..+....++++|++. .++.... .++|+++|... +....+.-...+++
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~----------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~ 335 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALD----------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDS 335 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTT----------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECE
T ss_pred eccccccccccccCCCcceeeECCCCC----------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcce
Confidence 000000000000122334577788766 3444332 24688888753 33333333457899
Q ss_pred eeecCCCCCeeEEcc-CCceEEEEe
Q 019258 318 FDIDPQNPSDVICSL-EWESIAIVS 341 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~-~~~~i~~~~ 341 (343)
+.++++....|+.+. .++.|.+++
T Consensus 336 lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 336 INVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp EEECSSSSCEEEEEETTTTEEEEEE
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEE
Confidence 999995323555543 367888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00078 Score=56.73 Aligned_cols=217 Identities=6% Similarity=-0.153 Sum_probs=130.5
Q ss_pred CccCCCCCC--eeEEEccCCCeEEEEcC---CCcEEEEEccCceeeeeeccCCccccCeEEEEecCC-EEEEEeCCCcEE
Q 019258 65 HSQWTPPTR--ISSLSTSHQSLVAASTL---SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGS-ECVSVGEDGRVN 138 (343)
Q Consensus 65 ~~~~~~~~~--v~~v~~~~~~~l~~~s~---dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~dg~v~ 138 (343)
+..++|... ...+.|+....|+.++. ++.|+++|+.+.+.+...... .+ .....+.+.++ .+++.-.++.+.
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~-~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DS-YFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TT-CCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CC-cceEEEEEeCCEEEEEEecCCEEE
Confidence 334455543 57899983245655543 579999999866655433221 11 12235666654 455666789999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
++|..+.+...+ +..... .-..++......+ .+..++.|.++|..+ .+.+..+......+.. ...+.+.+.
T Consensus 90 viD~~t~~v~~~-i~~g~~-~g~glt~Dg~~l~-vs~gs~~l~viD~~t---~~v~~~I~Vg~~~~p~--~~~nele~~- 160 (266)
T 2iwa_A 90 IYDRRTLSNIKN-FTHQMK-DGWGLATDGKILY-GSDGTSILYEIDPHT---FKLIKKHNVKYNGHRV--IRLNELEYI- 160 (266)
T ss_dssp EEETTTTEEEEE-EECCSS-SCCEEEECSSSEE-EECSSSEEEEECTTT---CCEEEEEECEETTEEC--CCEEEEEEE-
T ss_pred EEECCCCcEEEE-EECCCC-CeEEEEECCCEEE-EECCCCeEEEEECCC---CcEEEEEEECCCCccc--ccceeEEEE-
Confidence 999998854444 432211 1234655544444 455689999999988 6666666533210100 236677877
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc--cccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA--VTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
++ .+++....++.|.+.|..+++....+...+.... .....-......|+|+|++.. .++++...++|
T Consensus 161 dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~---------lfVTgk~~~~v 230 (266)
T 2iwa_A 161 NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR---------IFVTGKLWPKL 230 (266)
T ss_dssp TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE---------EEEEETTCSEE
T ss_pred CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE---------EEEECCCCCeE
Confidence 45 5777666788999999998654333321000000 000001135689999999886 78888888999
Q ss_pred EEEecC
Q 019258 297 AVVEQG 302 (343)
Q Consensus 297 ~~~~~~ 302 (343)
+..+..
T Consensus 231 ~~i~l~ 236 (266)
T 2iwa_A 231 FEIKLH 236 (266)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 887753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0021 Score=63.16 Aligned_cols=241 Identities=13% Similarity=0.079 Sum_probs=142.3
Q ss_pred eeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE
Q 019258 74 ISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY 152 (343)
Q Consensus 74 v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~ 152 (343)
|.++.......|..++.++-+..|+....+....... .+...|.++... ...+..++.++-+..||..+++ .....
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~--~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~-~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPI--LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE-IKNYL 251 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE-EEEEC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCC--CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe-EEEee
Confidence 7777776345566677665588888764332221111 134568888776 5556666655458999987763 43332
Q ss_pred cCC------CccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEeccc-CCCCCcccCeEEEEEcCCCCeEEE
Q 019258 153 DGN------GLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNF-GSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 153 ~~~------~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
... ....|.++...+.+.+..|+.+ .|.+||... .....+.... .........|.++..++++. +-
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lW 324 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT----DSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MW 324 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT----TEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EE
T ss_pred cCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC----CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EE
Confidence 211 1235899988885566667766 688899765 2333332111 01112225699999999875 34
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP 305 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~ 305 (343)
.|+.++-|..||....... .+..... ........|.++...+++ .|..|+.++.|..++.....
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~~~~----~~~l~~~~V~~i~~d~~g-----------~lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRNIPY----KNSLSDNVVSCIVEDKDK-----------NLWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECCCTT----SSSCSCSSEEEEEECTTS-----------CEEEEESSSCEEEECTTTCC
T ss_pred EEECCCCeEEeCCCcccce-EEcCCCC----CCCCCCCeeEEEEECCCC-----------CEEEEECCCCeEEEcCCCCc
Confidence 6888888999987653321 1110000 001124568999887765 47889998889999876443
Q ss_pred cccccc----------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 306 FELLAE----------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 306 ~~~~~~----------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
...+.. ...|.++..++ ++..|-.|+.++.++.++
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 322211 24578888776 334266666666787775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00057 Score=56.56 Aligned_cols=199 Identities=8% Similarity=-0.091 Sum_probs=117.6
Q ss_pred CccCCCCC--CeeEEEccCCCeEEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEE
Q 019258 65 HSQWTPPT--RISSLSTSHQSLVAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNL 139 (343)
Q Consensus 65 ~~~~~~~~--~v~~v~~~~~~~l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~ 139 (343)
+.+++|.. -...+.|.++.++.+++..| .|+.+|+.+++.+......... ---.+... +..++....++.+.+
T Consensus 12 ~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34456654 46689998655555555544 8999999876655444322111 11344555 555566678999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+|..+.+ ....+..... =..+++.... |+.+..+++|.++|..+ .+.+.++......... ..++-+.+. +
T Consensus 90 ~D~~tl~-~~~ti~~~~~--Gwglt~dg~~-L~vSdgs~~l~~iDp~t---~~~~~~I~V~~~g~~~--~~lNeLe~~-~ 159 (243)
T 3mbr_X 90 YDLATLT-PRARFRYPGE--GWALTSDDSH-LYMSDGTAVIRKLDPDT---LQQVGSIKVTAGGRPL--DNLNELEWV-N 159 (243)
T ss_dssp EETTTTE-EEEEEECSSC--CCEEEECSSC-EEEECSSSEEEEECTTT---CCEEEEEECEETTEEC--CCEEEEEEE-T
T ss_pred EECCcCc-EEEEEeCCCC--ceEEeeCCCE-EEEECCCCeEEEEeCCC---CeEEEEEEEccCCccc--ccceeeEEe-C
Confidence 9999985 4444433322 2456655444 44455689999999988 6666666543211111 345666665 3
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc--CCccccEEEEEEeecCCC
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH--SLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~ 276 (343)
+ .+++....+..|.+.|.++++....+--.+....... ..-....+.|+|+|+...
T Consensus 160 G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 160 G-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp T-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred C-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 4 4776666788999999998654333321110000000 012245789999998774
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0002 Score=59.95 Aligned_cols=198 Identities=12% Similarity=-0.025 Sum_probs=120.7
Q ss_pred CccCCCCCC--eeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEE
Q 019258 65 HSQWTPPTR--ISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVS 141 (343)
Q Consensus 65 ~~~~~~~~~--v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd 141 (343)
+..++|... ...+.|.++.++.+.+.+|.|+++|+.+.+.+... .. . ..--..+... +..++....++.+.++|
T Consensus 46 v~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-G-NIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-T-TCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-C-CcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 344555443 46888887677778888899999999865544333 11 1 1112346666 66666777899999999
Q ss_pred CCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 142 VIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
..+.+...++ ..... -..+++. +..|+.+..+++|.++|..+ .+.+.++......+.. ..++-+.|. +|
T Consensus 123 ~~Tl~~~~ti-~~~~e--GwGLt~D-g~~L~vSdGs~~l~~iDp~T---~~v~~~I~V~~~g~~v--~~lNeLe~~-dG- 191 (268)
T 3nok_A 123 GMPPQRERTT-RYSGE--GWGLCYW-NGKLVRSDGGTMLTFHEPDG---FALVGAVQVKLRGQPV--ELINELECA-NG- 191 (268)
T ss_dssp TTTTEEEEEE-ECSSC--CCCEEEE-TTEEEEECSSSEEEEECTTT---CCEEEEEECEETTEEC--CCEEEEEEE-TT-
T ss_pred CCcCcEEEEE-eCCCc--eeEEecC-CCEEEEECCCCEEEEEcCCC---CeEEEEEEeCCCCccc--ccccccEEe-CC-
Confidence 9998544444 32222 2345544 45566566699999999988 6766666543311111 345677776 45
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccc--cCCccccEEEEEEeecCCC
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVT--HSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~ 276 (343)
.+++....+..|.+.|.++++....+-..+...... ...-..-.+.|+|+|+...
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 577666678899999998865433322100000000 0112245789999998775
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00018 Score=60.16 Aligned_cols=191 Identities=8% Similarity=-0.039 Sum_probs=122.2
Q ss_pred CeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCee
Q 019258 117 PISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVL 195 (343)
Q Consensus 117 ~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 195 (343)
-...+.+. +..+++.+.+|.|+.+|+.+++..... ..... ---.+........+..-.++.+.+||..+ .+.+.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~~g~~Ly~ltw~~~~v~V~D~~T---l~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLASDGERLYQLTWTEGLLFTWSGMP---PQRER 130 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEECSSCEEEEESSSCEEEEEETTT---TEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEEeCCEEEEEEccCCEEEEEECCc---CcEEE
Confidence 34678888 666778889999999999998655555 22221 12346666666677766799999999988 77777
Q ss_pred EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 196 QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
++.... + + ..++ +++..++++- .+++|.++|..+.+....+. +... ..--..++.|.|. ++.
T Consensus 131 ti~~~~--e----G--wGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~-V~~~-----g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 131 TTRYSG--E----G--WGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQ-VKLR-----GQPVELINELECA-NGV 192 (268)
T ss_dssp EEECSS--C----C--CCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEE-CEET-----TEECCCEEEEEEE-TTE
T ss_pred EEeCCC--c----e--eEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEE-eCCC-----CcccccccccEEe-CCE
Confidence 776422 1 2 2333 3456666654 58899999988755433332 1100 0011245777777 332
Q ss_pred CCcCCCCCccceEEEecCCeEEEEecCCCc-ccccc--------------cccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 276 SSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLA--------------EPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 276 ~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~--------------~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
..+..-.++.|.++|..... ...+. ...-.|.++++|+.+.+.++|--|..+|-.
T Consensus 193 ----------lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 193 ----------IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp ----------EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred ----------EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 33444467789888875332 11111 112469999999878899999999888754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00052 Score=57.36 Aligned_cols=199 Identities=8% Similarity=-0.058 Sum_probs=116.8
Q ss_pred CccCCCCCC--eeEEEccCCCeEEEEcCCC--cEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEE
Q 019258 65 HSQWTPPTR--ISSLSTSHQSLVAASTLSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNL 139 (343)
Q Consensus 65 ~~~~~~~~~--v~~v~~~~~~~l~~~s~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~ 139 (343)
+..++|... ...+.|+++.++.+++.+| .|+++|+.+.+.+....... ..--..+... +..++....++.+.+
T Consensus 34 v~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 445566544 4788888655566666666 89999998766554433211 1112345555 444555667999999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+|..+.+...++..... =..+++... .|+.+..+++|.++|..+ .+.+.++......+.. ..++-+.+. +
T Consensus 112 ~D~~t~~~~~ti~~~~e---G~glt~dg~-~L~~SdGs~~i~~iDp~T---~~v~~~I~V~~~g~~~--~~lNELe~~-~ 181 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGE---GWGLTHNDQ-YLIMSDGTPVLRFLDPES---LTPVRTITVTAHGEEL--PELNELEWV-D 181 (262)
T ss_dssp EETTTCCEEEEEECSSC---CCCEEECSS-CEEECCSSSEEEEECTTT---CSEEEEEECEETTEEC--CCEEEEEEE-T
T ss_pred EECccCcEEEEEECCCC---ceEEecCCC-EEEEECCCCeEEEEcCCC---CeEEEEEEeccCCccc--cccceeEEE-C
Confidence 99999864444432222 234554444 444444588899999988 6666666543211111 235557776 4
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccc-cCCccccEEEEEEeecCCC
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVT-HSLSESEVWEVQYDCHTKS 276 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~ 276 (343)
+ .+++....+..|.+.|.++++....+-..+...... ...-....+.|+|+|+...
T Consensus 182 G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 182 G-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp T-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred C-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 4 577766678899999998865443332111000000 0111245689999998774
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0057 Score=60.10 Aligned_cols=246 Identities=9% Similarity=0.070 Sum_probs=144.1
Q ss_pred CCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeecc----CCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCC
Q 019258 71 PTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDEN----SGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 71 ~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~----~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~ 145 (343)
...|.++.......|..|+.++-+..|+....+....... .......|.++... ...+..|..+ -|.+||..++
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD 292 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence 4568887766445566666554488888764332222111 01123568998887 4455555555 4899998776
Q ss_pred ceEEEEEcCC------CccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 146 GEFKRVYDGN------GLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 146 ~~~~~~~~~~------~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
. ........ ....|.++...+.+.+-.|+.++.|..+|... .....+.............|.++..+++
T Consensus 293 ~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 293 S-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR----NRFKNIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp E-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG----GSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred e-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc----ccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence 3 44332111 12368999888866677888889999999866 2233332211111122256999999887
Q ss_pred CCeEEEEEecCCcEEEEEccCCceeeeeecCCCCccccc-CCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 220 RKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTH-SLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
+. +-.|+.++-|..||..+.... .+.. ..... . ......|.++...+++. .|+.++.++.|..
T Consensus 368 g~--lWiGt~~~Gl~~~~~~~~~~~-~~~~-~~~~~--~~~l~~~~v~~i~~d~~g~----------~lWigt~~~Gl~~ 431 (795)
T 4a2l_A 368 KN--LWIGTNDGGLNLYNPITQRFT-SYTL-QEDES--ARGIGSNNIKAVYVDEKKS----------LVYIGTHAGGLSI 431 (795)
T ss_dssp SC--EEEEESSSCEEEECTTTCCEE-EECC-C--------CCSCSCEEEEEEETTTT----------EEEEEETTTEEEE
T ss_pred CC--EEEEECCCCeEEEcCCCCcEE-EEec-CCCCc--ccCCCCccEEEEEEcCCCC----------EEEEEeCcCceeE
Confidence 64 346888888999998764322 1110 00000 0 01235688888876543 2788888888999
Q ss_pred EecCCCccccccc------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 299 VEQGEEPFELLAE------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 299 ~~~~~~~~~~~~~------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++........+.. ...|.++..++ +|...+++ . +.+++++
T Consensus 432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt-~-~Gl~~~~ 477 (795)
T 4a2l_A 432 LHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGT-L-SALVRFN 477 (795)
T ss_dssp EETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEE-S-SCEEEEE
T ss_pred EeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEe-c-CceeEEe
Confidence 9876443332221 24578888776 34544444 3 4566665
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0003 Score=58.78 Aligned_cols=190 Identities=12% Similarity=0.058 Sum_probs=115.8
Q ss_pred eEEEEec-CCEEEEEeCCC--cEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCe
Q 019258 118 ISGVDLT-GSECVSVGEDG--RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPV 194 (343)
Q Consensus 118 v~~~~~~-~~~~~s~s~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~ 194 (343)
...+.+. +..+.+.+.+| .|+.+|+.+++...+. ......---.+........+..-.++.+.++|..+ .+.+
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---~~~~ 120 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQI-ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---LRQV 120 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEE-ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT---CCEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEE-ecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc---CcEE
Confidence 4677777 65667777776 8999999998644444 33322012335544455555555699999999988 7778
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCcc-ccEEEEEEeec
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSE-SEVWEVQYDCH 273 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~ 273 (343)
.++.... . + ..++ +++..++++- .+++|.++|..+.+....+. +. ..+.. ..++.+.|. +
T Consensus 121 ~ti~~~~--e----G--~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~-V~------~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 121 RSFNYDG--E----G--WGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTIT-VT------AHGEELPELNELEWV-D 181 (262)
T ss_dssp EEEECSS--C----C--CCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEE-CE------ETTEECCCEEEEEEE-T
T ss_pred EEEECCC--C----c--eEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEE-ec------cCCccccccceeEEE-C
Confidence 7776422 1 2 2333 4456666553 46789999998755433332 10 01111 335667776 3
Q ss_pred CCCCcCCCCCccceEEEecCCeEEEEecCCCc-cc------cccc-------ccccceeeecCCCCCeeEEccCCceEEE
Q 019258 274 TKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FE------LLAE-------PCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 274 ~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~------~~~~-------~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
+. ..+..-.++.|.++|..... .. +... ....|.++++|+.....++|--|..++-
T Consensus 182 G~----------lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 182 GE----------IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp TE----------EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CE----------EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 32 33444467788888874322 11 1111 1245999999977788888888988774
Q ss_pred E
Q 019258 340 V 340 (343)
Q Consensus 340 ~ 340 (343)
.
T Consensus 252 v 252 (262)
T 3nol_A 252 I 252 (262)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00039 Score=57.56 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=123.6
Q ss_pred ccccCCccc--ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCee--EEEccCCCeEE
Q 019258 11 QVHRFPQSK--YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRIS--SLSTSHQSLVA 86 (343)
Q Consensus 11 ~~~~~~~~~--~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~--~v~~~~~~~l~ 86 (343)
.+..+||+. .+-.+.|.+ +.++.+++.++ ..+|+..|+... +.+.....+.... .+....+.++.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-----~~LyestG~~g---~S~v~~vD~~tg---kv~~~~~l~~~~fgeGi~~~~~~ly~ 79 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-----GHLYESTGETG---RSSVRKVDLETG---RILQRAEVPPPYFGAGIVAWRDRLIQ 79 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-----TEEEEEECCTT---SCEEEEEETTTC---CEEEEEECCTTCCEEEEEEETTEEEE
T ss_pred EEEEcCCCCccccccEEEEC-----CEEEEECCCCC---CceEEEEECCCC---CEEEEEeCCCCcceeEEEEeCCEEEE
Confidence 455677765 466888887 56677666553 235888898553 2333444444443 33444455555
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---cceEEE
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL---VGFNCV 163 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~---~~v~~~ 163 (343)
+.-.++.+.+||..+.+.+...... +.-..++..++.++.+..++.|.++|..+.+...++...... ..+..+
T Consensus 80 ltw~~~~v~v~D~~tl~~~~ti~~~----~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPRARFRYP----GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EESSSSEEEEEETTTTEEEEEEECS----SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEeeCCEEEEEECCcCcEEEEEeCC----CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 5567899999999876665544432 122566667665555566889999999987544443322111 135667
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC------CCcccCeEEEEEcCCCCeEEEEE
Q 019258 164 KWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ------GKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 164 ~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.|..+..++..-.+..|.+.|.++ ++.+..+....... .....-.+.|+++|.+..++++|
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~t---G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPAS---GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTT---CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCC---CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 776555555444688999999998 77766655331100 01114579999999988888776
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0014 Score=55.17 Aligned_cols=191 Identities=7% Similarity=-0.066 Sum_probs=112.7
Q ss_pred CeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE-EEEEeCCCcEEEEEccccCCC
Q 019258 117 PISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE-FVTGGFGYGLQWWDLRRAGSG 191 (343)
Q Consensus 117 ~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~t~~~d~~i~iwd~~~~~~~ 191 (343)
...++.++ ++ .+++-..++.|..++..... ........- .....+++.+ .+. +++-...+.|.++|+..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g---- 110 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDL-GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG---- 110 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTC-CCEEEEEEETTTTEEEEEETTTTEEEEEETTS----
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCC-CCccEEEEEecCCeEEEEECCCCEEEEEEcCC----
Confidence 45778887 44 44555667899999997753 344433221 2578899987 444 44555578999999854
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec--CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS--SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.....+.... . .....++++|++..++++... .+.|..+++... ....+. ......-..++
T Consensus 111 ~~~~~~~~~~----~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~----------~~~~~~P~gia 173 (267)
T 1npe_A 111 TQRRVLFDTG----L--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILA----------QDNLGLPNGLT 173 (267)
T ss_dssp CSCEEEECSS----C--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEE----------CTTCSCEEEEE
T ss_pred CCEEEEEECC----C--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEE----------ECCCCCCcEEE
Confidence 2222222111 1 346899999976677666544 478888887542 222222 11123567899
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
++|++.. ..++....+.|+.++..... ..+.........++++. +...++-...+.|++++
T Consensus 174 ~d~~~~~---------lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~--~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 174 FDAFSSQ---------LCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG--KNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EETTTTE---------EEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred EcCCCCE---------EEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeC--CEEEEEECCCCeEEEEe
Confidence 9998764 45566677899998875322 22222211224555553 24444444556787765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00052 Score=66.38 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccC-C-ccccCeE-EEEecCCEEEEEe------CCCcEEEEECCCCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENS-G-FHVGPIS-GVDLTGSECVSVG------EDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~-~-~h~~~v~-~~~~~~~~~~s~s------~dg~v~~wd~~~~~~~~~~ 151 (343)
.+..+++++.|+.|..+|..+++.+-..... . .....+. +..+.+..++.++ .+|.|..||..+++..-+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3678899999999999999866654222211 0 0001111 1112244444443 3789999999998654444
Q ss_pred EcCC-Cc----------------------------cceEEEEeCC-CCEEEEEeCCCc-------------------EEE
Q 019258 152 YDGN-GL----------------------------VGFNCVKWAS-PTEFVTGGFGYG-------------------LQW 182 (343)
Q Consensus 152 ~~~~-~~----------------------------~~v~~~~~~~-~~~l~t~~~d~~-------------------i~i 182 (343)
.... .. .....+.+.+ .+.+..+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 3211 00 0112467777 677777777653 999
Q ss_pred EEccccCCCCCeeEEecccCC-CCC-cccCeEEEEEcCCCC--eEEEEEecCCcEEEEEccCCcee
Q 019258 183 WDLRRAGSGGPVLQFKGNFGS-QGK-ASGMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
+|.++ ++.+..+...... ... ...+....+...++. ..++.++.+|.++++|.++++..
T Consensus 280 lD~~T---G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 280 VNADT---GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EETTT---CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred EEccC---CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 99998 7877776542110 000 001222222222332 36778999999999999887654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0009 Score=64.54 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccC-Cc-cccCeE-EEEecCCEEEEEeC------CCcEEEEECCCCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENS-GF-HVGPIS-GVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~-~~-h~~~v~-~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~ 151 (343)
.+..+++++.|+.+..+|..+++.+-..... .. ....+. ...+.+..++.++. +|.|..+|..+++..-+.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 3678889999999999999866654322211 00 001111 11122555555443 799999999998655444
Q ss_pred EcCCCc------------------------------cceEEEEeCC-CCEEEEEeCCC-------------------cEE
Q 019258 152 YDGNGL------------------------------VGFNCVKWAS-PTEFVTGGFGY-------------------GLQ 181 (343)
Q Consensus 152 ~~~~~~------------------------------~~v~~~~~~~-~~~l~t~~~d~-------------------~i~ 181 (343)
...... .....+.+++ .+.+..+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 321110 0012466777 66777776553 499
Q ss_pred EEEccccCCCCCeeEEecccCCC---CCcccCeEEEEEcCCCC--eEEEEEecCCcEEEEEccCCceeeee
Q 019258 182 WWDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.+|.++ ++....+.....+. ... ....-+....+|. ..++.++.+|.++++|.++++.....
T Consensus 287 AlD~~T---G~~~W~~~~~~~d~wd~~~~-~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 287 ALDPDT---GKYKWHYQETPGDNWDYTST-QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EECTTT---CCEEEEEESSTTCCSCCCCC-SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEECCC---CCEEEEEecCCCcccccccC-CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 999988 77777665322100 000 1122223333442 56788999999999999887664443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0054 Score=53.09 Aligned_cols=232 Identities=12% Similarity=0.019 Sum_probs=131.6
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCC----------------ccccCeEEEEec--CCEEEEEeCC
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSG----------------FHVGPISGVDLT--GSECVSVGED 134 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~~~s~s~d 134 (343)
..++++. ++.+++++..++.|..|+.............. .......++.+. ...++.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4567777 66668888889999988776432211110000 011346778876 4567666655
Q ss_pred CcEEEEECCCCceEEEEEc---CCCccceEEEEeCC-CCEEEEEeC------------------CCcEEEEEccccCCCC
Q 019258 135 GRVNLVSVIGGGEFKRVYD---GNGLVGFNCVKWAS-PTEFVTGGF------------------GYGLQWWDLRRAGSGG 192 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~t~~~------------------d~~i~iwd~~~~~~~~ 192 (343)
+.+..+|..++. ...+.. .........+++.+ ...+..+.. ++.|..+|... ++
T Consensus 101 ~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~---~~ 176 (322)
T 2fp8_A 101 YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST---KE 176 (322)
T ss_dssp TEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT---TE
T ss_pred CCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC---CE
Confidence 668888876542 222211 11111467788887 554444432 26677788654 22
Q ss_pred CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc--eeeeeecCCCCcccccCCccccEEEEEE
Q 019258 193 PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ--QSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
+..+.... ...+.++++|++..++++-+.++.|..||+.... ....+. . ..+ ...|++
T Consensus 177 -~~~~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~----------~-~~g-P~gi~~ 236 (322)
T 2fp8_A 177 -TTLLLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV----------K-IPN-PGNIKR 236 (322)
T ss_dssp -EEEEEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE----------E-CSS-EEEEEE
T ss_pred -EEEeccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE----------e-CCC-CCCeEE
Confidence 22221111 3356799999987777776778899999987421 111111 1 112 567888
Q ss_pred eecCCCCcCCCCCccceEEEec----------CCeEEEEecCCCcccccccc-----cccceeeecCCCCCeeEEccCCc
Q 019258 271 DCHTKSSNISSSRVLPAMFCSE----------DGILAVVEQGEEPFELLAEP-----CAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~----------dg~i~~~~~~~~~~~~~~~~-----~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
.+++. ..++... .+.|..++...+....+..+ ..+.++... ++...++.....
T Consensus 237 d~~G~----------l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~ 304 (322)
T 2fp8_A 237 NADGH----------FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHG 304 (322)
T ss_dssp CTTSC----------EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCS
T ss_pred CCCCC----------EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCC
Confidence 88765 3333333 46688887754443333322 235556554 346666666677
Q ss_pred eEEEEe
Q 019258 336 SIAIVS 341 (343)
Q Consensus 336 ~i~~~~ 341 (343)
.|.+++
T Consensus 305 ~i~~~~ 310 (322)
T 2fp8_A 305 SVGILV 310 (322)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 887765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00023 Score=63.17 Aligned_cols=269 Identities=9% Similarity=-0.041 Sum_probs=147.6
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCC-----CCCCceeeeeCCCCCCCCCCccCCCC--------CCee
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTD-----ADSPSLETHSISLPASLTPHSQWTPP--------TRIS 75 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~-----~~~~~l~~w~~~~~~~~~~~~~~~~~--------~~v~ 75 (343)
...+.+++-+..- .+.++| +++++..+..... .+.-.|.++|.... +....++.+ ....
T Consensus 56 ~~v~~~i~vG~~P-~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 56 GVTLGHSLGAFLS-LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp TEEEEEEEECTTC-EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCSCCBSCCTT
T ss_pred CeEEEEEeCCCCC-ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCC---CEEEEEECCCccccccCCCcc
Confidence 3456666666655 789999 7766666653100 00014779998552 223333221 2456
Q ss_pred EEEcc-CCCeEEEEcC--CCcEEE--EEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCC----C
Q 019258 76 SLSTS-HQSLVAASTL--SGSLHV--LSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIG----G 145 (343)
Q Consensus 76 ~v~~~-~~~~l~~~s~--dg~v~v--~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~----~ 145 (343)
.+.++ ++++|+++.. +..+.+ +|... +..... +.+..+... ...+++.+.||.+.+.|+.+ .
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-----~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-----ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-----SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-----CCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 88888 8888888864 457888 87764 211111 011112223 55677778899999889876 2
Q ss_pred ceEEE----EEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCC-eeEEecccC---CCCCcccCeEEEEEc
Q 019258 146 GEFKR----VYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGP-VLQFKGNFG---SQGKASGMIHSVDIH 217 (343)
Q Consensus 146 ~~~~~----~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~---~~~~~~~~i~~v~~~ 217 (343)
.+... .+.-... +. .......++..+. +.+.+.|+.. .... +..+..... ..+........++++
T Consensus 200 ~~v~~~~t~~i~vg~~-P~---~~~~~~~~~~vs~-~~V~viD~~~--~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQ-AA---QANYPGMLVWAVA-SSILQGDIPA--AGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSC-CE---EETTTTEEEECBS-SCCEEEECCS--SCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCC-cc---ccccCCEEEEEcC-CEEEEEECCC--CcceEEEEEEeccccccccccccCcceeeEEc
Confidence 11111 0101111 22 2333566666667 9999999865 1111 111111000 000011122237899
Q ss_pred CCCCeEEEEEe-c-------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 218 PSRKHTCLAGG-S-------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 218 p~~~~~~~sg~-~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
|++..++++.. . ++.+.++|+.+.+....+. -....+.|.|+|++.. .+++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~------------vg~~p~gi~~s~Dg~~---------l~va 331 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------------NGHDSDAIIAAQDGAS---------DNYA 331 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------------EEEEECEEEECCSSSC---------EEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE------------CCCCcceEEECCCCCE---------EEEE
Confidence 99888776544 1 2356699998865433332 1235889999999875 5677
Q ss_pred Ee-cCCeEEEEecCCC-cccccccccccceeeec
Q 019258 290 CS-EDGILAVVEQGEE-PFELLAEPCAINSFDID 321 (343)
Q Consensus 290 ~s-~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~ 321 (343)
+. .++.|.++|.... ......-...-..+.++
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence 77 6999999997532 22222223334445544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0077 Score=53.77 Aligned_cols=221 Identities=6% Similarity=-0.082 Sum_probs=128.5
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccc
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVG 159 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~ 159 (343)
..|+.+ ....|+.+++.......+.. ......+++|. ++ .+++-...+.|..+++.... ...+...... .
T Consensus 88 ~~l~~~-~~~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~-~ 160 (386)
T 3v65_B 88 PVLLFA-NRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLE-S 160 (386)
T ss_dssp CEEEEE-CBSCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEECSSCS-C
T ss_pred ceeEee-cCccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEeCCCC-C
Confidence 344443 34567777776433222222 22346788887 44 44555577889999988763 3344332211 3
Q ss_pred eEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-CcEEEE
Q 019258 160 FNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-GTVFAW 236 (343)
Q Consensus 160 v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-g~v~iw 236 (343)
...+++.+ +..+++-...+.|.+.++.. .....+.... . .....++++|.+..++.+-..+ +.|..+
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg----~~~~~l~~~~----l--~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDG----AHRKVLLWQS----L--EKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTS----CSCEEEECSS----C--SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCC----CceEEeecCC----C--CCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 55677775 44556666678888888754 2222222111 1 4478999999888888776666 889999
Q ss_pred EccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccc
Q 019258 237 DLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCA 314 (343)
Q Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~ 314 (343)
++... ....+. ...-..-..|+++|++.. ..++-+..+.|+.++..... ..+... ...
T Consensus 231 ~~dG~-~~~~~~----------~~~~~~PnGlavd~~~~~---------lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 231 SMDGS-GRRIIA----------DTHLFWPNGLTIDYAGRR---------MYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp ETTSC-SCEEEE----------CSSCSCEEEEEEEGGGTE---------EEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred eCCCC-CcEEEE----------ECCCCCeeeEEEeCCCCE---------EEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 98642 222222 112234678999988774 44555667789988875332 233322 223
Q ss_pred cceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 315 INSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 315 i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
...+++.. +...++-...+.|..+++
T Consensus 291 P~giav~~--~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 291 PFAITVFE--DSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred ceEEEEEC--CEEEEeeCCCCeEEEEEC
Confidence 45666654 244455555667777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.002 Score=54.21 Aligned_cols=182 Identities=8% Similarity=-0.047 Sum_probs=106.1
Q ss_pred EEEEEeCCCcEEEEECCCCce----EEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEccccCCCCCeeEEecc
Q 019258 127 ECVSVGEDGRVNLVSVIGGGE----FKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
.|+.+.. +.|..++++.... ....+..... ....+++++ .+.+. +-...+.|..+|+.. .. ...+...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~-~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---~~-~~~~~~~ 76 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAK-VIIGLAFDCVDKVVYWTDISEPSIGRASLHG---GE-PTTIIRQ 76 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEE-EEEEEEEETTTTEEEEEETTTTEEEEEESSS---CC-CEEEECT
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCC-cEEEEEEecCCCEEEEEECCCCEEEEEecCC---CC-cEEEEEC
Confidence 3444333 4688888765421 0112211111 478899988 55444 444578999999865 33 2333211
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCC
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNIS 280 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 280 (343)
. . .....++++|.+..++++...++.|.++|+.... ...+. .........++++|++.
T Consensus 77 ~----~--~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~----------~~~~~~P~~i~vd~~~g----- 134 (267)
T 1npe_A 77 D----L--GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF----------DTGLVNPRGIVTDPVRG----- 134 (267)
T ss_dssp T----C--CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE----------CSSCSSEEEEEEETTTT-----
T ss_pred C----C--CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE----------ECCCCCccEEEEeeCCC-----
Confidence 1 1 3478999999877888887788899999986422 22222 11123457899999766
Q ss_pred CCCccceEEEec---CCeEEEEecCCCcccccc-c-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 281 SSRVLPAMFCSE---DGILAVVEQGEEPFELLA-E-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 281 ~~~~~~l~s~s~---dg~i~~~~~~~~~~~~~~-~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.|+.+.. .+.|+.++........+. . ....+.++++++.+...++-...+.|++++
T Consensus 135 -----~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 135 -----NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp -----EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----EEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 3444433 468888776543322222 2 234678899884333445555567888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00072 Score=61.00 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=110.9
Q ss_pred EEEEEeCCCcEEEEECCCC---ceEEEEEc------CCCccceEEEEeCCCCEEEEEeCC------CcEEEEEccccCCC
Q 019258 127 ECVSVGEDGRVNLVSVIGG---GEFKRVYD------GNGLVGFNCVKWASPTEFVTGGFG------YGLQWWDLRRAGSG 191 (343)
Q Consensus 127 ~~~s~s~dg~v~~wd~~~~---~~~~~~~~------~~~~~~v~~~~~~~~~~l~t~~~d------~~i~iwd~~~~~~~ 191 (343)
.++++-.+++|.++|+.+. .++...++ ......-..+...|...++++..+ +.|.+.|..+ .
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T---~ 174 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYS---F 174 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTT---C
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCC---C
Confidence 4556778899999999643 13444442 111113455666784477777666 7899999988 6
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-------------------cCCcEEEEEccCCceeeeeecCCC
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-------------------SSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-------------------~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+.+.++....... ..-..+.|+|.+..+ ++.. .+.+|.+||+.+.+....+. .+
T Consensus 175 ~v~~~~~~~~~~~----~~~Yd~~~~p~~~~m-vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-vg- 247 (462)
T 2ece_A 175 EPLGKWEIDRGDQ----YLAYDFWWNLPNEVL-VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-LG- 247 (462)
T ss_dssp CEEEECCSBCTTC----CCCCCEEEETTTTEE-EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-SC-
T ss_pred eEEEEEccCCCCc----cccceEEECCCCCEE-EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe-cC-
Confidence 7666665332111 224458889988744 4442 36899999998753332322 11
Q ss_pred CcccccCCccccEEEEEE--eecCCCCcCCCCCccceEEEe-----cCCeEEEEecCCCcc------c--------ccc-
Q 019258 253 GEAVTHSLSESEVWEVQY--DCHTKSSNISSSRVLPAMFCS-----EDGILAVVEQGEEPF------E--------LLA- 310 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~--~p~~~~~~~~~~~~~~l~s~s-----~dg~i~~~~~~~~~~------~--------~~~- 310 (343)
. ....-..|.| +|++.. ..+++- .+++|.+|....... . .+.
T Consensus 248 ------~-~g~~P~~i~f~~~Pdg~~---------aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 248 ------E-ENRMALELRPLHDPTKLM---------GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp ------T-TEEEEEEEEECSSTTCCE---------EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred ------C-CCCccceeEeeECCCCCE---------EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 1 1233456666 998874 444555 667887765432110 0 000
Q ss_pred --c-----ccccceeeecCCCCCeeEEccC-CceEEEEe
Q 019258 311 --E-----PCAINSFDIDPQNPSDVICSLE-WESIAIVS 341 (343)
Q Consensus 311 --~-----~~~i~s~~~~~~~~~~l~~~~~-~~~i~~~~ 341 (343)
. ......+.+++ +|++|-.+.. .+.|.+++
T Consensus 312 ~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp GGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEE
T ss_pred cccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence 0 13467888998 5677766654 35777765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0018 Score=62.38 Aligned_cols=141 Identities=12% Similarity=-0.013 Sum_probs=83.9
Q ss_pred cEEEEECCCCceEEEEEcCCCc-------cceEEEEeCC-C---CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC-
Q 019258 136 RVNLVSVIGGGEFKRVYDGNGL-------VGFNCVKWAS-P---TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS- 203 (343)
Q Consensus 136 ~v~~wd~~~~~~~~~~~~~~~~-------~~v~~~~~~~-~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~- 203 (343)
.|..+|.++++..-.....+.. .....+.... + ..++.++.+|.+.++|.++ ++.+..+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t---G~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN---GKFISAKNFVPVNW 360 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT---CCEEEEEESSCCSS
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC---CCEeccccccccCc
Confidence 5999999998644333222110 0111122111 2 5688888999999999988 7776655421100
Q ss_pred -CC--CcccC------------------------eEEEEEcCCCCeEEEEEec---------------------------
Q 019258 204 -QG--KASGM------------------------IHSVDIHPSRKHTCLAGGS--------------------------- 229 (343)
Q Consensus 204 -~~--~~~~~------------------------i~~v~~~p~~~~~~~sg~~--------------------------- 229 (343)
.+ ....+ -..++++|+...++ +...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~y-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY-LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE-EEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEE-EeChhcceeeecccccccccccccccccccc
Confidence 00 00000 12567888765444 3322
Q ss_pred ----------------CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC
Q 019258 230 ----------------SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED 293 (343)
Q Consensus 230 ----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d 293 (343)
.|.|..||+++++....+. +..+++...+...+. .++.++.|
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------------~~~~~~~g~~~~~g~----------~v~~g~~d 497 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE------------HVSPWNGGTLTTAGN----------VVFQGTAD 497 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE------------ESSSCCCCEEEETTT----------EEEEECTT
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecC------------CCCCCcCcceEeCCC----------EEEEECCC
Confidence 2789999998877665554 233444555666655 67888999
Q ss_pred CeEEEEecC
Q 019258 294 GILAVVEQG 302 (343)
Q Consensus 294 g~i~~~~~~ 302 (343)
|.++.||..
T Consensus 498 g~l~a~D~~ 506 (677)
T 1kb0_A 498 GRLVAYHAA 506 (677)
T ss_dssp SEEEEEETT
T ss_pred CcEEEEECC
Confidence 999999975
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0016 Score=58.95 Aligned_cols=136 Identities=15% Similarity=-0.007 Sum_probs=87.3
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe----------CCCcEEEEEccccCCCCCeeEEecccCC
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG----------FGYGLQWWDLRRAGSGGPVLQFKGNFGS 203 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (343)
+.|.+.|+.+.+ +...+..... + .+.++| ++.+..+. .++.|.++|..+ .+.+.++......
T Consensus 99 ~~VsVID~~t~~-vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGR-ILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---FLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTE-EEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEEEETTCC
T ss_pred CeEEEEECCCCE-EEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---CcEEEEEECCCcc
Confidence 799999999985 4444443333 4 899999 55555554 477999999988 6777666532000
Q ss_pred CCCcccCeEEEEEcCCCCeEEEEEec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCC
Q 019258 204 QGKASGMIHSVDIHPSRKHTCLAGGS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSS 282 (343)
Q Consensus 204 ~~~~~~~i~~v~~~p~~~~~~~sg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~ 282 (343)
+.........+.++|++.+++++... ++.|.+.|+.+.+....+. .. + . ....|++..
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~----------v~--g-~--~~~~p~g~~------ 230 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD----------VP--D-C--YHIFPASPT------ 230 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE----------CC--S-E--EEEEEEETT------
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE----------cC--C-c--eeeccCCCc------
Confidence 00000224578999999888766543 6889999999865443333 11 1 1 334555544
Q ss_pred CccceEEEecCCeEEEEec
Q 019258 283 RVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 283 ~~~~l~s~s~dg~i~~~~~ 301 (343)
.+++.+.||++...+.
T Consensus 231 ---~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 231 ---VFYMNCRDGSLARVDF 246 (426)
T ss_dssp ---EEEEEETTSSEEEEEC
T ss_pred ---EEEEEcCCCCEEEEEC
Confidence 6677778888777665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.012 Score=50.79 Aligned_cols=220 Identities=8% Similarity=-0.062 Sum_probs=126.6
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCC---CceEEEEEcCCCcc
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIG---GGEFKRVYDGNGLV 158 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~---~~~~~~~~~~~~~~ 158 (343)
|+.+. ...|+..++...+...+.. ......+++|+ ++ .+++-...+.|..+++.. +.....+....-.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~- 77 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ- 77 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS-
T ss_pred EEEEC-CCeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC-
Confidence 34433 3468888887543333322 22356788887 44 455556678999999876 1222333322211
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-CcEEE
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-GTVFA 235 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-g~v~i 235 (343)
....+++.+ ++.+++-...+.|.+.|+.. .....+..... .....++++|.+..++.+.... +.|..
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g----~~~~~~~~~~~------~~P~~iavdp~~g~ly~~d~~~~~~I~~ 147 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG----VKRKTLFRENG------SKPRAIVVDPVHGFMYWTDWGTPAKIKK 147 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS----SSEEEEEECTT------CCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCC----CceEEEEECCC------CCcceEEeCCCCCEEEEEccCCCCeEEE
Confidence 356777775 44556656788999999754 33333322111 4478999999877787776554 78998
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-ccccc---
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAE--- 311 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~--- 311 (343)
.++.. .....+. ...-..-..|+++|++.. ..++-+..+.|..++...... .+...
T Consensus 148 ~~~dG-~~~~~~~----------~~~~~~P~gla~d~~~~~---------lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~ 207 (316)
T 1ijq_A 148 GGLNG-VDIYSLV----------TENIQWPNGITLDLLSGR---------LYWVDSKLHSISSIDVNGGNRKTILEDEKR 207 (316)
T ss_dssp EETTS-CCEEEEE----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred EcCCC-CCeEEEE----------ECCCCCceEEEEeccCCE---------EEEEECCCCeEEEEecCCCceEEEeecCCc
Confidence 88854 2222222 112245678999988774 444556677899988754322 22221
Q ss_pred ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 312 PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 312 ~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
......++++. +...++-...+.|..+++
T Consensus 208 ~~~P~giav~~--~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 208 LAHPFSLAVFE--DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp TSSEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred cCCcEEEEEEC--CEEEEEECCCCeEEEEeC
Confidence 12235667764 245555555667777653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0017 Score=62.72 Aligned_cols=160 Identities=9% Similarity=0.059 Sum_probs=97.2
Q ss_pred EEEcc-CCCeEEEEcCCCc-------------------EEEEEccCceeeeeeccCCcc-------ccCeE--EEEecCC
Q 019258 76 SLSTS-HQSLVAASTLSGS-------------------LHVLSSAMQVLLSVDENSGFH-------VGPIS--GVDLTGS 126 (343)
Q Consensus 76 ~v~~~-~~~~l~~~s~dg~-------------------v~v~~~~~~~~~~~~~~~~~h-------~~~v~--~~~~~~~ 126 (343)
.+.+. +.++++.++.++. |..+|..+++.+-..... .| ..+.. .+.+.+.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeeccCCc
Confidence 45665 5688888888764 889998866554322211 12 12222 2333343
Q ss_pred ---EEEEEeCCCcEEEEECCCCceEEEEEcCCCc-------------------------------------cceEEEEeC
Q 019258 127 ---ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL-------------------------------------VGFNCVKWA 166 (343)
Q Consensus 127 ---~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~-------------------------------------~~v~~~~~~ 166 (343)
.++.++.+|.+.++|..+++.+......... ..-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 6888999999999999998644222111100 001125667
Q ss_pred C-CCEEEEEeC---------------------------------------------CCcEEEEEccccCCCCCeeEEecc
Q 019258 167 S-PTEFVTGGF---------------------------------------------GYGLQWWDLRRAGSGGPVLQFKGN 200 (343)
Q Consensus 167 ~-~~~l~t~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~ 200 (343)
| ...+..... ++.|+.||+.+ ++.+.++...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t---G~~~W~~~~~ 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK---QQAAWEVPYV 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT---TEEEEEEEES
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC---CCeEeEccCC
Confidence 7 455554421 37799999988 7766666543
Q ss_pred cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 201 FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 201 ~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
. +...-.+...+. +++.|+.||.++.||.++++....+.
T Consensus 475 ~--------~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 475 T--------IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp S--------SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred C--------CccCccceECCC-EEEEECCCCcEEEEECCCCccceeee
Confidence 2 122223333443 56778999999999999987766664
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0054 Score=58.89 Aligned_cols=112 Identities=11% Similarity=0.034 Sum_probs=65.4
Q ss_pred CCCeEEEEeecCCC------CCCceeeeeCCCCCCCCCCccCC--CCCCeeEEEcc-CCCeEEEEcC-CCcEEEEEccCc
Q 019258 33 LSKLAVLAIYDTDA------DSPSLETHSISLPASLTPHSQWT--PPTRISSLSTS-HQSLVAASTL-SGSLHVLSSAMQ 102 (343)
Q Consensus 33 ~~~~l~t~s~D~~~------~~~~l~~w~~~~~~~~~~~~~~~--~~~~v~~v~~~-~~~~l~~~s~-dg~v~v~~~~~~ 102 (343)
++++++.|+.+... ....+++||...... ..+..++ +.....++++. ++.+++.|+. +..+.+||....
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence 67888999876532 112467888865432 2233222 22233446665 7788888874 568999998754
Q ss_pred eeeeeeccCCccccCeEEEEe-cCCEEEEEe-CC-----CcEEEEECCCCc
Q 019258 103 VLLSVDENSGFHVGPISGVDL-TGSECVSVG-ED-----GRVNLVSVIGGG 146 (343)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~~~~-~~~~~~s~s-~d-----g~v~~wd~~~~~ 146 (343)
+-..+.... ........... .++.++.|+ .+ ..+.+||..+.+
T Consensus 276 ~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 276 SWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 333222211 11112234445 488888888 44 568999998763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0058 Score=57.10 Aligned_cols=188 Identities=12% Similarity=0.035 Sum_probs=119.5
Q ss_pred CCCeEEEE-cCCCcEEEEEccCceeeeeeccCCccccCeEEEEe---c-CCEEEEEe------------------CCCcE
Q 019258 81 HQSLVAAS-TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL---T-GSECVSVG------------------EDGRV 137 (343)
Q Consensus 81 ~~~~l~~~-s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~---~-~~~~~s~s------------------~dg~v 137 (343)
++++|+.. ..++.|.+.|+...+...+.... .......+.+ - +++++.++ .++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 44555444 45778999999876655544322 1224566665 2 77777774 34678
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC--------------------------------------
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY-------------------------------------- 178 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~-------------------------------------- 178 (343)
.+.|..+.+...++..+. . ...++.++ +..+++++.+.
T Consensus 178 tvID~~t~~v~~qI~Vgg-~--pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-N--LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESS-C--CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCC-C--ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 999999875444443322 2 34455666 66666666543
Q ss_pred cEEEEEccccCCCCC-eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce-----------eee
Q 019258 179 GLQWWDLRRAGSGGP-VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-----------SIV 246 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-----------~~~ 246 (343)
.|.+.|.+.. .+.. +..+... ...+++.++|+|.++++++-.+.+|.++|+.+... ...
T Consensus 255 ~V~VID~~~~-~~~~~~~~Ipvg--------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 255 GVKVVDGRKE-ASSLFTRYIPIA--------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TEEEEECSGG-GCCSSEEEEEEE--------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred cEEEEeCccc-CCceeEEEEecC--------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 3666666540 0122 2233211 34778999999999999998999999999986421 111
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.. .-...-+.++|+|++ . ..++.-.|+.|..|+...
T Consensus 326 ~v-----------~vG~gP~h~aF~~dG-~---------aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EP-----------ELGLGPLHTAFDGRG-N---------AYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CC-----------BCCSCEEEEEECTTS-E---------EEEEETTTTEEEEEEHHH
T ss_pred Ec-----------CCCCCcceEEECCCC-e---------EEEEEecCCcEEEEEhhH
Confidence 11 112457899999998 5 677888999999999654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.022 Score=50.07 Aligned_cols=229 Identities=7% Similarity=-0.078 Sum_probs=130.6
Q ss_pred eEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEE
Q 019258 75 SSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 75 ~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
.|........|+.+ ....|+..++.......+.. ......+++|+ .+ .+++-...+.|..+++.... ...+
T Consensus 37 ~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~ 110 (349)
T 3v64_C 37 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEV 110 (349)
T ss_dssp CEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred cccccccCceeEee-cccceEEEeCCCCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEE
Confidence 34443333444444 33457777766433222221 12346888887 44 44555577889999987753 3333
Q ss_pred EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 152 YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
....-. ....+++.+ +..+++-...+.|.+.++.. .....+.... . .....++++|.+..++.+-..
T Consensus 111 ~~~~~~-~p~glavd~~~g~ly~~d~~~~~I~~~~~dG----~~~~~l~~~~----l--~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 111 VSTGLE-SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG----AHRKVLLWQS----L--EKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp ECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECTT----C--SCEEEEEEETTTTEEEEEECS
T ss_pred EeCCCC-CccEEEEecCCCeEEEEcCCCCeEEEEcCCC----CceEEEEeCC----C--CCcceEEEecCcCeEEEeccC
Confidence 332211 356777776 44556666688999998855 2222222111 1 447899999987788887776
Q ss_pred C-CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cc
Q 019258 230 S-GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FE 307 (343)
Q Consensus 230 d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~ 307 (343)
+ +.|..+++... ....+. ...-..-..|+++|++.. ..++-+..+.|+.++..... ..
T Consensus 180 ~~~~I~r~~~dG~-~~~~~~----------~~~~~~PnGla~d~~~~~---------lY~aD~~~~~I~~~~~dG~~~~~ 239 (349)
T 3v64_C 180 NTPRIEASSMDGS-GRRIIA----------DTHLFWPNGLTIDYAGRR---------MYWVDAKHHVIERANLDGSHRKA 239 (349)
T ss_dssp SSCEEEEEETTSC-SCEESC----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCEEEEEeCCCC-CcEEEE----------ECCCCCcceEEEeCCCCE---------EEEEECCCCEEEEEeCCCCceEE
Confidence 6 88999988642 222222 111234678999987774 44455667789888865432 23
Q ss_pred cccc-ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 308 LLAE-PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 308 ~~~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+... ......+++.. +...++-...+.|..+++
T Consensus 240 ~~~~~~~~P~giav~~--~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 240 VISQGLPHPFAITVFE--DSLYWTDWHTKSINSANK 273 (349)
T ss_dssp EECSSCSSEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCceEEEEEC--CEEEEecCCCCeEEEEEc
Confidence 3322 22345666643 244444445567766653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.023 Score=49.89 Aligned_cols=177 Identities=6% Similarity=-0.097 Sum_probs=106.3
Q ss_pred eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCccc
Q 019258 132 GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASG 209 (343)
Q Consensus 132 s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (343)
+....|+..++.... ...+..... ....++|++ .+.| ++-...+.|..+++.. .. ...+.... . .
T Consensus 50 ~~~~~I~~i~~~g~~-~~~~~~~~~--~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g---~~-~~~~~~~~----~--~ 116 (349)
T 3v64_C 50 ANRIDIRQVLPHRSE-YTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRILRANLNG---SN-VEEVVSTG----L--E 116 (349)
T ss_dssp ECBSCEEEECTTSCC-EEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTS---CS-CEEEECSS----C--S
T ss_pred ecccceEEEeCCCCe-eEEeecCCC--ceEEEEEeccccEEEEEeccCCceEEEecCC---CC-ceEEEeCC----C--C
Confidence 344557777877653 444444333 488999997 4444 4445578888888865 22 23332111 0 3
Q ss_pred CeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 210 MIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 210 ~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
....+++++.+..++.+-...+.|.+.++... ....+. ...-..-..|+++|.+.. ..++
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~----------~~~l~~P~~iavdp~~g~---------ly~t 176 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLL----------WQSLEKPRAIALHPMEGT---------IYWT 176 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE----------CTTCSCEEEEEEETTTTE---------EEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEE----------eCCCCCcceEEEecCcCe---------EEEe
Confidence 35688999877788888888889999998653 222222 112244688999987663 4444
Q ss_pred EecC-CeEEEEecCCCccccc-cc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 290 CSED-GILAVVEQGEEPFELL-AE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 290 ~s~d-g~i~~~~~~~~~~~~~-~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
-... +.|+..+.+......+ .. -..-+.++++++.+...++=...+.|+.++
T Consensus 177 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 4455 7888887654333322 22 234578888874434444444455676654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.63 E-value=0.033 Score=49.91 Aligned_cols=222 Identities=8% Similarity=-0.056 Sum_probs=126.1
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCE-EEEEeCCCcEEEEECCCCc---eEEEEEcCCC
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSE-CVSVGEDGRVNLVSVIGGG---EFKRVYDGNG 156 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~-~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~ 156 (343)
.+|+.+ ....|+..++.......+.. ....+.+++|+ ++. +++-...+.|..+++.... ....+....-
T Consensus 84 ~~ll~~-~~~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp CEEEEE-ETTEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred ceeEEe-ccceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 344443 34678887877443332222 33467888887 444 4455567888888886521 1233333222
Q ss_pred ccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec-CCcE
Q 019258 157 LVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS-SGTV 233 (343)
Q Consensus 157 ~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~-dg~v 233 (343)
.....+++.+ .+.+++-...+.|.+.|+.. .....+..... .....|+++|.+..++.+-.. .+.|
T Consensus 159 -~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g----~~~~~l~~~~~------~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 159 -QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG----VKRKTLFRENG------SKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEECTTT----CSEEEEEECSS------CCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred -CCcccEEEEecCCceEEEECCCCeEEEEeCCC----CceEEEEeCCC------CCcceEEEecccCeEEEEeCCCCCEE
Confidence 2477788776 45555556688899888755 33333322111 447899999987777776543 4789
Q ss_pred EEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-cccccc
Q 019258 234 FAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAEP 312 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~~ 312 (343)
...++.. .....+. ...-..-..|+++|++.. ..++-+..+.|+..+...... .+....
T Consensus 228 ~~~~~dG-~~~~~~~----------~~~l~~P~glavd~~~~~---------lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 228 KKGGLNG-VDIYSLV----------TENIQWPNGITLDLLSGR---------LYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EEEETTS-CSCEEEE----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EEEeCCC-CccEEEE----------ECCCCceEEEEEEeCCCE---------EEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 9998864 2322332 112245688999988773 334445667898888754332 222221
Q ss_pred ---cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 313 ---CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 313 ---~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
....++++.. +...++-...+.|..+++
T Consensus 288 ~~l~~P~gl~v~~--~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 288 KRLAHPFSLAVFE--DKVFWTDIINEAIFSANR 318 (400)
T ss_dssp STTSSEEEEEEET--TEEEEEESSSCSEEEEES
T ss_pred CCCCCCEEEEEeC--CEEEEecCCCCeEEEEEc
Confidence 2234666654 234444445567776653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.021 Score=55.66 Aligned_cols=198 Identities=11% Similarity=0.005 Sum_probs=105.7
Q ss_pred ceeeEEec-CCCCCCCCeEEEEeecCCCCCCceeeeeCCCC-CCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC-----
Q 019258 20 YIDAVRWL-PPLSPLSKLAVLAIYDTDADSPSLETHSISLP-ASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS----- 91 (343)
Q Consensus 20 ~i~~v~w~-p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~-~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d----- 91 (343)
.+...+|+ | +++++|-+..........|+++++.+. .. +.. ..+....++.|+ +++.|+....+
T Consensus 175 ~~~~~~~S~P----DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPP----EHDLVAFSVDMSGNEVYTIEFKRISDPSQT---IAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTT----TTCEEEEEEESSSSSCEEEEEEETTCTTCC---CCC-CEEEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EEeeeEecCC----CCCEEEEEEeCCCCceEEEEEEECCCCCEe---CCc-cccCceeeEEEecCCCEEEEEEECCCCCC
Confidence 57788999 8 888888665432112235889999654 31 110 111224567888 66666666554
Q ss_pred CcEEEEEccCce--eeeeeccCCccccCeEEEEec--CCEEEEEe---CCCcEEEEECCCCc-eE--EEEEcCCCccceE
Q 019258 92 GSLHVLSSAMQV--LLSVDENSGFHVGPISGVDLT--GSECVSVG---EDGRVNLVSVIGGG-EF--KRVYDGNGLVGFN 161 (343)
Q Consensus 92 g~v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s---~dg~v~~wd~~~~~-~~--~~~~~~~~~~~v~ 161 (343)
..|.++++...+ ...+... .+..-...+.|+ ++.|+..+ ....|.++|+.++. .. ..+...... ...
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~ 323 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG-VRY 323 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEEC--CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT-CCE
T ss_pred CEEEEEECCCCchhcEEEEec--CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC-ceE
Confidence 246666665432 1222221 122345677888 77776544 23457788887642 23 333332322 466
Q ss_pred EEEeCCCCEEEEEeC-C--C--cEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE--
Q 019258 162 CVKWASPTEFVTGGF-G--Y--GLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV-- 233 (343)
Q Consensus 162 ~~~~~~~~~l~t~~~-d--~--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v-- 233 (343)
.+.|+.+..|+..+. + + .|..+|+.. ...... +..+.. . ..+..+.+. +..++++...+|..
T Consensus 324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~---~~~~~~~li~~~~-~----~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ---PSDWSHVLVDHSE-D----VFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEEETTTEEEEEECTTTCTTCEEEEEETTS---TTCCCCEEECCCS-S----EEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC---cccceeeEECCCC-C----cEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 677666555544443 3 3 455566543 122222 222210 0 235556654 46788888888864
Q ss_pred EEEEc
Q 019258 234 FAWDL 238 (343)
Q Consensus 234 ~iwd~ 238 (343)
.++|+
T Consensus 394 ~~~dl 398 (751)
T 2xe4_A 394 WTMMA 398 (751)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45564
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.033 Score=48.12 Aligned_cols=180 Identities=9% Similarity=-0.094 Sum_probs=102.8
Q ss_pred CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccC
Q 019258 133 EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGM 210 (343)
Q Consensus 133 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (343)
....|+..|+.+.. ...+..... ...++.|++ .+ .+++-...+.|..+|+.....+.....+.... . ..
T Consensus 8 ~~~~I~~i~~~~~~-~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~----~--~~ 78 (316)
T 1ijq_A 8 NRHEVRKMTLDRSE-YTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----I--QA 78 (316)
T ss_dssp CBSSEEEEETTSCC-CEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----C--SC
T ss_pred CCCeEEEEECCCcc-eEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC----C--CC
Confidence 34568999998764 444443333 588999987 44 44555557899999875400001222222111 0 23
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
...+++++.+..++++-..++.|.++|+.. .....+. .........++++|.+.. .+++.
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~----------~~~~~~P~~iavdp~~g~---------ly~~d 138 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF----------RENGSKPRAIVVDPVHGF---------MYWTD 138 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE----------ECTTCCEEEEEEETTTTE---------EEEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE----------ECCCCCcceEEeCCCCCE---------EEEEc
Confidence 578899887777888877889999999864 3322332 111235678999987663 33443
Q ss_pred ecC-CeEEEEecCCCccccc-cc-ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SED-GILAVVEQGEEPFELL-AE-PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~d-g~i~~~~~~~~~~~~~-~~-~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
... +.|+..+.+......+ .. -...+.++++++.+...++=...+.|+.++
T Consensus 139 ~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEe
Confidence 333 6788777654333222 22 234678888874433334444445676654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.077 Score=51.91 Aligned_cols=237 Identities=11% Similarity=-0.000 Sum_probs=136.2
Q ss_pred CCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeec-----------cCCccccCeEEEEec-CCEEEEEeCCCcEEE
Q 019258 72 TRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDE-----------NSGFHVGPISGVDLT-GSECVSVGEDGRVNL 139 (343)
Q Consensus 72 ~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~ 139 (343)
..|.++.......|..|+..+-|.+++.....-..... ........|.++... ...+-.|..++-|..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~ 337 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF 337 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence 46888887656667778775567888876332111110 011234578888887 555666776777999
Q ss_pred EECCCCceEEEEEc--------CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCe
Q 019258 140 VSVIGGGEFKRVYD--------GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMI 211 (343)
Q Consensus 140 wd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i 211 (343)
++..+.. ...... .-....|.++...+.+.+-.|+.++.|..||... . ....+... .......|
T Consensus 338 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~---~-~~~~~~~~---~~~~~~~v 409 (781)
T 3v9f_A 338 ISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK---R-VAIYNKEN---RELLSNSV 409 (781)
T ss_dssp ECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE---E-EEECC--------CCCSBE
T ss_pred eCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC---C-eEEEccCC---CCCCCcce
Confidence 9987652 222211 1112258899888756677788778899999765 1 11111100 01112569
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS 291 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s 291 (343)
.++...+++. + ..|+.++-+..+|.++... ..+.. . ......|.++...+++ .|+.++
T Consensus 410 ~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~-~~~~~-~-------~~~~~~v~~i~~d~~g-----------~lwigt 467 (781)
T 3v9f_A 410 LCSLKDSEGN-L-WFGTYLGNISYYNTRLKKF-QIIEL-E-------KNELLDVRVFYEDKNK-----------KIWIGT 467 (781)
T ss_dssp EEEEECTTSC-E-EEEETTEEEEEECSSSCEE-EECCS-T-------TTCCCCEEEEEECTTS-----------EEEEEE
T ss_pred EEEEECCCCC-E-EEEeccCCEEEEcCCCCcE-EEecc-C-------CCCCCeEEEEEECCCC-----------CEEEEE
Confidence 9999888764 3 4577777899999865432 12110 0 1124578888877654 466666
Q ss_pred cCCeEEEEecCCCccccccc-------ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 292 EDGILAVVEQGEEPFELLAE-------PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 292 ~dg~i~~~~~~~~~~~~~~~-------~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
. +.|..++........... ...|.++..++ +|...++ +..+.++.++
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~~~Gl~~~~ 521 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIG-TFGGGVGIYT 521 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEE-ESSSCEEEEC
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEE-EcCCCEEEEe
Confidence 6 568888765433222211 24578888776 4444444 4434466554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.097 Score=51.17 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=135.7
Q ss_pred CCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE
Q 019258 72 TRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 72 ~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~ 150 (343)
..|.++.......|..|+.++-+..|+...................|.++... ...+..+..++.|..+|..+++ ...
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~ 441 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQI 441 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEE
Confidence 45888877644567777766668888876322111111011234578888877 5556667776779999987763 433
Q ss_pred EEc-CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 151 VYD-GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 151 ~~~-~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
... ......|.++...+.+.+..|+. +.|..+|... ++ ...+..... .......|.++...+++. + -.|+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~---~~-~~~~~~~~~-~~~~~~~i~~i~~d~~g~-l-Wigt~ 513 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS---KK-VIHHYDTSN-SQLLENFVRSIAQDSEGR-F-WIGTF 513 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSS---SS-CCEEECTTT-SSCSCSCEEEEEECTTCC-E-EEEES
T ss_pred eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC---Ce-EEecccCcc-cccccceeEEEEEcCCCC-E-EEEEc
Confidence 321 11222688988887666777776 6688899866 22 223321110 001125699999998875 3 34666
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL 309 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~ 309 (343)
++-+..||.+... ...+.. . .......|.++...+++. |..++.+|-+..++........+
T Consensus 514 ~~Gl~~~~~~~~~-~~~~~~-~------~~l~~~~i~~i~~d~~g~-----------lWi~T~~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 514 GGGVGIYTPDMQL-VRKFNQ-Y------EGFCSNTINQIYRSSKGQ-----------MWLATGEGLVCFPSARNFDYQVF 574 (781)
T ss_dssp SSCEEEECTTCCE-EEEECT-T------TTCSCSCEEEEEECTTSC-----------EEEEETTEEEEESCTTTCCCEEE
T ss_pred CCCEEEEeCCCCe-EEEccC-C------CCCCCCeeEEEEECCCCC-----------EEEEECCCceEEECCCCCcEEEc
Confidence 4558889876532 222220 0 011245688888876654 66666666547787654433333
Q ss_pred cc-----ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 310 AE-----PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 310 ~~-----~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
.. ...|.++..++ +|..-++ +..+ |..+
T Consensus 575 ~~~~gl~~~~i~~i~~d~-~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 575 QRKEGLPNTHIRAISEDK-NGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp CGGGTCSCCCCCEEEECS-SSCEEEE-CSSC-EEEE
T ss_pred cccCCCCCceEEEEEECC-CCCEEEE-cCCc-eEEE
Confidence 22 13578888776 4444444 4443 4444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.049 Score=46.59 Aligned_cols=233 Identities=6% Similarity=0.017 Sum_probs=124.8
Q ss_pred CccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC-C-cEEE
Q 019258 65 HSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED-G-RVNL 139 (343)
Q Consensus 65 ~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d-g-~v~~ 139 (343)
+..++.......++|. ++.++++-..++.|..|+.... ....... .+...++.+. ++.+++.... + .|..
T Consensus 25 ~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~----~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 25 ITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV----EGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC----SSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC----CCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 3344444567788998 6666666667888888876632 2221111 1356788887 6655554433 2 4666
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCCCCE-EEEEeCCCcEEEEEccccCCCC-CeeEEecc----cCCCCCcccCeEE
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWASPTE-FVTGGFGYGLQWWDLRRAGSGG-PVLQFKGN----FGSQGKASGMIHS 213 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~ 213 (343)
+|..+++ ...+...........++..+... +++-..++.|..+|... +. .+...... ...... ...+.
T Consensus 100 ~d~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~---~~~~v~~~~~~~~~~~~~~~~--~~png 173 (306)
T 2p4o_A 100 LVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ---PSGSIWLEHPMLARSNSESVF--PAANG 173 (306)
T ss_dssp EECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT---TEEEEEEECGGGSCSSTTCCS--CSEEE
T ss_pred EcCCCCe-EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC---CcEeEEEECCccccccccCCC--CcCCC
Confidence 7777764 43333222211234455445444 44444588888888754 21 11111100 000001 23455
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEccC-Cce-eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe
Q 019258 214 VDIHPSRKHTCLAGGSSGTVFAWDLRW-QQQ-SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS 291 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s 291 (343)
+ +|++..++++-...++|..+|+.. +.. ...... . ......|++++++. ..++..
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---------~--~~~P~gi~vd~dG~----------l~va~~ 230 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---------E--QTNIDDFAFDVEGN----------LYGATH 230 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---------E--SCCCSSEEEBTTCC----------EEEECB
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---------c--cCCCCCeEECCCCC----------EEEEeC
Confidence 5 677778888888889999999864 111 011110 0 12345678888765 455556
Q ss_pred cCCeEEEEecCCCcccc--cccc-cccceeeecC--CCCCeeEEc
Q 019258 292 EDGILAVVEQGEEPFEL--LAEP-CAINSFDIDP--QNPSDVICS 331 (343)
Q Consensus 292 ~dg~i~~~~~~~~~~~~--~~~~-~~i~s~~~~~--~~~~~l~~~ 331 (343)
..+.|.+++...+...+ ...+ ....++++.+ .+++.|..+
T Consensus 231 ~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 231 IYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp TTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred CCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 67889999875433222 1222 3467888872 233444443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.018 Score=55.32 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCc-cccCeE-EEEecCCEEEEEeC------CCcEEEEECCCCceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGF-HVGPIS-GVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~-h~~~v~-~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~ 153 (343)
++.+++++.|+.|..+|..+++.+-....... ....+. ...+.+..++.+.. +|.|..+|..+++..-+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 57888899999999999886655422221100 000111 11122445554432 68999999999865444432
Q ss_pred CCCc-----------------------------cceEEEEeCC-CCEEEEEeCCC-------------------cEEEEE
Q 019258 154 GNGL-----------------------------VGFNCVKWAS-PTEFVTGGFGY-------------------GLQWWD 184 (343)
Q Consensus 154 ~~~~-----------------------------~~v~~~~~~~-~~~l~t~~~d~-------------------~i~iwd 184 (343)
.... .....+++.+ .+.+..++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1100 0012356777 66777777665 389999
Q ss_pred ccccCCCCCeeEEecccCCC-CC-cccCeEEEEEcCCCC--eEEEEEecCCcEEEEEccCCcee
Q 019258 185 LRRAGSGGPVLQFKGNFGSQ-GK-ASGMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
.++ ++...++....... .. ...+.....+..++. .+++.++.+|.++++|.++++..
T Consensus 277 ~~t---G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 277 PDT---GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTT---CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCC---CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 988 77777665321000 00 002222223222342 35778999999999999887654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.054 Score=50.97 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccc--cCeE-EEEecCCEEEEEeC------CCcEEEEECCCCceEEEE
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHV--GPIS-GVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~-~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~ 151 (343)
.+..+++++.|+.+..+|..+++.+-..... .+. ..+. ...+.+..++.++. ++.|..+|..+++..-+.
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 3678888999999999998766544222211 110 0111 11122455555554 799999999998654444
Q ss_pred EcCCCcc------------------------------------ceEEEEeCC-CCEEEEEeCC----------------C
Q 019258 152 YDGNGLV------------------------------------GFNCVKWAS-PTEFVTGGFG----------------Y 178 (343)
Q Consensus 152 ~~~~~~~------------------------------------~v~~~~~~~-~~~l~t~~~d----------------~ 178 (343)
....... ....+++.+ .+.+..+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 3221100 001244555 4555555432 3
Q ss_pred cEEEEEccccCCCCCeeEEecccCCC---CCcccCeEEEEEcCCCC--eEEEEEecCCcEEEEEccCCceeeee
Q 019258 179 GLQWWDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIHPSRK--HTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~p~~~--~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
.|..+|.++ ++.+.++....... .....++. +...+++. .+++.++.+|.++++|.++++.....
T Consensus 273 ~v~Ald~~t---G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 273 TIWGRDLDT---GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEEEETTT---CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEecCC---CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 588999988 77776665321100 00012222 22223453 45677899999999999887655443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.36 E-value=0.061 Score=46.50 Aligned_cols=216 Identities=6% Similarity=-0.087 Sum_probs=120.8
Q ss_pred CCcEEEEEccCce-eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 91 SGSLHVLSSAMQV-LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 91 dg~v~v~~~~~~~-~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
...|+..++.... ...... .......+++|. +..+.+-...+.|..++..............-. ....+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~---~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~-~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV---GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE---EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS-CCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEe---cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC-CccEEEEE
Confidence 4578888887431 111110 112345678887 445556567788999988765211111111111 35567776
Q ss_pred C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-cCCcEEEEEccCCce
Q 019258 167 S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-SSGTVFAWDLRWQQQ 243 (343)
Q Consensus 167 ~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~dg~v~iwd~~~~~~ 243 (343)
+ +..+++-...+.|.++++.. .....+.... . .....++++|.+..++.+-. ..+.|...++.. ..
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG----~~~~~l~~~~--~----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~ 156 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDG----SLRKVLFWQE--L----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SS 156 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS----CSCEEEECSS--C----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CS
T ss_pred cCCCeEEEEECCCCEEEEEECCC----CcEEEEEeCC--C----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CC
Confidence 5 45556666688999999854 2223332111 1 45789999997767776653 367898888764 22
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc-ccccceeeec
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE-PCAINSFDID 321 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~-~~~i~s~~~~ 321 (343)
...+. ...-..-+.|+++|++.. ..++=+..+.|+.++..... ..+... ......++++
T Consensus 157 ~~~~~----------~~~l~~Pnglavd~~~~~---------lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~ 217 (318)
T 3sov_A 157 RFIII----------NSEIYWPNGLTLDYEEQK---------LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF 217 (318)
T ss_dssp CEEEE----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE
T ss_pred eEEEE----------ECCCCCccEEEEeccCCE---------EEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 22222 111234578999997764 44455667789988875332 222221 2234566666
Q ss_pred CCCCCeeEEccCCceEEEEeC
Q 019258 322 PQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. + ...++-...+.|..+++
T Consensus 218 ~-~-~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 218 E-D-ILYWTDWSTHSILACNK 236 (318)
T ss_dssp T-T-EEEEEETTTTEEEEEET
T ss_pred C-C-EEEEEecCCCeEEEEEC
Confidence 4 1 33444444567776654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.14 Score=50.13 Aligned_cols=216 Identities=7% Similarity=-0.063 Sum_probs=121.6
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCc---eEEEEEcCCCccceEEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGG---EFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~---~~~~~~~~~~~~~v~~~ 163 (343)
....|+..++.......+.. ....+.++++. +..+++-...+.|+.+++.... ....++... ......|
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GL 476 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGL 476 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEE
T ss_pred cccceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-CCCccee
Confidence 44567777776433222222 23456788886 4455566667888888886521 123333312 1146677
Q ss_pred EeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-CcEEEEEccC
Q 019258 164 KWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-GTVFAWDLRW 240 (343)
Q Consensus 164 ~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-g~v~iwd~~~ 240 (343)
++.+ .+++++-...+.|.+.++.. .....+.... . .....|+++|....++.+-..+ +.|...++..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG----~~~~~l~~~~----l--~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKG----VKRKTLFREN----G--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS----SSEEEEEECT----T--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCC----CeEEEEEeCC----C--CCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 7776 45666666789999999855 3333333211 1 4488999999877787775444 7899998864
Q ss_pred CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccc---cccc
Q 019258 241 QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEP---CAIN 316 (343)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~---~~i~ 316 (343)
.....+. ...-..-..|++++.... ..++=...+.|+..+..... ..+.... ....
T Consensus 547 -~~~~~lv----------~~~l~~P~GLavD~~~~~---------LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~ 606 (791)
T 3m0c_C 547 -VDIYSLV----------TENIQWPNGITLDLLSGR---------LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF 606 (791)
T ss_dssp -CCEEEEE----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred -CceEEEE----------eCCCCCceEEEEecCCCe---------EEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC
Confidence 3333333 122346788999987763 33444556678888775433 2332221 1234
Q ss_pred eeeecCCCCCeeEEccCCceEEEEeC
Q 019258 317 SFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+|++.. +...++-...+.|..+++
T Consensus 607 glav~~--~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 607 SLAVFE--DKVFWTDIINEAIFSANR 630 (791)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEET
T ss_pred EEEEeC--CEEEEEECCCCEEEEEeC
Confidence 666654 133333334466666553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0066 Score=53.80 Aligned_cols=197 Identities=9% Similarity=0.017 Sum_probs=112.4
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceee--eeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLET--HSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~--w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v 96 (343)
.....+.++| +++++..+.+... + .+.+ +|... +..++.++.+ .+.......+++.+.||.+.+
T Consensus 124 ~~P~~ia~Sp----DGk~lyVan~~~~-~--~v~V~~iD~~t------v~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 124 PRVHIIGNCA----SSACLLFFLFGSS-A--AAGLSVPGASD------DQLTKSASCF-HIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CCTTSEEECT----TSSCEEEEECSSS-C--EEEEEETTTEE------EEEEECSSCC-CCEEEETTEEECCCCTTSCEE
T ss_pred CCcceEEEcC----CCCEEEEEccCCC-C--eEEEEEEchhh------ceEEECCCce-EEccCCCeEEEEEcCCCCEEE
Confidence 3466778888 8888887765321 1 2445 77733 1222222221 111124456667778888888
Q ss_pred EEccC----ceeeeee--ccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc-eEEEEEcCC-------Cc--cc
Q 019258 97 LSSAM----QVLLSVD--ENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG-EFKRVYDGN-------GL--VG 159 (343)
Q Consensus 97 ~~~~~----~~~~~~~--~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~-~~~~~~~~~-------~~--~~ 159 (343)
.++.. ...+... ........+. . .. +..++..+. +.|.+.|+.... .+...+... .. ..
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~--~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q--ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE-E--ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc-c--cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 88864 1212110 0111123344 2 33 666666666 899999986532 122211110 00 01
Q ss_pred eEEEEeCC-CCEEEEEeC---------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-
Q 019258 160 FNCVKWAS-PTEFVTGGF---------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG- 228 (343)
Q Consensus 160 v~~~~~~~-~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~- 228 (343)
...+.+++ ++++..+.. ++.+.++|+.+ .+.+..+... .....++++|++..++++..
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t---~~vv~~i~vg--------~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---GQTSGPISNG--------HDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---CCEEECCEEE--------EEECEEEECCSSSCEEEEEET
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC---CeEEEEEECC--------CCcceEEECCCCCEEEEEccC
Confidence 22256787 555554432 24566999988 6666666532 34789999999987888877
Q ss_pred cCCcEEEEEccCCcee
Q 019258 229 SSGTVFAWDLRWQQQS 244 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~ 244 (343)
.++.|.++|+.+.+..
T Consensus 335 ~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTEEEEEESSSCEEE
T ss_pred CCCeEEEEECCCCcEE
Confidence 6999999999985443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.061 Score=44.84 Aligned_cols=207 Identities=9% Similarity=0.090 Sum_probs=115.1
Q ss_pred cCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEE-eCCCcEEEEEccccCCC
Q 019258 116 GPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTG-GFGYGLQWWDLRRAGSG 191 (343)
Q Consensus 116 ~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~-~~d~~i~iwd~~~~~~~ 191 (343)
..+..++++ ++ .++....++.|...|.. ++ +.+.+........-.+++.+.+.++.+ -.++.+.++++.. .+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~--~~ 102 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP--NS 102 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT--TC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC--CC
Confidence 468999998 44 44557778889999988 54 444432222124788888885555444 4578899998866 22
Q ss_pred C--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC--CceeeeeecCCCCcccccCCccccEEE
Q 019258 192 G--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW--QQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 192 ~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
. .+.......... ........++++|.+..++++ .+.....+|.+.. ........... ......+...+.+
T Consensus 103 ~i~~~~~~~~~~~~~-~~N~g~EGLA~d~~~~~L~va-~E~~p~~i~~~~g~~~~~~l~i~~~~---~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 103 EVKILKKIKIPLQES-PTNCGFEGLAYSRQDHTFWFF-KEKNPIEVYKVNGLLSSNELHISKDK---ALQRQFTLDDVSG 177 (255)
T ss_dssp CEEEEEEEECCCSSC-CCSSCCEEEEEETTTTEEEEE-EESSSEEEEEEESTTCSSCCEEEECH---HHHHTCCSSCCCE
T ss_pred eeeeeeeeccccccc-cccCCcceEEEeCCCCEEEEE-ECcCCceEEEEcccccCCceeeecch---hhccccccCCcee
Confidence 2 112222110000 111447899999998766654 4443444444431 11111111000 0000123345789
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc----------cccceeeecCCCCCeeEEccCCceE
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP----------CAINSFDIDPQNPSDVICSLEWESI 337 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~----------~~i~s~~~~~~~~~~l~~~~~~~~i 337 (343)
++++|.... .++...+...|..++...+....+.-. ..--.+++++ +|..-|+ ++...+
T Consensus 178 l~~dp~tg~---------lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~ 246 (255)
T 3qqz_A 178 AEFNQQKNT---------LLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRF 246 (255)
T ss_dssp EEEETTTTE---------EEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTEE
T ss_pred EEEcCCCCe---------EEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCceE
Confidence 999998774 344444445677788765543333221 2347788888 4554444 677899
Q ss_pred EEEeC
Q 019258 338 AIVSR 342 (343)
Q Consensus 338 ~~~~~ 342 (343)
|.|++
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.072 Score=45.55 Aligned_cols=201 Identities=11% Similarity=0.044 Sum_probs=108.7
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.+..+|.......++|.| +++++++-..++ +|..++.... ....+...+.+..+++. +++++++..
T Consensus 24 ~~~~~p~~~~pegia~~~----~g~lyv~d~~~~-----~I~~~d~~g~----~~~~~~~~~~p~gia~~~dG~l~vad~ 90 (306)
T 2p4o_A 24 IITSFPVNTFLENLASAP----DGTIFVTNHEVG-----EIVSITPDGN----QQIHATVEGKVSGLAFTSNGDLVATGW 90 (306)
T ss_dssp EEEEECTTCCEEEEEECT----TSCEEEEETTTT-----EEEEECTTCC----EEEEEECSSEEEEEEECTTSCEEEEEE
T ss_pred EeEeCCCCCCcceEEECC----CCCEEEEeCCCC-----eEEEECCCCc----eEEEEeCCCCceeEEEcCCCcEEEEec
Confidence 556666667888999999 677777654332 3555555331 12223344578899998 666555544
Q ss_pred CCC--cEEEEEccCceeeeeeccCCccccCeEEEE-ecCCE-EEEEeCCCcEEEEECCCCc-eEEEEE------cC-CCc
Q 019258 90 LSG--SLHVLSSAMQVLLSVDENSGFHVGPISGVD-LTGSE-CVSVGEDGRVNLVSVIGGG-EFKRVY------DG-NGL 157 (343)
Q Consensus 90 ~dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~-~~s~s~dg~v~~wd~~~~~-~~~~~~------~~-~~~ 157 (343)
... .|..++..+.+...+.... ....-..+. +.+.. +++-..++.|..+|..++. .+.... .. ...
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLP--DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECT--TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred cCCcceEEEEcCCCCeEEEEEeCC--CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 333 3555554443322222111 111223333 33444 4444468888888876542 111110 00 111
Q ss_pred cceEEEEeCC-C-CEEEEEeCCCcEEEEEccccCCCC--CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 158 VGFNCVKWAS-P-TEFVTGGFGYGLQWWDLRRAGSGG--PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 158 ~~v~~~~~~~-~-~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.....+ ++ + ..+++-...+.|..+|+.. .+. ....+... .....++++++|. ++++....+.|
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~--~g~~~~~~~~~~~--------~~P~gi~vd~dG~-l~va~~~~~~V 235 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDS--TDKPGEPEIFVEQ--------TNIDDFAFDVEGN-LYGATHIYNSV 235 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCT--TSCBCCCEEEEES--------CCCSSEEEBTTCC-EEEECBTTCCE
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC--CCCCCccEEEecc--------CCCCCeEECCCCC-EEEEeCCCCeE
Confidence 124455 44 3 4556666688999999864 111 11112111 2355788899884 66676678899
Q ss_pred EEEEcc
Q 019258 234 FAWDLR 239 (343)
Q Consensus 234 ~iwd~~ 239 (343)
.++|..
T Consensus 236 ~~~~~~ 241 (306)
T 2p4o_A 236 VRIAPD 241 (306)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999864
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.038 Score=47.64 Aligned_cols=183 Identities=10% Similarity=0.037 Sum_probs=103.8
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC------------------ccceEEEEeCC-CCEEEEEeCC
Q 019258 119 SGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG------------------LVGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 119 ~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~l~t~~~d 177 (343)
.++.+. +..+.++..++.|..||..++. ......... ......+++.+ ...|..+...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 456665 5557778888999999987653 332221100 01478889887 6777777666
Q ss_pred CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC-CCCeEEEEEec-----------------CCcEEEEEcc
Q 019258 178 YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP-SRKHTCLAGGS-----------------SGTVFAWDLR 239 (343)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~~~sg~~-----------------dg~v~iwd~~ 239 (343)
+.|..+|... + .+..+....... .....+.+++.| ++. ++++-.. +|.|..||..
T Consensus 101 ~~i~~~d~~~---g-~~~~~~~~~~~~--~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 101 YHLSVVGSEG---G-HATQLATSVDGV--PFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TEEEEECTTC---E-ECEEEESEETTE--ECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCEEEEeCCC---C-EEEEecccCCCC--cccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 6688888654 2 222222111000 003478899999 875 4444322 3678888876
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC---ccccccc-cccc
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE---PFELLAE-PCAI 315 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~---~~~~~~~-~~~i 315 (343)
......... .......|+++|++.. ..++-+..+.|+.++.... ..+.... +. .
T Consensus 174 ~~~~~~~~~------------~~~~p~gia~~~dg~~---------lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P 231 (322)
T 2fp8_A 174 TKETTLLLK------------ELHVPGGAEVSADSSF---------VLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P 231 (322)
T ss_dssp TTEEEEEEE------------EESCCCEEEECTTSSE---------EEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E
T ss_pred CCEEEEecc------------CCccCcceEECCCCCE---------EEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C
Confidence 543221111 1123457899998763 3344466788988876531 1122111 22 5
Q ss_pred ceeeecCCCCCeeEEcc
Q 019258 316 NSFDIDPQNPSDVICSL 332 (343)
Q Consensus 316 ~s~~~~~~~~~~l~~~~ 332 (343)
..+.+++ +|...++..
T Consensus 232 ~gi~~d~-~G~l~va~~ 247 (322)
T 2fp8_A 232 GNIKRNA-DGHFWVSSS 247 (322)
T ss_dssp EEEEECT-TSCEEEEEE
T ss_pred CCeEECC-CCCEEEEec
Confidence 6678887 455555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.079 Score=44.14 Aligned_cols=212 Identities=12% Similarity=0.070 Sum_probs=121.7
Q ss_pred CCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEE-EEEeCCCcEEEEECCCCc
Q 019258 71 PTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSEC-VSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-~s~s~dg~v~~wd~~~~~ 146 (343)
...+..++|. +++.| ++...++.|...|.. ...+...... -....-.+++. +..+ ++.-.++.+.++++....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 3579999998 55544 456677888877776 3333222221 12456777776 4444 554467788888876543
Q ss_pred e--EEEEEc-----CCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc--cCCCCCcccCeEEEEE
Q 019258 147 E--FKRVYD-----GNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN--FGSQGKASGMIHSVDI 216 (343)
Q Consensus 147 ~--~~~~~~-----~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~~ 216 (343)
. ...... .......-.++|.+ .+.|.++.......+|.+..-.....+..+... ...... ....++++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~--~d~S~l~~ 180 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL--DDVSGAEF 180 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS--SCCCEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc--CCceeEEE
Confidence 2 112221 12223578999999 667777777655566655410011122222110 000011 34789999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+|...++++...++..+..+|... + +...+.+..+... ...--..--.|+|.+++. |+..|+-+.+
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~-l~~~~~qpEGia~d~~G~-----------lyIvsE~n~~ 246 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRG-LSHNIKQAEGVAMDASGN-----------IYIVSEPNRF 246 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGG-CSSCCCSEEEEEECTTCC-----------EEEEETTTEE
T ss_pred cCCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCC-cccccCCCCeeEECCCCC-----------EEEEcCCceE
Confidence 998888888888899999999764 3 4444322210000 000012456899999875 5555888888
Q ss_pred EEEec
Q 019258 297 AVVEQ 301 (343)
Q Consensus 297 ~~~~~ 301 (343)
+.++.
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.15 Score=45.23 Aligned_cols=196 Identities=6% Similarity=-0.091 Sum_probs=113.3
Q ss_pred CCCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCce
Q 019258 71 PTRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 71 ~~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
...+.+++|. .++ ++++-...+.|..++........+.... .....-.++++. +..+++-...+.|.+.+++...
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~- 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH- 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-
Confidence 3457889988 444 4555556788888887743322222110 111112344444 5555666677888888887642
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEe-CC-CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FG-YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
...+... .......+++.| ...+..+. .. +.|...++.. .....+.... . ...+.|+++|.+..++
T Consensus 193 ~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG----~~~~~~~~~~----~--~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 193 RKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG----SGRRIIADTH----L--FWPNGLTIDYAGRRMY 261 (386)
T ss_dssp CEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CSCEEEECSS----C--SCEEEEEEEGGGTEEE
T ss_pred eEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC----CCcEEEEECC----C--CCeeeEEEeCCCCEEE
Confidence 2333322 222578899988 55444443 34 6777777644 3333332111 1 4578999998888888
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
++-+..+.|..+|+.. .....+. ......-..|++. .+. .+++-...+.|..++.
T Consensus 262 ~aD~~~~~I~~~d~dG-~~~~~~~----------~~~~~~P~giav~-~~~----------ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 262 WVDAKHHVIERANLDG-SHRKAVI----------SQGLPHPFAITVF-EDS----------LYWTDWHTKSINSANK 316 (386)
T ss_dssp EEETTTTEEEEECTTS-CSCEEEE----------CSSCSSEEEEEEE-TTE----------EEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEeCCC-CeeEEEE----------ECCCCCceEEEEE-CCE----------EEEeeCCCCeEEEEEC
Confidence 8888888999999864 3323333 1112334566663 222 4556666777877763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.031 Score=53.72 Aligned_cols=200 Identities=13% Similarity=0.087 Sum_probs=112.7
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCc-----c-c-cCe-EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGF-----H-V-GPI-SGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~-----h-~-~~v-~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
++.+++++.++.|..+|..+++.+=....... + . ..+ ..+.+.+..++.++.|+.|..+|..+++..-+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 56777788888888888876554422211000 0 0 001 12333477888889999999999999865544432
Q ss_pred CCCccceEEEEeCC---CCEEEEEeC------CCcEEEEEccccCCCCCeeEEecccCCCCC------------------
Q 019258 154 GNGLVGFNCVKWAS---PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGK------------------ 206 (343)
Q Consensus 154 ~~~~~~v~~~~~~~---~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------------ 206 (343)
.... ....+...| .+.++.+.. ++.|..+|.++ ++.+.++.........
T Consensus 146 ~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t---G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 146 TDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT---GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp SCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT---CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred CCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCC---CcEEEEecccCCCCCccccccccccccccCCccc
Confidence 2110 011111122 455665543 58999999998 7877776532100000
Q ss_pred ------cccCeEEEEEcCCCCeEEEEEecCC-------------------cEEEEEccCCceeeeeecCCCCcccccCCc
Q 019258 207 ------ASGMIHSVDIHPSRKHTCLAGGSSG-------------------TVFAWDLRWQQQSIVLSGVGTGEAVTHSLS 261 (343)
Q Consensus 207 ------~~~~i~~v~~~p~~~~~~~sg~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h 261 (343)
.......++++|... ++..++.++ .|..+|.++++....+... .|
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~---------~~ 291 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT---------PG 291 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS---------TT
T ss_pred eeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC---------CC
Confidence 001123467888755 455666665 3999999998877776521 12
Q ss_pred c-------ccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 262 E-------SEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 262 ~-------~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
. .+..-..+..++.. ...++.++.+|.++++|..
T Consensus 292 ~~wd~~~~~~~~~~d~~~~G~~-------~~~v~~~~~~G~l~~lD~~ 332 (668)
T 1kv9_A 292 DSWDFTATQQITLAELNIDGKP-------RKVLMQAPKNGFFYVLDRT 332 (668)
T ss_dssp CCSCCCCCSCEEEEEEEETTEE-------EEEEEECCTTSEEEEEETT
T ss_pred ccccccCCCCcEEEEeccCCcE-------EEEEEEECCCCEEEEEECC
Confidence 1 12211122223220 0147888999999998864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.23 Score=46.38 Aligned_cols=184 Identities=11% Similarity=-0.040 Sum_probs=105.8
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEe-C-C-CCEEEEEe------------------CCCcEEE
Q 019258 125 GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW-A-S-PTEFVTGG------------------FGYGLQW 182 (343)
Q Consensus 125 ~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~-~-~-~~~l~t~~------------------~d~~i~i 182 (343)
|+++ ++...+.+|.+.|+.+.+ +..++.-........+.+ . | ..++++++ .++.+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~-~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCce-EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4444 455567789999999984 555333222225888887 3 6 66777664 3568999
Q ss_pred EEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC--------------C-----------------
Q 019258 183 WDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS--------------G----------------- 231 (343)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d--------------g----------------- 231 (343)
.|..+ .+...++..- +.-..++++|++.+.+++...+ .
T Consensus 180 ID~~t---~~v~~qI~Vg--------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 180 VDADK---WEVAWQVLVS--------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp EETTT---TEEEEEEEES--------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred EECCC---CeEEEEEEeC--------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 99987 5666665532 1234577889988777665333 1
Q ss_pred ------cEEEEEccC--CceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 232 ------TVFAWDLRW--QQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 232 ------~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.|.+.|.++ ........ . -....-++.++|++.. .+++.-.+.+|.+++...
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~I----------p-vg~~PhGv~~sPDGk~---------v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYI----------P-IANNPHGCNMAPDKKH---------LCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEE----------E-EESSCCCEEECTTSSE---------EEEECTTSSBEEEEEGGG
T ss_pred CeeEECcEEEEeCcccCCceeEEEE----------e-cCCCceEEEEcCCCCE---------EEEeCCCCCeEEEEECcc
Confidence 355555554 11101111 0 1123357899999985 566667888999998763
Q ss_pred Cc----------cccccc---ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 304 EP----------FELLAE---PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 304 ~~----------~~~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ..+..+ ..--.-++++| +|..-++-.-+..|.+|+
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEE
T ss_pred cccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEE
Confidence 21 011111 23456677887 442222222344666665
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.18 Score=43.60 Aligned_cols=277 Identities=8% Similarity=-0.003 Sum_probs=138.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCC-CCCCCCCcc-C-CCCCCeeEEEccCCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQ-W-TPPTRISSLSTSHQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~-~~~~~~~~~-~-~~~~~v~~v~~~~~~~l~~~s~dg 92 (343)
+....+.+|.+.+ .+..++.|. ++. ++...+ ...++.... . .....+.+|.|.+ +.+++++..|
T Consensus 33 ~~~~~~~~v~~~~----~~~~~~~G~-~g~-------i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g 99 (327)
T 2xbg_A 33 PTTATILDMSFID----RHHGWLVGV-NAT-------LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPP 99 (327)
T ss_dssp SCSSCEEEEEESS----SSCEEEEET-TTE-------EEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETT
T ss_pred CCCCcEEEEEECC----CCcEEEEcC-CCe-------EEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCC
Confidence 4456788888876 456666543 321 333322 122222211 1 1234688888874 4444455566
Q ss_pred cEEEEEccC-ceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCE
Q 019258 93 SLHVLSSAM-QVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTE 170 (343)
Q Consensus 93 ~v~v~~~~~-~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (343)
.| |...+ ++.-........+.+.+..+.+. ...++.++.+|.|.. ..+.++.-......... .+..+.+.+...
T Consensus 100 ~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~-~~~~~~~~~~~~ 175 (327)
T 2xbg_A 100 IM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIG-VMRNLNRSPSGE 175 (327)
T ss_dssp EE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCC-CEEEEEECTTSC
T ss_pred eE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCc-ceEEEEEcCCCc
Confidence 43 44332 22222221111123456677765 555555666665432 22233323333333333 688899988555
Q ss_pred EEEEeCCCcEEE-EEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 171 FVTGGFGYGLQW-WDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 171 l~t~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
++..+.++.+.. +|- . +.....+.... . ..+..+.+.|++. ++ .++.+|.+++.+...+ .......
T Consensus 176 ~~~~g~~G~~~~S~d~-g---G~tW~~~~~~~--~----~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G-~tW~~~~ 242 (327)
T 2xbg_A 176 YVAVSSRGSFYSTWEP-G---QTAWEPHNRTT--S----RRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNS-ENWGELL 242 (327)
T ss_dssp EEEEETTSSEEEEECT-T---CSSCEEEECCS--S----SCEEEEEECTTSC-EE-EEETTTEEEEEETTEE-EEECCCB
T ss_pred EEEEECCCcEEEEeCC-C---CCceeECCCCC--C----CccceeEECCCCC-EE-EEeCCceEEEecCCCC-CeeEecc
Confidence 555666665544 332 0 23333332111 1 4588899988775 43 4567788877642111 1111110
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccc----cccccceeeecCCCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLA----EPCAINSFDIDPQNP 325 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~----~~~~i~s~~~~~~~~ 325 (343)
.. ...+...+..+.+.+++ .++.++.+|.|+.-......-+... .+..++++.+.+ +
T Consensus 243 ~~------~~~~~~~~~~v~~~~~~-----------~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~- 303 (327)
T 2xbg_A 243 SP------LRRNSVGFLDLAYRTPN-----------EVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P- 303 (327)
T ss_dssp CT------TSSCCSCEEEEEESSSS-----------CEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-
T ss_pred CC------cccCCcceEEEEecCCC-----------EEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-
Confidence 00 00122458889888753 4666677888754322222222122 135678888864 2
Q ss_pred CeeEEccCCceEEEEe
Q 019258 326 SDVICSLEWESIAIVS 341 (343)
Q Consensus 326 ~~l~~~~~~~~i~~~~ 341 (343)
..+++++.++.|+-++
T Consensus 304 ~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 304 DQGFILGQKGILLRYV 319 (327)
T ss_dssp TEEEEECSTTEEEEEC
T ss_pred CceEEEcCCceEEEEc
Confidence 4566666788887665
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.048 Score=52.24 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCC-----------cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCc
Q 019258 81 HQSLVAASTLSG-----------SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGG 146 (343)
Q Consensus 81 ~~~~l~~~s~dg-----------~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~ 146 (343)
++.+++.|+.+. .+.+||....+-..+......+...+.++.+. +..++.|+ .+..+.+||..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 566777776432 57788876443221111111122333344433 77888887 45689999998763
Q ss_pred eEEEEEcCCCccceEEEEeCC-CCEEEEEe-CC-----CcEEEEEccc
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FG-----YGLQWWDLRR 187 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d-----~~i~iwd~~~ 187 (343)
-...-..+..-.-.++...+ +..++.|+ .+ ..+.+||..+
T Consensus 277 -W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 277 -WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp -EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred -eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 33222211111223444454 77788888 34 5789999866
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.82 E-value=0.21 Score=43.10 Aligned_cols=194 Identities=6% Similarity=-0.092 Sum_probs=111.2
Q ss_pred CCeeEEEcc--CCCeEEEEcCCCcEEEEEccCcee--eeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 019258 72 TRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVL--LSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGG 146 (343)
Q Consensus 72 ~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~ 146 (343)
..+.++.|. ++.++.+-...+.|..++...... ...... .....-.+++|. +..+++-...+.|.+.+++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~--l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG--LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC--CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 346688887 445556666778888888764321 111111 111112344444 5555666677889999987642
Q ss_pred eEEEEEcCCCccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 147 EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
...+.... ......+++.| ...+..+.. .+.|...++.. .....+.... . ..-+.++++|++..+
T Consensus 113 -~~~l~~~~-~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG----~~~~~~~~~~----l--~~Pnglavd~~~~~l 180 (318)
T 3sov_A 113 -RKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG----SSRFIIINSE----I--YWPNGLTLDYEEQKL 180 (318)
T ss_dssp -CEEEECSS-CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS----CSCEEEECSS----C--SCEEEEEEETTTTEE
T ss_pred -EEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC----CCeEEEEECC----C--CCccEEEEeccCCEE
Confidence 33333222 22578899988 555554442 57777777643 3223332111 1 457899999988888
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+.+-+..+.|..+|+.. .....+. ......-..|++.. .. .+++-...+.|..++.
T Consensus 181 Y~aD~~~~~I~~~d~dG-~~~~~~~----------~~~~~~P~glav~~--~~---------lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDG-TNRQAVV----------KGSLPHPFALTLFE--DI---------LYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEETTTTEEEEEETTS-CSCEEEE----------CSCCSCEEEEEEET--TE---------EEEEETTTTEEEEEET
T ss_pred EEEECCCCEEEEEcCCC-CceEEEe----------cCCCCCceEEEEeC--CE---------EEEEecCCCeEEEEEC
Confidence 88888889999999864 2222332 11122334566642 22 4555556667777665
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.2 Score=42.46 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=94.0
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCC-----cEEEEEccCceeeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSG-----SLHVLSSAMQVLLSV 107 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg-----~v~v~~~~~~~~~~~ 107 (343)
++.+++.|+.++....-.++.+|..... +..+..++.+-.-.++...++.+++.|+.++ .+.+||....+-..+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 4567777876654332346677775432 2222223322222223333567777776543 466777764432222
Q ss_pred eccCCccccCeEEEEecCCEEEEEeCC-------CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC---
Q 019258 108 DENSGFHVGPISGVDLTGSECVSVGED-------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG--- 177 (343)
Q Consensus 108 ~~~~~~h~~~v~~~~~~~~~~~s~s~d-------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d--- 177 (343)
.... ........+.+.+..++.|+.+ ..+..||+.+.+ -...-.......-.++....+..++.|+.+
T Consensus 140 ~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 140 APMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL 217 (302)
T ss_dssp CCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred CCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence 2111 1111122333346666666542 357889988763 333211111101122222345667777664
Q ss_pred --CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-----cEEEEEccCC
Q 019258 178 --YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-----TVFAWDLRWQ 241 (343)
Q Consensus 178 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-----~v~iwd~~~~ 241 (343)
..+.+||+.+ .....+......+ .....+.+ +..+++.|+.++ .+.+||+.+.
T Consensus 218 ~~~~~~~yd~~~----~~W~~~~~~~~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 218 VRKSVEVYDPTT----NAWRQVADMNMCR----RNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BCCCEEEEETTT----TEEEEECCCSSCC----BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccceEEEEeCCC----CCEeeCCCCCCcc----ccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 4688899866 3333333221111 11222222 235777787654 4888888763
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.27 Score=47.88 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=85.6
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCCccCCCCCCeeEEEcc-CCCeEEEEcC---CCcEE
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPHSQWTPPTRISSLSTS-HQSLVAASTL---SGSLH 95 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~~~~~~~~~v~~v~~~-~~~~l~~~s~---dg~v~ 95 (343)
...++|+| +++.|+-.+.|.......|+.+++.+.... .++...........+.|+ +++.|+..+. ...|.
T Consensus 223 ~~~~~Wsp----Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~ 298 (751)
T 2xe4_A 223 NGEIVWGP----DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVH 298 (751)
T ss_dssp CSCCEECS----STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred eeeEEEec----CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEE
Confidence 45789999 787777777764322125778888543211 122222333445678888 7777665553 34567
Q ss_pred EEEccCce-ee--eeeccCCccccCeEEEEec-CCEEEEEeCC-----CcEEEEECCCCceEEE-EEcCCCccceEEEEe
Q 019258 96 VLSSAMQV-LL--SVDENSGFHVGPISGVDLT-GSECVSVGED-----GRVNLVSVIGGGEFKR-VYDGNGLVGFNCVKW 165 (343)
Q Consensus 96 v~~~~~~~-~~--~~~~~~~~h~~~v~~~~~~-~~~~~s~s~d-----g~v~~wd~~~~~~~~~-~~~~~~~~~v~~~~~ 165 (343)
++++.... .. .... ....+...++.|. ++.|+..+.. ..|..+|+.++..... ++.......+..+.+
T Consensus 299 ~~d~~~~~~~~~~~~l~--~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~ 376 (751)
T 2xe4_A 299 LLDLRKGNAHNTLEIVR--PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV 376 (751)
T ss_dssp EEESSSCTTCCCEEESS--CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred EEECCCCCCCceeEEee--cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence 77776431 11 1111 1234566777765 7766555433 2566667664212233 333332224566666
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 019258 166 ASPTEFVTGGFGYGLQWW 183 (343)
Q Consensus 166 ~~~~~l~t~~~d~~i~iw 183 (343)
.....+++...++..++|
T Consensus 377 ~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 377 RSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CSSEEEEEEEETTEEEEE
T ss_pred ECCEEEEEEEeCCEEEEE
Confidence 656566677777765554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0092 Score=57.71 Aligned_cols=215 Identities=8% Similarity=-0.036 Sum_probs=114.9
Q ss_pred CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCC---ceEEEEEcCCCccceEEEE
Q 019258 91 SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGG---GEFKRVYDGNGLVGFNCVK 164 (343)
Q Consensus 91 dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~---~~~~~~~~~~~~~~v~~~~ 164 (343)
...|+..++...+...+.. ....+.+++|. +..|+ +-...+.|..+++... .....+... .......++
T Consensus 385 ~~~I~~id~~~~~~~~~~~----~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECCSC----CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEE
T ss_pred ccceEEEeCCCCcceeeec----cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEE
Confidence 3466666665433222221 11234567776 44444 4445678888888751 111122111 111345667
Q ss_pred eCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-CcEEEEEccCC
Q 019258 165 WAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-GTVFAWDLRWQ 241 (343)
Q Consensus 165 ~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-g~v~iwd~~~~ 241 (343)
+.+ ++++++-...+.|.+.++.. .....+..... .....|+++|.+..++++-... +.|..+++...
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg----~~~~~l~~~~~------~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKG----VKRKTLFREQG------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSS----CCEEEECCCSS------CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCC----CceEEEEeCCC------CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 764 45555555678899998754 33333322111 3357889999776776665433 78888877532
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccc---cccce
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEP---CAINS 317 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~---~~i~s 317 (343)
....+. ...-..-..|+|+|++.. ..++-+..+.|+.++.... ...+.... ....+
T Consensus 530 -~~~~l~----------~~~l~~PnGlavd~~~~~---------LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g 589 (699)
T 1n7d_A 530 -DIYSLV----------TENIQWPNGITLDLLSGR---------LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 589 (699)
T ss_dssp -CCCEES----------CSSCSSCCCEEECTTTCC---------EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred -CeeEEE----------eCCCCCccEEEEeccCCE---------EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence 221221 111233567999988774 4555567778999887533 22332221 22456
Q ss_pred eeecCCCCCeeEEccCCceEEEEeC
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+++..+ ..+++-...+.|..+++
T Consensus 590 lavd~~--~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 590 LAVFED--KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CEEETT--EEEEECSTTTCEEEEET
T ss_pred eEEECC--EEEEEeCCCCeEEEEEc
Confidence 666652 44444455567877754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.51 Score=44.88 Aligned_cols=221 Identities=7% Similarity=-0.089 Sum_probs=127.2
Q ss_pred eEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccce
Q 019258 84 LVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGF 160 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v 160 (343)
+|+.+ ....|+..++........... .......+++|+ +..+++-..++.|..++++... ...+....-. ..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~-~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL--TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLD-YP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCS-CC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc--CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCC-Cc
Confidence 34433 566788888874322221211 123456788887 4445566678889999987652 3444332211 46
Q ss_pred EEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE-ecCCcEEEEE
Q 019258 161 NCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG-GSSGTVFAWD 237 (343)
Q Consensus 161 ~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg-~~dg~v~iwd 237 (343)
..+++.+ ++.+++-...+.|.+.++.. .....+.... . .....|+++|....++.+- +..+.|...+
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG----~~~~~l~~~~----l--~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDG----QHRQVLVWKD----L--DSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTS----TTCEEEECSS----C--CCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCC----CcEEEEEeCC----C--CCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 6777765 55566666688899998855 2222332111 1 4478999999766777765 2367888888
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcccccccc-cccc
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAEP-CAIN 316 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~~-~~i~ 316 (343)
+... ....+. . .-..-..|++++++.. ..++=+..+.|...+......+++... ....
T Consensus 153 ~dG~-~~~~l~----------~-~~~~P~GlalD~~~~~---------LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~ 211 (628)
T 4a0p_A 153 MDGS-ERTTLV----------P-NVGRANGLTIDYAKRR---------LYWTDLDTNLIESSNMLGLNREVIADDLPHPF 211 (628)
T ss_dssp TTSC-SCEEEE----------C-SCSSEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEEECCSCEE
T ss_pred CCCC-ceEEEE----------C-CCCCcceEEEccccCE---------EEEEECCCCEEEEEcCCCCceEEeeccCCCce
Confidence 7643 222322 1 1245678999987663 444556677888888754333433332 2234
Q ss_pred eeeecCCCCCeeEEccCCceEEEEeC
Q 019258 317 SFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 317 s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
++++.. + ...++-...+.|+.+++
T Consensus 212 glav~~-~-~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 212 GLTQYQ-D-YIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEEEET-T-EEEEEETTTTEEEEEET
T ss_pred EEEEEC-C-EEEEecCCCCEEEEEEC
Confidence 666665 1 33333334567776654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.39 Score=43.32 Aligned_cols=152 Identities=9% Similarity=0.067 Sum_probs=84.4
Q ss_pred eeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CC----cEEEEECCC
Q 019258 74 ISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DG----RVNLVSVIG 144 (343)
Q Consensus 74 v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg----~v~~wd~~~ 144 (343)
...|++. ++..|+++...+.|+.++........+.. .......++++ ++.++.+.. ++ .+...+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 4556665 23455555444777777776433222221 22346788887 664544443 22 233344332
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCE-EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTE-FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
.......+.... ....++++| ... +++-..++.|..+|... .. ...+..... . ..-..++++|++..
T Consensus 215 ~~~~~~~l~~~~--~p~giavdp~~g~lyv~d~~~~~V~~~~~~~---~~-~~~~~~~~~-~----~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 215 GFKVITELTKGQ--NCNGAETHPINGELYFNSWNAGQVFRYDFTT---QE-TTPLFTIQD-S----GWEFHIQFHPSGNY 283 (430)
T ss_dssp TSCSEEEEEECS--SCCCEEECTTTCCEEEEETTTTEEEEEETTT---TE-EEEEEECSS-S----SCCEEEEECTTSSE
T ss_pred ceeeeeeeccCC--CceEEEEeCCCCEEEEEECCCCEEEEEECCC---Cc-EEEEEEcCC-C----CcceeEEEcCCCCE
Confidence 211111111111 356778888 444 44444578899999865 22 212221110 1 34678999999987
Q ss_pred EEEEEecCCcEEEEEccC
Q 019258 223 TCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~ 240 (343)
++++-..++.|..+|...
T Consensus 284 lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 888878889999988753
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.55 E-value=0.85 Score=46.65 Aligned_cols=183 Identities=10% Similarity=0.005 Sum_probs=95.1
Q ss_pred cccceeeEEecCCC--CCCCCeEEEEee-cCCCCCCceeeeeCCCCCCCCCCc--cCCCCCCeeEEEcc---CCCeEEEE
Q 019258 17 QSKYIDAVRWLPPL--SPLSKLAVLAIY-DTDADSPSLETHSISLPASLTPHS--QWTPPTRISSLSTS---HQSLVAAS 88 (343)
Q Consensus 17 ~~~~i~~v~w~p~~--~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~~~~~--~~~~~~~v~~v~~~---~~~~l~~~ 88 (343)
-+..|++++..|.. ....++++.|.| |++ +++++++. .+.+. .++.+....++... ...+|..|
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~t-----v~I~sL~~---l~~~~~~~L~~~~~p~si~l~~~~~~~~L~ig 623 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDIS-----ARILKLPS---FELLHKEMLGGEIIPRSILMTTFESSHYLLCA 623 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTE-----EEEEETTT---CCEEEEEECCSSCCEEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCE-----EEEEECCC---CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEE
Confidence 35679999998742 234689999998 654 77999964 22222 22222345555554 44678899
Q ss_pred cCCCcEEEEEccCc-eeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceE-EEE
Q 019258 89 TLSGSLHVLSSAMQ-VLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN-CVK 164 (343)
Q Consensus 89 s~dg~v~v~~~~~~-~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~-~~~ 164 (343)
-.||.+.-+.+... ..+.-.+.......++.=..+. +..-+-+..+....++.-... ....-.. .. .+. ...
T Consensus 624 l~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~-~~--~v~~~~~ 699 (1158)
T 3ei3_A 624 LGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVN-LK--EVNYMCP 699 (1158)
T ss_dssp ETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBS-SS--CCCEEEE
T ss_pred eCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccC-hH--HhceEec
Confidence 99999877776521 1111111101123344433333 444444444555555544322 1211111 11 232 334
Q ss_pred eCC---CCEEEEEeCCCcEEEEEccccCCCCCe--eEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 165 WAS---PTEFVTGGFGYGLQWWDLRRAGSGGPV--LQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 165 ~~~---~~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
|+. ++-++.. .++.++|.-+.. .+.+ .++... ..+..++++|....+
T Consensus 700 F~se~~~~g~v~~-~~~~LrI~~i~~---~~~~~~~~ipL~--------~Tprri~y~~~~~~~ 751 (1158)
T 3ei3_A 700 LNSDGYPDSLALA-NNSTLTIGTIDE---IQKLHIRTVPLY--------ESPRKICYQEVSQCF 751 (1158)
T ss_dssp ECCSSSTTEEEEE-CSSCEEEEEECC---SSSEEEEEEECS--------SEEEEEEEEGGGTEE
T ss_pred cCcccCCCcEEEE-cCCceEEEEecc---cCCeeEEEEeCC--------CCceEEEEcCCCCEE
Confidence 544 3456544 456699988754 2222 223221 447888888875543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.2 Score=45.28 Aligned_cols=152 Identities=11% Similarity=0.145 Sum_probs=88.8
Q ss_pred EEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CC----cEEEEEccccC
Q 019258 119 SGVDLT---GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GY----GLQWWDLRRAG 189 (343)
Q Consensus 119 ~~~~~~---~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~----~i~iwd~~~~~ 189 (343)
..++++ +..|..+...+.|..+|+..+ .+..+..... ....+++++ ++.+..+.. ++ .+...+...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v~~~~~~~~--~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-- 214 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YVSTVYSGLS--KVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-- 214 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTT-EEEEEECCCS--CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCC-EEEEEecCCC--CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence 455554 244555544478889998876 3554443222 588999999 664555544 22 233344322
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.......+... .....++++|+...++++-..++.|..+|........... ......-..|+
T Consensus 215 ~~~~~~~l~~~--------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~----------~~~~~~P~gia 276 (430)
T 3tc9_A 215 GFKVITELTKG--------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT----------IQDSGWEFHIQ 276 (430)
T ss_dssp TSCSEEEEEEC--------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE----------CSSSSCCEEEE
T ss_pred ceeeeeeeccC--------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE----------cCCCCcceeEE
Confidence 11111222211 3367888999545677777788999999987643311111 11123456899
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
|+|++.. ..++-...++|+.++..
T Consensus 277 ~~pdG~~---------lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 277 FHPSGNY---------AYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ECTTSSE---------EEEEETTTTEEEEEEEE
T ss_pred EcCCCCE---------EEEEECCCCEEEEEeCC
Confidence 9999873 34455667788887754
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.49 Score=42.69 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=83.2
Q ss_pred eeEEEccC---CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC---Cc-EEEEECCC
Q 019258 74 ISSLSTSH---QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED---GR-VNLVSVIG 144 (343)
Q Consensus 74 v~~v~~~~---~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d---g~-v~~wd~~~ 144 (343)
...|++.. ...|+.+...+.|+.++........+.. ......+++++ ++.+++-... .. +...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 45777762 3556665544788888875443322221 22346788887 6644443321 11 22333222
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEE-EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFV-TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
............ ....+++++ ...|. +-..++.|+.+|... +.....+..... . ..-..++++|++..
T Consensus 217 ~~~~~~~~~~~~--~P~giavd~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~~-~----~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 217 GFTERLSLCNAR--GAKTCAVHPQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVMMDT-K----GSNFHIVWHPTGDW 286 (433)
T ss_dssp TTCCEEEEEECS--SBCCCEECTTTCCEEECBTTCSEEEEECTTT---CCEEEEEEECSC-C----SSCEEEEECTTSSE
T ss_pred CeeccccccccC--CCCEEEEeCCCCeEEEEECCCCEEEEEECCC---CeEEEEEeccCC-C----CCcccEEEeCCCCE
Confidence 211011111111 356677787 44444 444578899998865 333233322111 1 23457999999987
Q ss_pred EEEEEecCCcEEEEEcc
Q 019258 223 TCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~ 239 (343)
++++-...+.|..+|+.
T Consensus 287 LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEETTTTEEEEEEBC
T ss_pred EEEEeCCCCEEEEEeCC
Confidence 88887888999998865
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.65 Score=43.86 Aligned_cols=158 Identities=12% Similarity=0.059 Sum_probs=87.9
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccc--cCeE-EEEecCCEEEEEe------CCCcEEEEECCCCceEEEEEcCC
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHV--GPIS-GVDLTGSECVSVG------EDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~--~~v~-~~~~~~~~~~s~s------~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
+++++.|+.+..+|..+++.+-..... .+. ..+. ...+.+..++.++ .+|.|..+|..+++..-+.....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 888889999999998766544222111 110 0111 1111244555544 48999999999986544443221
Q ss_pred Ccc-----------------------------------ce-EEEEeCC-CCEEEEEeCC----------------CcEEE
Q 019258 156 GLV-----------------------------------GF-NCVKWAS-PTEFVTGGFG----------------YGLQW 182 (343)
Q Consensus 156 ~~~-----------------------------------~v-~~~~~~~-~~~l~t~~~d----------------~~i~i 182 (343)
... .+ ...++.+ .+.+..+..+ +.|.-
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 110 00 1234445 5566666554 37888
Q ss_pred EEccccCCCCCeeEEecccCCC---CCcccCeEEEEEc-CCCC--eEEEEEecCCcEEEEEccCCceeeee
Q 019258 183 WDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIH-PSRK--HTCLAGGSSGTVFAWDLRWQQQSIVL 247 (343)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~-p~~~--~~~~sg~~dg~v~iwd~~~~~~~~~~ 247 (343)
+|.++ ++....+....... .....++. ++.. .++. .+++.++.+|.++++|.++++.....
T Consensus 283 ld~~T---G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 283 RDADT---GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EETTT---CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EeCCC---CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 99988 77776665432100 00001222 2322 3442 46677899999999999887665444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.84 Score=44.61 Aligned_cols=158 Identities=7% Similarity=-0.057 Sum_probs=94.6
Q ss_pred CCCCeeEEEcc--CCCeEEEEcCCCcEEEEEccCc----eeeeeeccCCccccCeEEEEecC-CEEEEEeCCCcEEEEEC
Q 019258 70 PPTRISSLSTS--HQSLVAASTLSGSLHVLSSAMQ----VLLSVDENSGFHVGPISGVDLTG-SECVSVGEDGRVNLVSV 142 (343)
Q Consensus 70 ~~~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~dg~v~~wd~ 142 (343)
....+.+|+|. ++.++++-...+.|+.+++... ....+... ......-.+++|.+ ..+++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence 34567788887 4445556666788888887632 11122211 11212223444444 56666677889999998
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-C-CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-G-YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
+... ...+.. ........|++.| ...|..+.. . +.|...++.. .....+.... . .....|++++.
T Consensus 501 dG~~-~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG----~~~~~lv~~~----l--~~P~GLavD~~ 568 (791)
T 3m0c_C 501 KGVK-RKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----VDIYSLVTEN----I--QWPNGITLDLL 568 (791)
T ss_dssp TSSS-EEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CCEEEEECSS----C--SCEEEEEEETT
T ss_pred CCCe-EEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC----CceEEEEeCC----C--CCceEEEEecC
Confidence 8653 333332 2222588999988 455554443 3 6777777743 3333333211 1 45889999988
Q ss_pred CCeEEEEEecCCcEEEEEccC
Q 019258 220 RKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~ 240 (343)
...|+++-...+.|...|+..
T Consensus 569 ~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 569 SGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEeCCCCcEEEEecCC
Confidence 778888877788899999864
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.63 Score=43.68 Aligned_cols=114 Identities=10% Similarity=-0.016 Sum_probs=66.5
Q ss_pred CCeEEEEcC-CCcEEEEEc-cCceeeeeeccCCc---cc-----cCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 019258 82 QSLVAASTL-SGSLHVLSS-AMQVLLSVDENSGF---HV-----GPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 82 ~~~l~~~s~-dg~v~v~~~-~~~~~~~~~~~~~~---h~-----~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
++.+++++. ++.|..+|. .+++.+=....... +. .....+.+.+..++.++.|+.|..+|..+++..-+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 566777777 788888888 65554321111100 00 001123344778888899999999999998644443
Q ss_pred EcCCCccceEEEEeCC---CCEEEEEeC------CCcEEEEEccccCCCCCeeEEec
Q 019258 152 YDGNGLVGFNCVKWAS---PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~---~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
...... .-..+...| .+.++.++. ++.|..+|.++ ++.+.++..
T Consensus 142 ~~~~~~-~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~t---G~~~W~~~~ 194 (571)
T 2ad6_A 142 EVCDPK-VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKT---GELKWRAFA 194 (571)
T ss_dssp ECCCGG-GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTT---CCEEEEEES
T ss_pred cCCCCC-ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCC---CcEEEEEcc
Confidence 221100 000111112 456666665 79999999998 777766553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.45 Score=40.19 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=94.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCC--CCCCCccCCCCCCeeEEEccCCCeEEEEcCC-----CcEEEEEccCceee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPA--SLTPHSQWTPPTRISSLSTSHQSLVAASTLS-----GSLHVLSSAMQVLL 105 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-----g~v~v~~~~~~~~~ 105 (343)
++.+++.|+.++....-.++.++..... .+..+..++.+-.-.++...++.+++.|+.+ ..+.+||....+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 4567777877643222346777775533 0222333333222223333356666666643 35778887644322
Q ss_pred eeeccCCccccCeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC---
Q 019258 106 SVDENSGFHVGPISGVDLTGSECVSVGED-----GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG--- 177 (343)
Q Consensus 106 ~~~~~~~~h~~~v~~~~~~~~~~~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d--- 177 (343)
.+.... ........+...+..++.|+.+ ..+..+|+.+.+ -..+........-.++....+..++.|+.+
T Consensus 142 ~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 142 MLGDMQ-TAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA 219 (301)
T ss_dssp EEEECS-SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred ECCCCC-CCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEECCEEEEEeCCCCCc
Confidence 222211 1111122333346666777654 458889988763 333321111101112222235566777664
Q ss_pred --CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-----cEEEEEccC
Q 019258 178 --YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-----TVFAWDLRW 240 (343)
Q Consensus 178 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-----~v~iwd~~~ 240 (343)
..+.+||+.+ .....+......+ ....++.+ + ..+++.|+.++ .|.+||+++
T Consensus 220 ~~~~v~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 220 HLSSVEAYNIRT----DSWTTVTSMTTPR----CYVGATVL--R-GRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp BCCCEEEEETTT----TEEEEECCCSSCC----BSCEEEEE--T-TEEEEECCBCSSSBEEEEEEEETTT
T ss_pred ccceEEEEeCCC----CcEEECCCCCCcc----cceeEEEE--C-CEEEEEcCcCCCcccccEEEEcCCC
Confidence 5688999876 3333332211111 11223333 2 35777777653 577888765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.78 Score=41.38 Aligned_cols=153 Identities=8% Similarity=0.012 Sum_probs=87.0
Q ss_pred eEEEEecC----CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCC-----cEEEEEccc
Q 019258 118 ISGVDLTG----SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGY-----GLQWWDLRR 187 (343)
Q Consensus 118 v~~~~~~~----~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~-----~i~iwd~~~ 187 (343)
-..+.+.. ..|..+...+.|+.+|..++ .+..+..... ....+++.+ ++ |..+...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v~~~~~~~~--~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YVDIKTTNIG--QCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTT-EEEEECCCCS--CEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCC-EEEEeecCCC--CccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 35667762 55655554488999998777 3555443222 588999999 55 44444321 233333322
Q ss_pred cCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 188 AGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.......+.. . .....++++|....++++-..++.|+.+|...+.....+... .....-..
T Consensus 217 --~~~~~~~~~~-~-------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---------~~~~~~~~ 277 (433)
T 4hw6_A 217 --GFTERLSLCN-A-------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---------DTKGSNFH 277 (433)
T ss_dssp --TTCCEEEEEE-C-------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---------SCCSSCEE
T ss_pred --Ceeccccccc-c-------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---------CCCCCccc
Confidence 1111111211 1 335678899944467667667889999998754431222211 11122346
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
|+|+|++.. ..++-...++|+.++..
T Consensus 278 ia~dpdG~~---------LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 278 IVWHPTGDW---------AYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEECTTSSE---------EEEEETTTTEEEEEEBC
T ss_pred EEEeCCCCE---------EEEEeCCCCEEEEEeCC
Confidence 999999873 34455667789887754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.068 Score=51.62 Aligned_cols=154 Identities=7% Similarity=-0.043 Sum_probs=87.9
Q ss_pred CCeeEEEcc-CCCeEEEE-cCCCcEEEEEccC----ceeeeeeccCCccccCeEEEEe--c-CCEEEEEeCCCcEEEEEC
Q 019258 72 TRISSLSTS-HQSLVAAS-TLSGSLHVLSSAM----QVLLSVDENSGFHVGPISGVDL--T-GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~-s~dg~v~v~~~~~----~~~~~~~~~~~~h~~~v~~~~~--~-~~~~~s~s~dg~v~~wd~ 142 (343)
..+.+|+|. ....|+.+ ...+.|+.+++.. .....+.. ........+++ . +..+++-...+.|.+.++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---SCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---CCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 456677887 44555544 4567888888763 11111111 01112234444 3 555566567788999998
Q ss_pred CCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-C-CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC
Q 019258 143 IGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-G-YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS 219 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 219 (343)
.... ...+.. ........+++.| ...|..+.. . +.|...++.. .....+.... . ...+.|+++|.
T Consensus 483 dg~~-~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG----~~~~~l~~~~----l--~~PnGlavd~~ 550 (699)
T 1n7d_A 483 KGVK-RKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----VDIYSLVTEN----I--QWPNGITLDLL 550 (699)
T ss_dssp SSCC-EEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----CCCCEESCSS----C--SSCCCEEECTT
T ss_pred CCCc-eEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----CCeeEEEeCC----C--CCccEEEEecc
Confidence 7652 333332 2212467788887 444433332 2 6777776643 2222221111 1 44678999998
Q ss_pred CCeEEEEEecCCcEEEEEccC
Q 019258 220 RKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 220 ~~~~~~sg~~dg~v~iwd~~~ 240 (343)
+..++++-+..+.|..+|+..
T Consensus 551 ~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp TCCEEEEETTTTEEEEECSSS
T ss_pred CCEEEEEecCCCeEEEEccCC
Confidence 878888888888999999864
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.85 Score=43.03 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=64.6
Q ss_pred CCeEEEEcC-CCcEEEEEc-cCceeeeeeccCCc-cc-------cCeEEEEe--cCCE----EEEEeCCCcEEEEECCCC
Q 019258 82 QSLVAASTL-SGSLHVLSS-AMQVLLSVDENSGF-HV-------GPISGVDL--TGSE----CVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 82 ~~~l~~~s~-dg~v~v~~~-~~~~~~~~~~~~~~-h~-------~~v~~~~~--~~~~----~~s~s~dg~v~~wd~~~~ 145 (343)
++.+++++. ++.|..+|. .+++.+=....... .. .....+.+ .+.. ++.++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 566777777 788888888 65544311111000 00 00122344 4444 788889999999999998
Q ss_pred ceEEEEEcCCCccceEEEEeCC---CCEEEEEeC------CCcEEEEEccccCCCCCeeEEec
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS---PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~---~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
+..-+....... .-..+...| ...++.++. ++.|+-+|.++ ++.+.++..
T Consensus 142 ~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~T---G~~~W~~~~ 200 (599)
T 1w6s_A 142 ETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT---GEQVWRAYA 200 (599)
T ss_dssp CEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT---CCEEEEEES
T ss_pred CEEEeecCCCCC-ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCC---CcEEEEEcC
Confidence 654443221100 000111112 456666653 89999999998 777766653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=1.3 Score=41.53 Aligned_cols=161 Identities=13% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCC------ccccCeEEEE-ecCC-EEEEEe------CCCcEEEEECCCCce
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSG------FHVGPISGVD-LTGS-ECVSVG------EDGRVNLVSVIGGGE 147 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~------~h~~~v~~~~-~~~~-~~~s~s------~dg~v~~wd~~~~~~ 147 (343)
++.+++++.|+.+..+|..+++.+-...... ....++..=. ..++ .++.++ .+|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 6778888899999999987665542221110 0112221100 0012 455544 378999999998864
Q ss_pred EEEEEcCCCc----------------------------------------cceEEEEeCC-CCEEEEEeC----------
Q 019258 148 FKRVYDGNGL----------------------------------------VGFNCVKWAS-PTEFVTGGF---------- 176 (343)
Q Consensus 148 ~~~~~~~~~~----------------------------------------~~v~~~~~~~-~~~l~t~~~---------- 176 (343)
.-... .... ..-...++.+ .+.+..+..
T Consensus 197 ~W~~~-~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRP-FVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEE-SSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EeecC-CCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 43322 1100 0001234455 455555542
Q ss_pred ----------C----CcEEEEEccccCCCCCeeEEecccCCC---CCcccCeEEEEEc-CCCC--eEEEEEecCCcEEEE
Q 019258 177 ----------G----YGLQWWDLRRAGSGGPVLQFKGNFGSQ---GKASGMIHSVDIH-PSRK--HTCLAGGSSGTVFAW 236 (343)
Q Consensus 177 ----------d----~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~v~~~-p~~~--~~~~sg~~dg~v~iw 236 (343)
| +.|.-+|.++ ++....+....... .....++. +... .++. .+++.++.+|.++++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~T---G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~l 351 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSS---GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVV 351 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTT---CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEE
T ss_pred ccCCCcccccCCcccceEEEEeCCC---CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEE
Confidence 2 5799999988 77777665321000 00002222 2221 3443 467789999999999
Q ss_pred EccCCceeeee
Q 019258 237 DLRWQQQSIVL 247 (343)
Q Consensus 237 d~~~~~~~~~~ 247 (343)
|.++++.....
T Consensus 352 D~~tG~~lw~~ 362 (582)
T 1flg_A 352 DRSNGKLQNAF 362 (582)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEeccc
Confidence 99887655443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.93 Score=39.45 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=103.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCC-----C---EEEEE-eC--CCcEEEEEccccCCCCCe
Q 019258 126 SECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASP-----T---EFVTG-GF--GYGLQWWDLRRAGSGGPV 194 (343)
Q Consensus 126 ~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~---~l~t~-~~--d~~i~iwd~~~~~~~~~~ 194 (343)
..++.....+-+.++|+ +++ ....+.. . .+..+..-|+ . .+++. -. +++|.+|++.. ...++
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~-~l~~~~~-g--~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp--~~~~l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGK-MLHSYNT-G--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG--KNGTL 113 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSC-EEEEECC-S--CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT--TTCCE
T ss_pred cEEEEEcCCCCEEEEcC-CCc-EEEEccC-C--CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC--CCCce
Confidence 45666677788999999 554 3444432 2 3455444331 1 22333 33 58999997732 12345
Q ss_pred eEEecc--cCCCCCcccCeEEEEE--cCC-CCeEEEEEecCCcEEEEEccCC------ceeeeeecCCCCcccccCCccc
Q 019258 195 LQFKGN--FGSQGKASGMIHSVDI--HPS-RKHTCLAGGSSGTVFAWDLRWQ------QQSIVLSGVGTGEAVTHSLSES 263 (343)
Q Consensus 195 ~~~~~~--~~~~~~~~~~i~~v~~--~p~-~~~~~~sg~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~h~~ 263 (343)
..+... .-.... ..+..+++ +|. +...+++...+|.+..|++... ...+..+. ..+
T Consensus 114 ~~i~~~~~pv~t~~--~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-----------lgs 180 (355)
T 3amr_A 114 QSMTDPDHPIATAI--NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-----------MNS 180 (355)
T ss_dssp EECSCTTSCEECCC--SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-----------CSS
T ss_pred eeccccccCcCCCC--CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-----------CCC
Confidence 544211 000000 33566776 674 4334556778899999998431 11112221 234
Q ss_pred cEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc---cccc---ccc---cccceeeecC-CCCC-eeEEcc
Q 019258 264 EVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP---FELL---AEP---CAINSFDIDP-QNPS-DVICSL 332 (343)
Q Consensus 264 ~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~---~~~~---~~~---~~i~s~~~~~-~~~~-~l~~~~ 332 (343)
.+-.+...+... .|+.+-+|..||.++..... ..+. ... ..+-.+++-+ .++. +|+.++
T Consensus 181 q~EgcvvDd~~g----------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 181 QTEGMAADDEYG----------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp CEEEEEEETTTT----------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred CcceEEEcCCCC----------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 677888887766 78999999888777743111 1111 111 2466677732 1234 677766
Q ss_pred -CCceEEEEeC
Q 019258 333 -EWESIAIVSR 342 (343)
Q Consensus 333 -~~~~i~~~~~ 342 (343)
.+..+.+|++
T Consensus 251 QG~~s~~Vydr 261 (355)
T 3amr_A 251 QGNSSYAIYDR 261 (355)
T ss_dssp GGGTEEEEEES
T ss_pred CCCCEEEEEEC
Confidence 4458888876
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.71 E-value=1 Score=40.01 Aligned_cols=198 Identities=5% Similarity=-0.075 Sum_probs=113.4
Q ss_pred CCCCCeeEEEcc-CCC-eEEEEcCCCcEEEEEccCce----eeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEE
Q 019258 69 TPPTRISSLSTS-HQS-LVAASTLSGSLHVLSSAMQV----LLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNL 139 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~-~l~~~s~dg~v~v~~~~~~~----~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~ 139 (343)
.....+.+|+|. .++ ++.+-...+.|+.+++.... ...+.. ........+++. +..+++-...+.|.+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~~p~glavD~~~~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 185 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---CCCCCcccEEEEecCCceEEEECCCCeEEE
Confidence 344678899998 444 45555567888888876311 111111 112234555554 555566667888999
Q ss_pred EECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEE
Q 019258 140 VSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDI 216 (343)
Q Consensus 140 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 216 (343)
.+++... ...+... .......++..| ...+.-+.. .+.|...++.. .....+.... . ...+.|++
T Consensus 186 ~~~~g~~-~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG----~~~~~~~~~~----l--~~P~glav 253 (400)
T 3p5b_L 186 ADTKGVK-RKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----VDIYSLVTEN----I--QWPNGITL 253 (400)
T ss_dssp ECTTTCS-EEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS----CSCEEEECSS----C--SCEEEEEE
T ss_pred EeCCCCc-eEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC----CccEEEEECC----C--CceEEEEE
Confidence 9987653 3333322 222578999988 555554442 36788777744 3333332111 1 45789999
Q ss_pred cCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeE
Q 019258 217 HPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGIL 296 (343)
Q Consensus 217 ~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i 296 (343)
+|.+..++.+-...+.|..+|+.. .....+... ......-..|++. +.. .+++-...+.|
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~--------~~~l~~P~gl~v~--~~~---------lywtd~~~~~V 313 (400)
T 3p5b_L 254 DLLSGRLYWVDSKLHSISSIDVNG-GNRKTILED--------EKRLAHPFSLAVF--EDK---------VFWTDIINEAI 313 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS-CCCEEEEEC--------SSTTSSEEEEEEE--TTE---------EEEEESSSCSE
T ss_pred EeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeC--------CCCCCCCEEEEEe--CCE---------EEEecCCCCeE
Confidence 998888888877888999999864 333333210 1111223456553 232 45566666777
Q ss_pred EEEec
Q 019258 297 AVVEQ 301 (343)
Q Consensus 297 ~~~~~ 301 (343)
+.++.
T Consensus 314 ~~~~~ 318 (400)
T 3p5b_L 314 FSANR 318 (400)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 77763
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.9 Score=39.19 Aligned_cols=163 Identities=10% Similarity=0.053 Sum_probs=94.6
Q ss_pred EEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEE-EcC-----CCccceEEEEe---CCCCEEEEEeC----------
Q 019258 119 SGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRV-YDG-----NGLVGFNCVKW---ASPTEFVTGGF---------- 176 (343)
Q Consensus 119 ~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~-~~~-----~~~~~v~~~~~---~~~~~l~t~~~---------- 176 (343)
.++.|. ...|..++ ..++|..||...+. ...+ +.. .....+..+.+ .+.++|+.+..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCC-EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCe-EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 356665 45555555 78999999997653 2333 221 11113689999 56554444333
Q ss_pred ----CCcEEEEEcc---ccCCCCCeeEEecc--cCC----CCCcccCeEEEEEcCCCCeEEEEEecC-CcEEEEEccCCc
Q 019258 177 ----GYGLQWWDLR---RAGSGGPVLQFKGN--FGS----QGKASGMIHSVDIHPSRKHTCLAGGSS-GTVFAWDLRWQQ 242 (343)
Q Consensus 177 ----d~~i~iwd~~---~~~~~~~~~~~~~~--~~~----~~~~~~~i~~v~~~p~~~~~~~sg~~d-g~v~iwd~~~~~ 242 (343)
+..|..+|+. + ++.+...... ... .+........++..++|. ..++++.- +.|...|.....
T Consensus 95 ~~~g~~~v~~~Dl~~~~t---g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSEN---SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTT---CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC
T ss_pred ccCCCCEEEEEcCCcCCC---CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE
Confidence 6789999998 5 5555443311 100 000003478999999875 56778887 887777765321
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
...-..... . .......+.|+++|++. .|+....+|.|..++..
T Consensus 171 ~~~~~~~~~-~-----~~~~~G~nGIv~~pdg~----------~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESG-N-----GGQRPGYSGITFDPHSN----------KLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCC-C-----SSSCCSCSEEEEETTTT----------EEEEESSSSSEEEEECS
T ss_pred EeeeeecCC-C-----cccccCcceEEEeCCCC----------EEEEEcCCCeEEEEcCC
Confidence 111111000 0 11123467899999988 45555449999988865
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.83 Score=38.65 Aligned_cols=193 Identities=6% Similarity=0.000 Sum_probs=92.3
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC------CcEEEEEccCceeee
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS------GSLHVLSSAMQVLLS 106 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d------g~v~v~~~~~~~~~~ 106 (343)
++.+++.|+.+ ....-.++.++..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||.....-..
T Consensus 55 ~~~lyv~GG~~-~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQ-LFPIKRMDCYNVVKDS-WYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBS-SSBCCEEEEEETTTTE-EEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCC-CCCcceEEEEeCCCCe-EEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45677777766 2222245677765432 222223332222222222356677777654 468888887543222
Q ss_pred eeccCCccccCeEEEEecCCEEEEEeC---------CCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC
Q 019258 107 VDENSGFHVGPISGVDLTGSECVSVGE---------DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG 177 (343)
Q Consensus 107 ~~~~~~~h~~~v~~~~~~~~~~~s~s~---------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d 177 (343)
+.... ........+...+..++.|+. -..+..||..+.+ -..+........-.++....+..++.|+.+
T Consensus 133 ~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSML-TQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-WTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp ECCCS-SCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCc-CCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe-EEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 22111 111112233334666666653 3458889998863 333321111101122222345566666653
Q ss_pred -----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccC
Q 019258 178 -----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRW 240 (343)
Q Consensus 178 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~ 240 (343)
..+.+||+.. .....+......+ ....++.+ +..+++.|+.+ ..+.+||+.+
T Consensus 211 ~~~~~~~~~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKL----NEWKMVSPMPWKG----VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp TTEEBCCEEEEETTT----TEEEECCCCSCCB----SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCCCCceEEEeeCCC----CcEEECCCCCCCc----cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 4678888866 2233332111101 22233333 24577778754 4577888765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=1.7 Score=40.77 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=38.8
Q ss_pred CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 177 GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
++.|.-||+.+ ++.+.+...... ...++ +.. .+. +++.|+.||.++.||.++++....+.
T Consensus 465 ~G~l~A~D~~t---G~~~W~~~~~~~---~~~g~---~~t--agg-lvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVS---GKVVWEHKEHLP---LWAGV---LAT--AGN-LVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTT---CCEEEEEEESSC---CCSCC---EEE--TTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCC---CCEEEEecCCCC---Ccccc---eEe--CCC-EEEEECCCCcEEEEECCCCCEEEEec
Confidence 67899999988 776666543210 00011 111 233 45668999999999999987766654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.18 E-value=1.3 Score=37.61 Aligned_cols=194 Identities=12% Similarity=0.037 Sum_probs=90.4
Q ss_pred CCCeEEEEee----cCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-----CcEEEEEccCce
Q 019258 33 LSKLAVLAIY----DTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-----GSLHVLSSAMQV 103 (343)
Q Consensus 33 ~~~~l~t~s~----D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-----g~v~v~~~~~~~ 103 (343)
++.+++.|+. ++....-.++.+|..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||....+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTE-EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCe-EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 4567777776 322112246677765432 222222222211122222356666666543 357788876443
Q ss_pred eeeeeccCCccccCeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC-
Q 019258 104 LLSVDENSGFHVGPISGVDLTGSECVSVGED-----GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG- 177 (343)
Q Consensus 104 ~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d- 177 (343)
-..+.... ........+.+.+..++.|+.+ ..+..||+.+.+ -...........-.++....+..++.|+.+
T Consensus 149 W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 226 (308)
T 1zgk_A 149 WHLVAPML-TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVLHNCIYAAGGYDG 226 (308)
T ss_dssp EEECCCCS-SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EeECCCCC-ccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEECCEEEEEeCCCC
Confidence 22222111 1111122333346666777654 458888987763 222211111101122222345566777664
Q ss_pred ----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-----cEEEEEccC
Q 019258 178 ----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-----TVFAWDLRW 240 (343)
Q Consensus 178 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-----~v~iwd~~~ 240 (343)
..+.+||+.. .....+......+ .....+.+ +..+++.|+.++ .+.+||+.+
T Consensus 227 ~~~~~~v~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 227 QDQLNSVERYDVET----ETWTFVAPMKHRR----SALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp SSBCCCEEEEETTT----TEEEECCCCSSCC----BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCccceEEEEeCCC----CcEEECCCCCCCc----cceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCC
Confidence 5688899866 2233322111101 11222222 235777777543 467777765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.87 E-value=1.5 Score=36.87 Aligned_cols=195 Identities=15% Similarity=0.076 Sum_probs=93.3
Q ss_pred CCCeEEEEe-ecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-----CcEEEEEccCce---
Q 019258 33 LSKLAVLAI-YDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-----GSLHVLSSAMQV--- 103 (343)
Q Consensus 33 ~~~~l~t~s-~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-----g~v~v~~~~~~~--- 103 (343)
++.+++.|+ .+.....-.++.++..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||.....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE-WSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe-EEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 456788887 4322222246677775432 222222332221222222356677777654 468888877443
Q ss_pred eeeeeccCCccccCeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC-
Q 019258 104 LLSVDENSGFHVGPISGVDLTGSECVSVGED-----GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG- 177 (343)
Q Consensus 104 ~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d- 177 (343)
-..+.... ........+...+..++.|+.+ ..+.++|..+.+ -..+........-.++....+..++.|+.+
T Consensus 93 W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 93 WYSVAPMN-VRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp CEEECCCS-SCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEECCCCC-CCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe-EEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence 22222111 1111122333346666666644 357888987763 222221111101122222235566666654
Q ss_pred ----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccCC
Q 019258 178 ----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRWQ 241 (343)
Q Consensus 178 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~~ 241 (343)
..+..||+.+ .....+......+ ....++.+ +..+++.|+.+ ..+.+||+++.
T Consensus 171 ~~~~~~~~~~d~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 171 LNILNSVEKYDPHT----GHWTNVTPMATKR----SGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp SCBCCCEEEEETTT----TEEEEECCCSSCC----BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCC----CcEEeCCCCCccc----ccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 5688888866 2333332111111 11223333 24677788764 46889998764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.19 E-value=3 Score=37.35 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCC--CccceEEEEeCCCCEEEEEeCCCcEEEEEccccC-CCC------C--
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN--GLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAG-SGG------P-- 193 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~-~~~------~-- 193 (343)
+..++.+- ++.||.-++......+.+.... ....+..+..+|.+.+++-..+.+|.+-.+..+. ... +
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccc
Confidence 44444332 3567777766432222222221 1114777888995556666678899999886300 001 1
Q ss_pred eeEEecccCCCCCcccCeEEEEEcCCCCe--EEEEEecCCcEEEEEccC-CceeeeeecCCCCcccccCCccccEEEEEE
Q 019258 194 VLQFKGNFGSQGKASGMIHSVDIHPSRKH--TCLAGGSSGTVFAWDLRW-QQQSIVLSGVGTGEAVTHSLSESEVWEVQY 270 (343)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~--~~~sg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 270 (343)
.+.+..... +.....+|..+.|||-+.. .+++=.+|+.|++||+.. ...|..+. .. ....-.......|.+++|
T Consensus 111 ~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~-k~-~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 111 IFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN-KP-NNSFGLDARVNDITDLEF 187 (452)
T ss_dssp EEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES-CC-CSEEESCSSCCCEEEEEE
T ss_pred eeEEEcCCc-ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh-cc-ccccCCCcccceEEEEEE
Confidence 112222110 1111267999999998743 667889999999999975 33444221 00 001111233467889999
Q ss_pred eecCCCCcCCCCCccceEE--EecCCeEEE
Q 019258 271 DCHTKSSNISSSRVLPAMF--CSEDGILAV 298 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s--~s~dg~i~~ 298 (343)
.+++- .|+. .+..|-|+-
T Consensus 188 g~~~l----------TLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGL----------TLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSS----------CEEEEECTTSCEEEE
T ss_pred cCCCc----------EEEEEecCCCCCEEE
Confidence 87533 4555 558898874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.19 E-value=2.6 Score=38.66 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=91.6
Q ss_pred eEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEEcCCC--ccceEEEEe-------CC-CCEEEEEeCCC-----
Q 019258 118 ISGVDLT----GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNG--LVGFNCVKW-------AS-PTEFVTGGFGY----- 178 (343)
Q Consensus 118 v~~~~~~----~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~--~~~v~~~~~-------~~-~~~l~t~~~d~----- 178 (343)
-..|++. +..+++-...+.|++.|+.++ .+..+..... ......++| ++ ...++.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3566665 234444444577888998887 3555543321 124788999 88 55466565543
Q ss_pred --cEEEEEccccCCCCCe-----eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc-------CCce-
Q 019258 179 --GLQWWDLRRAGSGGPV-----LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR-------WQQQ- 243 (343)
Q Consensus 179 --~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~-------~~~~- 243 (343)
.|.+.+... .+... ..+.. . ...+.++++|++..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~--~G~~~~~~~~~~v~~-~-------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 220 SPSVYIIKRNA--DGTFDDRSDIQLIAA-Y-------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp EEEEEEEECCT--TSCCSTTSCEEEEEE-E-------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEecCC--CCceeecccceeecc-C-------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 255665322 11111 12221 1 2356788999777888888889999999987 3322
Q ss_pred ----e-----e-eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 244 ----S-----I-VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 244 ----~-----~-~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+ . .+.. ......-..|+|+|++.. ..++-+....|+.++..
T Consensus 290 tp~~~~~~g~~~~l~~---------~~~~~~p~~ia~~p~G~~---------lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFT---------IADPSWEFQIFIHPTGKY---------AYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCBGGGCTTTEEEEEE---------CSSSSCCEEEEECTTSSE---------EEEEETTTTEEEEEEEE
T ss_pred cccccccccccceeEe---------cCCCCCceEEEEcCCCCE---------EEEEeCCCCEEEEEecC
Confidence 0 0 1110 112234578999999873 34454667788886653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=93.92 E-value=2.9 Score=36.33 Aligned_cols=189 Identities=11% Similarity=0.106 Sum_probs=105.4
Q ss_pred CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec------CCE--E-E-EEeC--CCcEEEEECCCCceEEE
Q 019258 83 SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT------GSE--C-V-SVGE--DGRVNLVSVIGGGEFKR 150 (343)
Q Consensus 83 ~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~--~-~-s~s~--dg~v~~wd~~~~~~~~~ 150 (343)
.++++....+-+.+||+. ++.+..... +.++.++.- ++. + + +.-. +++|.+++++.......
T Consensus 41 s~ii~t~k~~gL~Vydl~-G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLD-GKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp CEEEEEETTTEEEEEETT-SCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred cEEEEEcCCCCEEEEcCC-CcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 456666667889999994 555544321 355665554 222 2 3 3333 58999997742111233
Q ss_pred EEcC------CCccceEEEEe--CC-CC--EEEEEeCCCcEEEEEccccCC----CCCeeEEecccCCCCCcccCeEEEE
Q 019258 151 VYDG------NGLVGFNCVKW--AS-PT--EFVTGGFGYGLQWWDLRRAGS----GGPVLQFKGNFGSQGKASGMIHSVD 215 (343)
Q Consensus 151 ~~~~------~~~~~v~~~~~--~~-~~--~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~v~ 215 (343)
.... .....++.+++ ++ .+ +++....++.+..|++..... .+.+.+|... +.+..+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--------sq~Egcv 186 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--------SQTEGMA 186 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--------SCEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--------CCcceEE
Confidence 2211 11125677777 55 33 577777799999999954111 2334445432 4577888
Q ss_pred EcCCCCeEEEEEecCCcEEEEEccCC----ceeeeeecCCCCcccccCCccccEEEEEEee--cCCCCcCCCCCccceEE
Q 019258 216 IHPSRKHTCLAGGSSGTVFAWDLRWQ----QQSIVLSGVGTGEAVTHSLSESEVWEVQYDC--HTKSSNISSSRVLPAMF 289 (343)
Q Consensus 216 ~~p~~~~~~~sg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~~~~~~~~~~~l~s 289 (343)
.++....+ ..+-++.-|..+|.+-. ...+..... ......+-.|+.-+ ++.. +.++|
T Consensus 187 vDd~~g~L-yv~eEd~GIw~~da~p~~~~~~~~v~~~~~--------g~l~aDvEGLai~~~~~g~g--------yLivS 249 (355)
T 3amr_A 187 ADDEYGRL-YIAEEDEAIWKFSAEPDGGSNGTVIDRADG--------RHLTRDIEGLTIYYAADGKG--------YLMAS 249 (355)
T ss_dssp EETTTTEE-EEEETTTEEEEEECSTTSCSCCEEEEEBSS--------SSBCSCEEEEEEEECGGGCE--------EEEEE
T ss_pred EcCCCCeE-EEecccceEEEEeCCcCCCCCceEEEEecC--------CccccCcceEEEEecCCCCE--------EEEEE
Confidence 88876555 56778766666665421 122222210 11234577777753 3332 04455
Q ss_pred EecCCeEEEEecC
Q 019258 290 CSEDGILAVVEQG 302 (343)
Q Consensus 290 ~s~dg~i~~~~~~ 302 (343)
+-.++++.+|+..
T Consensus 250 sQG~~s~~Vydr~ 262 (355)
T 3amr_A 250 SQGNSSYAIYDRQ 262 (355)
T ss_dssp EGGGTEEEEEESS
T ss_pred cCCCCEEEEEECC
Confidence 5467789999874
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.88 E-value=2.9 Score=36.06 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=96.7
Q ss_pred eeEEEcc-CCCeEEEEc-CCCcEEEEEccCceeeeeeccCC-c--c--ccCeEEEEe---c--CCEEEEEe---------
Q 019258 74 ISSLSTS-HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSG-F--H--VGPISGVDL---T--GSECVSVG--------- 132 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~-~--h--~~~v~~~~~---~--~~~~~s~s--------- 132 (343)
-.+.+|. ....|..++ ..|+|..|+...+....+ .... . . ...+.++.| . +..+++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 3577887 445555555 799999999874322222 1111 0 1 113578888 4 44444333
Q ss_pred ----CCCcEEEEECC---CCceEEEEEc-CC----------CccceEEEEeCC-CCEEEEEeCC-CcEEEEEccccCCCC
Q 019258 133 ----EDGRVNLVSVI---GGGEFKRVYD-GN----------GLVGFNCVKWAS-PTEFVTGGFG-YGLQWWDLRRAGSGG 192 (343)
Q Consensus 133 ----~dg~v~~wd~~---~~~~~~~~~~-~~----------~~~~v~~~~~~~-~~~l~t~~~d-~~i~iwd~~~~~~~~ 192 (343)
.+..|..+|+. +++.....-- .. .......+...+ ++..++++.. +.|...+... +
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG----~ 169 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG----K 169 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS----C
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC----C
Confidence 26779999998 6543333221 00 111478889888 8888888888 8766666533 3
Q ss_pred CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 193 PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
.+..+..... ......-.+.|+++|++..+++..+ .|.+..+|++.+
T Consensus 170 ~~~~~~~~~~-~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 170 TVSTFAWESG-NGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp CEEEEEECCC-CSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred EEeeeeecCC-CcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 3333321110 0000023779999999987777666 999999999853
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.82 E-value=2.7 Score=35.53 Aligned_cols=194 Identities=12% Similarity=-0.025 Sum_probs=91.9
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcC----C-----CcEEEEEccCce
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTL----S-----GSLHVLSSAMQV 103 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~----d-----g~v~v~~~~~~~ 103 (343)
++.+++.|+.++. ..-.++.+|..... +..+..++.+-.-.++...++.+++.|+. + ..+.+||....+
T Consensus 24 ~~~i~v~GG~~~~-~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQ-SLSYLEAYNPSNGT-WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSS-BCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCC-CcceEEEEcCCCCe-EeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 5677888886322 12246677765432 22222223222112233335666666665 2 467788876443
Q ss_pred eeeeeccCCccccCeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC-
Q 019258 104 LLSVDENSGFHVGPISGVDLTGSECVSVGED-----GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG- 177 (343)
Q Consensus 104 ~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d- 177 (343)
-..+.... ........+.+.+..++.|+.+ ..+..||..+.+ -...........-.++....+..++.|+.+
T Consensus 102 W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 102 WSPCAPMS-VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp EEECCCCS-SCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EeECCCCC-cCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCccccceEEEEECCEEEEEeCCCC
Confidence 22222111 1111122333346666666643 357888987763 222211111101112222245566666654
Q ss_pred ----CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccCC
Q 019258 178 ----YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRWQ 241 (343)
Q Consensus 178 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~~ 241 (343)
..+..||+.. .....+......+ ....++.+ +..+++.|+.+ ..+.+||+.+.
T Consensus 180 ~~~~~~~~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 180 TNRLNSAECYYPER----NEWRMITAMNTIR----SGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SCBCCCEEEEETTT----TEEEECCCCSSCC----BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcCceEEEEeCCC----CeEeeCCCCCCcc----ccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 4588888865 2222222111111 11223333 24577778765 45889998763
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.64 E-value=2.2 Score=37.13 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC---CCeEEEEEecC-----
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS---RKHTCLAGGSS----- 230 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~~~sg~~d----- 230 (343)
....++|.|...++.+..++.|++++ . .....+..+.... .+. .....|+++|+ +..++++-..+
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~-g~~~~~~~~~v~~--~g~--~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--E-GRLSTYAELSVYH--RGE--SGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--T-TEEEEEEECCCCC--STT--CSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--C-CCccEeecceEee--cCC--CCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 47899999944466667789999998 3 0112222221111 111 45889999997 55666665543
Q ss_pred CcEEEEEccC
Q 019258 231 GTVFAWDLRW 240 (343)
Q Consensus 231 g~v~iwd~~~ 240 (343)
..|..|+...
T Consensus 105 ~~v~r~~~~~ 114 (352)
T 2ism_A 105 NQVVRLRHLG 114 (352)
T ss_dssp EEEEEEEECS
T ss_pred cEEEEEEeCC
Confidence 6788888764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=5.3 Score=37.87 Aligned_cols=156 Identities=9% Similarity=-0.024 Sum_probs=95.3
Q ss_pred CCeeEEEcc-CC-CeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS-HQ-SLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~-~~-~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
..+.+|+|. .+ .++.+-..++.|..+++.......+... ......=.+++|. ++.+++-...+.|.+.+++... .
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~ 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-R 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-C
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-E
Confidence 467789998 44 4455556688888888763322222211 1111222344545 5555666677889999987653 2
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
..+.. .......+++..| ...|.-+.. .+.|...++.. .....+...- .....|++++.+..++.
T Consensus 115 ~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG----~~~~~l~~~~-------~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 115 QVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG----SERTTLVPNV-------GRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CSCEEEECSC-------SSEEEEEEETTTTEEEE
T ss_pred EEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC----CceEEEECCC-------CCcceEEEccccCEEEE
Confidence 33332 2222578999998 555555543 46676666643 3333333211 56889999998778888
Q ss_pred EEecCCcEEEEEccCC
Q 019258 226 AGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~ 241 (343)
+-...+.|..+|+...
T Consensus 183 aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGL 198 (628)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred EECCCCEEEEEcCCCC
Confidence 8888889999998653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.41 E-value=3.2 Score=35.17 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=69.5
Q ss_pred CCCeEEEEeec--CCC--CCC--ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-------CcEEEEEc
Q 019258 33 LSKLAVLAIYD--TDA--DSP--SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-------GSLHVLSS 99 (343)
Q Consensus 33 ~~~~l~t~s~D--~~~--~~~--~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-------g~v~v~~~ 99 (343)
++.+++.|+.. ... ... .++.++..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||.
T Consensus 56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SSCEEEEESSCC-------CCCBEEEEEETTTTE-EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CCEEEEECCcccCccccCCCccccEEEEeCCCCc-EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeC
Confidence 56778888742 111 111 15566664432 222223332222223333356677777653 24667777
Q ss_pred cCceeeeeeccCCccccCeEEEEecCCEEEEEeC------CCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEE
Q 019258 100 AMQVLLSVDENSGFHVGPISGVDLTGSECVSVGE------DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVT 173 (343)
Q Consensus 100 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t 173 (343)
...+-..+...... ......+...+..++.|+. -..+..+|..+.+ -...........-.++....+..++.
T Consensus 135 ~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~ 212 (318)
T 2woz_A 135 VAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIHKGKIVIA 212 (318)
T ss_dssp TTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred CCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCcccceEEEECCEEEEE
Confidence 64432222111101 1111223334666666663 2358899998863 33322111110112222234566777
Q ss_pred EeCC-----CcEEEEEccc
Q 019258 174 GGFG-----YGLQWWDLRR 187 (343)
Q Consensus 174 ~~~d-----~~i~iwd~~~ 187 (343)
|+.+ ..+.+||+.+
T Consensus 213 GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 213 GGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEETTEEEEEEEEEETTT
T ss_pred cCcCCCCccceEEEEECCC
Confidence 7653 3466788866
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.34 E-value=3.5 Score=35.33 Aligned_cols=229 Identities=11% Similarity=0.057 Sum_probs=114.6
Q ss_pred CCCeeEEEcc-CCCeEEEEcCCCcEEEEEcc-CceeeeeeccC-CccccCeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 019258 71 PTRISSLSTS-HQSLVAASTLSGSLHVLSSA-MQVLLSVDENS-GFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 71 ~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~-~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
...+.+|.|. .+..++ .+..|.| |... .++.-...... ......+.++.+..+.++.++.++.|.. ..+.++.
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC
Confidence 4578999998 444555 4556654 4333 22221111110 1123457788877555555666775443 3333432
Q ss_pred EEEEEcC--CCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 148 FKRVYDG--NGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 148 ~~~~~~~--~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
-...... ... .+..+.+.+...++.++.++.|.. ... .++......... . ..+..+.+.|++. +++
T Consensus 111 W~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~g~v~~--S~D--gG~tW~~~~~~~--~----~~~~~~~~~~~~~-~~~ 178 (327)
T 2xbg_A 111 WSQIPLDPKLPG-SPRLIKALGNGSAEMITNVGAIYR--TKD--SGKNWQALVQEA--I----GVMRNLNRSPSGE-YVA 178 (327)
T ss_dssp CEECCCCTTCSS-CEEEEEEEETTEEEEEETTCCEEE--ESS--TTSSEEEEECSC--C----CCEEEEEECTTSC-EEE
T ss_pred ceECccccCCCC-CeEEEEEECCCCEEEEeCCccEEE--EcC--CCCCCEEeecCC--C----cceEEEEEcCCCc-EEE
Confidence 2222111 111 366776655455555666665432 211 244444433211 1 4588999999764 444
Q ss_pred EEecCCcEEE-EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC-C
Q 019258 226 AGGSSGTVFA-WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG-E 303 (343)
Q Consensus 226 sg~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~-~ 303 (343)
. +.+|.+.. +|-. +..-..+. ......+..+.+.+++. ++.++.+|.++....+ .
T Consensus 179 ~-g~~G~~~~S~d~g-G~tW~~~~----------~~~~~~~~~~~~~~~g~-----------~~~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 179 V-SSRGSFYSTWEPG-QTAWEPHN----------RTTSRRLHNMGFTPDGR-----------LWMIVNGGKIAFSDPDNS 235 (327)
T ss_dssp E-ETTSSEEEEECTT-CSSCEEEE----------CCSSSCEEEEEECTTSC-----------EEEEETTTEEEEEETTEE
T ss_pred E-ECCCcEEEEeCCC-CCceeECC----------CCCCCccceeEECCCCC-----------EEEEeCCceEEEecCCCC
Confidence 4 45555544 3321 11111111 22345788888887654 5677778888776322 1
Q ss_pred Ccccccc-----cccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 304 EPFELLA-----EPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 304 ~~~~~~~-----~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
...+... ....+.++.+.+ ++..+++|. ++.++..
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i~~S 275 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGALLCS 275 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCEEEE
T ss_pred CeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeEEEe
Confidence 1111111 123467787776 345555554 5666543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.16 E-value=5.1 Score=36.71 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=86.8
Q ss_pred eeEEEcc--CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCccccCeEEEEe-------c--CCEEEEEeCCC-c----
Q 019258 74 ISSLSTS--HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDL-------T--GSECVSVGEDG-R---- 136 (343)
Q Consensus 74 v~~v~~~--~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~--~~~~~s~s~dg-~---- 136 (343)
...|+|. +.+.|+++. ..+.|++.|........+.............++| + ++.++.+...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 4566666 234444444 3456777777654433333221112335788999 6 66565555443 2
Q ss_pred --EEEEECCC-CceE----EEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEcc-------ccCCCCC-------
Q 019258 137 --VNLVSVIG-GGEF----KRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLR-------RAGSGGP------- 193 (343)
Q Consensus 137 --v~~wd~~~-~~~~----~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~-------~~~~~~~------- 193 (343)
|.+.+-.. +... ...+.... ....++.+| ..++++-..++.|..+|+. . +..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~--~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t---g~~~tp~~~~ 295 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK--QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN---GGSWDPIVKN 295 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES--CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT---TCCCCCBGGG
T ss_pred ceEEEEecCCCCceeecccceeeccCC--CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC---ceeecccccc
Confidence 55665333 1110 01111111 345667788 4455556668889999997 3 221
Q ss_pred ----eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 194 ----VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 194 ----~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
...+.... .. ..-..|+++|++..++++-+..+.|+.+|..
T Consensus 296 ~~g~~~~l~~~~-~~----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTIA-DP----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEECS-SS----SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEecC-CC----CCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 12222111 01 4467999999998677777888899997754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.84 E-value=3.8 Score=34.37 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=91.8
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC-----CcEEEEEccCceeeeee
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS-----GSLHVLSSAMQVLLSVD 108 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d-----g~v~v~~~~~~~~~~~~ 108 (343)
+.+++.|+.+.. ..-.++.++..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||....+-..+.
T Consensus 16 ~~i~v~GG~~~~-~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPK-AIRSVECYDFKEER-WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSS-BCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCC-CCCcEEEEcCcCCc-EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 467777876543 11235677775432 222222222211122222356667776644 35778887644322222
Q ss_pred ccCCccccCeEEEEecCCEEEEEeCCC-----cEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCC------
Q 019258 109 ENSGFHVGPISGVDLTGSECVSVGEDG-----RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFG------ 177 (343)
Q Consensus 109 ~~~~~h~~~v~~~~~~~~~~~s~s~dg-----~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d------ 177 (343)
... ........+.+.+..++.|+.++ .+.+||+.+.+ -...........-.++....+..++.|+.+
T Consensus 94 ~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMR-DRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCS-SCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred CCC-ccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence 111 11112223334477777777553 46778887763 333221111101122222335556666542
Q ss_pred -CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC-----cEEEEEccCC
Q 019258 178 -YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG-----TVFAWDLRWQ 241 (343)
Q Consensus 178 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg-----~v~iwd~~~~ 241 (343)
..+..||+.. .....+......+ .....+.+ +..+++.|+.++ .+.+||+.+.
T Consensus 172 ~~~~~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 172 LSTVECYNATT----NEWTYIAEMSTRR----SGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp CCCEEEEETTT----TEEEEECCCSSCC----BSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred ccEEEEEeCCC----CcEEECCCCcccc----ccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 4578888865 2233332111111 11222333 236777787653 6889998763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.58 E-value=4.3 Score=34.34 Aligned_cols=152 Identities=9% Similarity=-0.043 Sum_probs=72.2
Q ss_pred CCCeEEEEeec----CCCCCC--ceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC--------CcEEEEE
Q 019258 33 LSKLAVLAIYD----TDADSP--SLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS--------GSLHVLS 98 (343)
Q Consensus 33 ~~~~l~t~s~D----~~~~~~--~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d--------g~v~v~~ 98 (343)
++.+++.|+.+ ...... .++.++..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||
T Consensus 45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CCEEEEEcCcccCCCCCccccccceEEecCCCCe-EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC
Confidence 56788888862 111111 14566664432 222333332211122222356666666632 4578888
Q ss_pred ccCceeeeeeccCCccccCeEEEEecCCEEEEEeC-C-----CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGE-D-----GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~-d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
....+-..+.... ........+...+..++.|+. + ..+..+|..+.+ -..+........-.++....+..++
T Consensus 124 ~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv 201 (315)
T 4asc_A 124 RLSFKWGESDPLP-YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPMQTARSLFGATVHDGRIIV 201 (315)
T ss_dssp TTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCcEeECCCCC-CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCCCCchhceEEEEECCEEEE
Confidence 8754322222111 111122233344666777765 2 468889988763 2222111111011222223456777
Q ss_pred EEeCCC-----cEEEEEccc
Q 019258 173 TGGFGY-----GLQWWDLRR 187 (343)
Q Consensus 173 t~~~d~-----~i~iwd~~~ 187 (343)
.|+.++ .+.+||+.+
T Consensus 202 ~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 202 AAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp EEEECSSSEEEEEEEEETTT
T ss_pred EeccCCCCccceEEEEECCC
Confidence 777654 477888866
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.55 E-value=5.6 Score=35.61 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCcEEEEEccCceeeeeeccCC-ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCc-----------
Q 019258 81 HQSLVAASTLSGSLHVLSSAMQVLLSVDENSG-FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGG----------- 146 (343)
Q Consensus 81 ~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~----------- 146 (343)
++..++.+ .++.||.-++............. .-...|..+..+ |..++.. .+..|.+-.+..+.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccc
Confidence 44444444 34677777776332233332211 112356778887 5555555 55578888886321
Q ss_pred -eEEEEEcCC----CccceEEEEeCC----CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCC--CCCcccCeEEEE
Q 019258 147 -EFKRVYDGN----GLVGFNCVKWAS----PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGS--QGKASGMIHSVD 215 (343)
Q Consensus 147 -~~~~~~~~~----~~~~v~~~~~~~----~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~v~ 215 (343)
++....-+. ....|..+.||| +..|++-..|++|++||+.. +..+|. .+...... .......|.+++
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-SQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-TTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-CCCCCc-chhccccccCCCcccceEEEEE
Confidence 111111111 123699999999 56899999999999999986 123333 33211100 000115688999
Q ss_pred EcCCCCeEEEE--EecCCcEEEE
Q 019258 216 IHPSRKHTCLA--GGSSGTVFAW 236 (343)
Q Consensus 216 ~~p~~~~~~~s--g~~dg~v~iw 236 (343)
|.+.+-. +.. .+++|.|+-.
T Consensus 187 Fg~~~lT-LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLT-LYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSC-EEEEECTTSCEEEEE
T ss_pred EcCCCcE-EEEEecCCCCCEEEE
Confidence 9986533 334 3478888754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=5 Score=34.99 Aligned_cols=146 Identities=12% Similarity=-0.024 Sum_probs=76.3
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC--CCC-eEEEEEec--CCcEEEEEccCCceeeeeecC
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP--SRK-HTCLAGGS--SGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~-~~~~sg~~--dg~v~iwd~~~~~~~~~~~~~ 250 (343)
.+|.|.++|+.. +......+......-....-..+.+++.+ ++. .++++-.. +.+|.+|++........+...
T Consensus 81 ~~G~I~~~d~~~--~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTS--SSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCC--CCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec
Confidence 699999999875 22233333211100000113467777765 343 45555443 567888887653332222210
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEe-----------------cCCeEEEEecCCCccccccccc
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCS-----------------EDGILAVVEQGEEPFELLAEPC 313 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s-----------------~dg~i~~~~~~~~~~~~~~~~~ 313 (343)
. ...--...+++.+.+++. +.++.. ..|.|+.++.+ +...+...-.
T Consensus 159 ~------~g~~~~~pND~~v~~~G~----------fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~~~l~ 221 (355)
T 3sre_A 159 I------RHKLLPSVNDIVAVGPEH----------FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVAEGFD 221 (355)
T ss_dssp E------CCTTCSSEEEEEEEETTE----------EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEEEEES
T ss_pred c------ccCCCCCCceEEEeCCCC----------EEecCCcEeCCcccccchhhccCCccEEEEEECC-eEEEeecCCc
Confidence 0 011124578999999876 233322 23567777764 2323333334
Q ss_pred ccceeeecCCCCCee-EEccCCceEEEEe
Q 019258 314 AINSFDIDPQNPSDV-ICSLEWESIAIVS 341 (343)
Q Consensus 314 ~i~s~~~~~~~~~~l-~~~~~~~~i~~~~ 341 (343)
.-|.++++|+ ++.| ++-+..+.|+.|.
T Consensus 222 ~pNGia~spD-g~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 222 FANGINISPD-GKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp SEEEEEECTT-SSEEEEEEGGGTEEEEEE
T ss_pred ccCcceECCC-CCEEEEEeCCCCeEEEEE
Confidence 5699999994 4444 4444556787764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.36 E-value=11 Score=38.57 Aligned_cols=247 Identities=12% Similarity=-0.003 Sum_probs=121.3
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc----CCCeEEEEcCCCcE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS----HQSLVAASTLSGSL 94 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~l~~~s~dg~v 94 (343)
.+|..++-..........+++++.-+..+ +|++..-.-.........++....++.+... ...+|+.+..+.+
T Consensus 375 ~PI~D~~v~d~~~~~~~~i~~~sG~g~~g--sL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T- 451 (1158)
T 3ei3_A 375 GPIVDMCVVDLERQGQGQLVTCSGAFKEG--SLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT- 451 (1158)
T ss_dssp CSEEEEEEECTTSSSCCEEEEEECCGGGC--EEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-
T ss_pred CCceeEEEEccCCCCCCeEEEEECcCCCC--eEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-
Confidence 34555544432212334566555444334 4656554222111111123333456666543 3456776666665
Q ss_pred EEEEccCc--eeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQ--VLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
+|+.+... +++....+. .-...+.+-...++.++=....+ |++.+...... ...+.......|...+.+.. .++
T Consensus 452 ~Vl~i~~e~veev~~~gf~-~~~~TL~~~~l~~~~ivQVt~~~-Irli~~~~~~~-~~~w~~p~~~~I~~As~n~~-~vv 527 (1158)
T 3ei3_A 452 RVLMLNGEEVEETELMGFV-DDQQTFFCGNVAHQQLIQITSAS-VRLVSQEPKAL-VSEWKEPQAKNISVASCNSS-QVV 527 (1158)
T ss_dssp EEEEEETTEEEEECCTTCC-SSSCEEEEEEETTTEEEEEESSC-EEEEESSSCCE-EEEECCTTCCCCCEEEECSS-EEE
T ss_pred EEEEEeCCccccccccccc-CCCCcEEEEEcCCCeEEEEecCE-EEEEECCCCeE-EEEEECCCCCEEEEEEeCCC-EEE
Confidence 67776422 222111110 01111222222244444444444 77777765433 33333333225777776654 455
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-----CeEEEEEec-CCcEEEEEccCCceeee
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-----KHTCLAGGS-SGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-----~~~~~sg~~-dg~v~iwd~~~~~~~~~ 246 (343)
.+. ++.+.++++.. ++ +....... -...|.|+++.|.. ..+++.|.. |++|+++++...+ +..
T Consensus 528 va~-g~~l~~fel~~---~~-L~~~~~~~-----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~-~~~ 596 (1158)
T 3ei3_A 528 VAV-GRALYYLQIHP---QE-LRQISHTE-----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE-LLH 596 (1158)
T ss_dssp EEE-TTEEEEEEEET---TE-EEEEEEEE-----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC-EEE
T ss_pred EEE-CCEEEEEEeeC---Cc-eeeecccC-----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC-eEE
Confidence 554 67888888765 22 22221111 01569999998643 256788886 9999999997643 333
Q ss_pred eecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 247 LSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 247 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..... -+....+|.+..-+.. ++|..+-.||.+..+.
T Consensus 597 ~~~L~---------~~~~p~si~l~~~~~~--------~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 597 KEMLG---------GEIIPRSILMTTFESS--------HYLLCALGDGALFYFG 633 (1158)
T ss_dssp EEECC---------SSCCEEEEEEEEETTE--------EEEEEEETTSEEEEEE
T ss_pred EEECC---------CCCCCcEEEEEEeCCC--------cEEEEEeCCCeEEEEE
Confidence 22111 1123334444322110 2788888999876543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=5.6 Score=34.57 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCC-CeeEEecccCCCCCcccCeEEEEEcCC---CCeEEEEEec---C-
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGG-PVLQFKGNFGSQGKASGMIHSVDIHPS---RKHTCLAGGS---S- 230 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~~~sg~~---d- 230 (343)
....++|.+...++.+..++.|+++|. . +. .+..+.... .+. .....|+++|+ +..++++-+. +
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~---G~~~~~~~~v~~--~g~--~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-S---GKKLVASFDVAN--VGE--AGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-S---CEEEEEECCCCC--STT--CSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-C---CceEeeccceee--cCC--CceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 478899998556777777899999873 3 22 222221101 111 45889999997 4566665442 3
Q ss_pred ---CcEEEEEccC
Q 019258 231 ---GTVFAWDLRW 240 (343)
Q Consensus 231 ---g~v~iwd~~~ 240 (343)
..|..|+...
T Consensus 102 ~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 102 HIRNRVIRGRLDG 114 (354)
T ss_dssp CEEEEEEEEEECS
T ss_pred CcceEEEEEEECC
Confidence 5688887654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=6.6 Score=34.22 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=84.5
Q ss_pred eeEEEccCCCeEEEEc-------------CCCcEEEEEccCc--e--eeeeecc-CCccccCeEEEEec----CC-EEEE
Q 019258 74 ISSLSTSHQSLVAAST-------------LSGSLHVLSSAMQ--V--LLSVDEN-SGFHVGPISGVDLT----GS-ECVS 130 (343)
Q Consensus 74 v~~v~~~~~~~l~~~s-------------~dg~v~v~~~~~~--~--~~~~~~~-~~~h~~~v~~~~~~----~~-~~~s 130 (343)
..++......++++++ .+|.|.++|..+. + .+.+... .......-..+++. +. .++.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4455545445566665 6899999998622 1 2222211 11122345666653 22 3433
Q ss_pred E-eC--CCcEEEEECCCCc---eEEEEEcCCCccceEEEEeCCCCEEEEEeC------------------CCcEEEEEcc
Q 019258 131 V-GE--DGRVNLVSVIGGG---EFKRVYDGNGLVGFNCVKWASPTEFVTGGF------------------GYGLQWWDLR 186 (343)
Q Consensus 131 ~-s~--dg~v~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~------------------d~~i~iwd~~ 186 (343)
+ .. +.++-+|+++... .....+.+.......++...+...|..++. .+.|..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 3 22 5677888775421 122333333334578888888444444432 133444433
Q ss_pred ccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccC
Q 019258 187 RAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRW 240 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~ 240 (343)
++ +..+...- ..-+.++|+|++..++++-+..++|..||+..
T Consensus 211 ----~~-~~~~~~~l-------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 ----ND-VRVVAEGF-------DFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ----TC-CEEEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ----Ce-EEEeecCC-------cccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 21 22221111 45789999999988888888889999999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.28 E-value=5.9 Score=33.22 Aligned_cols=191 Identities=9% Similarity=-0.065 Sum_probs=92.4
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCC----CcEEEEEccCceeeeeec
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLS----GSLHVLSSAMQVLLSVDE 109 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~d----g~v~v~~~~~~~~~~~~~ 109 (343)
+.+++.|+.+.. -.++.+|..... +..+..++.+-.-.++...++.+++.|+.+ ..+.+||....+-..+..
T Consensus 12 ~~l~~~GG~~~~---~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQP---QSCRYFNPKDYS-WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSST---TSEEEEETTTTE-EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCC---ceEEEecCCCCC-EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 456777876541 246677775432 222222332221122222356667777654 567888877543222222
Q ss_pred cCCccccCeEEEEecCCEEEEEeCC------CcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC-------
Q 019258 110 NSGFHVGPISGVDLTGSECVSVGED------GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF------- 176 (343)
Q Consensus 110 ~~~~h~~~v~~~~~~~~~~~s~s~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~------- 176 (343)
.. ........+.+.+..++.|+.+ ..+.+||..+.+ -...-.......-.++....+..++.|+.
T Consensus 88 ~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 88 PP-TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165 (306)
T ss_dssp CS-SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTC
T ss_pred CC-ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcc
Confidence 11 1111122333346667777755 458889988763 33322111110111222223455666654
Q ss_pred --CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC-----CcEEEEEccCC
Q 019258 177 --GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS-----GTVFAWDLRWQ 241 (343)
Q Consensus 177 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d-----g~v~iwd~~~~ 241 (343)
-..+.+||+.+ .....+......+ .....+.+ +..+++.|+.+ ..+.+||+.+.
T Consensus 166 ~~~~~~~~yd~~~----~~W~~~~~~p~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 166 RVLNSCEVYDPAT----ETWTELCPMIEAR----KNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EECCCEEEEETTT----TEEEEECCCSSCC----BSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred cccceEEEeCCCC----CeEEECCCccchh----hcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588888866 2333332211111 11222333 23577777754 35888998763
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.15 E-value=6.8 Score=33.69 Aligned_cols=98 Identities=7% Similarity=0.019 Sum_probs=49.0
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCC-CCCCCCCccCC-CCCCeeEEEccCCCeEEEEcC-C---------CcEEEEEcc
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISL-PASLTPHSQWT-PPTRISSLSTSHQSLVAASTL-S---------GSLHVLSSA 100 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~-~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~-d---------g~v~v~~~~ 100 (343)
++.+++.|+.+.. .++.++... ...+..+..++ .+-.-.++...++.+++.|+. + ..+.+||..
T Consensus 19 ~~~iyv~GG~~~~----~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGT----AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTT----CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCC----eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 4677888887643 467777743 23343344444 222222333335666666665 2 467888887
Q ss_pred CceeeeeeccCCccccCeEEEEecCCEEEEEeCC
Q 019258 101 MQVLLSVDENSGFHVGPISGVDLTGSECVSVGED 134 (343)
Q Consensus 101 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~d 134 (343)
..+-..+......-.....++...+..++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 5432222211101111223333447777888765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=11 Score=35.53 Aligned_cols=156 Identities=6% Similarity=-0.089 Sum_probs=91.7
Q ss_pred CCeeEEEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
..+.+++|. ++.++++-...+.|+.++........+... ......-.+++|. ++.+++-+..+.|.+.+++... .
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~-~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~ 426 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA-QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-R 426 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC-CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-E
Confidence 457788887 344455555678888888763222222211 0111122344444 5566666678899999987652 2
Q ss_pred EEEEcCCCccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 149 KRVYDGNGLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
..+.. .......++++.| ...+.-+.. ...|...++.. .....+.... . ...+.|++++....++.
T Consensus 427 ~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG----~~~~~l~~~~----l--~~P~GlalD~~~~~LY~ 495 (619)
T 3s94_A 427 KILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG----SDRVVLVNTS----L--GWPNGLALDYDEGKIYW 495 (619)
T ss_dssp EEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS----CSCEEEECSS----C--SCEEEEEEETTTTEEEE
T ss_pred EEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC----CccEEEEeCC----C--CCCeeeEEcccCCEEEE
Confidence 33332 2223588999998 455554443 35555555532 3223332111 1 56889999987778888
Q ss_pred EEecCCcEEEEEccC
Q 019258 226 AGGSSGTVFAWDLRW 240 (343)
Q Consensus 226 sg~~dg~v~iwd~~~ 240 (343)
+-+..+.|..+|+..
T Consensus 496 aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 496 GDAKTDKIEVMNTDG 510 (619)
T ss_dssp EETTTTEEEEEESSS
T ss_pred EECCCCEEEEEecCC
Confidence 777788899999854
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=13 Score=35.15 Aligned_cols=191 Identities=11% Similarity=-0.048 Sum_probs=106.6
Q ss_pred cCeEEEEec--CCE-EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCC
Q 019258 116 GPISGVDLT--GSE-CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGS 190 (343)
Q Consensus 116 ~~v~~~~~~--~~~-~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~ 190 (343)
..+.+++++ ++. +++-...+.|..++.+... ...+.... ......+++.+ .+.+++-+..+.|.+.++..
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-~~~v~~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G--- 423 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-SQFVVTAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG--- 423 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc-cEEEEECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCC---
Confidence 356788887 444 4455567888888887642 33333222 11466777765 55566666688999988855
Q ss_pred CCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec-CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 191 GGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS-SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.....+.... . .....|+++|....++.+-.. .+.|...++.. .....+. ...-..-..|+
T Consensus 424 -~~~~~l~~~~----l--~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~----------~~~l~~P~Gla 485 (619)
T 3s94_A 424 -TMRKILISED----L--EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLV----------NTSLGWPNGLA 485 (619)
T ss_dssp -CSCEEEECTT----C--CSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE----------CSSCSCEEEEE
T ss_pred -CeEEEEEECC----C--CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEE----------eCCCCCCeeeE
Confidence 2223333111 1 458899999976667766533 46777777753 2222222 11234567899
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccc-ccccceeeecCCCCCeeEEc-cCCceEEEEe
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAE-PCAINSFDIDPQNPSDVICS-LEWESIAIVS 341 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~-~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~ 341 (343)
+++.... ..++=+..++|...+.... ...+... .....++++.. .+|..+ ...+.|+..+
T Consensus 486 lD~~~~~---------LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~---~~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 486 LDYDEGK---------IYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG---DYVYWTDWQRRSIERVH 548 (619)
T ss_dssp EETTTTE---------EEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET---TEEEEECTTSSCEEEEE
T ss_pred EcccCCE---------EEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC---CEEEEeecCCCeEEEEE
Confidence 9987663 3334455577888776433 2222222 12234566664 233333 2334555444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=87.99 E-value=2.7 Score=33.97 Aligned_cols=112 Identities=4% Similarity=-0.075 Sum_probs=62.3
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
..+..++|+|++. +.++ .+|.++-.+..+... ....+.... .-..+. ..-..+.|+|++. |+
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~--IG~~Gw-~~F~a~~fD~~G~-----------LY 102 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDN-DNWMGRAKK--IGNGGW-NQFQFLFFDPNGY-----------LY 102 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTT-CCHHHHCEE--EECSCG-GGCSEEEECTTSC-----------EE
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCc-ccccccccE--eccccc-ccceEEEECCCCC-----------EE
Confidence 3478999999775 5555 778777766543111 111100000 000011 1146888998875 45
Q ss_pred EEecCCeEEEEecC--CCcccccccc-------cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 289 FCSEDGILAVVEQG--EEPFELLAEP-------CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 289 s~s~dg~i~~~~~~--~~~~~~~~~~-------~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.. .||.|+-++.. ....++.... ..+..+.+.|+ ..|-+.. ++.++-...
T Consensus 103 av-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~--G~Lyav~-dg~lyr~~~ 161 (236)
T 1tl2_A 103 AV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN--GYLYAVH-GQQFYKALP 161 (236)
T ss_dssp EE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT--SCEEEEE-TTEEEEECC
T ss_pred Ee-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC--ceEEEEe-CCcEEecCC
Confidence 55 67999988863 3334444321 35788888884 4555555 667665443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.05 E-value=14 Score=31.90 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=43.2
Q ss_pred ceEEEEeCCCCE-EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCC---CCeEEEEEec-----
Q 019258 159 GFNCVKWASPTE-FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPS---RKHTCLAGGS----- 229 (343)
Q Consensus 159 ~v~~~~~~~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~~~sg~~----- 229 (343)
....++|.|... ++.+...+.|++++... ....++..+..... .+. +....++++|+ +..++++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~-~g~--~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWA-HGQ--GGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCC-STT--CSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCccccc-CCC--CCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 478899999444 66667789999988422 00111211110000 000 34789999996 4566665443
Q ss_pred --CCcEEEEEcc
Q 019258 230 --SGTVFAWDLR 239 (343)
Q Consensus 230 --dg~v~iwd~~ 239 (343)
...|..|++.
T Consensus 95 ~~~~~v~r~~~~ 106 (353)
T 2g8s_A 95 KAGTAVGYGRLS 106 (353)
T ss_dssp CEEEEEEEEEEC
T ss_pred CceeEEEEEEEC
Confidence 2357777664
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.78 E-value=16 Score=31.27 Aligned_cols=58 Identities=3% Similarity=-0.163 Sum_probs=26.7
Q ss_pred CCCeEEEEee-c---C-CCCCCceeeeeCCCCCCCCCCccCC-CCCCeeEEEccCCCeEEEEcCC
Q 019258 33 LSKLAVLAIY-D---T-DADSPSLETHSISLPASLTPHSQWT-PPTRISSLSTSHQSLVAASTLS 91 (343)
Q Consensus 33 ~~~~l~t~s~-D---~-~~~~~~l~~w~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~s~d 91 (343)
++.+++.|+. + . ....-.++.+|..... +..+..+. .+-.-.++...++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS-WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE-EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 4567777876 3 1 1111246677775433 22222222 1111111222356777777754
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=23 Score=34.53 Aligned_cols=167 Identities=7% Similarity=-0.020 Sum_probs=78.8
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc----
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT---- 232 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~---- 232 (343)
.|.++.++| .+.+.+++..+.|...+= .++....+.............+.+|+++|..+..+..+..+..
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~D----gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWDA----GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEET----TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEecC----CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 699999998 567777887776654432 2333333221110000011459999999865544444443211
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE-------EecCCCc
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV-------VEQGEEP 305 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~-------~~~~~~~ 305 (343)
-.||--.....-............. ......+..|+++|.++. .++.+...+.|+. |..-...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~-~~~~~~~~~iav~p~~~~---------~v~~g~~~~gl~~S~DgG~TW~~~~~~ 161 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGAN-DMGRNNGERLAVNPFNSN---------EVWMGTRTEGIWKSSDRAKTWTNVTSI 161 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTT-STTTTSCCCEEEETTEEE---------EEEEECSSSCEEEESSTTSSCEEETTS
T ss_pred cEEEEECCCCCcceeccCCcccCcc-CCCccceeEEEEcCCCCC---------EEEEEeccCCEEEECCCCcccCCCccC
Confidence 2334322222222222110000000 000113556888876654 5566654555543 2211110
Q ss_pred ccccccccccceeeecCCCCCeeEEccCC-ceEEE
Q 019258 306 FELLAEPCAINSFDIDPQNPSDVICSLEW-ESIAI 339 (343)
Q Consensus 306 ~~~~~~~~~i~s~~~~~~~~~~l~~~~~~-~~i~~ 339 (343)
..+......+..+.++|.++..|.++..+ ..|+.
T Consensus 162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 162 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp CCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred ccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 00001123467888888666666666544 55554
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=83.89 E-value=24 Score=31.77 Aligned_cols=230 Identities=15% Similarity=0.087 Sum_probs=130.4
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccC-ceeeeeecc-
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAM-QVLLSVDEN- 110 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~- 110 (343)
..+.+|.=. +. .|++++++.+ ..+++...+.+|.-.+|.+++.|+..+ +..|+-|++.. ..+..+...
T Consensus 76 ~~~iiALra--g~----~lQiFnle~K---~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 76 ASKVIALKA--GK----TLQIFNIEMK---SKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SSSCEEEEE--TT----EEEEEETTTT---EEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred CCcEEEEec--CC----eEEEEchHHh---hhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 445565543 21 4889999653 335566667788888898666666554 44799999973 333333321
Q ss_pred CCccccCeEEEEec--CCEEEEEe-------CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC----CCEEEEEeC-
Q 019258 111 SGFHVGPISGVDLT--GSECVSVG-------EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS----PTEFVTGGF- 176 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s-------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~t~~~- 176 (343)
...-...|.....+ .++++..| -.|.+.+|..+.+ ..+.+++|.. ....+.... ...|..+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEE-EEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeee-eeEEEecCCCCCCceEEEEEEec
Confidence 11112345555555 56655443 2467889998876 4566677754 344444332 223444443
Q ss_pred --CCcEEEEEccccCCCCCee-----E-EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 177 --GYGLQWWDLRRAGSGGPVL-----Q-FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 177 --d~~i~iwd~~~~~~~~~~~-----~-~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
.+++++-++.....+.+.. . +...+. ..+.--++..++.-. ++..-+.-|.+.+||+.++.......
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~----~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA----QNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS----TTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCccc----ccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeec
Confidence 3789999985410012211 1 111111 114566777777644 55567899999999999976554433
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.....|..-+.+.... -++.....|.+....-
T Consensus 298 -----------Is~~~iF~t~~~~~~~----------Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 298 -----------ISGETIFVTAPHEATA----------GIIGVNRKGQVLSVCV 329 (494)
T ss_dssp -----------CCSSCEEEEEEETTTT----------EEEEEETTCEEEEEEE
T ss_pred -----------ccCCceEEecccCCCC----------cEEEEccCceEEEEEE
Confidence 2345665555544333 3566667777655443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.22 E-value=21 Score=29.88 Aligned_cols=149 Identities=10% Similarity=-0.030 Sum_probs=70.5
Q ss_pred cCCCeEEEEcC-----C--C----cEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCC--------CcEEEE
Q 019258 80 SHQSLVAASTL-----S--G----SLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGED--------GRVNLV 140 (343)
Q Consensus 80 ~~~~~l~~~s~-----d--g----~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~d--------g~v~~w 140 (343)
.++.+++.|+. . . .+.+||....+-..+.... ........+.+.+..++.|+.+ ..+..+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP-SPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS-SCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC-cchhceeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 36777777773 1 1 2666776644322221111 1111112222336666666632 458888
Q ss_pred ECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeC------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEE
Q 019258 141 SVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSV 214 (343)
Q Consensus 141 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 214 (343)
|..+.+ -...........-.++....+..++.|+. -..+.+||+.+ .....+......+ ....++
T Consensus 123 d~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r----~~~~~~ 193 (315)
T 4asc_A 123 DRLSFK-WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK----FEWKELAPMQTAR----SLFGAT 193 (315)
T ss_dssp ETTTTE-EEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT----TEEEECCCCSSCC----BSCEEE
T ss_pred CCCCCc-EeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC----CeEEECCCCCCch----hceEEE
Confidence 988763 22221111110112222233556777776 24688888866 2222222111111 112233
Q ss_pred EEcCCCCeEEEEEecCC-----cEEEEEccCC
Q 019258 215 DIHPSRKHTCLAGGSSG-----TVFAWDLRWQ 241 (343)
Q Consensus 215 ~~~p~~~~~~~sg~~dg-----~v~iwd~~~~ 241 (343)
.+ +..+++.|+.++ .+.+||+.+.
T Consensus 194 ~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 194 VH---DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence 33 235777787655 4888888763
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=81.85 E-value=38 Score=32.55 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=122.3
Q ss_pred CCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEE
Q 019258 71 PTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 71 ~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
...|.++.-.....|-.|+.+| +..||-...... ..........|.++... ...+-.+..+| +..+|..+.+ ..
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~-f~ 95 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQH--FTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADR-YE 95 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEEC--SCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTE-EC
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEE--EccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCE-EE
Confidence 3468888776556677777887 555653321111 11111123468887666 56666667666 7899987753 22
Q ss_pred EEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 150 RVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
. ........|.++... .+.+-.++.+ .|..+|... ..+..+.... .......|.++....++. +. .|+.
T Consensus 96 ~-~~~~~~~~i~~i~~~-~g~lWigt~~-Gl~~~~~~~----~~~~~~~~~~--~~l~~~~i~~i~~d~~g~-lW-igt~ 164 (758)
T 3ott_A 96 Q-PETDFPTDVRTMALQ-GDTLWLGALN-GLYTYQLQS----RKLTSFDTRR--NGLPNNTIYSIIRTKDNQ-IY-VGTY 164 (758)
T ss_dssp C-CSCCCCSCEEEEEEE-TTEEEEEETT-EEEEEETTT----CCEEEECHHH--HCCSCSCEEEEEECTTCC-EE-EEET
T ss_pred C-cccCCCceEEEEEec-CCcEEEEcCC-cceeEeCCC----CeEEEeccCC--CCcCCCeEEEEEEcCCCC-EE-EEeC
Confidence 1 111111146666543 4456666665 677888755 3333341110 001114588888887765 33 3555
Q ss_pred CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccc
Q 019258 230 SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELL 309 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~ 309 (343)
+ -+..+|..+.... .+.. ... .......|.++...+++. .|..++. +.|..++.........
T Consensus 165 ~-Gl~~~~~~~~~~~-~~~~-~~~----~~~~~~~i~~i~~d~~~~----------~lWigt~-~Gl~~~~~~~~~~~~~ 226 (758)
T 3ott_A 165 N-GLCRYIPSNGKFE-GIPL-PVH----SSQSNLFVNSLLEDTTRQ----------CVWIGTE-GYLFQYFPSTGQIKQT 226 (758)
T ss_dssp T-EEEEEETTTTEEE-EECC-CCC----TTCSSCCEEEEEEETTTT----------EEEEEEE-EEEEEEETTTTEEEEE
T ss_pred C-CHhhCccCCCceE-EecC-CCc----cccccceeEEEEEECCCC----------EEEEEEC-CCCeEEcCCCCeEEec
Confidence 4 4778887653321 1110 000 001123478887776544 3565664 4577777654322211
Q ss_pred cc--ccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AE--PCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ...|.++..+. +|.. -.|++. .+++++
T Consensus 227 ~~l~~~~i~~i~~d~-~g~l-WigT~~-Gl~~~~ 257 (758)
T 3ott_A 227 EAFHNNSIKSLALDG-NGDL-LAGTDN-GLYVYH 257 (758)
T ss_dssp EEEEEEEEEEEEECT-TCCE-EEEETT-EEEEEC
T ss_pred cCCCCCeEEEEEEcC-CCCE-EEEeCC-ceeEEe
Confidence 11 24578887776 3344 444444 566654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.80 E-value=26 Score=30.57 Aligned_cols=199 Identities=8% Similarity=-0.065 Sum_probs=91.6
Q ss_pred CCEEEEEeCCCcEEEEECCC-CceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCC----cEEEEEccccCCCCCeeEE
Q 019258 125 GSECVSVGEDGRVNLVSVIG-GGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGY----GLQWWDLRRAGSGGPVLQF 197 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~----~i~iwd~~~~~~~~~~~~~ 197 (343)
...+..+...| +.+.+... +..............+.++.+.| .+.+..++..+ .|... .. .++....+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D--~G~tW~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DD--GGGNWTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SS--TTSCCEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CC--CCCCceEC
Confidence 34566777776 44444332 21122211111222699999987 66666676655 44433 22 13333322
Q ss_pred ecccC-CCCC------cccCeEEEEEcCCC-CeEEEEEecCCcEEEEEccCCceeeeeecCCCCccc---c------cCC
Q 019258 198 KGNFG-SQGK------ASGMIHSVDIHPSR-KHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAV---T------HSL 260 (343)
Q Consensus 198 ~~~~~-~~~~------~~~~i~~v~~~p~~-~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~------~~~ 260 (343)
..... .... ....|.++++.|.. +..+.+++..+.|...+ ................. . ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----C
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCC
Confidence 21100 0000 00247889998742 33345566666655543 11111111100000000 0 001
Q ss_pred ccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccccccc--------------ccccceeeecCCCCC
Q 019258 261 SESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFELLAE--------------PCAINSFDIDPQNPS 326 (343)
Q Consensus 261 h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~~~~~--------------~~~i~s~~~~~~~~~ 326 (343)
....+..|.++|.++. .++.+..++.|+..+...+..+.... ...+.++.+++.++.
T Consensus 175 ~~~~i~~i~~d~~~~~---------~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~ 245 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPK---------HLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD 245 (394)
T ss_dssp CCCEEEEEEECTTCTT---------CEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT
T ss_pred CCCceeEEEECCCCCC---------EEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCC
Confidence 2346889999986543 56666666666654322211111110 124788888886556
Q ss_pred eeEEccCCceEEEE
Q 019258 327 DVICSLEWESIAIV 340 (343)
Q Consensus 327 ~l~~~~~~~~i~~~ 340 (343)
.|..+.. +.|+..
T Consensus 246 ~l~vg~~-~gl~~s 258 (394)
T 3b7f_A 246 ILYQQNH-CGIYRM 258 (394)
T ss_dssp EEEEEET-TEEEEE
T ss_pred EEEEEcC-CeEEEe
Confidence 6766654 346554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.82 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.78 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.71 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.7 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.53 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.46 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.44 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.32 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.93 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.91 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.87 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.76 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.54 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.52 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.42 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.34 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.34 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.32 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.08 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.08 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.05 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.74 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.45 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.51 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.43 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.2 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.6 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.5 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 93.64 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.48 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.48 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 91.61 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 90.82 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 89.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 89.44 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 85.99 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 80.24 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-37 Score=273.45 Aligned_cols=284 Identities=17% Similarity=0.184 Sum_probs=229.7
Q ss_pred CccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC---ccCCCCCCeeEEEcc-CCCeE
Q 019258 10 PQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH---SQWTPPTRISSLSTS-HQSLV 85 (343)
Q Consensus 10 ~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~---~~~~~~~~v~~v~~~-~~~~l 85 (343)
.+++.+.|...|.+|+|+| ++++|+||+ |+ .|++|++........+ ....|.+.|.+++|+ ++++|
T Consensus 43 ~~~~~~~H~~~V~~v~fs~----~g~~latg~-dg-----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l 112 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISN----PTRHVYTGG-KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp EEEEEECCSSCCCEEEECS----SSSEEEEEC-BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE
T ss_pred eEEEECCCCCcEEEEEECC----CCCEEEEEE-CC-----EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE
Confidence 3677788999999999999 899999997 64 3789999654333222 234678899999999 88999
Q ss_pred EEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEE
Q 019258 86 AASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCV 163 (343)
Q Consensus 86 ~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~ 163 (343)
++++.||.|++|++.......... ...|...+..+.++ +..+++++.|+.|++||+.+++ +......+.. .+.++
T Consensus 113 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~-~v~~l 189 (337)
T d1gxra_ 113 IVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD-GASCI 189 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEE
T ss_pred EEeecccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-cccccccccc-ccccc
Confidence 999999999999987433222222 23588899999998 7899999999999999999985 5555555555 79999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+|++ +..+++++.|+.+++||++. ++.+..+. +. ..|.+++|+|++. .+++|+.||.|++||++...
T Consensus 190 ~~s~~~~~~~~~~~d~~v~i~d~~~---~~~~~~~~-~~-------~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 190 DISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQHD-FT-------SQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT---TEEEEEEE-CS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC
T ss_pred ccccccccccccccccccccccccc---ceeecccc-cc-------cceEEEEEccccc-ccceeccccccccccccccc
Confidence 9999 88999999999999999988 66665554 22 7799999999876 56789999999999998865
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeeec
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDID 321 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~ 321 (343)
.... ..|...|.+++|+|++. +|++++.||.|++|+.... ......+..+|.+++++
T Consensus 258 ~~~~------------~~~~~~i~~v~~s~~g~----------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 315 (337)
T d1gxra_ 258 KYQL------------HLHESCVLSLKFAYCGK----------WFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS 315 (337)
T ss_dssp EEEE------------CCCSSCEEEEEECTTSS----------EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred cccc------------cccccccceEEECCCCC----------EEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEe
Confidence 4322 45899999999999987 7999999999999997643 33334456789999999
Q ss_pred CCCCCeeEEccCCceEEEEe
Q 019258 322 PQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~ 341 (343)
| ++++|++|++|+.|+||+
T Consensus 316 ~-d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 316 V-DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp T-TSCEEEEEETTSCEEEEE
T ss_pred C-CCCEEEEEeCCCeEEEEE
Confidence 9 579999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-33 Score=241.72 Aligned_cols=277 Identities=14% Similarity=0.138 Sum_probs=226.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
.|...|.+|+|+| ++++|+|||.|+. |++|++.... ++.. ..|.+.|.+++|+ ++..++++..++.
T Consensus 15 GH~~~I~~l~~sp----~~~~l~s~s~Dg~-----i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~ 82 (317)
T d1vyhc1 15 GHRSPVTRVIFHP----VFSVMVSASEDAT-----IKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMT 82 (317)
T ss_dssp CCSSCEEEEEECS----SSSEEEEEESSSC-----EEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCeEEEEEcC----CCCEEEEEeCCCe-----EEEEECCCCC---EEEEEeCCCCcEEEEeeecccccccccccccc
Confidence 4889999999999 8899999999975 7799996532 2333 3578899999999 8889999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
+.+|+......... ...|...+.++.+. ++.+++++.|+.+++||++++. ....+..+.. .+.+++|++ +..
T Consensus 83 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 83 IKLWDFQGFECIRT---MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHRE-WVRMVRPNQDGTL 157 (317)
T ss_dssp CCEEETTSSCEEEC---CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSS-CEEEEEECTTSSE
T ss_pred cccccccccccccc---cccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCC-cceeeecccCCCE
Confidence 99999875443322 23588899999998 8899999999999999999985 4555555555 799999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC-------------------eEEEEEecCC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK-------------------HTCLAGGSSG 231 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-------------------~~~~sg~~dg 231 (343)
|++++.|+.|++|+++. ......+..+. ..+.+++++|+.. .++++|+.||
T Consensus 158 l~~~~~d~~v~~~~~~~---~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVAT---KECKAELREHR-------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227 (317)
T ss_dssp EEEEETTSCEEEEETTT---CCEEEEECCCS-------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEEeCCCeEEEEeecc---ceeeEEEecCC-------CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence 99999999999999988 67777776554 6788999887643 3578899999
Q ss_pred cEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-C-ccccc
Q 019258 232 TVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-E-PFELL 309 (343)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~-~~~~~ 309 (343)
.|++||++++..... + .+|...|.+++|+|++. +|++++.||.|++|+... + ...+.
T Consensus 228 ~i~~~~~~~~~~~~~-~----------~~~~~~v~~~~~~~~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~ 286 (317)
T d1vyhc1 228 TIKMWDVSTGMCLMT-L----------VGHDNWVRGVLFHSGGK----------FILSCADDKTLRVWDYKNKRCMKTLN 286 (317)
T ss_dssp EEEEEETTTTEEEEE-E----------ECCSSCEEEEEECSSSS----------CEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred EEEEEECCCCcEEEE-E----------eCCCCCEEEEEECCCCC----------EEEEEECCCeEEEEECCCCcEEEEEc
Confidence 999999998654333 3 46899999999999987 799999999999999753 2 33444
Q ss_pred ccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 310 AEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 310 ~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+..+|++++++| ++++|++|+.|+.|++|+
T Consensus 287 ~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 287 AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence 4567899999998 569999999999999995
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-33 Score=249.46 Aligned_cols=296 Identities=14% Similarity=0.092 Sum_probs=212.3
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC----------------CCCCccCCCCCCeeEEE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS----------------LTPHSQWTPPTRISSLS 78 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~----------------~~~~~~~~~~~~v~~v~ 78 (343)
+.|...|++|+|+| ++++|++|+ |+. |++|++.+... ........|...|++++
T Consensus 59 ~~H~~~V~~l~fs~----dg~~lasg~-d~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~ 128 (388)
T d1erja_ 59 LDHTSVVCCVKFSN----DGEYLATGC-NKT-----TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 128 (388)
T ss_dssp EECSSCCCEEEECT----TSSEEEEEC-BSC-----EEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred CCCCCcEEEEEECC----CCCEEEEEe-CCe-----EEEEEecccceEeeecccccccccccccccccccCCCCCEEEEE
Confidence 46889999999999 899999987 653 77999854211 11122235667899999
Q ss_pred cc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCC
Q 019258 79 TS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 79 ~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
|+ ++.+|++|+.||.|++|+....+.+... .+|...|.++.++ +..+++++.++.+++||..+.. .......+
T Consensus 129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~ 204 (388)
T d1erja_ 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE 204 (388)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECS
T ss_pred ECCCCCcceeccccccccccccccccccccc---ccccccccccccccccccccccccceeeeeeeccccc-cccccccc
Confidence 99 8899999999999999999866555433 3689999999998 7899999999999999999874 44444444
Q ss_pred CccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 156 GLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 156 ~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
. ...++.+.+ +..|++++.|+.|++||.+. +..+..+.........+.++|.+++|+|++. .+++|+.||.|
T Consensus 205 ~--~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i 278 (388)
T d1erja_ 205 D--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET---GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSV 278 (388)
T ss_dssp S--CEEEEEECSTTCCEEEEEETTSCEEEEETTT---CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred c--ccccccccCCCCCeEEEEcCCCeEEEeeccc---CccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcE
Confidence 4 356666666 67899999999999999988 5655554322211111237899999999876 56899999999
Q ss_pred EEEEccCCceeeeeecCCC-CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cccccc
Q 019258 234 FAWDLRWQQQSIVLSGVGT-GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLA 310 (343)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~ 310 (343)
++||++............. ........|...|.+++|+|++. +|++++.||.|++||.... ..++..
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----------~l~sg~~dg~i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE----------YILSGSKDRGVLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGC----------EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeccCCccccccccccccceeeecccccceEEEEEECCCCC----------EEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence 9999986543221110000 00011246888999999999987 7999999999999997532 234444
Q ss_pred cccccceeee------cCCCCCeeEEccCCceEEEEe
Q 019258 311 EPCAINSFDI------DPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 311 ~~~~i~s~~~------~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+..+|.++++ +| ++.+|++|++|+.|++|+
T Consensus 349 H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 349 HRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEe
Confidence 4566777654 55 568999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-32 Score=240.13 Aligned_cols=280 Identities=11% Similarity=0.080 Sum_probs=211.1
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLS 98 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~ 98 (343)
.+..++++| +++.|+.++.+ .+.+|++....... ....|...|++++|+ ++++|++|+.||+|++|+
T Consensus 19 ~~~~~a~~~----~g~~l~~~~~~------~v~i~~~~~~~~~~--~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd 86 (311)
T d1nr0a1 19 TAVVLGNTP----AGDKIQYCNGT------SVYTVPVGSLTDTE--IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86 (311)
T ss_dssp CCCCCEECT----TSSEEEEEETT------EEEEEETTCSSCCE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC----CCCEEEEEeCC------EEEEEECCCCceeE--EEcCCCCCEEEEEEeCCCCeEeccccCceEeeee
Confidence 466789999 88888887533 36799995532221 224688999999999 889999999999999999
Q ss_pred ccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC--CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC-EEE
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE--DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT-EFV 172 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~--dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~ 172 (343)
+.......... ...|.++|.+++|+ ++.+++++. +..+++|++++++ ....+..|.. .|.+++|+| +. .++
T Consensus 87 ~~~~~~~~~~~-~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~-~v~~v~~~~~~~~~l~ 163 (311)
T d1nr0a1 87 TTQTTHILKTT-IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQAR-AMNSVDFKPSRPFRII 163 (311)
T ss_dssp SSSTTCCEEEE-EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSS-CEEEEEECSSSSCEEE
T ss_pred eeccccccccc-cccccCcccccccccccccccccccccccccccccccccc-cccccccccc-ccccccccccceeeec
Confidence 98554332211 23588999999999 788888875 5669999999874 4444455655 799999999 44 588
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+|+.|+.|++||++. .+....+..+. .+|+++.++|++. ++++|+.||.|++||++.......+.. .
T Consensus 164 sgs~d~~i~i~d~~~---~~~~~~~~~~~-------~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~-~- 230 (311)
T d1nr0a1 164 SGSDDNTVAIFEGPP---FKFKSTFGEHT-------KFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFED-D- 230 (311)
T ss_dssp EEETTSCEEEEETTT---BEEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBC-T-
T ss_pred ccccccccccccccc---ccccccccccc-------ccccccccCcccc-ccccccccccccccccccccccccccc-c-
Confidence 899999999999988 66666666554 7899999999876 567899999999999987654333321 1
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cc-ccccc---ccccceeeecCCCCCe
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PF-ELLAE---PCAINSFDIDPQNPSD 327 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~-~~~~~---~~~i~s~~~~~~~~~~ 327 (343)
.....+|.+.|.+++|+|++. +|++++.||+|++|+.... .. ++... ...+.++.+++ +.
T Consensus 231 --~~~~~~h~~~V~~~~~s~~~~----------~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~---~~ 295 (311)
T d1nr0a1 231 --SLKNVAHSGSVFGLTWSPDGT----------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK---QA 295 (311)
T ss_dssp --TSSSCSSSSCEEEEEECTTSS----------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS---SC
T ss_pred --ccccccccccccccccCCCCC----------EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC---CE
Confidence 111256899999999999887 7999999999999997533 22 22222 12345666665 68
Q ss_pred eEEccCCceEEEEeC
Q 019258 328 VICSLEWESIAIVSR 342 (343)
Q Consensus 328 l~~~~~~~~i~~~~~ 342 (343)
+++++.+|.|++|+-
T Consensus 296 l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 296 LVSISANGFINFVNP 310 (311)
T ss_dssp EEEEETTCCEEEEET
T ss_pred EEEEECCCEEEEEeC
Confidence 888999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5e-32 Score=237.21 Aligned_cols=282 Identities=17% Similarity=0.148 Sum_probs=222.8
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.|...|.+|+|+| ++.+||||+.|+. |++|++...... .....|.+.|.+++|+ ++.++++++.|+.+
T Consensus 53 GH~~~I~~l~~s~----~~~~l~sgs~Dg~-----v~iWd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 53 GHLAKIYAMHWGT----DSRLLVSASQDGK-----LIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTTE-----EEEEETTTTEEE--EEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred CCCCCEEEEEECC----CCCEEEEEECCCc-----eeeeecccceeE--EEEecccccEEeeEeeccceeeeeeccccee
Confidence 4889999999999 8999999999975 779999653221 1223578899999999 88999999999999
Q ss_pred EEEEccCcee-eeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVL-LSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~-~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++|+...... .........|.......... +..+.....|.....++.......... ..... .+....+.+ ...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF-TGHTG-DVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSS-CEEEEEECTTSSEE
T ss_pred ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccc-cccce-eEeeecccccccee
Confidence 9999873221 11122223566666666666 888999999999999998886433333 33333 688888888 8889
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. ++++..+..|. .+|++++|+|++. ++++|+.||.|++||++.......+..
T Consensus 200 ~~~~~d~~v~i~d~~~---~~~~~~~~~h~-------~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~-- 266 (340)
T d1tbga_ 200 VSGACDASAKLWDVRE---GMCRQTFTGHE-------SDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSH-- 266 (340)
T ss_dssp EEEETTTEEEEEETTT---TEEEEEECCCS-------SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC--
T ss_pred EEeecCceEEEEECCC---CcEEEEEeCCC-------CCeEEEEECCCCC-EEEEEeCCCeEEEEeeccccccccccc--
Confidence 9999999999999998 77777787665 7899999999876 568999999999999998655544431
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC-C-cccccccccccceeeecCCCCCeeE
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE-E-PFELLAEPCAINSFDIDPQNPSDVI 329 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~-~-~~~~~~~~~~i~s~~~~~~~~~~l~ 329 (343)
..|...|..++|+|++. +|++++.||.|++|+... + ...+..+..+|++++|+| ++.+|+
T Consensus 267 -------~~~~~~i~~~~~s~~~~----------~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~ 328 (340)
T d1tbga_ 267 -------DNIICGITSVSFSKSGR----------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp -------TTCCSCEEEEEECSSSC----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEE
T ss_pred -------ccccCceEEEEECCCCC----------EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEE
Confidence 45678899999999987 799999999999999643 2 334444567899999999 678999
Q ss_pred EccCCceEEEEe
Q 019258 330 CSLEWESIAIVS 341 (343)
Q Consensus 330 ~~~~~~~i~~~~ 341 (343)
+|+.|+.|++|+
T Consensus 329 s~s~Dg~v~iWd 340 (340)
T d1tbga_ 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEccCCEEEEeC
Confidence 999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-31 Score=239.93 Aligned_cols=281 Identities=7% Similarity=0.003 Sum_probs=203.8
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEcc-CCCeEEEEcCCCcEEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTS-HQSLVAASTLSGSLHV 96 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v 96 (343)
++|++++|+| ++++||+|+.|+. |++|++.... ..+... -.|.++|.+++|+ ++++|++++.|+.|+|
T Consensus 8 ~pIt~~~~s~----dg~~la~~~~~~~-----i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~v 77 (371)
T d1k8kc_ 8 EPISCHAWNK----DRTQIAICPNNHE-----VHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 77 (371)
T ss_dssp SCCCEEEECT----TSSEEEEECSSSE-----EEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCeEEEEECC----CCCEEEEEeCCCE-----EEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEE
Confidence 6799999999 8999999998864 7799985432 222333 3689999999999 8899999999999999
Q ss_pred EEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCce---EEEEEcCCCccceEEEEeCC-CCE
Q 019258 97 LSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGE---FKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 97 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|++........... ..|...|+++.|+ ++.|++++.|+++++|+++.... .......+.. .|.+++|+| +..
T Consensus 78 Wd~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~ 155 (371)
T d1k8kc_ 78 WTLKGRTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVL 155 (371)
T ss_dssp EEEETTEEEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSE
T ss_pred Eeeccccccccccc-ccccccccccccccccccceeecccCcceeeeeeccccccccccccccccc-ccccccccccccc
Confidence 99985543333322 3588899999998 88999999999999999876432 2233334444 799999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCC---------------CeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGG---------------PVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
|++++.|++|++||+....... .+..... +...|++++|+|++. .+++++.||.|++
T Consensus 156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~g~-~l~s~~~d~~i~i 227 (371)
T d1k8kc_ 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-------SCGWVHGVCFSANGS-RVAWVSHDSTVCL 227 (371)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-------CSSCEEEEEECSSSS-EEEEEETTTEEEE
T ss_pred eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC-------ccCcEEEEEeecccc-cccccccCCcceE
Confidence 9999999999999986511100 1111122 227799999999986 5688999999999
Q ss_pred EEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE--EecCCCccccc----
Q 019258 236 WDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV--VEQGEEPFELL---- 309 (343)
Q Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~--~~~~~~~~~~~---- 309 (343)
||++.+.....+ ..|..+|.+++|+|++. .| +++.|+.+++ |+.........
T Consensus 228 wd~~~~~~~~~~-----------~~~~~~v~s~~fs~d~~----------~l-a~g~d~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
T d1k8kc_ 228 ADADKKMAVATL-----------ASETLPLLAVTFITESS----------LV-AAGHDCFPVLFTYDSAAGKLSFGGRLD 285 (371)
T ss_dssp EEGGGTTEEEEE-----------ECSSCCEEEEEEEETTE----------EE-EEETTSSCEEEEEETTTTEEEECCCCC
T ss_pred Eeeecccceeee-----------ecccccceeeeecCCCC----------EE-EEEcCCceEEEEeeCCCceEEEeeeec
Confidence 999886554443 45888999999999875 44 4555776554 44321110000
Q ss_pred -------------------------------------ccccccceeeecCCCC---CeeEEccCCceEEEEe
Q 019258 310 -------------------------------------AEPCAINSFDIDPQNP---SDVICSLEWESIAIVS 341 (343)
Q Consensus 310 -------------------------------------~~~~~i~s~~~~~~~~---~~l~~~~~~~~i~~~~ 341 (343)
.+...|+++.+.+... ..+++++.|+.|++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 0123578888865321 3477888999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-31 Score=232.12 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=189.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC--CC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL--SG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~--dg 92 (343)
.|...|.+++|+| ++++||+|+.|+. |++|++.............|.+.|.+++|+ ++.+|++++. +.
T Consensus 56 ~H~~~v~~~~~sp----~g~~latg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~ 126 (311)
T d1nr0a1 56 EHSHQTTVAKTSP----SGYYCASGDVHGN-----VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126 (311)
T ss_dssp CCSSCEEEEEECT----TSSEEEEEETTSE-----EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred CCCCCEEEEEEeC----CCCeEeccccCce-----EeeeeeeccccccccccccccCccccccccccccccccccccccc
Confidence 5889999999999 8999999999975 779999664332222234578899999999 7888888876 45
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-C
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-P 168 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 168 (343)
.+++|++...+.... ...|...|++++|+ ++ .+++|+.||.|++||+++.+ .......|.. .|.++.|+| +
T Consensus 127 ~~~v~~~~~~~~~~~---l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~-~i~~v~~~p~~ 201 (311)
T d1nr0a1 127 FGHVFLFDTGTSNGN---LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTK-FVHSVRYNPDG 201 (311)
T ss_dssp SEEEEETTTCCBCBC---CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSS-CEEEEEECTTS
T ss_pred ccccccccccccccc---ccccccccccccccccceeeecccccccccccccccccc-cccccccccc-cccccccCccc
Confidence 699999985544332 24688999999998 44 58899999999999999884 5666666665 899999999 8
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+.+++++.|+.|++||++. +.....+.........|.++|.+++|+|++. +|++|+.||+|++||+++++....+.
T Consensus 202 ~~l~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 202 SLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp SEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccccccc---ccccccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcEEEEEE
Confidence 8999999999999999988 6666555433221222337899999999986 56789999999999999865544443
Q ss_pred cCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 249 GVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 249 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
. + ..+...+.++.|+ +. .+++++.||.|++||.
T Consensus 278 ~-~-------~~~~~~~~~~~~~--~~----------~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 278 V-G-------TRIEDQQLGIIWT--KQ----------ALVSISANGFINFVNP 310 (311)
T ss_dssp C-C-------SSGGGCEEEEEEC--SS----------CEEEEETTCCEEEEET
T ss_pred C-C-------CCccceEEEEEec--CC----------EEEEEECCCEEEEEeC
Confidence 1 1 1223445555554 44 7899999999999986
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-31 Score=230.19 Aligned_cols=282 Identities=13% Similarity=0.065 Sum_probs=204.2
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
..|...|.+|+|+| ++++|+||+.|+. |++|++........+ .-.|.+.|++++|+.+..+++++.|+.+
T Consensus 9 ~GH~~~V~~l~~s~----dg~~l~s~s~Dg~-----v~vWd~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~~~~~~d~~v 78 (299)
T d1nr0a2 9 YGHNKAITALSSSA----DGKTLFSADAEGH-----INSWDISTGISNRVF-PDVHATMITGIKTTSKGDLFTVSWDDHL 78 (299)
T ss_dssp CCCSSCEEEEEECT----TSSEEEEEETTSC-----EEEEETTTCCEEECS-SCSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCCCCCcEEEEECC----CCCEEEEEcCCCe-----EEEEECCCCcEEEEE-cCCCCCcEEEEEeeccceeecccceeeE
Confidence 45889999999999 8999999999975 779999653222111 1257789999999944557778889999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 172 (343)
++|+...............|...+.++.++ ...+++++.++.+++|+... .......+ .+.+++|+| +..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~---~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISY---NSSCVALSNDKQFVA 152 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSS---CEEEEEECTTSCEEE
T ss_pred EEeccCCcccccccccccccccccccccccccccccccccccccccccccc---cccccccc---ccccccccccccccc
Confidence 999987432111111112366788899998 44455555667899999543 33332222 478899999 88899
Q ss_pred EEeCCCcEEEEEccccCCCCCee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
+++.|+.|++||++. ..... ....+. .+|.+++|+|++. .+++|+.||.|++||+++........
T Consensus 153 ~g~~dg~i~~~d~~~---~~~~~~~~~~~~-------~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~--- 218 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSG---ASVSEVKTIVHP-------AEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTN--- 218 (299)
T ss_dssp EEETTSEEEEEEEET---TEEEEEEEEECS-------SCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCC---
T ss_pred ccccccccccccccc---cccccccccccc-------ccccccccccccc-cccccccccccccccccccccccccc---
Confidence 999999999999987 33222 222333 7799999999876 46789999999999998754433222
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cc-cc--cc-ccccceeeecCCCCC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FE-LL--AE-PCAINSFDIDPQNPS 326 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~-~~--~~-~~~i~s~~~~~~~~~ 326 (343)
....|...|.+++|+|++. +|++++.||.|++|+..... .. .. .+ ..+++++.+.+ +.
T Consensus 219 -----~~~~h~~~v~~l~~s~~~~----------~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 281 (299)
T d1nr0a2 219 -----SWTFHTAKVACVSWSPDNV----------RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ET 281 (299)
T ss_dssp -----CCCCCSSCEEEEEECTTSS----------EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TT
T ss_pred -----ccccccccccccccccccc----------ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC--CC
Confidence 1156899999999999987 79999999999999865322 11 11 12 34677776654 47
Q ss_pred eeEEccCCceEEEEeCC
Q 019258 327 DVICSLEWESIAIVSRP 343 (343)
Q Consensus 327 ~l~~~~~~~~i~~~~~~ 343 (343)
+|++|++|+.|++|+-|
T Consensus 282 ~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 282 TIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEeCCCEEEEEecc
Confidence 99999999999999865
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-30 Score=229.29 Aligned_cols=238 Identities=15% Similarity=0.124 Sum_probs=192.6
Q ss_pred CCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 15 FPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 15 ~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
..|...|.+++|+| ++++|++|+.|+. |++|++.............|...|.++.|+ ++..+++++.|+.
T Consensus 94 ~~h~~~I~~v~~s~----dg~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 164 (337)
T d1gxra_ 94 LNRDNYIRSCKLLP----DGCTLIVGGEAST-----LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp SCTTSBEEEEEECT----TSSEEEEEESSSE-----EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cCCCCcEEEEEEcC----CCCEEEEeecccc-----cccccccccccccccccccccccccccccccccccccccccccc
Confidence 45778899999999 8899999999975 779998653322122234577889999999 8889999999999
Q ss_pred EEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCE
Q 019258 94 LHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTE 170 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 170 (343)
|++|++...+..... ..|...|.+++|+ +..+++++.|+.+++||+++++ ....+.... .|.+++|+| +..
T Consensus 165 i~~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~~~--~i~~l~~~~~~~~ 238 (337)
T d1gxra_ 165 IAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTS--QIFSLGYCPTGEW 238 (337)
T ss_dssp EEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSS--CEEEEEECTTSSE
T ss_pred ccccccccccccccc---cccccccccccccccccccccccccccccccccccce-eeccccccc--ceEEEEEcccccc
Confidence 999999866544333 3588999999998 8899999999999999999985 444444333 699999999 889
Q ss_pred EEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecC
Q 019258 171 FVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGV 250 (343)
Q Consensus 171 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~ 250 (343)
+++++.|+.+++||++. .+. .....+. ..|.+++|+|++. +|++|+.||.|++||+.+.+.....
T Consensus 239 l~~~~~d~~i~i~d~~~---~~~-~~~~~~~-------~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~--- 303 (337)
T d1gxra_ 239 LAVGMESSNVEVLHVNK---PDK-YQLHLHE-------SCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQS--- 303 (337)
T ss_dssp EEEEETTSCEEEEETTS---SCE-EEECCCS-------SCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred cceeccccccccccccc---ccc-ccccccc-------cccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEc---
Confidence 99999999999999988 443 3344343 7799999999986 5678999999999999886554443
Q ss_pred CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 251 GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 251 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.|...|.+++|+|++. +|+++|.||+|++|+.
T Consensus 304 ---------~~~~~v~~~~~s~d~~----------~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 ---------KESSSVLSCDISVDDK----------YIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---------ECSSCEEEEEECTTSC----------EEEEEETTSCEEEEEE
T ss_pred ---------cCCCCEEEEEEeCCCC----------EEEEEeCCCeEEEEEE
Confidence 3788999999999987 7999999999999984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-30 Score=225.63 Aligned_cols=284 Identities=11% Similarity=0.059 Sum_probs=200.7
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCC-CCeeEEEcc---CCCeEEEEcCCCcEE
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPP-TRISSLSTS---HQSLVAASTLSGSLH 95 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~-~~v~~v~~~---~~~~l~~~s~dg~v~ 95 (343)
.+.+++|+| +++.|+.++.+. +.++.|+..............|. ..|++++|+ ++.+|++|+.||+|+
T Consensus 19 ~~t~l~~~~----~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 19 FTTHLSYDP----TTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp CCCCCEEET----TTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CeEEEEECC----CCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 568899999 788888876442 23566776443333223334554 579999998 557899999999999
Q ss_pred EEEccCceee-----eeeccCCccccCeEEEEec--CCEEEEEe--CCCcEEEEECCCCceEEEEEcCCCccceEEEEeC
Q 019258 96 VLSSAMQVLL-----SVDENSGFHVGPISGVDLT--GSECVSVG--EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWA 166 (343)
Q Consensus 96 v~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~--~~~~~s~s--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (343)
||++...... ........|.++|.++.|+ +..+++++ .++.+.+|+.++++ ....+..|.. .+.+++|+
T Consensus 91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~-~v~~~~~~ 168 (325)
T d1pgua1 91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQ-RINACHLK 168 (325)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSS-CEEEEEEC
T ss_pred EeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-cceeeeeccc-cccccccc
Confidence 9998632211 1111123588899999998 77777765 47789999999885 5555566665 89999999
Q ss_pred C--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCcee
Q 019258 167 S--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQS 244 (343)
Q Consensus 167 ~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~ 244 (343)
+ ...+++++.|+.+++||.+. .+....+..+..+. ..|.+++|+|++..++++|+.||.|++||+++.+..
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~----~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~ 241 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHKQG----SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSCTT----CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred ccccceEEEeecccccccccccc---cccceecccccCCC----CccEEeeeccccceeccccccccceeeeeecccccc
Confidence 9 34578899999999999876 44444444443322 779999999987778899999999999999986544
Q ss_pred eeeecCCCCcccccCCccccEEEEEEe---ecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cc-ccccc--ccccce
Q 019258 245 IVLSGVGTGEAVTHSLSESEVWEVQYD---CHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PF-ELLAE--PCAINS 317 (343)
Q Consensus 245 ~~~~~~~~~~~~~~~~h~~~v~~v~~~---p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~-~~~~~--~~~i~s 317 (343)
.. + ..|..++..+.|+ |++. +|++++.||.|++|+.... .. .+..+ ...+..
T Consensus 242 ~~-l----------~~~~~~v~~~~~s~~~~dg~----------~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (325)
T d1pgua1 242 KY-I----------EDDQEPVQGGIFALSWLDSQ----------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300 (325)
T ss_dssp EE-C----------CBTTBCCCSCEEEEEESSSS----------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred cc-c----------cccccccccceeeeeccCCC----------EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeE
Confidence 33 3 3466666555555 3444 7999999999999997533 22 22112 233444
Q ss_pred eeecCCCCCeeEEccCCceEEEEe
Q 019258 318 FDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.+.+..+.+|+++++|+.|++|+
T Consensus 301 ~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 301 VGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEE
T ss_pred EEEEECCCCEEEEEECCCEEEEEE
Confidence 444332236899999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.9e-29 Score=224.16 Aligned_cols=247 Identities=15% Similarity=0.133 Sum_probs=180.2
Q ss_pred CCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceE
Q 019258 72 TRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEF 148 (343)
Q Consensus 72 ~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~ 148 (343)
.+|+|++|+ ++.+|++|+.||.|+||++...+..... ...+|.++|++++|+ +++|++++.|++|++||+.++...
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~-~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE-EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 579999999 8899999999999999999754432222 223699999999998 899999999999999999876422
Q ss_pred -EEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 149 -KRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 149 -~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
...+..+.. .+.+++|+| ++.|++++.|++|++|++.. ........... ..+...|.+++|+|++. ++++
T Consensus 87 ~~~~~~~~~~-~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~---~~~~~~~~~~~---~~~~~~v~~v~~~p~~~-~l~s 158 (371)
T d1k8kc_ 87 PTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYFEQ---ENDWWVCKHIK---KPIRSTVLSLDWHPNSV-LLAA 158 (371)
T ss_dssp EEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEEET---TTTEEEEEEEC---TTCCSCEEEEEECTTSS-EEEE
T ss_pred cccccccccc-cccccccccccccceeecccCcceeeeeec---ccccccccccc---ccccccccccccccccc-ceec
Confidence 222334444 799999999 88999999999999999987 44333222111 01116799999999876 5689
Q ss_pred EecCCcEEEEEccCCceeeeeecCC------C-CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEE
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVG------T-GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVV 299 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~------~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~ 299 (343)
|+.||+|++||++............ . ........|...|.+++|+|++. .|++++.||.|++|
T Consensus 159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----------~l~s~~~d~~i~iw 228 (371)
T d1k8kc_ 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS----------RVAWVSHDSTVCLA 228 (371)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS----------EEEEEETTTEEEEE
T ss_pred cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc----------cccccccCCcceEE
Confidence 9999999999986532110000000 0 00011256888999999999987 79999999999999
Q ss_pred ecCCC--cccccccccccceeeecCCCCCeeEEccCCceEEE
Q 019258 300 EQGEE--PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAI 339 (343)
Q Consensus 300 ~~~~~--~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~ 339 (343)
+.... ..++..+..+|.+++|+| ++.+|++|.|+ .+.+
T Consensus 229 d~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~d~-~~~~ 268 (371)
T d1k8kc_ 229 DADKKMAVATLASETLPLLAVTFIT-ESSLVAAGHDC-FPVL 268 (371)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEETTS-SCEE
T ss_pred eeecccceeeeecccccceeeeecC-CCCEEEEEcCC-ceEE
Confidence 97533 334444567899999998 55777777654 4444
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-28 Score=216.31 Aligned_cols=263 Identities=14% Similarity=0.134 Sum_probs=195.3
Q ss_pred eeeeeCCCCCC--CCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeec---------------cCC
Q 019258 51 LETHSISLPAS--LTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDE---------------NSG 112 (343)
Q Consensus 51 l~~w~~~~~~~--~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~---------------~~~ 112 (343)
+.+|+...... ..+...++|.+.|++|+|+ ++.+|++|+ |+.|+||++.+.+.+.... ...
T Consensus 40 ~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (388)
T d1erja_ 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118 (388)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------
T ss_pred EEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccccccc
Confidence 45787643322 2234556799999999999 888888886 8999999997554332211 122
Q ss_pred ccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccC
Q 019258 113 FHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 113 ~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
.|...|++++|+ +++|++|+.||.|++||...++ .......|.. .|.++.+++ ...+++++.++.+++||.+.
T Consensus 119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-- 194 (388)
T d1erja_ 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-- 194 (388)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT--
T ss_pred CCCCCEEEEEECCCCCcceecccccccccccccccc-cccccccccc-cccccccccccccccccccceeeeeeeccc--
Confidence 467789999998 8899999999999999999885 5555566665 799999999 88899999999999999987
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
.........+ ....++.++|....++++|+.||.|++||+++......+.... .....|.+.|.+++
T Consensus 195 -~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 195 -GQCSLTLSIE--------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN----ESGTGHKDSVYSVV 261 (388)
T ss_dssp -TEEEEEEECS--------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------CCCSSCEEEEE
T ss_pred -cccccccccc--------cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc----ccccCCCCCEEEEE
Confidence 4444444332 4466777777666788999999999999998765443332100 01146889999999
Q ss_pred EeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc--------------cccccccccceeeecCCCCCeeEEccCCc
Q 019258 270 YDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF--------------ELLAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~--------------~~~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
|+|++. .|++++.||.|++|+...... ....+...|.+++++| ++++|++|+.++
T Consensus 262 ~s~~~~----------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg 330 (388)
T d1erja_ 262 FTRDGQ----------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDR 330 (388)
T ss_dssp ECTTSS----------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTS
T ss_pred ECCCCC----------EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCC
Confidence 999887 799999999999998642211 1111235789999998 579999999999
Q ss_pred eEEEEeC
Q 019258 336 SIAIVSR 342 (343)
Q Consensus 336 ~i~~~~~ 342 (343)
.|++|+.
T Consensus 331 ~i~vwd~ 337 (388)
T d1erja_ 331 GVLFWDK 337 (388)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-28 Score=212.17 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=196.5
Q ss_pred CCccccCCcccce-eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEccCCCeEE
Q 019258 9 PPQVHRFPQSKYI-DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTSHQSLVA 86 (343)
Q Consensus 9 ~~~~~~~~~~~~i-~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~ 86 (343)
|++..--.|...| ++++ + ++++|+||+.|+. |++||+... +++.. ..|.+.|++++|+++++|+
T Consensus 3 p~~~tL~GH~~~vitc~~--~----~~~~l~tgs~Dg~-----i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~~~l~ 68 (355)
T d1nexb2 3 PQRTTLRGHMTSVITCLQ--F----EDNYVITGADDKM-----IRVYDSINK---KFLLQLSGHDGGVWALKYAHGGILV 68 (355)
T ss_dssp CEEEEEECCSSSCEEEEE--E----ETTEEEEEETTTE-----EEEEETTTT---EEEEEEECCSSCEEEEEEETTTEEE
T ss_pred CCcEEECCcCCCcEEEEE--E----CCCEEEEEeCCCe-----EEEEECCCC---cEEEEEECCCCCEEEEEEcCCCEEE
Confidence 3333333587775 5554 4 4679999999975 779999653 23333 3588999999999778999
Q ss_pred EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE------------
Q 019258 87 ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY------------ 152 (343)
Q Consensus 87 ~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~------------ 152 (343)
+++.||.|++|+............. .+...+....+. +..+++++.|+.|++||+.+........
T Consensus 69 s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d1nexb2 69 SGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147 (355)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred EEecccccccccccccccccccccc-cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence 9999999999999865544333221 233333444444 6789999999999999997643221110
Q ss_pred ----------cCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCC
Q 019258 153 ----------DGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRK 221 (343)
Q Consensus 153 ----------~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 221 (343)
..+.. .+.. +.+ ++.++++..|+.|++||++. .+.+.....+. ..+.++.++|.+.
T Consensus 148 ~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~~~~~d~~i~~~d~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~ 214 (355)
T d1nexb2 148 EENPYFVGVLRGHMA-SVRT--VSGHGNIVVSGSYDNTLIVWDVAQ---MKCLYILSGHT-------DRIYSTIYDHERK 214 (355)
T ss_dssp TTCTTEEEEEECCSS-CEEE--EEEETTEEEEEETTSCEEEEETTT---TEEEEEECCCS-------SCEEEEEEETTTT
T ss_pred ccccceeeeeeeccc-cccc--cccccceeeeecccceeeeeeccc---ccceeeeeccc-------cccccccccccce
Confidence 01111 1222 223 67899999999999999988 66666665444 6789999999876
Q ss_pred eEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 222 HTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 222 ~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
.+++++.||.|++||++++... ... .+|...|.+++|++ . .|++++.||.|++|+.
T Consensus 215 -~~~~~~~d~~i~i~d~~~~~~~-~~~----------~~h~~~v~~~~~~~--~----------~l~~~~~dg~i~iwd~ 270 (355)
T d1nexb2 215 -RCISASMDTTIRIWDLENGELM-YTL----------QGHTALVGLLRLSD--K----------FLVSAAADGSIRGWDA 270 (355)
T ss_dssp -EEEEEETTSCEEEEETTTCCEE-EEE----------CCCSSCCCEEEECS--S----------EEEEECTTSEEEEEET
T ss_pred -eeecccccceEEeeeccccccc-ccc----------cccccccccccccc--c----------eeeeeecccccccccc
Confidence 4578999999999999985543 334 57899999999974 3 7999999999999998
Q ss_pred CCCcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 302 GEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 302 ~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
......+..+...+.++.+.+.++.+|++|+ ++.|++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd 309 (355)
T d1nexb2 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 309 (355)
T ss_dssp TTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEE
T ss_pred cccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEE
Confidence 7665555555556666655433556666665 67999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.7e-29 Score=216.18 Aligned_cols=294 Identities=12% Similarity=0.069 Sum_probs=191.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCC-CCCCccCCCCCCeeEEEcc--CCCeEEEEcCCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPAS-LTPHSQWTPPTRISSLSTS--HQSLVAASTLSG 92 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~-~~~~~~~~~~~~v~~v~~~--~~~~l~~~s~dg 92 (343)
.|.+.|++|+|+| ++++||+||.|+. |++|++..... ..+.....|.++|.+++|+ .+.+|++|+.||
T Consensus 9 ~h~d~I~~l~fsp----~~~~L~s~s~Dg~-----v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 9 APKDYISDIKIIP----SKSLLLITSWDGS-----LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CCSSCEEEEEEEG----GGTEEEEEETTSE-----EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCCCCEEEEEEeC----CCCEEEEEECCCe-----EEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence 5778999999999 8999999999975 77999854322 2334455799999999998 455899999999
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEe-c-CCEEEEEeCCCcEEEEECCCCce---EEEEEcCC-CccceEEEEeC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDL-T-GSECVSVGEDGRVNLVSVIGGGE---FKRVYDGN-GLVGFNCVKWA 166 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~s~s~dg~v~~wd~~~~~~---~~~~~~~~-~~~~v~~~~~~ 166 (343)
.|++|++........... .+........+ . ...+++++.|+++++||+++... .......+ .........+.
T Consensus 80 ~v~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN--NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp CEEEECSSSSSSEEECBS--CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred ceeeeecccccccccccc--cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence 999999985443333322 12222222222 2 88999999999999999865321 11111111 11123344445
Q ss_pred C-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceee
Q 019258 167 S-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 167 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~ 245 (343)
+ ...+++++.|+.|++||++. .............. ..+.+..+.|.....+++++.||.+.+|++.......
T Consensus 158 ~~~~~~~~~~~d~~i~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~ 230 (342)
T d1yfqa_ 158 TNSSRLIVGMNNSQVQWFRLPL---CEDDNGTIEESGLK----YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSC---CTTCCCEEEECSCS----SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred ccCCceeeecCCCcEEEEeccc---Ccccceeeeecccc----cceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence 5 77899999999999999987 33332222111111 4577777777767778899999999999986532211
Q ss_pred eeecC----CCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccccccceeee
Q 019258 246 VLSGV----GTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSFDI 320 (343)
Q Consensus 246 ~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~ 320 (343)
..... ..........|...|++|+|+|++. +|++|+.||.|++||.... ....+....+...+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~----------~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~ 300 (342)
T d1yfqa_ 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK----------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC----------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred eccccceeeeeeeccCCCcccccceeEEecCCcc----------EEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEE
Confidence 10000 0000111246778899999999988 7999999999999997543 2222222223333444
Q ss_pred cCCCCCeeEEccCCceEE
Q 019258 321 DPQNPSDVICSLEWESIA 338 (343)
Q Consensus 321 ~~~~~~~l~~~~~~~~i~ 338 (343)
++ +++.++.|+.++.+.
T Consensus 301 s~-~~~~l~~a~sdd~~~ 317 (342)
T d1yfqa_ 301 AC-SDNILCLATSDDTFK 317 (342)
T ss_dssp EE-CSSEEEEEEECTHHH
T ss_pred Ee-CCCEEEEEEcCCcEE
Confidence 44 236777766555433
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4e-27 Score=202.84 Aligned_cols=236 Identities=15% Similarity=0.164 Sum_probs=192.3
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLH 95 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~ 95 (343)
|...|.+++|+| ++.+++++..+.. +..|+....... .....+...+.++.|+ +++.+++++.|+.++
T Consensus 58 h~~~V~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (317)
T d1vyhc1 58 HTDSVQDISFDH----SGKLLASCSADMT-----IKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126 (317)
T ss_dssp CSSCEEEEEECT----TSSEEEEEETTSC-----CCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCcEEEEeeec----ccccccccccccc-----cccccccccccc--cccccccccceeeeccCCCceEEeeccCccee
Confidence 678899999999 8889999887754 447776432221 2334677889999999 889999999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC------
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS------ 167 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~------ 167 (343)
+|++...+.+.... .|...+.++.++ +..+++++.|+.|++|++.++. ....+..+.. .+.+++|.+
T Consensus 127 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~ 201 (317)
T d1vyhc1 127 MWEVQTGYCVKTFT---GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRH-VVECISWAPESSYSS 201 (317)
T ss_dssp EEETTTCCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSS-CEEEEEECCSCGGGG
T ss_pred EeecccceeeeEEc---cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-eeEEEecCCC-CceEEEEeeccccce
Confidence 99998665544432 588899999998 8899999999999999999885 4445555554 688888765
Q ss_pred ---------------CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCc
Q 019258 168 ---------------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGT 232 (343)
Q Consensus 168 ---------------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~ 232 (343)
...+++++.|+.|++||++. ++++.++..+. .+|.+++++|++. +|++|+.||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~~~~~~~~~~-------~~v~~~~~~~~~~-~l~s~~~dg~ 270 (317)
T d1vyhc1 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHD-------NWVRGVLFHSGGK-FILSCADDKT 270 (317)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTT---TEEEEEEECCS-------SCEEEEEECSSSS-CEEEEETTTE
T ss_pred eeccccceeeeeccCCceeEeccCCCEEEEEECCC---CcEEEEEeCCC-------CCEEEEEECCCCC-EEEEEECCCe
Confidence 24688999999999999998 78888888765 7899999999986 4678999999
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
|++||+++.+.. ..+ .+|.+.|++++|+|++. +|++||.||+|++||
T Consensus 271 i~iwd~~~~~~~-~~~----------~~h~~~V~~~~~s~~~~----------~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 271 LRVWDYKNKRCM-KTL----------NAHEHFVTSLDFHKTAP----------YVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCTTSCCC-EEE----------ECCSSCEEEEEECSSSS----------CEEEEETTSEEEEEC
T ss_pred EEEEECCCCcEE-EEE----------cCCCCCEEEEEEcCCCC----------EEEEEeCCCeEEEeC
Confidence 999999885543 434 57999999999999987 799999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-26 Score=201.23 Aligned_cols=275 Identities=13% Similarity=0.139 Sum_probs=196.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.|.+.|.+ ++++ ++++|||||.|+. |++|++.... ++.. ..|.+.|.+++|+ +++|++++.|+.+
T Consensus 14 GH~~~V~s-~~~~----~g~~l~sgs~Dg~-----i~vWd~~~~~---~~~~~~~h~~~V~~v~~~-~~~l~s~s~D~~~ 79 (342)
T d2ovrb2 14 GHDDHVIT-CLQF----CGNRIVSGSDDNT-----LKVWSAVTGK---CLRTLVGHTGGVWSSQMR-DNIIISGSTDRTL 79 (342)
T ss_dssp CSTTSCEE-EEEE----ETTEEEEEETTSC-----EEEEETTTCC---EEEECCCCSSCEEEEEEE-TTEEEEEETTSCE
T ss_pred CcCCceEE-EEEE----CCCEEEEEeCCCe-----EEEEECCCCC---EEEEEeCCCCCEEEEEeC-CCccccceecccc
Confidence 68888754 3556 5779999999975 7799996532 2333 3588999999998 5699999999999
Q ss_pred EEEEccCceeeeeecc-----------------------------CC--------ccccCeEEEEecCCEEEEEeCCCcE
Q 019258 95 HVLSSAMQVLLSVDEN-----------------------------SG--------FHVGPISGVDLTGSECVSVGEDGRV 137 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~-----------------------------~~--------~h~~~v~~~~~~~~~~~s~s~dg~v 137 (343)
++|+............ .. .+.............++.++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence 9999863322111100 00 0001111111226678889999999
Q ss_pred EEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 138 NLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 138 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
++||..... ....+..+.. .+..+.+. +..+++++.|+.|++||++. .+++..+..+. ..+.+++++
T Consensus 160 ~~~d~~~~~-~~~~~~~~~~-~~~~~~~~-~~~l~s~~~dg~i~~~d~~~---~~~~~~~~~~~-------~~v~~~~~~ 226 (342)
T d2ovrb2 160 KVWDPETET-CLHTLQGHTN-RVYSLQFD-GIHVVSGSLDTSIRVWDVET---GNCIHTLTGHQ-------SLTSGMELK 226 (342)
T ss_dssp EEEEGGGTE-EEEEECCCSS-CEEEEEEC-SSEEEEEETTSCEEEEETTT---CCEEEEECCCC-------SCEEEEEEE
T ss_pred EEeecccce-eeEEEcCccc-ccccccCC-CCEEEEEeCCCeEEEeeccc---ceeeeEecccc-------cceeEEecC
Confidence 999998874 5555555554 55555554 57899999999999999988 77777777665 778999887
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
++ ++++|+.||.|++||++..+....+.. +..|...+.++.+++ . ++++|+.||+|+
T Consensus 227 ~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~----------~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 227 DN---ILVSGNADSTVKIWDIKTGQCLQTLQG--------PNKHQSAVTCLQFNK--N----------FVITSSDDGTVK 283 (342)
T ss_dssp TT---EEEEEETTSCEEEEETTTCCEEEEECS--------TTSCSSCEEEEEECS--S----------EEEEEETTSEEE
T ss_pred CC---EEEEEcCCCEEEEEecccccccccccc--------cceeeeceeecccCC--C----------eeEEEcCCCEEE
Confidence 63 678999999999999988655544431 145777888888764 3 789999999999
Q ss_pred EEecCCC--cccccc-----cccccceeeecCCCCCeeEEccCCc----eEEEEe
Q 019258 298 VVEQGEE--PFELLA-----EPCAINSFDIDPQNPSDVICSLEWE----SIAIVS 341 (343)
Q Consensus 298 ~~~~~~~--~~~~~~-----~~~~i~s~~~~~~~~~~l~~~~~~~----~i~~~~ 341 (343)
+|+.... ..++.. +..+|++++++| ++.+|++|+++| .|++|+
T Consensus 284 iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEE
T ss_pred EEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEe
Confidence 9997532 222221 235799999998 568999998887 477775
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.7e-27 Score=204.49 Aligned_cols=267 Identities=15% Similarity=0.109 Sum_probs=194.3
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|.+.|.+|+|+| |+|||.|+. +++|++... ...|...|.++.++++..+++++.|++++
T Consensus 11 gH~~~I~~l~~s~--------l~sgs~Dg~-----v~~Wd~~~~-------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~ 70 (287)
T d1pgua2 11 GHNKGITALTVNP--------LISGSYDGR-----IMEWSSSSM-------HQDHSNLIVSLDNSKAQEYSSISWDDTLK 70 (287)
T ss_dssp CCSSCEEEEETTT--------TEEEETTSC-----EEETTTTEE-------ECCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred CCCCceEEEEECc--------EEEEeCCCe-----EEEEECCCC-------CCCCCCCEEEEEecCCCeEEEEeeccccc
Confidence 5899999999998 899999976 779998432 23688899999999777899999999999
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTG 174 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~ 174 (343)
+|++...+ ....+..+.+. +..++..+.++.+.+|+..++. ....+.... .+.++... +..++++
T Consensus 71 ~w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~~~~v~ 136 (287)
T d1pgua2 71 VNGITKHE----------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD-IIKSVRLNS--PGSAVSLS-QNYVAVG 136 (287)
T ss_dssp ETTEEEEE----------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC-EEEEEECSS--CEEEEEEC-SSEEEEE
T ss_pred cccccccc----------cccceeeeeeccCCceEEEeecccceeeecccee-eeeeccccc--eeeeeecc-Ccceeee
Confidence 99876221 12245666666 6666667777789999998875 444444333 35555544 4456666
Q ss_pred eCC-CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCC
Q 019258 175 GFG-YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTG 253 (343)
Q Consensus 175 ~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~ 253 (343)
+.+ +.+++|++.. ......+.... . +++.+++|+|++. +|++|+.||.|++||+++........
T Consensus 137 ~~~~~~v~~~~~~~---~~~~~~~~~~~--~----~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~----- 201 (287)
T d1pgua2 137 LEEGNTIQVFKLSD---LEVSFDLKTPL--R----AKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRW----- 201 (287)
T ss_dssp ETTTSCEEEEETTE---EEEEEECSSCC--S----SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCS-----
T ss_pred ccccceeeeeeccc---cceeeeeeecc--C----CceeEEEeccCcc-ccccccccccccceeecccccccccc-----
Confidence 654 5799999876 33333333221 1 6799999999986 56899999999999998866554444
Q ss_pred cccccCCccccEEEEEEeecCCCC---cCCCCCccceEEEecCCeEEEEecCC--Cccccc-ccccccceeeecCCCCCe
Q 019258 254 EAVTHSLSESEVWEVQYDCHTKSS---NISSSRVLPAMFCSEDGILAVVEQGE--EPFELL-AEPCAINSFDIDPQNPSD 327 (343)
Q Consensus 254 ~~~~~~~h~~~v~~v~~~p~~~~~---~~~~~~~~~l~s~s~dg~i~~~~~~~--~~~~~~-~~~~~i~s~~~~~~~~~~ 327 (343)
..|...|.+++|+|..... ...+. +++++|.||+|++|+... +....+ .+...|+++.++|+ ..
T Consensus 202 -----~~h~~~v~~~~~~p~~~~~~~~~~~~~---~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~--~~ 271 (287)
T d1pgua2 202 -----AFRTSKINAISWKPAEKGANEEEIEED---LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--ST 271 (287)
T ss_dssp -----CCCSSCEEEEEECCCC------CCSCC---EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET--TE
T ss_pred -----cccccccceeeecccccccccccCCCC---eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC--CE
Confidence 6799999999999865311 11111 689999999999999643 233333 34578999999983 56
Q ss_pred eEEccCCceEEEEe
Q 019258 328 VICSLEWESIAIVS 341 (343)
Q Consensus 328 l~~~~~~~~i~~~~ 341 (343)
++++++|+.|++|+
T Consensus 272 l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 272 LVSSGADACIKRWN 285 (287)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEECCCeEEEEE
Confidence 88888899999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.1e-27 Score=208.18 Aligned_cols=246 Identities=14% Similarity=0.053 Sum_probs=177.0
Q ss_pred ccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCC------ccCCCCCCeeEEEcc-CCCeEEEEcC
Q 019258 18 SKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPH------SQWTPPTRISSLSTS-HQSLVAASTL 90 (343)
Q Consensus 18 ~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~------~~~~~~~~v~~v~~~-~~~~l~~~s~ 90 (343)
...|.+|+|+|. .++.+|++|+.|++ |++|++......... ....+.++|.+++|+ ++.+|++++.
T Consensus 63 ~~~v~~v~fsP~--~~g~~lasgs~Dg~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 135 (325)
T d1pgua1 63 SSVVTTVKFSPI--KGSQYLCSGDESGK-----VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135 (325)
T ss_dssp TSCEEEEEECSS--TTCCEEEEEETTSE-----EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEEEEeeC--CCCCEEEEEeCCCC-----EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence 568999999993 26689999999975 779998432211111 123477899999999 7788777664
Q ss_pred --CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEc--CCCccceEEE
Q 019258 91 --SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYD--GNGLVGFNCV 163 (343)
Q Consensus 91 --dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~~ 163 (343)
++.+++|+....+.+... ..|...|+++.|+ +. .+++++.|+.+++||....+....... .+.. .|.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~v~~v 211 (325)
T d1pgua1 136 GRDNFGVFISWDSGNSLGEV---SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS-FVRDV 211 (325)
T ss_dssp CSSCSEEEEETTTCCEEEEC---CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC-CEEEE
T ss_pred cccceEEEEeecccccceee---eecccccccccccccccceEEEeecccccccccccccccceecccccCCCC-ccEEe
Confidence 678999998865544333 3699999999998 43 578899999999999988643333322 2233 69999
Q ss_pred EeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 164 KWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 164 ~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
+|+| +..+++++.|+.|++||+++ ++.+..+..+... ....+.++.+. ++. +|++|+.||.|++||++++
T Consensus 212 ~~~pd~~~~l~s~~~d~~i~iwd~~~---~~~~~~l~~~~~~---v~~~~~s~~~~-dg~-~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 212 EFSPDSGEFVITVGSDRKISCFDGKS---GEFLKYIEDDQEP---VQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTS 283 (325)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTT---CCEEEECCBTTBC---CCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTT
T ss_pred eeccccceeccccccccceeeeeecc---ccccccccccccc---cccceeeeecc-CCC-EEEEEeCCCeEEEEECCCC
Confidence 9998 57889999999999999998 7777777765421 11345666664 444 5689999999999999986
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
+....+.. ..|...+..+++.+.... .|+++|.||+|++|+
T Consensus 284 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 284 KCVQKWTL---------DKQQLGNQQVGVVATGNG---------RIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEEEEC---------CTTCGGGCEEEEEEEETT---------EEEEEETTSCEEEEE
T ss_pred CEEEEEEe---------cCCcccCeEEEEEECCCC---------EEEEEECCCEEEEEE
Confidence 54444331 234444445555544443 789999999999998
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3e-27 Score=207.08 Aligned_cols=279 Identities=10% Similarity=0.120 Sum_probs=196.9
Q ss_pred cccC-CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 12 VHRF-PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 12 ~~~~-~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+..+ .|...|.+|+|+| +.+|++|+.|+. +++|++.............+........+. +...+++++
T Consensus 46 ~~~l~~H~~~V~~l~~s~-----~~~l~s~s~D~~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (355)
T d1nexb2 46 LLQLSGHDGGVWALKYAH-----GGILVSGSTDRT-----VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115 (355)
T ss_dssp EEEEECCSSCEEEEEEET-----TTEEEEEETTCC-----EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEcC-----CCEEEEEecccc-----cccccccccccccccccccccccccccccccccceeeeec
Confidence 3343 3788999999998 358999999975 779998553222111111222233444455 677899999
Q ss_pred CCCcEEEEEccCceeeee--------------------eccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 019258 90 LSGSLHVLSSAMQVLLSV--------------------DENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFK 149 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~--------------------~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~ 149 (343)
.|+.|++|++........ ......|...+.....+++.++++..|+.+++||+++++ ..
T Consensus 116 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~ 194 (355)
T d1nexb2 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CL 194 (355)
T ss_dssp TTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EE
T ss_pred CCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc-ce
Confidence 999999999864322100 001112445666666668999999999999999999885 44
Q ss_pred EEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe
Q 019258 150 RVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG 228 (343)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~ 228 (343)
.....+.. .+.++.+++ ...+++++.|+.|++||++. +..+..+.+|. ..|.+++++| ..+++|+
T Consensus 195 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~h~-------~~v~~~~~~~---~~l~~~~ 260 (355)
T d1nexb2 195 YILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN---GELMYTLQGHT-------ALVGLLRLSD---KFLVSAA 260 (355)
T ss_dssp EEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT---CCEEEEECCCS-------SCCCEEEECS---SEEEEEC
T ss_pred eeeecccc-ccccccccccceeeecccccceEEeeeccc---ccccccccccc-------cccccccccc---ceeeeee
Confidence 45454544 688999999 88999999999999999998 77777787665 7799999986 3578999
Q ss_pred cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--cc
Q 019258 229 SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PF 306 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~ 306 (343)
.||.|++||+++...... .|...+..+.+.+.+. .+++++.||.|++|+.... ..
T Consensus 261 ~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~----------~~l~~g~d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 261 ADGSIRGWDANDYSRKFS-------------YHHTNLSAITTFYVSD----------NILVSGSENQFNIYNLRSGKLVH 317 (355)
T ss_dssp TTSEEEEEETTTCCEEEE-------------EECTTCCCCCEEEECS----------SEEEEEETTEEEEEETTTCCBCC
T ss_pred cccccccccccccceecc-------------cccCCceEEEEEcCCC----------CEEEEEeCCEEEEEECCCCCEEE
Confidence 999999999987544322 3556666666554444 4566667999999996532 22
Q ss_pred c-ccccccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 307 E-LLAEPCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 307 ~-~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
. +..+..+|.+++++|+ ..++++++|+.+++|
T Consensus 318 ~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 318 ANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLE 350 (355)
T ss_dssp SCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEE
T ss_pred EEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEE
Confidence 2 3334578999999983 566777888876655
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-26 Score=194.78 Aligned_cols=267 Identities=14% Similarity=0.156 Sum_probs=195.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC-CCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW-TPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
.+...|.+++ + ++++|||||.|+. |++|++.. .+++..+ .|.+.|++++|. +++|++|+.||.|
T Consensus 13 ~~~~~V~c~~--~----d~~~l~sgs~Dg~-----i~vWd~~~---~~~~~~l~~H~~~V~~v~~~-~~~l~s~s~D~~i 77 (293)
T d1p22a2 13 ETSKGVYCLQ--Y----DDQKIVSGLRDNT-----IKIWDKNT---LECKRILTGHTGSVLCLQYD-ERVIITGSSDSTV 77 (293)
T ss_dssp SSCCCEEEEE--C----CSSEEEEEESSSC-----EEEEESSS---CCEEEEECCCSSCEEEEECC-SSEEEEEETTSCE
T ss_pred CCCCCEEEEE--E----cCCEEEEEeCCCe-----EEEEECCC---CcEEEEEecCCCCEeeeecc-cceeecccccccc
Confidence 4556777764 5 5789999999975 77999955 2333333 588999999995 7899999999999
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCce--EEEEEcCCCccceEEEEeCCCCEEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGE--FKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
++|++.......... .+.............++++..++.+.+||..+... .......+.. .+.++.+. ...++
T Consensus 78 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~~ 152 (293)
T d1p22a2 78 RVWDVNTGEMLNTLI---HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD-DKYIV 152 (293)
T ss_dssp EEEESSSCCEEEEEC---CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEEEEE-TTEEE
T ss_pred ccccccccccccccc---ccccccccccccccceeecccccceeEeecccccccccccccccccc-ccccceec-ccccc
Confidence 999998654443332 12233344444488899999999999999977432 2333344444 67776655 45688
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGT 252 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~ 252 (343)
+++.|+.|++||++. .+++..+.++. ..+..+.+++. .+++|+.||+|++||+++.... ...
T Consensus 153 ~~s~d~~i~~~d~~~---~~~~~~~~~~~-------~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~-~~~---- 214 (293)
T d1p22a2 153 SASGDRTIKVWNTST---CEFVRTLNGHK-------RGIACLQYRDR---LVVSGSSDNTIRLWDIECGACL-RVL---- 214 (293)
T ss_dssp EEETTSEEEEEETTT---CCEEEEEECCS-------SCEEEEEEETT---EEEEEETTSCEEEEETTTCCEE-EEE----
T ss_pred cccCCCceeeecCCC---CcEEEEEcccc-------cccccccCCCC---eEEEecCCCEEEEEecccceee-eee----
Confidence 899999999999998 77777777655 66888887652 5789999999999999985443 333
Q ss_pred CcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-----------cccccccccccceeeec
Q 019258 253 GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-----------PFELLAEPCAINSFDID 321 (343)
Q Consensus 253 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-----------~~~~~~~~~~i~s~~~~ 321 (343)
..|...+..+ .++.. .|++++.||.|++|+.... ...+..+..+|++++++
T Consensus 215 ------~~~~~~v~~~--~~~~~----------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d 276 (293)
T d1p22a2 215 ------EGHEELVRCI--RFDNK----------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276 (293)
T ss_dssp ------CCCSSCEEEE--ECCSS----------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred ------cccceeeeec--cccce----------EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc
Confidence 4567777654 44444 7999999999999984211 11222345689999998
Q ss_pred CCCCCeeEEccCCceEEEEe
Q 019258 322 PQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 322 ~~~~~~l~~~~~~~~i~~~~ 341 (343)
+ .+|++|+.|+.|++|+
T Consensus 277 ~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 E---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp S---SCEEECCSSSEEEEEC
T ss_pred C---CEEEEEecCCEEEEeC
Confidence 6 7899999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.9e-27 Score=203.25 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=179.7
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCC
Q 019258 68 WTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGG 145 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~ 145 (343)
.+|.+.|++++|+ ++.+|++|+.||.|++||+.+++..... ...|...|+++.|+ ...+++++.|+.+++|+....
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~ 86 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 86 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS--SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cCCCCCcEEEEEeeccceeecccceeeEEEeccCCc
Confidence 4799999999999 8899999999999999999866555433 23689999999999 556888899999999998653
Q ss_pred ce--EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeE
Q 019258 146 GE--FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHT 223 (343)
Q Consensus 146 ~~--~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 223 (343)
.. .......+.. .+.++++++...+++++.++.+++|+... ....... ..+.+++++|++. +
T Consensus 87 ~~~~~~~~~~~~~~-~~~~~~~s~~g~~~~~~~~~~i~~~~~~~------~~~~~~~--------~~~~~~~~s~~~~-~ 150 (299)
T d1nr0a2 87 GVDSSKAVANKLSS-QPLGLAVSADGDIAVAACYKHIAIYSHGK------LTEVPIS--------YNSSCVALSNDKQ-F 150 (299)
T ss_dssp SSCTTSCCEEECSS-CEEEEEECTTSSCEEEEESSEEEEEETTE------EEEEECS--------SCEEEEEECTTSC-E
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccc------ccccccc--------ccccccccccccc-c
Confidence 11 1111112232 58899999955566667788999999644 1222211 4588999999875 5
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
+++|+.||.|++||+++........ ..|...|.+++|+|++. +|++++.||.|++|+...
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~----------~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEVKT----------IVHPAEITSVAFSNNGA----------FLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEE----------EECSSCEEEEEECTTSS----------EEEEEETTSCEEEEEGGG
T ss_pred ccccccccccccccccccccccccc----------ccccccccccccccccc----------cccccccccccccccccc
Confidence 6899999999999998754433333 45889999999999887 799999999999998643
Q ss_pred Cc-----ccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 304 EP-----FELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 304 ~~-----~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.. ..+..+..+|++++++| ++.+|++|+.|+.|++|+
T Consensus 211 ~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 211 NFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred cccccccccccccccccccccccc-cccceEEEcCCCEEEEEE
Confidence 22 12222356899999999 579999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.7e-25 Score=195.26 Aligned_cols=240 Identities=15% Similarity=0.109 Sum_probs=183.7
Q ss_pred cccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCC-CCCcc-CCCCCCeeEEEccCCCeEEEEcCCCcE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASL-TPHSQ-WTPPTRISSLSTSHQSLVAASTLSGSL 94 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~-~~~~~-~~~~~~v~~v~~~~~~~l~~~s~dg~v 94 (343)
|...|.+++|+| ++.++++|+.|+. +.+|+....... ..... ..|..............+.....+...
T Consensus 96 ~~~~v~~v~~~~----~~~~l~~~~~d~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (340)
T d1tbga_ 96 RSSWVMTCAYAP----SGNYVACGGLDNI-----CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166 (340)
T ss_dssp SCSCEEEEEECT----TSSEEEEEETTCC-----EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEE
T ss_pred ccccEEeeEeec----cceeeeeecccce-----eecccccccccccccceecccccccccccccccccccccccccccc
Confidence 678899999999 8999999999965 668887443221 11222 234444444444467778888889998
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
..+............ .+...+....+. ...+++++.|+.|++||+++++ +...+..|.. .|.+++|+| +..|
T Consensus 167 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~-~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 167 ALWDIETGQQTTTFT---GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHES-DINAICFFPNGNAF 241 (340)
T ss_dssp EEEETTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSS-CEEEEEECTTSSEE
T ss_pred ccccccccccccccc---ccceeEeeeccccccceeEEeecCceEEEEECCCCc-EEEEEeCCCC-CeEEEEECCCCCEE
Confidence 888876443332222 355677777776 8889999999999999999984 6666666666 899999999 8899
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++++.|+.|++||++. ...+..+.... +...+.+++|+|++. ++++|+.||.|++||+++.+.. ..+
T Consensus 242 ~s~s~d~~i~~~~~~~---~~~~~~~~~~~-----~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~-~~~--- 308 (340)
T d1tbga_ 242 ATGSDDATCRLFDLRA---DQELMTYSHDN-----IICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRA-GVL--- 308 (340)
T ss_dssp EEEETTSCEEEEETTT---TEEEEEECCTT-----CCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEE-EEE---
T ss_pred EEEeCCCeEEEEeecc---ccccccccccc-----ccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEE-EEE---
Confidence 9999999999999988 55555443221 126699999999876 5678999999999999885544 444
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
.+|.++|++|+|+|++. +|++||.||.|++|+
T Consensus 309 -------~~H~~~V~~l~~s~d~~----------~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 309 -------AGHDNRVSCLGVTDDGM----------AVATGSWDSFLKIWN 340 (340)
T ss_dssp -------CCCSSCEEEEEECTTSS----------CEEEEETTSCEEEEC
T ss_pred -------cCCCCCEEEEEEeCCCC----------EEEEEccCCEEEEeC
Confidence 57999999999999987 799999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.3e-26 Score=203.44 Aligned_cols=261 Identities=14% Similarity=0.066 Sum_probs=172.6
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCC----CCccCCCCCCeeEE------Ecc--CCC
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLT----PHSQWTPPTRISSL------STS--HQS 83 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~----~~~~~~~~~~v~~v------~~~--~~~ 83 (343)
.|...|.+|++.+ ++++|+|.|+. +++|+........ ......+...+..+ ... +..
T Consensus 12 ~H~~~I~~v~~~~------~~l~S~S~D~~-----iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 12 AHDADIFSVSACN------SFTVSCSGDGY-----LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CSSSCEEEEEECS------SEEEEEETTSE-----EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred cccCccEEEEEeC------CEEEEEECCCe-----EEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence 5888999999765 47999999975 7799974322111 11122333333222 222 334
Q ss_pred eEEEEcCCCcEEEEEccCcee---eee----eccCCccccCeEEEEec-------CCEEEEEeCCCcEEEEECCCCc---
Q 019258 84 LVAASTLSGSLHVLSSAMQVL---LSV----DENSGFHVGPISGVDLT-------GSECVSVGEDGRVNLVSVIGGG--- 146 (343)
Q Consensus 84 ~l~~~s~dg~v~v~~~~~~~~---~~~----~~~~~~h~~~v~~~~~~-------~~~~~s~s~dg~v~~wd~~~~~--- 146 (343)
++++++.||.|++|++..... ... ......+...+..+.+. +..+++++.||++++|++....
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 678899999999999862211 100 01112355677777775 3578999999999999974210
Q ss_pred --------e---EEEEEc--CCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEE
Q 019258 147 --------E---FKRVYD--GNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHS 213 (343)
Q Consensus 147 --------~---~~~~~~--~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 213 (343)
. ...... ......+.+++|+|...|++|+.|++|++||++. ++++..+..... ...|..+|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~---~~~~~~~~~~~~-l~~h~~~V~~ 236 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST---LRPLYNFESQHS-MINNSNSIRS 236 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT---TEEEEEEECCC----CCCCCEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecc---cccccccccccc-cccccceEEE
Confidence 0 111111 1112258899999977999999999999999988 666665543221 1112378999
Q ss_pred EEEcCCCCeEEEEEecCCc---EEEEEccCCceeeeeecCC--CCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 214 VDIHPSRKHTCLAGGSSGT---VFAWDLRWQQQSIVLSGVG--TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 214 v~~~p~~~~~~~sg~~dg~---v~iwd~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
++|+|++. +|++|+.|++ |++||++.++....+.... ........+|.+.|++|+|+|++. +|+
T Consensus 237 l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~----------~l~ 305 (393)
T d1sq9a_ 237 VKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE----------TLC 305 (393)
T ss_dssp EEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS----------EEE
T ss_pred cccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC----------eeE
Confidence 99999986 5688998874 9999998865544332110 011111247999999999999987 899
Q ss_pred EEecCCeEEEEecC
Q 019258 289 FCSEDGILAVVEQG 302 (343)
Q Consensus 289 s~s~dg~i~~~~~~ 302 (343)
|+|.||+|++||..
T Consensus 306 S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVK 319 (393)
T ss_dssp EEETTSEEEEEETT
T ss_pred EECCCCEEEEEECC
Confidence 99999999999964
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-24 Score=185.28 Aligned_cols=230 Identities=12% Similarity=0.095 Sum_probs=172.2
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLH 95 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~ 95 (343)
.|...|.++++++ +..++++++|+. +++|++... .....+..+.+..+..++....++.+.
T Consensus 44 ~h~~~V~~~~~~~-----~~~~~s~s~D~~-----v~~w~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (287)
T d1pgua2 44 DHSNLIVSLDNSK-----AQEYSSISWDDT-----LKVNGITKH---------EFGSQPKVASANNDGFTAVLTNDDDLL 104 (287)
T ss_dssp CCCSCEEEEECCS-----TTCCEEEETTTE-----EEETTEEEE---------ECSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred CCCCCEEEEEecC-----CCeEEEEeeccc-----ccccccccc---------ccccceeeeeeccCCceEEEeecccce
Confidence 5677899999988 345789999964 779988431 233456778888555666666777888
Q ss_pred EEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCC-cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEE
Q 019258 96 VLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDG-RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVT 173 (343)
Q Consensus 96 v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg-~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t 173 (343)
+|+....+.+.... +..++.++..++..++.++.|+ .+++|++.+..........+.. .+++++|+| +.+|++
T Consensus 105 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~ 179 (287)
T d1pgua2 105 ILQSFTGDIIKSVR----LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA-KPSYISISPSETYIAA 179 (287)
T ss_dssp EEETTTCCEEEEEE----CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS-CEEEEEECTTSSEEEE
T ss_pred eeeccceeeeeecc----ccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC-ceeEEEeccCcccccc
Confidence 99887655544432 3346677777777777777664 7999999765333333333333 799999999 888999
Q ss_pred EeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccCeEEEEEcCCC---------CeEEEEEecCCcEEEEEccCCce
Q 019258 174 GGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGMIHSVDIHPSR---------KHTCLAGGSSGTVFAWDLRWQQQ 243 (343)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~---------~~~~~sg~~dg~v~iwd~~~~~~ 243 (343)
++.|+.|++||+.. ...... +..|. .+|.+++|+|.+ ..++++|+.|++|++||++++..
T Consensus 180 g~~dg~i~i~d~~~---~~~~~~~~~~h~-------~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~ 249 (287)
T d1pgua2 180 GDVMGKILLYDLQS---REVKTSRWAFRT-------SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249 (287)
T ss_dssp EETTSCEEEEETTT---TEEEECCSCCCS-------SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred ccccccccceeecc---cccccccccccc-------cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence 99999999999977 443322 33333 779999999854 34688999999999999988666
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
..... .+|...|++++|+|++ .++++|.||+|++|+
T Consensus 250 ~~~~~----------~~h~~~V~~v~~~~~~-----------~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 250 IIKAL----------NAHKDGVNNLLWETPS-----------TLVSSGADACIKRWN 285 (287)
T ss_dssp CEEET----------TSSTTCEEEEEEEETT-----------EEEEEETTSCEEEEE
T ss_pred EEEEe----------CCCCCCeEEEEECCCC-----------EEEEEECCCeEEEEE
Confidence 66655 6899999999999864 589999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.1e-23 Score=181.36 Aligned_cols=245 Identities=14% Similarity=0.151 Sum_probs=177.1
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC-------------------------------
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP------------------------------- 64 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~------------------------------- 64 (343)
.|...|.+++|+| + +|++|+.|+. +++|+.........
T Consensus 55 ~h~~~V~~v~~~~----~--~l~s~s~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 123 (342)
T d2ovrb2 55 GHTGGVWSSQMRD----N--IIISGSTDRT-----LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123 (342)
T ss_dssp CCSSCEEEEEEET----T--EEEEEETTSC-----EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEeCC----C--ccccceeccc-----ccccccccccceecccccceeEeeeecccccccccccceeEEEee
Confidence 3778899999988 2 8999999975 56887743210000
Q ss_pred ------CccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEE
Q 019258 65 ------HSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVN 138 (343)
Q Consensus 65 ------~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~ 138 (343)
...+................+++++.|+.|++|+......+... ..|...+..+.+++..+++++.||.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~dg~i~ 200 (342)
T d2ovrb2 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQFDGIHVVSGSLDTSIR 200 (342)
T ss_dssp SSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred cccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEE---cCcccccccccCCCCEEEEEeCCCeEE
Confidence 00000001111111115567888999999999998855544333 257788888888899999999999999
Q ss_pred EEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 139 LVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 139 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
+||+++++ ....+..|.. .+.++++++ +.+++++.|+.|++||+.. .+....+..+..+. ..+.++.++|
T Consensus 201 ~~d~~~~~-~~~~~~~~~~-~v~~~~~~~-~~l~s~s~d~~i~iwd~~~---~~~~~~~~~~~~~~----~~~~~~~~~~ 270 (342)
T d2ovrb2 201 VWDVETGN-CIHTLTGHQS-LTSGMELKD-NILVSGNADSTVKIWDIKT---GQCLQTLQGPNKHQ----SAVTCLQFNK 270 (342)
T ss_dssp EEETTTCC-EEEEECCCCS-CEEEEEEET-TEEEEEETTSCEEEEETTT---CCEEEEECSTTSCS----SCEEEEEECS
T ss_pred Eeecccce-eeeEeccccc-ceeEEecCC-CEEEEEcCCCEEEEEeccc---ccccccccccceee----eceeecccCC
Confidence 99999985 5555566665 788888765 6899999999999999988 66666666554323 6688888876
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCe---
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGI--- 295 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~--- 295 (343)
.++++|+.||+|++||+++++....+.... ..+|.+.|++++|+|++. .+++++.||+
T Consensus 271 ---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~------~~~~~~~v~~v~~s~~~~----------~la~g~~dGt~~~ 331 (342)
T d2ovrb2 271 ---NFVITSSDDGTVKLWDLKTGEFIRNLVTLE------SGGSGGVVWRIRASNTKL----------VCAVGSRNGTEET 331 (342)
T ss_dssp ---SEEEEEETTSEEEEEETTTCCEEEEEEECT------TGGGTCEEEEEEECSSEE----------EEEEECSSSSSCC
T ss_pred ---CeeEEEcCCCEEEEEECCCCCEEEEEeccc------CCCCCCCEEEEEECCCCC----------EEEEEeCCCCCee
Confidence 367899999999999999876655443111 135788999999999876 7899999985
Q ss_pred -EEEEecCC
Q 019258 296 -LAVVEQGE 303 (343)
Q Consensus 296 -i~~~~~~~ 303 (343)
|++||-+.
T Consensus 332 ~l~~~Df~~ 340 (342)
T d2ovrb2 332 KLLVLDFDV 340 (342)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 89998764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.7e-24 Score=185.80 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=171.7
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec---CCEEEEEeCCCcEEEEECCC
Q 019258 69 TPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT---GSECVSVGEDGRVNLVSVIG 144 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~dg~v~~wd~~~ 144 (343)
.|...|++|+|+ ++++|++|+.||+|+||++..............|.++|.+++|+ +..+++|+.||+|++|++..
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 577889999999 88999999999999999997433222122122589999999997 45789999999999999988
Q ss_pred CceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCe
Q 019258 145 GGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
..........+.. ......+.+ ...+++++.++++++||++. ........ ........ .......+.+.+.
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 161 (342)
T d1yfqa_ 89 SPSFQALTNNEAN-LGICRICKYGDDKLIAASWDGLIEVIDPRN---YGDGVIAVKNLNSNNTK--VKNKIFTMDTNSS- 161 (342)
T ss_dssp SSSEEECBSCCCC-SCEEEEEEETTTEEEEEETTSEEEEECHHH---HTTBCEEEEESCSSSSS--SCCCEEEEEECSS-
T ss_pred ccccccccccccc-cccccccccccccccccccccccceeeccc---cccceeeeccccccccc--ceeeeeeeeccCC-
Confidence 7544433333332 333333444 88899999999999999987 33333222 11111111 2344455555544
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
.+++++.||.|++||++.......... ...+...+....+.+.... .+++++.||.+.+|...
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~~~~s~dg~~~v~~~~ 224 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIE--------ESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFD 224 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEE--------ECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeee--------ecccccceeeeEeecCCCC---------EEEeecCCCeEEEEEec
Confidence 567899999999999987544322210 0234556677777776665 78999999999998754
Q ss_pred CCcccc-----------------cccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 EEPFEL-----------------LAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~~~~~~-----------------~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
...... ..+..++++++++| ++.+|++|++|+.|++|+-
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEET
T ss_pred CCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEEC
Confidence 321110 01124688999999 5699999999999999973
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.7e-24 Score=193.09 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=168.0
Q ss_pred CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCcee---eeeeccCCccccCeEEEEe------c---CCEEEEEeCCC
Q 019258 68 WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVL---LSVDENSGFHVGPISGVDL------T---GSECVSVGEDG 135 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~---~~~~~~~~~h~~~v~~~~~------~---~~~~~s~s~dg 135 (343)
-.|.+.|.+++++ +++|++++.|++|+||+....+. .........|...+..+.. + ...+++++.||
T Consensus 11 ~~H~~~I~~v~~~-~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 11 KAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp SCSSSCEEEEEEC-SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred CcccCccEEEEEe-CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 3789999999987 67999999999999999753211 0000011124444333322 2 34678999999
Q ss_pred cEEEEECCCCce---EE-EEEcCC----CccceEEEEeCC------CCEEEEEeCCCcEEEEEccccCC--------CCC
Q 019258 136 RVNLVSVIGGGE---FK-RVYDGN----GLVGFNCVKWAS------PTEFVTGGFGYGLQWWDLRRAGS--------GGP 193 (343)
Q Consensus 136 ~v~~wd~~~~~~---~~-~~~~~~----~~~~v~~~~~~~------~~~l~t~~~d~~i~iwd~~~~~~--------~~~ 193 (343)
.|++|++..... .. ...... ....+..++|.+ ...+++++.|+++++||+..... ...
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 999999754211 11 111110 111366677654 35789999999999999854000 011
Q ss_pred eeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeec
Q 019258 194 VLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCH 273 (343)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 273 (343)
...+.........+...+.+++|+|++ ++++|+.||+|++||+++.+....+.... ...+|..+|++|+|+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~-----~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQH-----SMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC--------CCCCCEEEEEECSS
T ss_pred ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccccccc-----ccccccceEEEcccccc
Confidence 111111111111222668999999986 67899999999999998865443332111 11568999999999999
Q ss_pred CCCCcCCCCCccceEEEecCCe---EEEEecCCC--cccc-------------cccccccceeeecCCCCCeeEEccCCc
Q 019258 274 TKSSNISSSRVLPAMFCSEDGI---LAVVEQGEE--PFEL-------------LAEPCAINSFDIDPQNPSDVICSLEWE 335 (343)
Q Consensus 274 ~~~~~~~~~~~~~l~s~s~dg~---i~~~~~~~~--~~~~-------------~~~~~~i~s~~~~~~~~~~l~~~~~~~ 335 (343)
+. +|++||.|++ |++|+.... ...+ ..+...|++++|+| ++++|++|+.|+
T Consensus 243 g~----------~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~ 311 (393)
T d1sq9a_ 243 GS----------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDG 311 (393)
T ss_dssp TT----------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTS
T ss_pred cc----------eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCC
Confidence 88 7999999975 788986432 1111 12346799999999 679999999999
Q ss_pred eEEEEeC
Q 019258 336 SIAIVSR 342 (343)
Q Consensus 336 ~i~~~~~ 342 (343)
.|++|+.
T Consensus 312 ~v~vWd~ 318 (393)
T d1sq9a_ 312 KLRFWDV 318 (393)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.3e-22 Score=172.28 Aligned_cols=231 Identities=10% Similarity=0.070 Sum_probs=169.9
Q ss_pred CCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 019258 68 WTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 68 ~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~ 147 (343)
-.|...|+|++|. +++|++|+.||+|+|||+.+.+.+... .+|.++|++++|+++.|++++.|+.|++|++..+.
T Consensus 12 ~~~~~~V~c~~~d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l---~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~- 86 (293)
T d1p22a2 12 SETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE- 86 (293)
T ss_dssp CSSCCCEEEEECC-SSEEEEEESSSCEEEEESSSCCEEEEE---CCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC-
T ss_pred CCCCCCEEEEEEc-CCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEeeeecccceeeccccccccccccccccc-
Confidence 3566789999884 889999999999999999876655444 36999999999999999999999999999999875
Q ss_pred EEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG 227 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg 227 (343)
.......... ...........++++..++.+++||.+. ............+. ..+..+.+.+. .++++
T Consensus 87 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~v~~~~~~~~---~~~~~ 154 (293)
T d1p22a2 87 MLNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMAS---PTDITLRRVLVGHR----AAVNVVDFDDK---YIVSA 154 (293)
T ss_dssp EEEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSS---SSCCEEEEEECCCS----SCEEEEEEETT---EEEEE
T ss_pred cccccccccc--ccccccccccceeecccccceeEeeccc---cccccccccccccc----cccccceeccc---ccccc
Confidence 3333333332 2222333477899999999999999987 33332222211112 66888887763 45688
Q ss_pred ecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-
Q 019258 228 GSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF- 306 (343)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~- 306 (343)
+.|+.|++||+++.+....+ .+|...+..+.+++ . .+++++.||.|++|+......
T Consensus 155 s~d~~i~~~d~~~~~~~~~~-----------~~~~~~v~~~~~~~--~----------~l~~~~~dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTL-----------NGHKRGIACLQYRD--R----------LVVSGSSDNTIRLWDIECGACL 211 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEE-----------ECCSSCEEEEEEET--T----------EEEEEETTSCEEEEETTTCCEE
T ss_pred cCCCceeeecCCCCcEEEEE-----------cccccccccccCCC--C----------eEEEecCCCEEEEEecccceee
Confidence 99999999999986544333 45677888887763 3 799999999999999754322
Q ss_pred -cccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 -ELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 -~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
........+..+..++ .+|++|+.++.|++|+
T Consensus 212 ~~~~~~~~~v~~~~~~~---~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 212 RVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWD 244 (293)
T ss_dssp EEECCCSSCEEEEECCS---SEEEEEETTSCEEEEE
T ss_pred eeecccceeeeeccccc---eEEEEEcCCCEEEEEE
Confidence 2222234566655544 8999999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2.1e-21 Score=170.55 Aligned_cols=286 Identities=8% Similarity=-0.031 Sum_probs=190.5
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCC--cEEEEE
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSG--SLHVLS 98 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg--~v~v~~ 98 (343)
..-.|+| .+++++|+++.. .+++|++.+.. ...+.|.+.|.+++|+ ++++|++++.+. .|++|+
T Consensus 6 ~~~~fSP---~dG~~~a~~~~g------~v~v~d~~~~~----~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d 72 (360)
T d1k32a3 6 FAEDFSP---LDGDLIAFVSRG------QAFIQDVSGTY----VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72 (360)
T ss_dssp GEEEEEE---CGGGCEEEEETT------EEEEECTTSSB----EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEE
T ss_pred hcccccC---CCCCEEEEEECC------eEEEEECCCCc----EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEE
Confidence 3457888 689999998754 47899995532 2345789999999999 788887766543 789999
Q ss_pred ccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe
Q 019258 99 SAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 99 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~ 175 (343)
....+...+ ..|.+.|.++.|+ ++++++++.++.+++|++.+++ .......+.. .+.+++|+| +..|+.+.
T Consensus 73 ~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 73 YRTGKAEKF----EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREA-MITDFTISDNSRFIAYGF 146 (360)
T ss_dssp TTTCCEEEC----CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSS-CCCCEEECTTSCEEEEEE
T ss_pred CCCCcEEEe----eCCCceEEeeeecccccccceeccccccccccccccc-eeeeeecccc-cccchhhccceeeeeeec
Confidence 986554332 2588999999999 8999999999999999999885 5555555554 688999999 67776543
Q ss_pred ----------CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCce--
Q 019258 176 ----------FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQ-- 243 (343)
Q Consensus 176 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~-- 243 (343)
.++.+++||+.. ++ ...+..+. ..+..+.|+|++.. +++++.++.+.+||......
T Consensus 147 ~~~~~~~~~~~~~~~~v~d~~~---~~-~~~~~~~~-------~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~~~~~ 214 (360)
T d1k32a3 147 PLKHGETDGYVMQAIHVYDMEG---RK-IFAATTEN-------SHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVLNFSF 214 (360)
T ss_dssp EECSSTTCSCCEEEEEEEETTT---TE-EEECSCSS-------SBEEEEEECTTSCE-EEEEESCCCCCEECSSSSCEEC
T ss_pred cccccceeeccccceeeecccc---Cc-eeeecccc-------cccccccccCCCCE-EEEEeCCCceEcccccccceee
Confidence 355699999977 33 33333222 56889999999875 46889999999998754321
Q ss_pred -----eeeeecCCC-Cc------------------------ccccCCccccEEEEEEeecCCCC---cCCCCCccceEEE
Q 019258 244 -----SIVLSGVGT-GE------------------------AVTHSLSESEVWEVQYDCHTKSS---NISSSRVLPAMFC 290 (343)
Q Consensus 244 -----~~~~~~~~~-~~------------------------~~~~~~h~~~v~~v~~~p~~~~~---~~~~~~~~~l~s~ 290 (343)
+........ .. ........+....+..+++.... ...+....+++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (360)
T d1k32a3 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294 (360)
T ss_dssp CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred ccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEec
Confidence 111110000 00 00000011122233333221100 0000111145677
Q ss_pred ecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 291 SEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 291 s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
+.++.|++|+......+. ....|.+++|+| +|++|+++++|+.|++|+
T Consensus 295 ~~~~~i~~~d~~~~~~~~--~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 295 PEKGVLLKYDVKTRKVTE--VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp CCCEEEEEEETTTCCEEE--EEEEEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCCeEEE--ecCCcCEEEECC-CCCEEEEEECCCeEEEEE
Confidence 788999999976543222 234689999999 689999999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.84 E-value=7.5e-20 Score=160.43 Aligned_cols=252 Identities=9% Similarity=-0.020 Sum_probs=176.4
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.+.+++|...|.+++|+| ++++|++++.|... .|++|++... +......|.+.|.+++|+ ++.+|++++
T Consensus 35 ~~~~~~~~~~v~~~~~sp----Dg~~l~~~~~~~g~---~v~v~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~ 104 (360)
T d1k32a3 35 YVLKVPEPLRIRYVRRGG----DTKVAFIHGTREGD---FLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGKFAVVAN 104 (360)
T ss_dssp BEEECSCCSCEEEEEECS----SSEEEEEEEETTEE---EEEEEETTTC---CEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred cEEEccCCCCEEEEEECC----CCCEEEEEEcCCCC---EEEEEECCCC---cEEEeeCCCceEEeeeecccccccceec
Confidence 455678999999999999 89999988876421 3789999653 234456788999999999 889999999
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe----------CCCcEEEEECCCCceEEEEEcCCCc
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG----------EDGRVNLVSVIGGGEFKRVYDGNGL 157 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s----------~dg~v~~wd~~~~~~~~~~~~~~~~ 157 (343)
.++.+++|++...+...... .|...+.++.|+ ++.++.++ .++.+++||+.+++ .........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~- 179 (360)
T d1k32a3 105 DRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS- 179 (360)
T ss_dssp TTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS-
T ss_pred cccccccccccccceeeeee---cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc-eeeeccccc-
Confidence 99999999998665544433 477788889998 77877543 45568999999874 444443333
Q ss_pred cceEEEEeCC-CCEEEEEeCCCcEEEEEccccCC----CCCeeEEecccCCC----------------------------
Q 019258 158 VGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGS----GGPVLQFKGNFGSQ---------------------------- 204 (343)
Q Consensus 158 ~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~---------------------------- 204 (343)
.+..+.|+| +..|++++.++.+++||...... ...+..+..+....
T Consensus 180 -~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 258 (360)
T d1k32a3 180 -HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258 (360)
T ss_dssp -BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE
T ss_pred -ccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceee
Confidence 588899999 88999999999999998654000 00111111100000
Q ss_pred -CCcccCeEEEEEcCCCCe------------EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 205 -GKASGMIHSVDIHPSRKH------------TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 205 -~~~~~~i~~v~~~p~~~~------------~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
....+....+..++.+.. ++++++.++.|++||+.+.+. ..|.+.|.+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------~~~~~~v~~~~~S 323 (360)
T d1k32a3 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---------------TEVKNNLTDLRLS 323 (360)
T ss_dssp CSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---------------EEEEEEEEEEEEC
T ss_pred cccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---------------EEecCCcCEEEEC
Confidence 000122334444443211 234566788999999987432 1245679999999
Q ss_pred ecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 272 CHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 272 p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
||+. .|++++.||.|++|+...
T Consensus 324 pDG~----------~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 324 ADRK----------TVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp TTSC----------EEEEEETTSCEEEEESSC
T ss_pred CCCC----------EEEEEECCCeEEEEECCC
Confidence 9988 799999999999998753
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.82 E-value=3.5e-17 Score=139.61 Aligned_cols=257 Identities=7% Similarity=0.039 Sum_probs=180.0
Q ss_pred EEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeeccCCcc
Q 019258 37 AVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDENSGFH 114 (343)
Q Consensus 37 l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~~~~h 114 (343)
+|+++.|+. |.+||+.+. +.+..++....+..++|+ ++++| ++++.++.|++||+.+.+.+.... .|
T Consensus 5 yV~~~~~~~-----v~v~D~~t~---~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~ 73 (301)
T d1l0qa2 5 YIANSESDN-----ISVIDVTSN---KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AG 73 (301)
T ss_dssp EEEETTTTE-----EEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS
T ss_pred EEEECCCCE-----EEEEECCCC---eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cc
Confidence 566666653 779999653 345566666778999999 77766 566789999999998766554433 23
Q ss_pred ccCeEEEEec--CC-EEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE-EEEeCCCcEEEEEccccC
Q 019258 115 VGPISGVDLT--GS-ECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF-VTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 115 ~~~v~~~~~~--~~-~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~t~~~d~~i~iwd~~~~~ 189 (343)
.....+.++ +. .++++..++.+.+|+..+++ ....+..+. ...++.+++ +..+ +++..++.+.+|+...
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-- 147 (301)
T d1l0qa2 74 -SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVT-- 147 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTT--
T ss_pred -ccccccccccccccccccccccceeeecccccce-eeeeccccc--cceEEEeecCCCeeeeeeccccceeeeeccc--
Confidence 245778887 55 45566788899999999884 455555444 478899998 5544 5566688999999987
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQ 269 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 269 (343)
...+..+... .....++++|++..+++++..++.+.+|+........... +......++
T Consensus 148 -~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 206 (301)
T d1l0qa2 148 -KAVINTVSVG--------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK------------VEAAPSGIA 206 (301)
T ss_dssp -TEEEEEEECC--------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------CSSEEEEEE
T ss_pred -cceeeecccC--------CCceEEEeeccccceeeecccccccccccccceeeeeccc------------ccCCcceee
Confidence 5555555533 4478999999988877766667788888877644333332 345677899
Q ss_pred EeecCCCCcCCCCCccceEEE--ecCCeEEEEecCCC-cccccccccccceeeecCCCCCee-EEccCCceEEEEe
Q 019258 270 YDCHTKSSNISSSRVLPAMFC--SEDGILAVVEQGEE-PFELLAEPCAINSFDIDPQNPSDV-ICSLEWESIAIVS 341 (343)
Q Consensus 270 ~~p~~~~~~~~~~~~~~l~s~--s~dg~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~~l-~~~~~~~~i~~~~ 341 (343)
|++++.. .++++ ..++.|++||.... ....+.....+.+++++| +|++| ++++.++.|++|+
T Consensus 207 ~~~~g~~---------~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~sp-dg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 207 VNPEGTK---------AYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP-DGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp ECTTSSE---------EEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred ccccccc---------cccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeC-CCCEEEEEECCCCeEEEEE
Confidence 9998873 33333 34468999997643 223333345678999999 56776 6777889999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.78 E-value=5.1e-16 Score=132.22 Aligned_cols=244 Identities=10% Similarity=0.058 Sum_probs=170.9
Q ss_pred CCCccccCCcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCC-e
Q 019258 8 TPPQVHRFPQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQS-L 84 (343)
Q Consensus 8 ~~~~~~~~~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~-~ 84 (343)
+...+.+++.+..+..|+|+| +++++ ++++.++ +|++||+... +.+..++....+..+.|+ ++. .
T Consensus 21 t~~~~~~i~~g~~p~~va~sp----dG~~l~v~~~~~~-----~i~v~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~ 88 (301)
T d1l0qa2 21 SNKVTATIPVGSNPMGAVISP----DGTKVYVANAHSN-----DVSIIDTATN---NVIATVPAGSSPQGVAVSPDGKQV 88 (301)
T ss_dssp TTEEEEEEECSSSEEEEEECT----TSSEEEEEEGGGT-----EEEEEETTTT---EEEEEEECSSSEEEEEECTTSSEE
T ss_pred CCeEEEEEECCCCceEEEEeC----CCCEEEEEECCCC-----EEEEEECCCC---ceeeeeeccccccccccccccccc
Confidence 344677778888899999999 88766 5666664 3779999653 334445555677899998 555 4
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceE
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFN 161 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 161 (343)
++++..++.+.+|+....+...... +.....++.++ +..+ +++..++.+.+|+..+.. .......+. .+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~ 161 (301)
T d1l0qa2 89 YVTNMASSTLSVIDTTSNTVAGTVK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVGR--SPK 161 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECCS--SEE
T ss_pred cccccccceeeecccccceeeeecc----ccccceEEEeecCCCeeeeeeccccceeeeeccccc-eeeecccCC--Cce
Confidence 5566678899999998665554442 33456777777 5554 566778899999999985 444444444 488
Q ss_pred EEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe--cCCcEEEEE
Q 019258 162 CVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG--SSGTVFAWD 237 (343)
Q Consensus 162 ~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~--~dg~v~iwd 237 (343)
.+.+++ ...+++++. ++.+.+|+... ......+... .....+++++++..+++++. .++.|++||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTVKVE--------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECS--------SEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEeeccccceeeecccccccccccccc---eeeeeccccc--------CCcceeeccccccccccccccceeeeeeeee
Confidence 899999 666666665 56666777655 3333333322 44778999999987765543 357899999
Q ss_pred ccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 238 LRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
+++.+....+. +...+.+++|+|++.. .+++++.|++|.+||..
T Consensus 231 ~~t~~~~~~~~------------~~~~~~~va~spdg~~---------l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 231 TGTNKITARIP------------VGPDPAGIAVTPDGKK---------VYVALSFCNTVSVIDTA 274 (301)
T ss_dssp TTTTEEEEEEE------------CCSSEEEEEECTTSSE---------EEEEETTTTEEEEEETT
T ss_pred cCCCeEEEEEc------------CCCCEEEEEEeCCCCE---------EEEEECCCCeEEEEECC
Confidence 99865544443 3356899999999884 44688899999999964
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=1.8e-17 Score=149.80 Aligned_cols=276 Identities=7% Similarity=-0.049 Sum_probs=172.9
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeee--eccC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSV--DENS 111 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~--~~~~ 111 (343)
-++|+.+.|+. +++||+.. .+.+..++....+.+++|+ ++++|++++.||.|++||+...+.... ....
T Consensus 33 ~~~V~~~~dg~-----v~vwD~~t---~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 33 LFSVTLRDAGQ-----IALVDGDS---KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp EEEEEETTTTE-----EEEEETTT---CSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred EEEEEEcCCCE-----EEEEECCC---CcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 45677777764 77999965 3445566666679999999 999999999999999999985543222 2222
Q ss_pred CccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCc-------
Q 019258 112 GFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYG------- 179 (343)
Q Consensus 112 ~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~------- 179 (343)
..|.+.+.++.|+ |+++ +++..++++.+||..++. +......+.. .+....+.+ ....++.+.|+.
T Consensus 105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGM-TVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEE-CSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCC-CccceeecCCCceeEEEECCCCCEEEEecC
Confidence 3466667777776 7765 556689999999999874 4444433322 232222222 222333344444
Q ss_pred ----EEEEEccccCCCCCee-EEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee------
Q 019258 180 ----LQWWDLRRAGSGGPVL-QFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS------ 248 (343)
Q Consensus 180 ----i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~------ 248 (343)
+.+++... ...+. ....+. ..+..+.++|+++.++++...+..+.++|...........
T Consensus 183 ~~~~i~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (426)
T d1hzua2 183 ETGKVLLVNYKD---IDNLTVTSIGAA-------PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 252 (426)
T ss_dssp TTTEEEEEECSS---SSSCEEEEEECC-------SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC
T ss_pred CCCeEEEEEecc---ccceeeEEeccC-------CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc
Confidence 44444333 22211 122222 5688999999998888777778888888876543211110
Q ss_pred -------------------cCCC------------------CcccccCCccccEEEEEEeecCCCCcCCCCCccceE---
Q 019258 249 -------------------GVGT------------------GEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM--- 288 (343)
Q Consensus 249 -------------------~~~~------------------~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~--- 288 (343)
..+- .......+|...+..++|+|++. .|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~----------~l~v~~ 322 (426)
T d1hzua2 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS----------HLYVDT 322 (426)
T ss_dssp CSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS----------EEEECC
T ss_pred ccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc----------eEEEee
Confidence 0000 00012246777899999999988 566
Q ss_pred ----EEecCCeEEEEecCC--Ccccccc---------cccccceeeecCCCCCeeE-E----ccCCceEEEEe
Q 019258 289 ----FCSEDGILAVVEQGE--EPFELLA---------EPCAINSFDIDPQNPSDVI-C----SLEWESIAIVS 341 (343)
Q Consensus 289 ----s~s~dg~i~~~~~~~--~~~~~~~---------~~~~i~s~~~~~~~~~~l~-~----~~~~~~i~~~~ 341 (343)
+++.|++|++|+... ...++.. ....+.++.|+| +|++++ + ++++++|.+|+
T Consensus 323 ~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEE
T ss_pred cCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEE
Confidence 456789999999642 2333321 134588999999 567663 2 34677899985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=2e-16 Score=143.12 Aligned_cols=303 Identities=10% Similarity=-0.020 Sum_probs=179.3
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccC----CCCCCeeEEEcc-CCC
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQW----TPPTRISSLSTS-HQS 83 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~----~~~~~v~~v~~~-~~~ 83 (343)
...+.+++..+.+..++|+| +++++++++.|+. +++|++...... ....+ .+.+.+.+..|+ +++
T Consensus 52 ~~v~~~~~~g~~~~~v~fSp----DG~~l~~~s~dg~-----v~~~d~~t~~~~-~~~~i~~~~~~~~~~~s~~~SpDG~ 121 (432)
T d1qksa2 52 YEIKTVLDTGYAVHISRLSA----SGRYLFVIGRDGK-----VNMIDLWMKEPT-TVAEIKIGSEARSIETSKMEGWEDK 121 (432)
T ss_dssp CCEEEEEECSSCEEEEEECT----TSCEEEEEETTSE-----EEEEETTSSSCC-EEEEEECCSEEEEEEECCSTTCTTT
T ss_pred CcEEEEEeCCCCeeEEEECC----CCCEEEEEcCCCC-----EEEEEeeCCCce-EEEEEecCCCCCCeEEecccCCCCC
Confidence 44677777788899999999 9999999998864 779998542211 11121 234456666777 777
Q ss_pred eE-EEEcCCCcEEEEEccCceeeeeecc--------CCccccCeEEEEec--CCE-EEEEeCCCcEEEEECCCCceEEEE
Q 019258 84 LV-AASTLSGSLHVLSSAMQVLLSVDEN--------SGFHVGPISGVDLT--GSE-CVSVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 84 ~l-~~~s~dg~v~v~~~~~~~~~~~~~~--------~~~h~~~v~~~~~~--~~~-~~s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
+| ++++.++.|++||....+.+..... ...+.+....+.++ +.. +++...++.|.+||..+.+.....
T Consensus 122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~ 201 (432)
T d1qksa2 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 201 (432)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence 65 6777899999999986655533321 11234556677776 554 467788899999999876433222
Q ss_pred EcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE-e
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG-G 228 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg-~ 228 (343)
...... .+.++.|+| +.++++++. ++.+.++|.+. .+.+..+....... +........+.+.+. ..++. .
T Consensus 202 ~i~~g~-~~~~~~~spdg~~~~va~~~~~~v~v~d~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~-~~~~~~l 274 (432)
T d1qksa2 202 EISAER-FLHDGGLDGSHRYFITAANARNKLVVIDTKE---GKLVAIEDTGGQTP--HPGRGANFVHPTFGP-VWATSHM 274 (432)
T ss_dssp EEECCS-SEEEEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSSB--CCTTCEEEEETTTEE-EEEEEBS
T ss_pred EEcccC-ccccceECCCCCEEEEeccccceEEEeeccc---ceEEEEeccCcccc--ccCcccceecCCCCc-eeccccc
Confidence 222333 588999999 665555554 77899999877 44444443221111 112233333333332 22232 2
Q ss_pred cCCcEEEEEccCCce-------eeeeecCCCC--cc------------cccCCccccEEEEEEeecCCCCcCCCCCccce
Q 019258 229 SSGTVFAWDLRWQQQ-------SIVLSGVGTG--EA------------VTHSLSESEVWEVQYDCHTKSSNISSSRVLPA 287 (343)
Q Consensus 229 ~dg~v~iwd~~~~~~-------~~~~~~~~~~--~~------------~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l 287 (343)
.++.|.+|+...... .......+.. .. .....|......+++ |++. .+
T Consensus 275 g~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~----------~l 343 (432)
T d1qksa2 275 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIK----------AM 343 (432)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGG----------GC
T ss_pred CCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eech----------hh
Confidence 366777776543211 0001000000 00 000122222334544 6766 68
Q ss_pred EEEecCCeEEEEecCCCcccccccccccceeeecCCCCCeeEEc-----cCCceEEEEe
Q 019258 288 MFCSEDGILAVVEQGEEPFELLAEPCAINSFDIDPQNPSDVICS-----LEWESIAIVS 341 (343)
Q Consensus 288 ~s~s~dg~i~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~l~~~-----~~~~~i~~~~ 341 (343)
++++.|+.+++|+.... ..+...+..+.++.|+| +|++|+.+ .++++|.||+
T Consensus 344 a~~s~d~~~k~w~~~~~-~~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 344 TGDGSDPEFKTLPIAEW-AGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp CCSSSCCCEEEECHHHH-HTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEE
T ss_pred cccccCCceEecccccc-cccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEE
Confidence 88899999999976332 23333456688999999 67777443 2567888875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.4e-16 Score=134.01 Aligned_cols=271 Identities=11% Similarity=0.022 Sum_probs=170.2
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeeeecc--
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSVDEN-- 110 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~~~~-- 110 (343)
+++++++.|+. |.+||+........+..-.+...+.+++|+ +++++ ++++.++.|.+||+.+.+.+.....
T Consensus 2 ~~~vt~~~d~~-----v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~ 76 (337)
T d1pbyb_ 2 DYILAPARPDK-----LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTE-----EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred eEEEEEcCCCE-----EEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence 58999999865 779999664322222222234568899999 77776 5667899999999987665433321
Q ss_pred CCccccCeEEEEec--CCEEEEEe------------CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEe
Q 019258 111 SGFHVGPISGVDLT--GSECVSVG------------EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGG 175 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s------------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~ 175 (343)
...+...+..+.++ ++.++++. .+..+.+||..++. ....+.... .+..+.+++ +..+++++
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPR--QITMLAWARDGSKLYGLG 153 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCS--SCCCEEECTTSSCEEEES
T ss_pred CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEeccccC--CceEEEEcCCCCEEEEEc
Confidence 11123344566776 66676665 46789999999884 555554444 488899999 66777765
Q ss_pred CCCcEEEEEccccCCCCCeeEEecccCCCCCcc----------------cCeEEEEEcCCCCeEEEEEecCCcEEEEEcc
Q 019258 176 FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKAS----------------GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLR 239 (343)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------------~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~ 239 (343)
. .+.+||... .+....+........... .............. ...+..++.+.+||+.
T Consensus 154 ~--~~~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (337)
T d1pbyb_ 154 R--DLHVMDPEA---GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP-ADPTAYRTGLLTMDLE 227 (337)
T ss_dssp S--SEEEEETTT---TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT-TSGGGEEEEEEEEETT
T ss_pred C--Ccceeeeec---CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccce-eeecccCccEEEEEcC
Confidence 4 467899877 554444433221110000 00000011111100 1123445678899988
Q ss_pred CCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccccccccccccee
Q 019258 240 WQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEPCAINSF 318 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~~~i~s~ 318 (343)
.+....... ..+...+..+.++|++. .++ +.++.|++|+.... .......+..+.++
T Consensus 228 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~----------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 285 (337)
T d1pbyb_ 228 TGEMAMREV----------RIMDVFYFSTAVNPAKT----------RAF--GAYNVLESFDLEKNASIKRVPLPHSYYSV 285 (337)
T ss_dssp TCCEEEEEE----------EECSSCEEEEEECTTSS----------EEE--EEESEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred CCcEEEEEe----------cCCCcceEEEEecccce----------EEE--EccccEEEEECCCCcEEEEEcCCCCEEEE
Confidence 765444433 34667788888998866 344 34689999998643 33333445678999
Q ss_pred eecCCCCCeeEEccCCceEEEEeC
Q 019258 319 DIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+++| +|++|+.++.++.|.+|+-
T Consensus 286 ~~s~-dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 286 NVST-DGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EECT-TSCEEEEESBSSEEEEEET
T ss_pred EECC-CCCEEEEEeCCCcEEEEEC
Confidence 9999 6799999999999999973
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.71 E-value=6.9e-16 Score=139.17 Aligned_cols=263 Identities=13% Similarity=0.098 Sum_probs=159.1
Q ss_pred CCccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc----CCCCCCeeEEEcc-CCC
Q 019258 9 PPQVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ----WTPPTRISSLSTS-HQS 83 (343)
Q Consensus 9 ~~~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~----~~~~~~v~~v~~~-~~~ 83 (343)
...+.+++....+..|+++| +++++++++.|+. +++|++...... .... ..|.+.+.++.|+ +++
T Consensus 52 ~~~~~~l~~g~~~~~vafSP----DGk~l~~~~~d~~-----v~vwd~~t~~~~-~~~~i~~~~~~~~~~~s~~~spDG~ 121 (426)
T d1hzua2 52 KKIVKVIDTGYAVHISRMSA----SGRYLLVIGRDAR-----IDMIDLWAKEPT-KVAEIKIGIEARSVESSKFKGYEDR 121 (426)
T ss_dssp CSEEEEEECCSSEEEEEECT----TSCEEEEEETTSE-----EEEEETTSSSCE-EEEEEECCSEEEEEEECCSTTCTTT
T ss_pred CcEEEEEeCCCCeeEEEECC----CCCEEEEEeCCCC-----EEEEEccCCcee-EEEEEeCCCCCcceEEeeeecCCCC
Confidence 45677888888899999999 9999999998864 779999543211 1111 2344556777788 777
Q ss_pred eEEEE-cCCCcEEEEEccCceeeeeeccC--------CccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCceEEEE
Q 019258 84 LVAAS-TLSGSLHVLSSAMQVLLSVDENS--------GFHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 84 ~l~~~-s~dg~v~v~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~~~~~~ 151 (343)
+|+++ ..++.+++||....+........ ..+.+....+..+ +..++ +....+.+.+++..........
T Consensus 122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 201 (426)
T d1hzua2 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201 (426)
T ss_dssp EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE
T ss_pred EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE
Confidence 76554 57899999999865544333210 0122233334443 33333 3333445555555443222211
Q ss_pred EcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCe-----------------------------------
Q 019258 152 YDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPV----------------------------------- 194 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~----------------------------------- 194 (343)
...+.. .+..+.+.+ ..+++++. .+..+.++|... .+.+
T Consensus 202 ~~~~~~-~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 277 (426)
T d1hzua2 202 SIGAAP-FLADGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS 277 (426)
T ss_dssp EEECCS-SEEEEEECTTSCEEEEEETTCSEEEEEETTT---TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCE
T ss_pred EeccCC-ccEeeeECCCCcEEEeeeecccceeeeeccc---ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCce
Confidence 122332 577888888 55444443 466677776643 2211
Q ss_pred -------------------eEEecccCCCCCcccCeEEEEEcCCCCeEEE------EEecCCcEEEEEccCCceeeeeec
Q 019258 195 -------------------LQFKGNFGSQGKASGMIHSVDIHPSRKHTCL------AGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 195 -------------------~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~------sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
..+.+| ...+..++|+|++.++.+ ++..|++|++||+++++....+..
T Consensus 278 v~~~~~~~~~~~~~~~~~~~~l~g~-------~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~ 350 (426)
T d1hzua2 278 ISLIGTDPKNHPQYAWKKVAELQGQ-------GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 350 (426)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECS-------SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred EEEeeccccccccccceEeEEEecC-------CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence 111111 155889999999987654 356789999999988765544431
Q ss_pred CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE----ecCCeEEEEecCC
Q 019258 250 VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC----SEDGILAVVEQGE 303 (343)
Q Consensus 250 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~----s~dg~i~~~~~~~ 303 (343)
.. .......|...|..++|+|++.. .++++ +.||.|.+||...
T Consensus 351 ~~--~~~~~~~~~~rv~~~~fSpDGk~---------i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 351 IA--EWADLGEGAKRVVQPEYNKRGDE---------VWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp HH--HHHCCCSSCCCEEEEEECSSSSE---------EEEEECCCTTSCCEEEEEETTT
T ss_pred cc--hhcccCCCCccEEEEEECCCCCE---------EEEEEecCCCCCCeEEEEECCC
Confidence 10 00001345677999999999984 44554 4688999999753
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6e-15 Score=127.41 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=177.5
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE-cCCCcEEEEEccCcee-eeeeccC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS-TLSGSLHVLSSAMQVL-LSVDENS 111 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~-s~dg~v~v~~~~~~~~-~~~~~~~ 111 (343)
..+|+++.|+. |++|++........+..+++++.+.+|+|+ ++++|+++ ..|+.|++|++..... .......
T Consensus 5 ~v~v~~~~~~~-----I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~ 79 (333)
T d1ri6a_ 5 TVYIASPESQQ-----IHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 79 (333)
T ss_dssp EEEEEEGGGTE-----EEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEECCCCCc-----EEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence 45678878864 779999765545556667899999999999 88877555 4589999999974322 2221111
Q ss_pred CccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC-CCcEEEEEcc
Q 019258 112 GFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF-GYGLQWWDLR 186 (343)
Q Consensus 112 ~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~ 186 (343)
.+...+..++++ ++++++++ .++.+.+|+..................+.++.+++ .+.++.++. +..|.+|+..
T Consensus 80 -~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~ 158 (333)
T d1ri6a_ 80 -ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 158 (333)
T ss_dssp -ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence 233445678888 78887777 47789999987753222222112222588889999 666666654 6779999987
Q ss_pred ccCCCCCeeEEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee----eecCCCCcccccCCc
Q 019258 187 RAGSGGPVLQFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV----LSGVGTGEAVTHSLS 261 (343)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~h 261 (343)
. ........ ...... .......++|++++..++.+....+...+|+......... ..... .....
T Consensus 159 ~---~~~~~~~~~~~~~~~--~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ 228 (333)
T d1ri6a_ 159 D---DGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP-----ENFSD 228 (333)
T ss_dssp T---TSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC-----TTCCS
T ss_pred c---CCcceeeeceeeeee--cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeee-----cCCCc
Confidence 6 33222211 110000 1144678999999888777777788888888654332211 11000 00123
Q ss_pred cccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC--ccccccc---ccccceeeecCCCCCeeEEc-cCCc
Q 019258 262 ESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE--PFELLAE---PCAINSFDIDPQNPSDVICS-LEWE 335 (343)
Q Consensus 262 ~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~--~~~~~~~---~~~i~s~~~~~~~~~~l~~~-~~~~ 335 (343)
......+++++++.. .++.+..++.+.+|+.... ....... ...+.+++++| +|++|+.+ .+++
T Consensus 229 ~~~~~~~~~s~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~ 298 (333)
T d1ri6a_ 229 TRWAADIHITPDGRH---------LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSH 298 (333)
T ss_dssp CCCEEEEEECTTSSE---------EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTC
T ss_pred cccceeEEEecccCc---------eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCC
Confidence 345678899999885 5667777888888865432 2222221 24567899999 56876554 5668
Q ss_pred eEEEEe
Q 019258 336 SIAIVS 341 (343)
Q Consensus 336 ~i~~~~ 341 (343)
.|.+|+
T Consensus 299 ~v~v~~ 304 (333)
T d1ri6a_ 299 HISVYE 304 (333)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=6.4e-15 Score=133.06 Aligned_cols=190 Identities=7% Similarity=-0.092 Sum_probs=132.9
Q ss_pred CeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCcee--eeeeccC
Q 019258 35 KLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVL--LSVDENS 111 (343)
Q Consensus 35 ~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~--~~~~~~~ 111 (343)
-++++.+.|+. +.+||... .+++..++....+..++|+ ++++|++++.||.+++||+...+. .......
T Consensus 33 ~~~v~~~d~g~-----v~v~D~~t---~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 33 LFSVTLRDAGQ-----IALIDGST---YEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104 (432)
T ss_dssp EEEEEETTTTE-----EEEEETTT---CCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred EEEEEEcCCCE-----EEEEECCC---CcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence 34578877754 77999965 3445555555679999999 999999999999999999874432 2212222
Q ss_pred CccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCceEEEEEcCCC----------ccceEEEEeCC-CCE-EEEEeC
Q 019258 112 GFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGEFKRVYDGNG----------LVGFNCVKWAS-PTE-FVTGGF 176 (343)
Q Consensus 112 ~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~~~~~~~~~~----------~~~v~~~~~~~-~~~-l~t~~~ 176 (343)
..|.+.+.+..|+ |+++ ++++.+++|++||..+++ +...+..+. ......+.+++ +.. +++...
T Consensus 105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~ 183 (432)
T d1qksa2 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183 (432)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence 2466666666666 7765 788899999999999885 444333221 11356777888 444 566777
Q ss_pred CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCc
Q 019258 177 GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQ 242 (343)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~ 242 (343)
+++|.+||... .+.........+ .....++++|+++++++++..+..+.++|.+...
T Consensus 184 ~~~i~~~d~~~---~~~~~~~~i~~g------~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 184 TGKILLVDYTD---LNNLKTTEISAE------RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240 (432)
T ss_dssp TTEEEEEETTC---SSEEEEEEEECC------SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCeEEEEEccC---CCcceEEEEccc------CccccceECCCCCEEEEeccccceEEEeecccce
Confidence 99999999876 443332222221 4588999999999888877778899999987643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=3.5e-15 Score=129.25 Aligned_cols=266 Identities=10% Similarity=0.007 Sum_probs=169.5
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCcc--CCCCCCeeEEEcc-CCCeE-EEEcCCCcEEEEEccCceeeee
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQ--WTPPTRISSLSTS-HQSLV-AASTLSGSLHVLSSAMQVLLSV 107 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~--~~~~~~v~~v~~~-~~~~l-~~~s~dg~v~v~~~~~~~~~~~ 107 (343)
+++++|++++.|+. |.+||+... +++.. +++...+.+++|+ ++.++ +++..++.|++||+...+.+..
T Consensus 6 ~~~~~l~~~~~~~~-----v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNN-----LHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp TTCEEEEEEETTTE-----EEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEcCCCE-----EEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence 38999999999965 779999653 33333 4556678899999 77766 5566789999999987655533
Q ss_pred eccC---CccccCeEEEEec--CCEEEEEe------------CCCcEEEEECCCCceEE--EEEcCCCccceEEEEeCCC
Q 019258 108 DENS---GFHVGPISGVDLT--GSECVSVG------------EDGRVNLVSVIGGGEFK--RVYDGNGLVGFNCVKWASP 168 (343)
Q Consensus 108 ~~~~---~~h~~~v~~~~~~--~~~~~s~s------------~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~ 168 (343)
.... ..+...+..+.++ ++.++.++ .++.+.+||..+++... ....... .+..+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR--QVYLMRAADD 155 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS--SCCCEEECTT
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC--ceEEEEecCC
Confidence 3211 1122345567777 66666554 57788899887653221 1211122 3555666665
Q ss_pred CEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCC-------------------------CeE
Q 019258 169 TEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSR-------------------------KHT 223 (343)
Q Consensus 169 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-------------------------~~~ 223 (343)
..++..+ ..+.+||+.. ++.+..+..+.. ...+.++|++ ...
T Consensus 156 ~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (346)
T d1jmxb_ 156 GSLYVAG--PDIYKMDVKT---GKYTVALPLRNW--------NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 222 (346)
T ss_dssp SCEEEES--SSEEEECTTT---CCEEEEECSTTC--------CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred CEEEEeC--CcceEEEccC---CCEEEEEecCCC--------ccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence 5555443 5688999877 565555543321 1111222222 223
Q ss_pred EEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 224 CLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 224 ~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
++++..++.+.+||+.......... ..|...+..+.+++++. .++..+ ++.|.+|+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----------~~~~~~-~~~v~v~d~~~ 281 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDP----------NQIYGV-LNRLAKYDLKQ 281 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCT----------TEEEEE-ESEEEEEETTT
T ss_pred EeeccCCceEEEEECCCCceEEEEe----------ecccceeEEEEEeCCCC----------EEEEec-CCeEEEEECCC
Confidence 3445566678888887765544444 45777889999998877 455544 56899999754
Q ss_pred C-cccccccccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 E-PFELLAEPCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~-~~~~~~~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
. ..........+.+++++| +|++|+.|+.++.|++|+-
T Consensus 282 ~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 282 RKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp TEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEET
T ss_pred CcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Confidence 3 333333456799999999 6799999999999999973
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.8e-12 Score=110.24 Aligned_cols=261 Identities=10% Similarity=0.098 Sum_probs=163.5
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEee-cCCCCCCceeeeeCCCCCCC-CCCccCCCCCCeeEEEcc-CCCeEEE
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIY-DTDADSPSLETHSISLPASL-TPHSQWTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~-D~~~~~~~l~~w~~~~~~~~-~~~~~~~~~~~v~~v~~~-~~~~l~~ 87 (343)
.+..++++..|..|+|+| ++++|++++. |+ .|++|++...... .......+...+..++|+ ++++|++
T Consensus 29 ~~~~~~~~~~v~~la~sp----DG~~L~v~~~~d~-----~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v 99 (333)
T d1ri6a_ 29 LTQVVDVPGQVQPMVVSP----DKRYLYVGVRPEF-----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFV 99 (333)
T ss_dssp EEEEEECSSCCCCEEECT----TSSEEEEEETTTT-----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEE
T ss_pred EEEEEcCCCCEeEEEEeC----CCCEEEEEECCCC-----eEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEee
Confidence 455667888999999999 8888855544 43 3779998543221 222333455678889999 8888888
Q ss_pred EcC-CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEE----EcCCCccc
Q 019258 88 STL-SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRV----YDGNGLVG 159 (343)
Q Consensus 88 ~s~-dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~----~~~~~~~~ 159 (343)
++. ++.|.+|+............. .+...+.++.++ ++.++.++ .+..+.+|+.......... ........
T Consensus 100 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (333)
T d1ri6a_ 100 GSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 178 (333)
T ss_dssp EETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred cccCCCceeeeccccccceeccccc-CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCC
Confidence 774 778999988744433222211 355567777777 66666665 5567899998764222211 11122225
Q ss_pred eEEEEeCC-CCEEE-EEeCCCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEE
Q 019258 160 FNCVKWAS-PTEFV-TGGFGYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVF 234 (343)
Q Consensus 160 v~~~~~~~-~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~ 234 (343)
...+.|++ ...+. +....+...+|+... ....+.. ...... ..........++++|++..+++++..++.+.
T Consensus 179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~ 255 (333)
T d1ri6a_ 179 PRHMVFHPNEQYAYCVNELNSSVDVWELKD--PHGNIECVQTLDMMPE-NFSDTRWAADIHITPDGRHLYACDRTASLIT 255 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSC--TTSCCEEEEEEECSCT-TCCSCCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ccEEEEeccceeEEeeccccCceEEEeecc--cccceeeeeeeeeeec-CCCccccceeEEEecccCceeeecccCCeEE
Confidence 78899988 44444 444577888888755 2222221 111110 1111145778899999998888888999999
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEec
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQ 301 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~ 301 (343)
+|++............ ..+...+..++|+|++.. .+++++.++.|.+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~--------~~~~~~p~~~a~spDGk~---------l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 256 VFSVSEDGSVLSKEGF--------QPTETQPRGFNVDHSGKY---------LIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEECTTSCCEEEEEE--------EECSSSCCCEEECTTSSE---------EEEECTTTCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEE--------eCCCCCeeEEEEeCCCCE---------EEEEECCCCeEEEEEE
Confidence 9998765443333210 123345778999999983 3444556788999854
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=4.3e-12 Score=108.89 Aligned_cols=232 Identities=11% Similarity=0.051 Sum_probs=147.2
Q ss_pred cccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCccCCC------CCCeeEEEcc-CCCeEEEE
Q 019258 17 QSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQWTP------PTRISSLSTS-HQSLVAAS 88 (343)
Q Consensus 17 ~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~------~~~v~~v~~~-~~~~l~~~ 88 (343)
+...+..++++| +++++ ++++.|+ .|.+||+..... +..+.. ...+..++|+ ++..++++
T Consensus 32 ~~~~~~~i~~sp----Dg~~l~v~~~~~~-----~v~v~D~~t~~~---~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~ 99 (337)
T d1pbyb_ 32 AGPTPMVPMVAP----GGRIAYATVNKSE-----SLVKIDLVTGET---LGRIDLSTPEERVKSLFGAALSPDGKTLAIY 99 (337)
T ss_dssp CTTCCCCEEECT----TSSEEEEEETTTT-----EEEEEETTTCCE---EEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred CCCCccEEEECC----CCCEEEEEECCCC-----eEEEEECCCCcE---EEEEecCCCcccccceeeEEEcCCCcEEEEe
Confidence 345688999999 88776 5666664 377999965322 222211 2345678888 77777776
Q ss_pred c------------CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcC
Q 019258 89 T------------LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDG 154 (343)
Q Consensus 89 s------------~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~ 154 (343)
. .++.+.+|+....+...... +...+.++.++ ++.+++++.+ +.+||..+++ .......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~-~~~~~~~ 172 (337)
T d1pbyb_ 100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGT-LVEDKPI 172 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTE-EEEEECS
T ss_pred ecCCcceeeeccccccceeeccccCCeEEEecc----ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCc-EEEEeec
Confidence 5 35678888887655443332 33456777887 7788887654 7789998874 3433322
Q ss_pred CCccc-----eEEEEeCC------------------CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCCcccC
Q 019258 155 NGLVG-----FNCVKWAS------------------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGKASGM 210 (343)
Q Consensus 155 ~~~~~-----v~~~~~~~------------------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~ 210 (343)
+.... .....+.+ .........++.+.+||... +..... +..+. ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 242 (337)
T d1pbyb_ 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET---GEMAMREVRIMD-------VF 242 (337)
T ss_dssp TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT---CCEEEEEEEECS-------SC
T ss_pred CCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC---CcEEEEEecCCC-------cc
Confidence 21100 00000000 11112223355688898877 443333 32222 56
Q ss_pred eEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE
Q 019258 211 IHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC 290 (343)
Q Consensus 211 i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~ 290 (343)
+..+.++|++..+ +. .++.|++||+++.+....+. +...+.+++|+|++. .|+++
T Consensus 243 ~~~~~~~~~~~~~-~~--~~~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~s~dG~----------~l~v~ 297 (337)
T d1pbyb_ 243 YFSTAVNPAKTRA-FG--AYNVLESFDLEKNASIKRVP------------LPHSYYSVNVSTDGS----------TVWLG 297 (337)
T ss_dssp EEEEEECTTSSEE-EE--EESEEEEEETTTTEEEEEEE------------CSSCCCEEEECTTSC----------EEEEE
T ss_pred eEEEEecccceEE-EE--ccccEEEEECCCCcEEEEEc------------CCCCEEEEEECCCCC----------EEEEE
Confidence 8888999987644 33 35899999999866554443 456788999999988 78999
Q ss_pred ecCCeEEEEecC
Q 019258 291 SEDGILAVVEQG 302 (343)
Q Consensus 291 s~dg~i~~~~~~ 302 (343)
+.||.|++||..
T Consensus 298 ~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 298 GALGDLAAYDAE 309 (337)
T ss_dssp SBSSEEEEEETT
T ss_pred eCCCcEEEEECC
Confidence 999999999975
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.44 E-value=2.8e-10 Score=99.26 Aligned_cols=304 Identities=10% Similarity=-0.024 Sum_probs=168.1
Q ss_pred cCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc---
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST--- 89 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s--- 89 (343)
.-.+...+..++++| +++.++............+++||.... +.+..+.. +....+.|+ ++.+|++++
T Consensus 16 ~~~~~~p~~~~a~sp----dg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~~~-~~~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 16 AGAADGPTNDEAPGA----DGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNG-GFLPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred cccCCCCccccccCC----CCCEEEEEcccccCCCceEEEEECCCC---CEEEEEeC-CCCccEEEcCCCCEEEEEeecC
Confidence 334556788999999 787776553322222335888887542 23333332 233478899 888888775
Q ss_pred -------CCCcEEEEEccCceeeeeeccCCccccCe-------EEEEec--CCEEEE--EeCCCcEEEEECCCCceEEEE
Q 019258 90 -------LSGSLHVLSSAMQVLLSVDENSGFHVGPI-------SGVDLT--GSECVS--VGEDGRVNLVSVIGGGEFKRV 151 (343)
Q Consensus 90 -------~dg~v~v~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~--~~~~~s--~s~dg~v~~wd~~~~~~~~~~ 151 (343)
.++.|.+||....+.+..... +.... ..+.++ ++.++. ...++.+.+|+....+ ....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~ 163 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIADIEL---PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-DDQL 163 (373)
T ss_pred CcccccccceEEEEEECCCCcEEEEEec---CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-EEEE
Confidence 357899999986655433321 22221 233444 444333 3456678888877663 3322
Q ss_pred EcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEec
Q 019258 152 YDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGS 229 (343)
Q Consensus 152 ~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~ 229 (343)
.. ...++.+++ ...+++.+.|+.+.+||... ..............+ .......+.+.+.+ .++..+.
T Consensus 164 ~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 232 (373)
T d2madh_ 164 LS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG---GAAGAGLVGAMLTAA-QNLLTQPAQANKSG--RIVWPVY 232 (373)
T ss_pred ec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCC---ceeeEEEeeeccccC-ccceeeeEEECCCc--eEEEecC
Confidence 22 255667777 45678888999999999877 444443332211000 00223445556654 3456678
Q ss_pred CCcEEEEEccCCceeeeeec-CCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-ccc
Q 019258 230 SGTVFAWDLRWQQQSIVLSG-VGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFE 307 (343)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~ 307 (343)
++.+.+|+............ ..................++++|++...-.....-..+++...++.+.+|+.... ...
T Consensus 233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~ 312 (373)
T d2madh_ 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence 89999999876432211110 0000000000011223345555554421000000003455666778888886433 334
Q ss_pred ccccccccceeeecCCCCCe--eEEccCCceEEEEe
Q 019258 308 LLAEPCAINSFDIDPQNPSD--VICSLEWESIAIVS 341 (343)
Q Consensus 308 ~~~~~~~i~s~~~~~~~~~~--l~~~~~~~~i~~~~ 341 (343)
.+.....+.++.++| +|+. +++++.++.|++|+
T Consensus 313 ~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 313 QISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEE
Confidence 444456789999999 5563 46788889999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=1.2e-11 Score=106.54 Aligned_cols=240 Identities=14% Similarity=0.034 Sum_probs=143.1
Q ss_pred cCCcccceeeEEecCCCCCCCCeE-EEEeecCCCCCCceeeeeCCCCCCCCCCcc----CCCCCCeeEEEcc-CCCeEEE
Q 019258 14 RFPQSKYIDAVRWLPPLSPLSKLA-VLAIYDTDADSPSLETHSISLPASLTPHSQ----WTPPTRISSLSTS-HQSLVAA 87 (343)
Q Consensus 14 ~~~~~~~i~~v~w~p~~~~~~~~l-~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~----~~~~~~v~~v~~~-~~~~l~~ 87 (343)
++++...+..|+|+| +++++ ++++.++ .|.+||+........... ..+...+..+.|+ ++..+++
T Consensus 35 ~~~~~~~p~~l~~sp----DG~~l~v~~~~~~-----~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v 105 (346)
T d1jmxb_ 35 VMPDKFGPGTAMMAP----DNRTAYVLNNHYG-----DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105 (346)
T ss_dssp ECSSCCSSCEEEECT----TSSEEEEEETTTT-----EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred EcCCCCCcceEEECC----CCCEEEEEECCCC-----cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEE
Confidence 356677889999999 88766 5555664 377999965322111111 1111246688888 7777777
Q ss_pred Ec------------CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEcC
Q 019258 88 ST------------LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYDG 154 (343)
Q Consensus 88 ~s------------~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~ 154 (343)
+. .++.+.+|+............. .....+..+.+. +..++..+ +.+.+|++.+++ .......
T Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 181 (346)
T d1jmxb_ 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK-YTVALPL 181 (346)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCC-EEEEECS
T ss_pred EecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecCCCEEEEeC--CcceEEEccCCC-EEEEEec
Confidence 65 4677888887644332221110 011233444444 44444433 458899998875 3333332
Q ss_pred CCccceEEEEeCC---------------------------CCEEEEEeCCCcEEEEEccccCCCCCeeE-EecccCCCCC
Q 019258 155 NGLVGFNCVKWAS---------------------------PTEFVTGGFGYGLQWWDLRRAGSGGPVLQ-FKGNFGSQGK 206 (343)
Q Consensus 155 ~~~~~v~~~~~~~---------------------------~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 206 (343)
+.. ...+.++| ...+.++..+..+.+||+.. +..... +..+.
T Consensus 182 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----- 251 (346)
T d1jmxb_ 182 RNW--NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT---GKTHTQEFADLT----- 251 (346)
T ss_dssp TTC--CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT---CCEEEEEEEECS-----
T ss_pred CCC--ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC---CceEEEEeeccc-----
Confidence 211 11111221 22344455567788888876 443333 22222
Q ss_pred cccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc
Q 019258 207 ASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP 286 (343)
Q Consensus 207 ~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~ 286 (343)
..+..+.++|++..++ .+. ++.|.+||+.+.+....+. +...+.+++|+|++. .
T Consensus 252 --~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~------------~~~~~~~va~s~DG~----------~ 305 (346)
T d1jmxb_ 252 --ELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN------------LDHTYYCVAFDKKGD----------K 305 (346)
T ss_dssp --SCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE------------CSSCCCEEEECSSSS----------C
T ss_pred --ceeEEEEEeCCCCEEE-Eec-CCeEEEEECCCCcEEEEEc------------CCCCEEEEEEcCCCC----------E
Confidence 5688889998887654 333 4689999998865444433 345688999999988 7
Q ss_pred eEEEecCCeEEEEecC
Q 019258 287 AMFCSEDGILAVVEQG 302 (343)
Q Consensus 287 l~s~s~dg~i~~~~~~ 302 (343)
+++++.||.|.+||..
T Consensus 306 l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPD 321 (346)
T ss_dssp EEEESBSSEEEEEETT
T ss_pred EEEEeCCCcEEEEECc
Confidence 9999999999999985
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=1.3e-10 Score=100.70 Aligned_cols=286 Identities=11% Similarity=0.014 Sum_probs=155.6
Q ss_pred CCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc----------CCCcEEEEEcc
Q 019258 32 PLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST----------LSGSLHVLSSA 100 (343)
Q Consensus 32 ~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s----------~dg~v~v~~~~ 100 (343)
++++.++..........-.+++||..... ++..+. .+....++|+ +++.|++.+ .++.|++||..
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~---~~~~~~-~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGR---VIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTE---EEEEEE-ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCCCc---EEEEEE-CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 38877765533222122248899985532 223322 2445578999 787777643 47899999998
Q ss_pred CceeeeeeccCCcc----ccCeEEEEec--CCEEEEE--eCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEE
Q 019258 101 MQVLLSVDENSGFH----VGPISGVDLT--GSECVSV--GEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFV 172 (343)
Q Consensus 101 ~~~~~~~~~~~~~h----~~~v~~~~~~--~~~~~s~--s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 172 (343)
..+..........+ ......+.|+ ++.++.+ +.+..+.+||..+++ ....+..+.. .. .........+
T Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~ 162 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDC--YH-IFPTAPDTFF 162 (355)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSE--EE-EEEEETTEEE
T ss_pred CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc-EeeEEecCCc--ce-EeecCCcceE
Confidence 65544333211111 1223456676 6666655 456789999999885 4444443332 21 1112255667
Q ss_pred EEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeee-ecCC
Q 019258 173 TGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVL-SGVG 251 (343)
Q Consensus 173 t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~-~~~~ 251 (343)
+.+.|+...++.... ...+........ .......+....+.+.+.. ++.++.++.+++|++..+...... ....
T Consensus 163 ~~~~dg~~~~v~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGT---EGTPEITHTEVF-HPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEETTSCEEEEECCS---SSCCEEEECCCC-SCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred EEcCCCCEEEEEecC---CCeEEEEecccc-cceecceeeeccccCCCCe-EEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence 777788877777655 222222221110 0011133555566666554 467789999999999875432211 1000
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC----------CeEEEEecCCC-cccccccccccceeee
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED----------GILAVVEQGEE-PFELLAEPCAINSFDI 320 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d----------g~i~~~~~~~~-~~~~~~~~~~i~s~~~ 320 (343)
................++++|++. .++..+.+ ..|++|+.... ....+.....+.++++
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~----------~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~ 307 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALD----------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINV 307 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTT----------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE
T ss_pred ccceEeeeeeccceEEEEEeCCCC----------eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEE
Confidence 000000000112234467777766 33333222 36888986533 2222333456889999
Q ss_pred cCCCCC--eeEEccCCceEEEEe
Q 019258 321 DPQNPS--DVICSLEWESIAIVS 341 (343)
Q Consensus 321 ~~~~~~--~l~~~~~~~~i~~~~ 341 (343)
+|+ |+ .+++++.++.|++|+
T Consensus 308 spD-G~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 308 SQD-EKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp CCS-SSCEEEEEETTTTEEEEEE
T ss_pred cCC-CCeEEEEEECCCCEEEEEE
Confidence 994 55 346677789999996
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.32 E-value=4.7e-09 Score=91.29 Aligned_cols=244 Identities=9% Similarity=-0.045 Sum_probs=140.6
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCC-----CCCceeeeeCCCCCCCCCCccCCCC-C-------CeeEEEcc-CCCeEEE
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDA-----DSPSLETHSISLPASLTPHSQWTPP-T-------RISSLSTS-HQSLVAA 87 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~-----~~~~l~~w~~~~~~~~~~~~~~~~~-~-------~v~~v~~~-~~~~l~~ 87 (343)
..+.|+| ++++|+.++.+... ..-.+++||..... +...+..+ . ....+.|+ ++..++.
T Consensus 69 ~~~a~Sp----DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v 141 (373)
T d2madh_ 69 PNPVAAH----SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLF 141 (373)
T ss_pred ccEEEcC----CCCEEEEEeecCCcccccccceEEEEEECCCCc---EEEEEecCCcceeEeccCCCcEEEEeCCCcEEE
Confidence 3689999 89999888765321 01147899995532 22222211 1 12345565 4554443
Q ss_pred E--cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--C-CEEEEEeCCCcEEEEECCCCceEEEEEc---C-CCcc
Q 019258 88 S--TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--G-SECVSVGEDGRVNLVSVIGGGEFKRVYD---G-NGLV 158 (343)
Q Consensus 88 ~--s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~s~s~dg~v~~wd~~~~~~~~~~~~---~-~~~~ 158 (343)
. ..++.+.+|+....+... +.....++.++ + ..+++.+.|+++.+||............ . ....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (373)
T d2madh_ 142 FQFAAGPAVGLVVQGGSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred EEEcCCCceEEeeccCCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccc
Confidence 3 335567777765433221 22234455555 4 4568899999999999988642222211 1 1111
Q ss_pred ceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCC---CCcccCeEEEEEcCCCCeE---------E
Q 019258 159 GFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQ---GKASGMIHSVDIHPSRKHT---------C 224 (343)
Q Consensus 159 ~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~---~~~~~~i~~v~~~p~~~~~---------~ 224 (343)
....+.+.+...++..+.++.+.+|+... ...... ........ .........++++|++..+ +
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 215 LTQPAQANKSGRIVWPVYSGKILQADISA---AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred eeeeEEECCCceEEEecCCceEEEEEcCC---CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 23344555666788888999999999876 322111 11110000 0000223344555554433 3
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++...++.+.+||..+++....+. +...+..++|+|++.. +++++++.|++|++||..
T Consensus 292 ~~~~~~~~v~~~d~~t~~~~~~~~------------~~~~~~~~a~spDG~~--------~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGP--------DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EeecCCCeEEEEECCCCcEEEEec------------CCCCeeEEEECCCCCE--------EEEEEeCCCCeEEEEECC
Confidence 456677889999998865544433 5677899999999873 024578999999999975
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=1.1e-08 Score=88.18 Aligned_cols=252 Identities=10% Similarity=-0.008 Sum_probs=143.6
Q ss_pred eeeEEecCCCCCCCCeEEEEeecCC-C----CCCceeeeeCCCCCCCCCC-----ccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 21 IDAVRWLPPLSPLSKLAVLAIYDTD-A----DSPSLETHSISLPASLTPH-----SQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 21 i~~v~w~p~~~~~~~~l~t~s~D~~-~----~~~~l~~w~~~~~~~~~~~-----~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
+..++|+| ++++|+.++.... . ..-.|++||+........+ ...........+.|+ ++..+++++
T Consensus 49 ~~~~a~Sp----Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~ 124 (355)
T d2bbkh_ 49 LPNPVVAD----DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124 (355)
T ss_dssp SCEEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred CCceEEcC----CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec
Confidence 44689999 8887765543110 0 0013789999653211111 111222345678888 777777664
Q ss_pred --CCCcEEEEEccCceeeeeeccCCccccCeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEE-c---CCCccceEEE
Q 019258 90 --LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLTGSECVSVGEDGRVNLVSVIGGGEFKRVY-D---GNGLVGFNCV 163 (343)
Q Consensus 90 --~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~---~~~~~~v~~~ 163 (343)
.+..+.+|+....+.+...... . ...........++..+.||....+............ . ......+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (355)
T d2bbkh_ 125 FSPAPAVGVVDLEGKAFKRMLDVP---D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP 200 (355)
T ss_dssp CSSSCEEEEEETTTTEEEEEEECC---S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCC
T ss_pred CCCCceeeeeecCCCcEeeEEecC---C-cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeec
Confidence 4568899999866555433321 1 111111125666777778777776654432222111 1 1111124444
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEccccCCCCCee--EEecccC---CCCCcccCeEEEEEcCCCCeEEEEEecC-------
Q 019258 164 KWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVL--QFKGNFG---SQGKASGMIHSVDIHPSRKHTCLAGGSS------- 230 (343)
Q Consensus 164 ~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~---~~~~~~~~i~~v~~~p~~~~~~~sg~~d------- 230 (343)
.+.+ ...++.++.++.+.+|++.. +.... ....+.. ...........++++|++..++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 277 (355)
T d2bbkh_ 201 AYSQKAGRLVWPTYTGKIHQIDLSS---GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 277 (355)
T ss_dssp EEETTTTEEEEEBTTSEEEEEECTT---SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred cccCCCCeEEEecCCCeEEEEecCC---CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence 5555 77889999999999999977 33211 1111100 0000112344588899887776554432
Q ss_pred --CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 231 --GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 231 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
..|.+||+++.+....+. +...+.+++|+|++.. +.+++++.|+.|++||...
T Consensus 278 ~~~~v~v~d~~t~~~~~~~~------------~~~~~~~~a~spDG~~--------~l~v~~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 278 ASRFVVVLDAKTGERLAKFE------------MGHEIDSINVSQDEKP--------LLYALSTGDKTLYIHDAES 332 (355)
T ss_dssp CEEEEEEEETTTCCEEEEEE------------EEEEECEEEECCSSSC--------EEEEEETTTTEEEEEETTT
T ss_pred CCCeEEEEeCCCCcEEEEec------------CCCCEEEEEEcCCCCe--------EEEEEECCCCEEEEEECCC
Confidence 369999998865444433 4566889999999863 0345677899999999743
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.93 E-value=6.1e-08 Score=85.57 Aligned_cols=231 Identities=9% Similarity=-0.071 Sum_probs=134.6
Q ss_pred eeEEEcc-CCCeEE-EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CC--EEEEEeCCC------------
Q 019258 74 ISSLSTS-HQSLVA-ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GS--ECVSVGEDG------------ 135 (343)
Q Consensus 74 v~~v~~~-~~~~l~-~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~--~~~s~s~dg------------ 135 (343)
.....+. ++++|+ +...+..|.++|+...+...+... .+......+.++ ++ +++..+.+.
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec--CCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 3333344 666664 445789999999997666555443 245577888887 44 344434332
Q ss_pred -----cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC--------------------------------
Q 019258 136 -----RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG-------------------------------- 177 (343)
Q Consensus 136 -----~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d-------------------------------- 177 (343)
.+..+|..+.+...++.. .. ....+.++| +..+++++.+
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI~v-~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d 228 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQVIV-DG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA 228 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEEEE-SS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred ccccceEEeecCccceeeEEEec-CC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence 124477777643333332 22 367778888 6666555543
Q ss_pred ---------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeee
Q 019258 178 ---------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLS 248 (343)
Q Consensus 178 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~ 248 (343)
+.+.+++... ...+..+... ...+.++++|+|.+++++|..+++|.+||+++......-.
T Consensus 229 Gk~~~v~~~~v~vvd~~~~---~~v~~~IPvg--------ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~ 297 (441)
T d1qnia2 229 GNFKTIGDSKVPVVDGRGE---SEFTRYIPVP--------KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK 297 (441)
T ss_dssp TCCBCCTTCCCCEEECSSS---CSSEEEECCB--------SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred CCEEEeCCCCcEEEEcccC---CceEEEEeCC--------CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence 2333333322 2333333322 3357899999999999999999999999987633211000
Q ss_pred cCCCCccc-ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC--------CCccccc---------c
Q 019258 249 GVGTGEAV-THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG--------EEPFELL---------A 310 (343)
Q Consensus 249 ~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~--------~~~~~~~---------~ 310 (343)
+.....+ .+....-.....+|.+++. ...+.+.|..|.-|+.. +....+. .
T Consensus 298 -~~~~~~~~~~~~~glgplh~~fd~~g~----------~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G 366 (441)
T d1qnia2 298 -IELRDTIVAEPELGLGPLHTTFDGRGN----------AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366 (441)
T ss_dssp -SCGGGGEEECCBCCSCEEEEEECSSSE----------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred -CCcceEEEeecccccCcccceecCCce----------EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence 0000000 0000111234567888765 57788999999999842 1111111 1
Q ss_pred cccccceeeecCCCCCeeEEcc
Q 019258 311 EPCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 311 ~~~~i~s~~~~~~~~~~l~~~~ 332 (343)
+-..+.+..++| +|++|++++
T Consensus 367 H~~~~~~~t~~p-dGk~l~s~~ 387 (441)
T d1qnia2 367 HNHASLTESRDA-DGKWLVVLS 387 (441)
T ss_dssp EEEETTTTSTTC-CCCEEEEEE
T ss_pred CCccccccccCC-CCcEEEecC
Confidence 235678888999 789999995
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.91 E-value=2.5e-07 Score=78.18 Aligned_cols=204 Identities=13% Similarity=0.011 Sum_probs=133.6
Q ss_pred ccccCCcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc
Q 019258 11 QVHRFPQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST 89 (343)
Q Consensus 11 ~~~~~~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s 89 (343)
.++.+|-...+..+++.| +++++++...+++ ||.+..+... .......+.+.+++|. +++++++..
T Consensus 20 v~~~~p~~~~~e~iAv~p----dG~l~vt~~~~~~-------I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~ 86 (302)
T d2p4oa1 20 IITSFPVNTFLENLASAP----DGTIFVTNHEVGE-------IVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGW 86 (302)
T ss_dssp EEEEECTTCCEEEEEECT----TSCEEEEETTTTE-------EEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCCcCCEEECC----CCCEEEEeCCCCE-------EEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEec
Confidence 467788777899999999 8999988776643 5554322222 2234456789999999 888888888
Q ss_pred CCCcEEEEEccCce--eeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcC--------CCc
Q 019258 90 LSGSLHVLSSAMQV--LLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDG--------NGL 157 (343)
Q Consensus 90 ~dg~v~v~~~~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~--------~~~ 157 (343)
.++.+.+++..... ...+... ......+.+.+. +..+++-+.++.+..+|...+......... ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T d2p4oa1 87 NADSIPVVSLVKSDGTVETLLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 164 (302)
T ss_dssp CTTSCEEEEEECTTSCEEEEEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred CCceEEEEEecccccceeecccc--CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence 88888888775321 1111111 234467888887 767777788888888888776322222111 111
Q ss_pred cceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeE--EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEE
Q 019258 158 VGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQ--FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFA 235 (343)
Q Consensus 158 ~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~i 235 (343)
.....+.+.....+++.+..+.|..+|... ...... ..... .....++++++|. ++++...+++|..
T Consensus 165 ~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~-------~~pdgia~d~dG~-l~va~~~~~~V~~ 233 (302)
T d2p4oa1 165 PAANGLKRFGNFLYVSNTEKMLLLRIPVDS---TDKPGEPEIFVEQ-------TNIDDFAFDVEGN-LYGATHIYNSVVR 233 (302)
T ss_dssp CSEEEEEEETTEEEEEETTTTEEEEEEBCT---TSCBCCCEEEEES-------CCCSSEEEBTTCC-EEEECBTTCCEEE
T ss_pred cccccccccCCceeeecCCCCeEEeccccc---cccccccccccCC-------CCCcceEECCCCC-EEEEEcCCCcEEE
Confidence 235667776666777778899998888766 222211 11111 3356799999985 6677778899999
Q ss_pred EEccC
Q 019258 236 WDLRW 240 (343)
Q Consensus 236 wd~~~ 240 (343)
++...
T Consensus 234 i~p~G 238 (302)
T d2p4oa1 234 IAPDR 238 (302)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 97653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.87 E-value=1.1e-07 Score=82.62 Aligned_cols=246 Identities=8% Similarity=-0.055 Sum_probs=139.5
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCC-----CCCceeeeeCCCCCCCCCCc-----cCCCCCCeeEEEcc-CCCeEEEEc-
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDA-----DSPSLETHSISLPASLTPHS-----QWTPPTRISSLSTS-HQSLVAAST- 89 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~-----~~~~l~~w~~~~~~~~~~~~-----~~~~~~~v~~v~~~-~~~~l~~~s- 89 (343)
..++|+| +++.++.++.-... ..-.|++||.........+. ..........+.|+ ++++|+++.
T Consensus 68 ~~~a~sp----Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~ 143 (368)
T d1mdah_ 68 SLAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp CEEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred CcceECC----CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence 4688999 88888876531100 01137899985422110000 01112234578899 888777765
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEE-----cCCCccceEEE
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVY-----DGNGLVGFNCV 163 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~-----~~~~~~~v~~~ 163 (343)
.++.+.+||+...+........ ... .+... ...++..+.||++.++++.......... ..+.. .+...
T Consensus 144 ~~~~v~~~d~~~~~~~~~~~~~---~~~--~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (368)
T d1mdah_ 144 GSSAAAGLSVPGASDDQLTKSA---SCF--HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC-SSQAA 217 (368)
T ss_dssp SSSCEEEEEETTTEEEEEEECS---SCC--CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB-CSCCE
T ss_pred CCCeEEEEECCCCcEeEEeecc---Ccc--eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc-ceeec
Confidence 5799999999876655444321 111 11222 6678888999999999986643222111 11111 34455
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEe--cccC---CCCCcccCeEEEEEcCCCCeEEEEEecC--------
Q 019258 164 KWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFK--GNFG---SQGKASGMIHSVDIHPSRKHTCLAGGSS-------- 230 (343)
Q Consensus 164 ~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~---~~~~~~~~i~~v~~~p~~~~~~~sg~~d-------- 230 (343)
.+.+....+ ....+.+.++++.. ........ .... ......+....++++|++..+++....+
T Consensus 218 ~~~~~g~~~-~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~ 293 (368)
T d1mdah_ 218 QANYPGMLV-WAVASSILQGDIPA---AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp EETTTTEEE-ECBSSCCEEEECCS---SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred ccccCcEEE-EecCCCEEEEeecC---CceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence 666644333 33456677777655 22221111 0000 0000112234577888887766554333
Q ss_pred CcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccc-eEEEecCCeEEEEecC
Q 019258 231 GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLP-AMFCSEDGILAVVEQG 302 (343)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~-l~s~s~dg~i~~~~~~ 302 (343)
..|.+||..+.+....+. +...+..++|+|++.. . +++.+.|+.|++||..
T Consensus 294 ~~v~v~D~~t~~~~~~~~------------~~~~~~~~a~spDG~~---------~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 294 ENTSSVTASVGQTSGPIS------------NGHDSDAIIAAQDGAS---------DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEESSSCCEEECCE------------EEEEECEEEECCSSSC---------EEEEEETTTTEEEEEESS
T ss_pred ceEEEEECCCCcEeEEec------------CCCceeEEEECCCCCE---------EEEEEeCCCCeEEEEECC
Confidence 258899998865433322 4567889999999863 3 4567789999999974
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.80 E-value=6.1e-07 Score=77.72 Aligned_cols=267 Identities=9% Similarity=-0.033 Sum_probs=142.8
Q ss_pred ceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEc----------CCCcEEEEEccCceeeeeeccC---Cc-c
Q 019258 50 SLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAST----------LSGSLHVLSSAMQVLLSVDENS---GF-H 114 (343)
Q Consensus 50 ~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s----------~dg~v~v~~~~~~~~~~~~~~~---~~-h 114 (343)
.++++|..... ++..... +....+.|+ ++..|++.+ .|+.|.+||....+.+...... .. .
T Consensus 47 ~~~~~d~~~~~---~~~~~~~-~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~ 122 (368)
T d1mdah_ 47 ENWVSCAGCGV---TLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTTTE---EEEEEEE-CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred eEEEEeCCCCc---EEEEEeC-CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence 46777774422 2222221 122357888 777777654 3678999999865544332210 00 1
Q ss_pred ccCeEEEEec--CCEEEEEe-CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCC
Q 019258 115 VGPISGVDLT--GSECVSVG-EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSG 191 (343)
Q Consensus 115 ~~~v~~~~~~--~~~~~s~s-~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~ 191 (343)
...-..+.|+ +++++.+. .++.+.+||+.+++ .......+....+ .......+++.+.||.+.++++.. ..
T Consensus 123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~--~~ 196 (368)
T d1mdah_ 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAA--AP 196 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCS--SC
T ss_pred cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecC--Cc
Confidence 1122356677 77777665 67999999999985 4444444432112 112266788888899999999876 22
Q ss_pred CCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcc-cccCCccccEEEEEE
Q 019258 192 GPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEA-VTHSLSESEVWEVQY 270 (343)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~ 270 (343)
..... ..... .......+..+.+.+++. .+ ...++.++++|+................. ............+++
T Consensus 197 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~-~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 271 (368)
T d1mdah_ 197 AAAGI-VGAQC-TGAQNCSSQAAQANYPGM-LV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCCEE-CCCCS-CTTSCBCSCCEEETTTTE-EE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred eeeee-eeccc-ccccccceeecccccCcE-EE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence 22221 11110 000114456777888763 22 24567788888765432221110000000 000001112234677
Q ss_pred eecCCCCcCCCCCccceEEEecC--------CeEEEEecCCC-cccccccccccceeeecCCCCC-e-eEEccCCceEEE
Q 019258 271 DCHTKSSNISSSRVLPAMFCSED--------GILAVVEQGEE-PFELLAEPCAINSFDIDPQNPS-D-VICSLEWESIAI 339 (343)
Q Consensus 271 ~p~~~~~~~~~~~~~~l~s~s~d--------g~i~~~~~~~~-~~~~~~~~~~i~s~~~~~~~~~-~-l~~~~~~~~i~~ 339 (343)
+|++.. .++....+ ..|++||.... ....+.....+.+++++| +|+ + ++++..++.|++
T Consensus 272 ~~~~~~---------~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v 341 (368)
T d1mdah_ 272 LKNTDG---------IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDI 341 (368)
T ss_dssp ETTTTE---------EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC-SSSCEEEEEETTTTEEEE
T ss_pred cCCCCE---------EEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECC-CCCEEEEEEeCCCCeEEE
Confidence 777663 22222222 25888887533 222233346789999999 455 3 356667789999
Q ss_pred Ee
Q 019258 340 VS 341 (343)
Q Consensus 340 ~~ 341 (343)
|+
T Consensus 342 ~D 343 (368)
T d1mdah_ 342 YD 343 (368)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=1.7e-06 Score=77.36 Aligned_cols=139 Identities=11% Similarity=0.057 Sum_probs=91.1
Q ss_pred eeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCC---CccCCCCCCeeEEEcc-CCCeEEEEcC-------
Q 019258 22 DAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTP---HSQWTPPTRISSLSTS-HQSLVAASTL------- 90 (343)
Q Consensus 22 ~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~---~~~~~~~~~v~~v~~~-~~~~l~~~s~------- 90 (343)
..++|++ +++++... |+ .+.+|++........ ...-.+...|.++.|+ +++.|+.++.
T Consensus 20 ~~~~W~~----d~~~~~~~--~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 20 YSLRWIS----DHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (470)
T ss_dssp CCCEECS----SSEEEEES--SS-----CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cCCEeCC----CCEEEEEc--CC-----cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeee
Confidence 4688999 66666432 33 277999965433211 1223355679999999 8888887743
Q ss_pred --CCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCc---------
Q 019258 91 --SGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGL--------- 157 (343)
Q Consensus 91 --dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~--------- 157 (343)
++.+.+||+...+... ...|...+..+.|+ |+.++.. .++.+.+|+..++. ..+.......
T Consensus 89 s~~~~~~l~d~~~~~~~~----l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d 162 (470)
T d2bgra1 89 SYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITD 162 (470)
T ss_dssp CEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC-CEECCSCCBTTTEEESBCC
T ss_pred ccCceEEEEECCCCcccc----cccCCccccccccccCcceeeEe-ecccceEEECCCCc-eeeeeeccCCCcccccccc
Confidence 5788899998655322 23577789999999 8888875 46679999998874 3332211110
Q ss_pred --------cceEEEEeCC-CCEEEEEeCC
Q 019258 158 --------VGFNCVKWAS-PTEFVTGGFG 177 (343)
Q Consensus 158 --------~~v~~~~~~~-~~~l~t~~~d 177 (343)
.....+.|+| +..++....|
T Consensus 163 ~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eeeeeeecCCccccEECCCCCccceeEec
Confidence 1245677999 7777777654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.62 E-value=3.4e-05 Score=66.54 Aligned_cols=166 Identities=8% Similarity=-0.033 Sum_probs=96.9
Q ss_pred ceEEEEeCC-CCEEEEEeC-CCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcE
Q 019258 159 GFNCVKWAS-PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTV 233 (343)
Q Consensus 159 ~v~~~~~~~-~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v 233 (343)
.+.++.|+| ++.++++.. ...|.+|+... ...+.. ..... . ......++|+|+++.++++...+++|
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~---~g~~~~~~~~~~~~--~---g~gPr~i~f~pdg~~~yv~~e~~~~V 217 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPD--P---GDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSS--T---TCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccC---CCceeeccceeecC--C---CCceEEEEECCCCceEEEeccCCCEE
Confidence 588999999 666666654 56788887655 222222 22111 0 14478899999999888888889999
Q ss_pred EEEEccCCceee--eeec---CC---CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCC-----eEEEE
Q 019258 234 FAWDLRWQQQSI--VLSG---VG---TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDG-----ILAVV 299 (343)
Q Consensus 234 ~iwd~~~~~~~~--~~~~---~~---~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg-----~i~~~ 299 (343)
.+||+....... .... .. .........+......+.++|++. +|+++ ..+. .|..+
T Consensus 218 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~----------~lyvsnr~~~~~~~~~i~~~ 287 (365)
T d1jofa_ 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK----------YMFASSRANKFELQGYIAGF 287 (365)
T ss_dssp EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS----------EEEEEEEESSTTSCCEEEEE
T ss_pred EEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC----------EEEEEcccCCCccceEEEEE
Confidence 999986543211 1000 00 000000112334567899999988 44443 2222 36666
Q ss_pred ecCCCc--cc--ccc----cccccceeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 300 EQGEEP--FE--LLA----EPCAINSFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 300 ~~~~~~--~~--~~~----~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
+..... .. ... ....-..|+++|.+|++|+++ .+++.|.+|++
T Consensus 288 ~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 654221 11 111 123457799998667877655 46688999863
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=1.2e-05 Score=67.56 Aligned_cols=226 Identities=6% Similarity=0.035 Sum_probs=136.6
Q ss_pred cCCCCCCeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 67 QWTPPTRISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 67 ~~~~~~~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
.++....+..+++. +++++++...+++|..++..... .... ...+.+.++.+. ++.+++...++.+..++..
T Consensus 23 ~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~----~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 23 SFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA----TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE----ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-EEEE----cCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 34444567889999 88888888889988777654221 1111 234567888888 7888888888888888765
Q ss_pred CCc-eEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecc-cC--CCCCcccCeEEEEEcC
Q 019258 144 GGG-EFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN-FG--SQGKASGMIHSVDIHP 218 (343)
Q Consensus 144 ~~~-~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~~v~~~p 218 (343)
... ................+.+.+ ++.+++.+.++.+..+|... +......... .. ...........+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~ 174 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ---PSGSIWLEHPMLARSNSESVFPAANGLKRFG 174 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT---TEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccC---CcceeEecCCccceeeccCcccccccccccC
Confidence 421 233333333333688899988 66666666788888888765 2211111110 00 0000113356666654
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEE
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAV 298 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~ 298 (343)
..++++.+..+.|..+|............ .........|++++++. ..++...+++|+.
T Consensus 175 --~~l~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~~pdgia~d~dG~----------l~va~~~~~~V~~ 233 (302)
T d2p4oa1 175 --NFLYVSNTEKMLLLRIPVDSTDKPGEPEI---------FVEQTNIDDFAFDVEGN----------LYGATHIYNSVVR 233 (302)
T ss_dssp --TEEEEEETTTTEEEEEEBCTTSCBCCCEE---------EEESCCCSSEEEBTTCC----------EEEECBTTCCEEE
T ss_pred --CceeeecCCCCeEEecccccccccccccc---------ccCCCCCcceEECCCCC----------EEEEEcCCCcEEE
Confidence 56778888999999998765322111110 01123355799999876 5666677889999
Q ss_pred EecCCCcccccccc---cccceeeec
Q 019258 299 VEQGEEPFELLAEP---CAINSFDID 321 (343)
Q Consensus 299 ~~~~~~~~~~~~~~---~~i~s~~~~ 321 (343)
++...+...+.... ....+++|.
T Consensus 234 i~p~G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 234 IAPDRSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp ECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred ECCCCCEEEEEecCCCCCCceEEEEc
Confidence 98765543333322 235677884
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.54 E-value=7.9e-06 Score=71.81 Aligned_cols=223 Identities=11% Similarity=-0.023 Sum_probs=125.7
Q ss_pred EEEEcCCCcEEEEEccCceeeeeeccC---------------------------CccccCeEEEEe--cCCEE-EEEeCC
Q 019258 85 VAASTLSGSLHVLSSAMQVLLSVDENS---------------------------GFHVGPISGVDL--TGSEC-VSVGED 134 (343)
Q Consensus 85 l~~~s~dg~v~v~~~~~~~~~~~~~~~---------------------------~~h~~~v~~~~~--~~~~~-~s~s~d 134 (343)
+++++.+|.|++|++...+.+...... ..|......... .|+++ ++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 667778999999999866554332211 012222222222 26666 455688
Q ss_pred CcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CC-EEEEEeCCCcE------------------EEEEccccCCCCCe
Q 019258 135 GRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PT-EFVTGGFGYGL------------------QWWDLRRAGSGGPV 194 (343)
Q Consensus 135 g~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~t~~~d~~i------------------~iwd~~~~~~~~~~ 194 (343)
.+|.++|+++.+ ......-........++|++ ++ ..+++.....+ ..+|..+ .+..
T Consensus 94 ~rVavIDl~t~k-~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t---~~v~ 169 (441)
T d1qnia2 94 TRVARIRLDIMK-TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET---MDVA 169 (441)
T ss_dssp TEEEEEETTTTE-EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT---CSEE
T ss_pred CEEEEEECCCCc-EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc---ceee
Confidence 899999999985 44444322222799999998 33 24444444333 3466655 4444
Q ss_pred eEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC----------------------------------------CcEE
Q 019258 195 LQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS----------------------------------------GTVF 234 (343)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d----------------------------------------g~v~ 234 (343)
.++... +....++++|+|.+++++.... +.+.
T Consensus 170 ~qI~v~--------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v 241 (441)
T d1qnia2 170 WQVIVD--------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV 241 (441)
T ss_dssp EEEEES--------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred EEEecC--------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence 444432 3467899999998877664332 2222
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc--------
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-------- 306 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-------- 306 (343)
+++... ....... ... ..-..+.++|++.. .++++..++++.+|+......
T Consensus 242 vd~~~~-~~v~~~I----------Pvg-ksPhGv~vSPDGky---------l~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 242 VDGRGE-SEFTRYI----------PVP-KNPHGLNTSPDGKY---------FIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp EECSSS-CSSEEEE----------CCB-SSCCCEEECTTSCE---------EEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred EEcccC-CceEEEE----------eCC-CCccCceECCCCCE---------EEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence 222222 1111111 111 22457899999985 567889999999999532110
Q ss_pred --cccccc---cccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 307 --ELLAEP---CAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 307 --~~~~~~---~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
.+..++ .-..--.+++ +|....+..-+..|.-|+
T Consensus 301 ~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEE
T ss_pred ceEEEeecccccCcccceecC-CceEEEcccccceEEEec
Confidence 111111 0112235666 456666666677777775
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.52 E-value=7e-05 Score=61.14 Aligned_cols=236 Identities=10% Similarity=0.008 Sum_probs=137.8
Q ss_pred CCCCCCeeEEEcc-CCCeEEEEc-CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECC
Q 019258 68 WTPPTRISSLSTS-HQSLVAAST-LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVI 143 (343)
Q Consensus 68 ~~~~~~v~~v~~~-~~~~l~~~s-~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~ 143 (343)
+.+.-.-.++++. +++.+++.. ..+.+..++......... ... .. ..-..++++ +..+++....+.+++++..
T Consensus 10 ~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~-~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 10 IDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFN-GL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-CCC-SC-CSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-ccC-Cc-cCceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence 3344455788888 777666554 456666665553222211 111 11 123456665 6666666666666665544
Q ss_pred CCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCe
Q 019258 144 GGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
+.. .. ..........++++.+ ++.+++-.....+..++... .....+.... . .....++++|++.
T Consensus 87 ~~~-~~--~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~----~--~~p~~i~~~~~g~- 152 (260)
T d1rwia_ 87 NNQ-TV--LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS----KTQTVLPFTG----L--NDPDGVAVDNSGN- 152 (260)
T ss_dssp SCC-EE--CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC----SSCEECCCCS----C--CSCCEEEECTTCC-
T ss_pred cce-ee--eeeeeeeecccccccccceeEeecccccccccccccc----ceeeeeeecc----c--CCcceeeecCCCC-
Confidence 442 22 1112122578899888 56666555566677766544 2222211111 1 3357899999875
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++++...++.|..+|...... .... ...-.....|++++++. .+++....+.|..++..
T Consensus 153 ~~v~~~~~~~i~~~d~~~~~~-~~~~----------~~~~~~p~gi~~d~~g~----------l~vsd~~~~~i~~~~~~ 211 (260)
T d1rwia_ 153 VYVTDTDNNRVVKLEAESNNQ-VVLP----------FTDITAPWGIAVDEAGT----------VYVTEHNTNQVVKLLAG 211 (260)
T ss_dssp EEEEEGGGTEEEEECTTTCCE-EECC----------CSSCCSEEEEEECTTCC----------EEEEETTTTEEEEECTT
T ss_pred Eeeecccccccccccccccee-eeee----------ccccCCCccceeeeeee----------eeeeecCCCEEEEEeCC
Confidence 677778888999999765332 2221 12334567899998875 56677778889888776
Q ss_pred CCcccccccc--cccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 303 EEPFELLAEP--CAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 303 ~~~~~~~~~~--~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
.....+.... .....+++++ +|...++-..+.+|..++.
T Consensus 212 ~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 212 STTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred CCeEEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEeC
Confidence 5444444332 3456899998 4677777666678887764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=6.5e-05 Score=61.34 Aligned_cols=239 Identities=9% Similarity=-0.057 Sum_probs=134.9
Q ss_pred CcccceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCCCcE
Q 019258 16 PQSKYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLSGSL 94 (343)
Q Consensus 16 ~~~~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~dg~v 94 (343)
.+.-....|++.+ +++++++...... ++..++.... ...............+++. ++.++++...++.+
T Consensus 11 ~~~~~P~~vavd~----dG~i~v~~~~~~~----~i~~~~~~~~--~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i 80 (260)
T d1rwia_ 11 DFRLSPSGVAVDS----AGNVYVTSEGMYG----RVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVV 80 (260)
T ss_dssp CSCCCEEEEEECT----TCCEEEEECSSSC----EEEEEC------CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred CCcCCCCEEEEcC----CCCEEEEEcCCCC----EEEEEcCCCc--eEEEeccCCccCceEEEEcCCCCEEEeeeeecee
Confidence 3334567889988 7887776543321 2333433221 1111112222345678887 66666666666666
Q ss_pred EEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEE
Q 019258 95 HVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEF 171 (343)
Q Consensus 95 ~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 171 (343)
++++-.....+ ... .......++++. ++.+++-.....+..++..... .............++++.+ ++.+
T Consensus 81 ~~~~~~~~~~~--~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~~~ 154 (260)
T d1rwia_ 81 TLAAGSNNQTV--LPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNSGNVY 154 (260)
T ss_dssp EECTTCSCCEE--CCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS--CEECCCCSCCSCCEEEECTTCCEE
T ss_pred eeeeeccceee--eee--eeeeecccccccccceeEeeccccccccccccccce--eeeeeecccCCcceeeecCCCCEe
Confidence 65544332222 111 122456788886 6666666666667777765542 2222222222467888888 6777
Q ss_pred EEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCC
Q 019258 172 VTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVG 251 (343)
Q Consensus 172 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~ 251 (343)
++...++.|..+|... .....+.... . .....|++++++ +++++....+.|..++..... .....
T Consensus 155 v~~~~~~~i~~~d~~~----~~~~~~~~~~----~--~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~-~~~~~--- 219 (260)
T d1rwia_ 155 VTDTDNNRVVKLEAES----NNQVVLPFTD----I--TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT-STVLP--- 219 (260)
T ss_dssp EEEGGGTEEEEECTTT----CCEEECCCSS----C--CSEEEEEECTTC-CEEEEETTTTEEEEECTTCSC-CEECC---
T ss_pred eecccccccccccccc----ceeeeeeccc----c--CCCccceeeeee-eeeeeecCCCEEEEEeCCCCe-EEEEc---
Confidence 7777788899998765 2222222111 1 447889999987 477777778889888765422 11111
Q ss_pred CCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 252 TGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 252 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
...-.....|++++++. .+++-..+++|+.++..
T Consensus 220 -------~~~~~~P~~i~~d~~g~----------l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 220 -------FTGLNTPLAVAVDSDRT----------VYVADRGNDRVVKLTSL 253 (260)
T ss_dssp -------CCSCCCEEEEEECTTCC----------EEEEEGGGTEEEEECCC
T ss_pred -------cCCCCCeEEEEEeCCCC----------EEEEECCCCEEEEEeCC
Confidence 11223456889988765 56666677778776653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=0.00039 Score=57.16 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=138.2
Q ss_pred eeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccC---CccccCeEEEEec---CCEEEEE-eCCCcEEEEECCCC
Q 019258 74 ISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENS---GFHVGPISGVDLT---GSECVSV-GEDGRVNLVSVIGG 145 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~---~~h~~~v~~~~~~---~~~~~s~-s~dg~v~~wd~~~~ 145 (343)
...|++. +++++++-..+..|++|+.+. +.+...... ......-..+.+. +..++.. +.++.|..++....
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 103 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ 103 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence 4688887 677777777888999998652 222111110 0111122334433 3444433 45556777775433
Q ss_pred ceEEEEEcCCCccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEE
Q 019258 146 GEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTC 224 (343)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~ 224 (343)
....+..........++..+ +..+++....+.+.++|.. ++.+.++.... .. .....+++.+++ .++
T Consensus 104 --~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~----g~~~~~~g~~~---~~--~~~~~i~~d~~g-~i~ 171 (279)
T d1q7fa_ 104 --FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLHKFGCSK---HL--EFPNGVVVNDKQ-EIF 171 (279)
T ss_dssp --EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEEECTT---TC--SSEEEEEECSSS-EEE
T ss_pred --ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC----Cceeecccccc---cc--cccceeeeccce-eEE
Confidence 34444333333577888888 6666666667777777652 35555553221 11 568889999886 577
Q ss_pred EEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEE-ecCCeEEEEecCC
Q 019258 225 LAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFC-SEDGILAVVEQGE 303 (343)
Q Consensus 225 ~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~-s~dg~i~~~~~~~ 303 (343)
++....+.|++||... +....+-. .+.......|++++++. .+++- ..++.|.+++...
T Consensus 172 v~d~~~~~V~~~d~~G-~~~~~~g~---------~g~~~~P~giavD~~G~----------i~Vad~~~~~~v~~f~~~G 231 (279)
T d1q7fa_ 172 ISDNRAHCVKVFNYEG-QYLRQIGG---------EGITNYPIGVGINSNGE----------ILIADNHNNFNLTIFTQDG 231 (279)
T ss_dssp EEEGGGTEEEEEETTC-CEEEEESC---------TTTSCSEEEEEECTTCC----------EEEEECSSSCEEEEECTTS
T ss_pred eeeccccceeeeecCC-ceeeeecc---------cccccCCcccccccCCe----------EEEEECCCCcEEEEECCCC
Confidence 7888889999999753 33222211 23344567899999886 34443 3455788888755
Q ss_pred Cccccccc---ccccceeeecCCCCCeeEEccCCceEEEEeC
Q 019258 304 EPFELLAE---PCAINSFDIDPQNPSDVICSLEWESIAIVSR 342 (343)
Q Consensus 304 ~~~~~~~~---~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~~ 342 (343)
+....... ......+++.+ +|..+++. .+..|++|+.
T Consensus 232 ~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~-~n~~v~~fr~ 271 (279)
T d1q7fa_ 232 QLISALESKVKHAQCFDVALMD-DGSVVLAS-KDYRLYIYRY 271 (279)
T ss_dssp CEEEEEEESSCCSCEEEEEEET-TTEEEEEE-TTTEEEEEEC
T ss_pred CEEEEEeCCCCCCCEeEEEEeC-CCcEEEEe-CCCeEEEEEe
Confidence 43222221 23457888888 55666554 5789999873
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.34 E-value=3.4e-06 Score=75.42 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=94.7
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--------ecCCc
Q 019258 161 NCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--------GSSGT 232 (343)
Q Consensus 161 ~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--------~~dg~ 232 (343)
..+.|.+...++.- .|+.|.+||+.+ ++....+..+.-.. +...|.++.|+|++..++.+. +.++.
T Consensus 20 ~~~~W~~d~~~~~~-~~~~~~~~~~~t---~~~~~~~~~~~~~~--~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHEYLYK-QENNILVFNAEY---GNSSVFLENSTFDE--FGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSEEEEE-SSSCEEEEETTT---CCEEEEECTTTTTT--SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCEEEEE-cCCcEEEEECCC---CCEEEEEchhhhhh--ccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 35678886666654 588899999988 55443343332111 125699999999998765432 23578
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-cccccc
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAE 311 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~ 311 (343)
+.+||+.+++ ...+ ..|...+..+.|+|++. .++. ..++.+++|+..... ..+...
T Consensus 94 ~~l~d~~~~~-~~~l-----------~~~~~~~~~~~~SPDG~----------~ia~-~~~~~l~~~~~~~g~~~~~t~~ 150 (470)
T d2bgra1 94 YDIYDLNKRQ-LITE-----------ERIPNNTQWVTWSPVGH----------KLAY-VWNNDIYVKIEPNLPSYRITWT 150 (470)
T ss_dssp EEEEETTTTE-ECCS-----------SCCCTTEEEEEECSSTT----------CEEE-EETTEEEEESSTTSCCEECCSC
T ss_pred EEEEECCCCc-cccc-----------ccCCccccccccccCcc----------eeeE-eecccceEEECCCCceeeeeec
Confidence 8999998753 2222 45778899999999998 5666 457789998864332 211111
Q ss_pred -------------------ccccceeeecCCCCCeeEEccCC
Q 019258 312 -------------------PCAINSFDIDPQNPSDVICSLEW 334 (343)
Q Consensus 312 -------------------~~~i~s~~~~~~~~~~l~~~~~~ 334 (343)
......+.|+| +|++|+....+
T Consensus 151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d 191 (470)
T d2bgra1 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN 191 (470)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred cCCCcccccccceeeeeeecCCccccEECC-CCCccceeEec
Confidence 12345678999 67888876543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.34 E-value=0.00029 Score=59.11 Aligned_cols=252 Identities=9% Similarity=-0.036 Sum_probs=137.0
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCC--CCCceeeeeCCCCCCCCCCc---cCCCCCCeeEEEcc-CCCeEEEEcCCCc
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDA--DSPSLETHSISLPASLTPHS---QWTPPTRISSLSTS-HQSLVAASTLSGS 93 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~--~~~~l~~w~~~~~~~~~~~~---~~~~~~~v~~v~~~-~~~~l~~~s~dg~ 93 (343)
....++|.| +++++++....... ..-+|..|+....... ... .....+.-..+.|. ++++|+++.....
T Consensus 19 g~EGpa~d~----dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~ 93 (314)
T d1pjxa_ 19 GAEGPVFDK----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG 93 (314)
T ss_dssp TCEEEEECT----TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred CCeEeEEeC----CCCEEEEECccccccccCCEEEEEECCCCcEE-EEECCccccCCCcceeEEEeCCCCEEEEEECCCe
Confidence 467789998 78877764321100 0013445555332111 000 00112345678898 7777777777667
Q ss_pred EEEEEccCceeeeeeccCCcc-ccCeEEEEec--CCEEEEEeC---------------CCcEEEEECCCCceEEEEEcCC
Q 019258 94 LHVLSSAMQVLLSVDENSGFH-VGPISGVDLT--GSECVSVGE---------------DGRVNLVSVIGGGEFKRVYDGN 155 (343)
Q Consensus 94 v~v~~~~~~~~~~~~~~~~~h-~~~v~~~~~~--~~~~~s~s~---------------dg~v~~wd~~~~~~~~~~~~~~ 155 (343)
+..++................ ....+.+.+. |...++-.. +|.|..++.+. ........-
T Consensus 94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~~~~~~~~~ 171 (314)
T d1pjxa_ 94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--QMIQVDTAF 171 (314)
T ss_dssp EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--CEEEEEEEE
T ss_pred EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC--ceeEeeCCc
Confidence 777776533221111111011 1134677777 666665321 23344444332 223322211
Q ss_pred CccceEEEEeCC-CC-----EEEEEeCCCcEEEEEccccCCCCCeeE---EecccCCCCCcccCeEEEEEcCCCCeEEEE
Q 019258 156 GLVGFNCVKWAS-PT-----EFVTGGFGYGLQWWDLRRAGSGGPVLQ---FKGNFGSQGKASGMIHSVDIHPSRKHTCLA 226 (343)
Q Consensus 156 ~~~~v~~~~~~~-~~-----~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~v~~~p~~~~~~~s 226 (343)
. .-..++|++ .+ .+++-+..+.|..||+.. ...+.. +..... . .....-.+++.++|. ++++
T Consensus 172 ~--~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~---~g~~~~~~~~~~~~~-~--~~~~pdGiavD~~Gn-lyVa 242 (314)
T d1pjxa_ 172 Q--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPG-T--HEGGADGMDFDEDNN-LLVA 242 (314)
T ss_dssp S--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCC-C--SSCEEEEEEEBTTCC-EEEE
T ss_pred c--eeeeeEECCCCCcceeEEEEEeecccceEEeeccC---ccccceeeEEEEccc-c--ccccceeeEEecCCc-EEEE
Confidence 1 245777876 32 455556788999999876 333322 111110 0 002356789999885 6667
Q ss_pred EecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc
Q 019258 227 GGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF 306 (343)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~ 306 (343)
....+.|.+||.+... ..... ........+++|.|++.. ..++.+.+|+|+..+....-.
T Consensus 243 ~~~~g~I~~~dp~~g~-~~~~i----------~~p~~~~t~~afg~d~~~---------lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 243 NWGSSHIEVFGPDGGQ-PKMRI----------RCPFEKPSNLHFKPQTKT---------IFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EETTTEEEEECTTCBS-CSEEE----------ECSSSCEEEEEECTTSSE---------EEEEETTTTEEEEEECSSCBC
T ss_pred EcCCCEEEEEeCCCCE-EEEEE----------ECCCCCEEEEEEeCCCCE---------EEEEECCCCcEEEEECCCCCh
Confidence 7778999999987543 22222 122356789999998765 567778889999988755443
Q ss_pred c
Q 019258 307 E 307 (343)
Q Consensus 307 ~ 307 (343)
+
T Consensus 303 ~ 303 (314)
T d1pjxa_ 303 K 303 (314)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=0.00046 Score=55.85 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=122.1
Q ss_pred CCCCCeeEEEcc-CCCeEEEEcC-CC--cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe-CCCcEEEEE
Q 019258 69 TPPTRISSLSTS-HQSLVAASTL-SG--SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG-EDGRVNLVS 141 (343)
Q Consensus 69 ~~~~~v~~v~~~-~~~~l~~~s~-dg--~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s-~dg~v~~wd 141 (343)
.....+.+-+|+ +++.|+-... .+ .+.+.+.......... .+.+......|+ +..++... .++...++.
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 111 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe----eeecccccceecCCCCeeeEeeecCCccceee
Confidence 455678889999 8888876544 33 3444454433322222 355677788888 77666554 333333333
Q ss_pred CCCC-ceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcC
Q 019258 142 VIGG-GEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHP 218 (343)
Q Consensus 142 ~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p 218 (343)
.... ........... ......+.+ ...+++...++...+|.... ............ .......++|
T Consensus 112 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~~~~~-------~~~~~~~~sp 180 (269)
T d2hqsa1 112 MDLASGQIRQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI--NGGAPQRITWEG-------SQNQDADVSS 180 (269)
T ss_dssp EETTTCCEEECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEET--TSSCCEECCCSS-------SEEEEEEECT
T ss_pred cccccccceeeeeccc--cccccccccccccceecccccCCceEeeeec--ccccceeeeccc-------cccccccccc
Confidence 3221 12222222222 233444455 44455555566655555443 122222333222 5577789999
Q ss_pred CCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecC---Ce
Q 019258 219 SRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSED---GI 295 (343)
Q Consensus 219 ~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~d---g~ 295 (343)
++..++......|...+|.+.......... .+........|+|++. .|+..+.. ..
T Consensus 181 dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~p~~SPDG~----------~i~f~s~~~~~~~ 239 (269)
T d2hqsa1 181 DGKFMVMVSSNGGQQHIAKQDLATGGVQVL-----------SSTFLDETPSLAPNGT----------MVIYSSSQGMGSV 239 (269)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEEC-----------CCSSSCEEEEECTTSS----------EEEEEEEETTEEE
T ss_pred ccceeEEEeecCCceeeeEeecccccceEe-----------ecCccccceEECCCCC----------EEEEEEcCCCCcE
Confidence 999888777777777776655433333332 2345567789999988 45544433 35
Q ss_pred EEEEecCCCcc-cccccccccceeeecC
Q 019258 296 LAVVEQGEEPF-ELLAEPCAINSFDIDP 322 (343)
Q Consensus 296 i~~~~~~~~~~-~~~~~~~~i~s~~~~~ 322 (343)
|++++...... .+......+....|+|
T Consensus 240 l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 240 LNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 78888764433 3334456677888888
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=0.00087 Score=54.12 Aligned_cols=210 Identities=13% Similarity=0.111 Sum_probs=119.8
Q ss_pred cEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCC---cEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 93 SLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDG---RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 93 ~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg---~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.|.|.|........+.. +...+.+..|+ |+.|+-..... .+.+.+...+. ......... ......|+|
T Consensus 20 ~l~i~d~dG~~~~~l~~----~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~sp 92 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR--HNGAPAFSP 92 (269)
T ss_dssp EEEEEETTSCSCEEEEE----ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSS--CEEEEEECT
T ss_pred EEEEEcCCCCCcEEEec----CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeec--ccccceecC
Confidence 46666665333333332 44567888998 88888665433 35666666663 444443333 478889999
Q ss_pred -CCEEEEEeC-CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEE--EccCCce
Q 019258 168 -PTEFVTGGF-GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAW--DLRWQQQ 243 (343)
Q Consensus 168 -~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iw--d~~~~~~ 243 (343)
+..++.... ++...++.... ............ .......+.+.+..++++...+|...+| ++....
T Consensus 93 dg~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~- 162 (269)
T d2hqsa1 93 DGSKLAFALSKTGSLNLYVMDL--ASGQIRQVTDGR-------SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA- 162 (269)
T ss_dssp TSSEEEEEECTTSSCEEEEEET--TTCCEEECCCCS-------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-
T ss_pred CCCeeeEeeecCCccceeeccc--ccccceeeeecc-------ccccccccccccccceecccccCCceEeeeeccccc-
Confidence 665555443 44444444433 122222222111 3345566777777777777777765554 444432
Q ss_pred eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEec-CCe--EEEEecCCCcccccccccccceeee
Q 019258 244 SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSE-DGI--LAVVEQGEEPFELLAEPCAINSFDI 320 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~-dg~--i~~~~~~~~~~~~~~~~~~i~s~~~ 320 (343)
.... ..+........|+|++. .++..+. .|. |++.+.......+...........|
T Consensus 163 -~~~~----------~~~~~~~~~~~~spdg~----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~ 221 (269)
T d2hqsa1 163 -PQRI----------TWEGSQNQDADVSSDGK----------FMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL 221 (269)
T ss_dssp -CEEC----------CCSSSEEEEEEECTTSS----------EEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred -ceee----------ecccccccccccccccc----------eeEEEeecCCceeeeEeecccccceEeecCccccceEE
Confidence 2222 23456677889999988 4555444 444 4445555555555555666777889
Q ss_pred cCCCCCeeEEccC---CceEEEEe
Q 019258 321 DPQNPSDVICSLE---WESIAIVS 341 (343)
Q Consensus 321 ~~~~~~~l~~~~~---~~~i~~~~ 341 (343)
+| +|+.|+-.+. ...|++++
T Consensus 222 SP-DG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 222 AP-NGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp CT-TSSEEEEEEEETTEEEEEEEE
T ss_pred CC-CCCEEEEEEcCCCCcEEEEEE
Confidence 99 6787765443 23555554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.08 E-value=0.0017 Score=53.04 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=135.5
Q ss_pred ceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCC-------CCCCeeEEEcc-C-CCeEEEE-c
Q 019258 20 YIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWT-------PPTRISSLSTS-H-QSLVAAS-T 89 (343)
Q Consensus 20 ~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~-------~~~~v~~v~~~-~-~~~l~~~-s 89 (343)
....|+..| +++++++-...+ +|++|+..... +..+. .......+.+. + +..+++. +
T Consensus 24 ~P~gvavd~----dg~i~VaD~~n~-----rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 90 (279)
T d1q7fa_ 24 EPSGVAVNA----QNDIIVADTNNH-----RIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 90 (279)
T ss_dssp CEEEEEECT----TCCEEEEEGGGT-----EEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CccEEEEcC----CCCEEEEECCCC-----EEEEEeCCCCE----EEEecccCCCcccccccccccccccccccceeccC
Confidence 467888888 788887744332 46677764321 11111 11123344444 2 3333333 3
Q ss_pred CCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC
Q 019258 90 LSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS 167 (343)
Q Consensus 90 ~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (343)
.++.|..++... ....... .........+.+. +..+++....+.+.+++.... .....-..........+++.+
T Consensus 91 ~~~~i~~~~~~g-~~~~~~~--~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i~~d~ 166 (279)
T d1q7fa_ 91 PTHQIQIYNQYG-QFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVND 166 (279)
T ss_dssp GGCEEEEECTTS-CEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECS
T ss_pred Cccccccccccc-cceeecC--CCcccccceeccccCCcEEEEeeccceeeEeccCCc-eeecccccccccccceeeecc
Confidence 345666665542 2221111 1233445667776 677777777777888876543 233322222223577888888
Q ss_pred -CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-cCCcEEEEEccCCceee
Q 019258 168 -PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-SSGTVFAWDLRWQQQSI 245 (343)
Q Consensus 168 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~dg~v~iwd~~~~~~~~ 245 (343)
++.+++....+.|++||.. ++.+.++.. .+.. .....|+++|++. ++++-. .++.|.+||. .++...
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~----G~~~~~~g~-~g~~----~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~ 235 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYE----GQYLRQIGG-EGIT----NYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLIS 235 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETT----CCEEEEESC-TTTS----CSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEE
T ss_pred ceeEEeeeccccceeeeecC----Cceeeeecc-cccc----cCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEE
Confidence 6677777779999999873 355555532 1111 4578899999986 555544 4567999984 344333
Q ss_pred eeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCC
Q 019258 246 VLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGE 303 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~ 303 (343)
.+.. .......+.|++.|++. |+.++.+++|++|+...
T Consensus 236 ~~~~---------~~~~~~p~~vav~~dG~-----------l~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 236 ALES---------KVKHAQCFDVALMDDGS-----------VVLASKDYRLYIYRYVQ 273 (279)
T ss_dssp EEEE---------SSCCSCEEEEEEETTTE-----------EEEEETTTEEEEEECSC
T ss_pred EEeC---------CCCCCCEeEEEEeCCCc-----------EEEEeCCCeEEEEEeee
Confidence 3321 11223568899998864 45566789999998754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.08 E-value=0.0021 Score=53.78 Aligned_cols=231 Identities=11% Similarity=0.019 Sum_probs=122.0
Q ss_pred cceeeEEecCCCCCCCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcCC--CcEE
Q 019258 19 KYIDAVRWLPPLSPLSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTLS--GSLH 95 (343)
Q Consensus 19 ~~i~~v~w~p~~~~~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~d--g~v~ 95 (343)
.....++|.+ +++++++-...+ +|.-++....... .......+....+++. ++.++++...+ ....
T Consensus 40 ~~lEG~~~D~----~G~Ly~~D~~~g-----~I~ri~p~g~~~~--~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~ 108 (319)
T d2dg1a1 40 LQLEGLNFDR----QGQLFLLDVFEG-----NIFKINPETKEIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 108 (319)
T ss_dssp CCEEEEEECT----TSCEEEEETTTC-----EEEEECTTTCCEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cCcEeCEECC----CCCEEEEECCCC-----EEEEEECCCCeEE--EEEeCCCCCeeEEEECCCCCEEEEecCCCcccee
Confidence 3456888888 777777643332 2334444322111 1123445567899998 77766665432 2333
Q ss_pred EEEcc--CceeeeeeccCCccccCeEEEEec--CCEEEEEeC------CCcEEEEECCCCceEEEEEcCCCccceEEEEe
Q 019258 96 VLSSA--MQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE------DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 96 v~~~~--~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 165 (343)
++.+. ........... .-....+.+.+. |..+++-.. .+.+..++.+.. .+..+...-. ....++|
T Consensus 109 i~~~~~~~~~~~~~~~~~-~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~--~pnGia~ 184 (319)
T d2dg1a1 109 IFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNIS--VANGIAL 184 (319)
T ss_dssp EEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEES--SEEEEEE
T ss_pred EEEEcCCCceeeeeccCC-CcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccc--eeeeeee
Confidence 44433 22212222111 112346777777 665555332 123444444433 2333332222 3678999
Q ss_pred CC-CC-EEEEEeCCCcEEEEEccccCCCCCeeEEecc--cCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCC
Q 019258 166 AS-PT-EFVTGGFGYGLQWWDLRRAGSGGPVLQFKGN--FGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQ 241 (343)
Q Consensus 166 ~~-~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~ 241 (343)
++ ++ .+++-+..+.|..||+.. .+......... ....+. .....++++++|. +.++...++.|.+||- .+
T Consensus 185 s~dg~~lyvad~~~~~I~~~d~~~--~g~~~~~~~~~~~~~~~~~--~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G 258 (319)
T d2dg1a1 185 STDEKVLWVTETTANRLHRIALED--DGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RG 258 (319)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECT--TSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TS
T ss_pred ccccceEEEecccCCceEEEEEcC--CCceeccccceeeeccCCc--cceeeeeEcCCCC-EEEEEcCCCEEEEECC-CC
Confidence 99 55 456666789999999876 23333221110 000000 2256789999885 6677788999999995 44
Q ss_pred ceeeeeecCCCCcccccCCccccEEEEEEeecCC
Q 019258 242 QQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTK 275 (343)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 275 (343)
+....+. .... ...+...+.+++|.|...
T Consensus 259 ~~l~~i~-~P~~----~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 259 YPIGQIL-IPGR----DEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp CEEEEEE-CTTG----GGTCSCBCCEEEECTTSC
T ss_pred cEEEEEe-CCCc----CCCcCceeeeEEEeCCCC
Confidence 4333322 1100 023445678899988765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.05 E-value=0.00041 Score=59.48 Aligned_cols=228 Identities=8% Similarity=-0.018 Sum_probs=116.5
Q ss_pred eEEEEcC--CCcEEEEEccCc-eeeeeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEE-cCCC
Q 019258 84 LVAASTL--SGSLHVLSSAMQ-VLLSVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSVIGGGEFKRVY-DGNG 156 (343)
Q Consensus 84 ~l~~~s~--dg~v~v~~~~~~-~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~~~~~~~~~~~-~~~~ 156 (343)
.|++|+. ++.|.++.+... ..+.+.. .......++..|.++ ++.+.++.. +.+..|.+.......... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 4777764 567888777632 2232221 111234455678887 667766654 567777765422222221 1111
Q ss_pred ccceEEEEeCC-CCE-EEEEe-C-CCcEEEEEccccCC---------CCCeeE-EecccCCCCCcccCeEEEEEcCCCCe
Q 019258 157 LVGFNCVKWAS-PTE-FVTGG-F-GYGLQWWDLRRAGS---------GGPVLQ-FKGNFGSQGKASGMIHSVDIHPSRKH 222 (343)
Q Consensus 157 ~~~v~~~~~~~-~~~-l~t~~-~-d~~i~iwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~ 222 (343)
. ....+.+++ +.. +++.. . .+.+..+.+..... ...+.. ...... + ....++++.|+|++.+
T Consensus 83 ~-~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q--~~~h~h~v~~sPdG~~ 158 (365)
T d1jofa_ 83 G-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-Q--ENTGIHGMVFDPTETY 158 (365)
T ss_dssp S-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-C--TTCCEEEEEECTTSSE
T ss_pred C-CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCccc-C--CCCcceEEEECCCCCE
Confidence 1 233445555 221 22222 1 34444443322000 111111 111110 0 0134789999999998
Q ss_pred EEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 223 TCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 223 ~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
++++......|.+|+.............. ..........+.|+|+++. ..++.-.+++|.+|+..
T Consensus 159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~------~~~~g~gPr~i~f~pdg~~---------~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 159 LYSADLTANKLWTHRKLASGEVELVGSVD------APDPGDHPRWVAMHPTGNY---------LYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEE------CSSTTCCEEEEEECTTSSE---------EEEEETTTTEEEEEEEC
T ss_pred EEEeeCCCCEEEEEEccCCCceeecccee------ecCCCCceEEEEECCCCce---------EEEeccCCCEEEEEEec
Confidence 88776667789998865432221111000 0122356789999999884 44566678889988764
Q ss_pred CCccc-cc--------cc------------ccccceeeecCCCCCeeEEcc
Q 019258 303 EEPFE-LL--------AE------------PCAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 303 ~~~~~-~~--------~~------------~~~i~s~~~~~~~~~~l~~~~ 332 (343)
..... +. .. ......+.++| +|++|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsn 273 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASS 273 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEc
Confidence 32211 00 00 01234678888 678887764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.93 E-value=0.0039 Score=52.03 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=127.5
Q ss_pred CeeEEEcc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeCC----CcEEEEECCCC
Q 019258 73 RISSLSTS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGED----GRVNLVSVIGG 145 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~d----g~v~~wd~~~~ 145 (343)
.+..+.|. +++++++-..++.|..|+........... ........+.+. +..+++...+ +.+...+....
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~---~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe---CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 34678887 77777777788888777765433222221 123356788887 6666654332 33444454444
Q ss_pred ceEEEEEcC-CCccceEEEEeCC-CCEEEEEeC------CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEc
Q 019258 146 GEFKRVYDG-NGLVGFNCVKWAS-PTEFVTGGF------GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIH 217 (343)
Q Consensus 146 ~~~~~~~~~-~~~~~v~~~~~~~-~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 217 (343)
. ....... ........+.+.+ ++..++... .+.+..++.. +..+..+...- ...+.++|+
T Consensus 118 ~-~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d----g~~~~~~~~~~-------~~pnGia~s 185 (319)
T d2dg1a1 118 N-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD----FRTVTPIIQNI-------SVANGIALS 185 (319)
T ss_dssp S-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT----SCCEEEEEEEE-------SSEEEEEEC
T ss_pred e-eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc----cceeEEEeecc-------ceeeeeeec
Confidence 2 3333332 2222477888888 554444322 1223333332 23444332111 346789999
Q ss_pred CCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEE
Q 019258 218 PSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILA 297 (343)
Q Consensus 218 p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~ 297 (343)
|++..++++-+..++|..||+............. ..........--.|++++++. ..++....|.|.
T Consensus 186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~---~~~~~~~~~~PdGl~vD~~G~----------l~Va~~~~g~V~ 252 (319)
T d2dg1a1 186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT---IPYYFTGHEGPDSCCIDSDDN----------LYVAMYGQGRVL 252 (319)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE---EEEECCSSSEEEEEEEBTTCC----------EEEEEETTTEEE
T ss_pred cccceEEEecccCCceEEEEEcCCCceeccccce---eeeccCCccceeeeeEcCCCC----------EEEEEcCCCEEE
Confidence 9998888888889999999986532211110000 000011112345788988876 556667789999
Q ss_pred EEecCCCcccccccc-------cccceeeecCCCCCeeEEc
Q 019258 298 VVEQGEEPFELLAEP-------CAINSFDIDPQNPSDVICS 331 (343)
Q Consensus 298 ~~~~~~~~~~~~~~~-------~~i~s~~~~~~~~~~l~~~ 331 (343)
+++...+......-+ ..+.++++.+.....+++.
T Consensus 253 ~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 253 VFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 999865443222222 2367888877443344443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.74 E-value=0.0082 Score=49.84 Aligned_cols=238 Identities=9% Similarity=0.055 Sum_probs=130.7
Q ss_pred eeEEEcc-CCCeEEEEcC-------CCcEEEEEccCceeeeeec-cCCccccCeEEEEec--CCEEEEEeCCCcEEEEEC
Q 019258 74 ISSLSTS-HQSLVAASTL-------SGSLHVLSSAMQVLLSVDE-NSGFHVGPISGVDLT--GSECVSVGEDGRVNLVSV 142 (343)
Q Consensus 74 v~~v~~~-~~~~l~~~s~-------dg~v~v~~~~~~~~~~~~~-~~~~h~~~v~~~~~~--~~~~~s~s~dg~v~~wd~ 142 (343)
...++|. +++++++... +|.|..|+........... ......+.-..+.+. ++.++.+...+.+...|.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 4566777 6676665443 3567777765433222111 110112234678887 677777777777888887
Q ss_pred CCCceEEEEEc-CCCc---cceEEEEeCC-CCEEEEEeCC-------------CcEEEEEccccCCCCCeeEEecccCCC
Q 019258 143 IGGGEFKRVYD-GNGL---VGFNCVKWAS-PTEFVTGGFG-------------YGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 143 ~~~~~~~~~~~-~~~~---~~v~~~~~~~-~~~l~t~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
+... ..... .... .....+.+.+ ++..++-... ..=++|-+.. .++ ...+...-
T Consensus 100 ~g~~--~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~-~~~~~~~~--- 171 (314)
T d1pjxa_ 100 DGTF--EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQ-MIQVDTAF--- 171 (314)
T ss_dssp TSCE--EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSC-EEEEEEEE---
T ss_pred CCcE--EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee--cCc-eeEeeCCc---
Confidence 7652 22211 1111 1356788888 5555553211 0113333322 122 22221111
Q ss_pred CCcccCeEEEEEcCCCC----eEEEEEecCCcEEEEEccCCceeee---eecCCCCcccccCCccccEEEEEEeecCCCC
Q 019258 205 GKASGMIHSVDIHPSRK----HTCLAGGSSGTVFAWDLRWQQQSIV---LSGVGTGEAVTHSLSESEVWEVQYDCHTKSS 277 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~----~~~~sg~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 277 (343)
..-+.++|+|++. .++++-+..+.|..||+........ +.... ..+....-.|++..++.
T Consensus 172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~-------~~~~~~pdGiavD~~Gn-- 238 (314)
T d1pjxa_ 172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-------GTHEGGADGMDFDEDNN-- 238 (314)
T ss_dssp ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-------CCSSCEEEEEEEBTTCC--
T ss_pred ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc-------ccccccceeeEEecCCc--
Confidence 2356788888653 4667777889999999865432211 11000 11223456788988776
Q ss_pred cCCCCCccceEEEecCCeEEEEecCCC-cccccccc-cccceeeecCCCCC-eeEEccCCceEEEEe
Q 019258 278 NISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEP-CAINSFDIDPQNPS-DVICSLEWESIAIVS 341 (343)
Q Consensus 278 ~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~-~~i~s~~~~~~~~~-~l~~~~~~~~i~~~~ 341 (343)
..++....+.|++++.... .......+ ....++++.| +++ ..|+.+.++.|+.++
T Consensus 239 --------lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~ 296 (314)
T d1pjxa_ 239 --------LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp --------EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred --------EEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEE
Confidence 4556667889999987533 33323333 4578899988 444 456667778888765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.45 E-value=0.02 Score=46.89 Aligned_cols=217 Identities=11% Similarity=-0.019 Sum_probs=127.8
Q ss_pred EEcc--CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEEc
Q 019258 77 LSTS--HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT-GSECVSVGEDGRVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 77 v~~~--~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~ 153 (343)
..|. ++.++.+--..+.|.-|+...++.. ... ....+.++.+. ...++.++.+| +..+|..+++ ...+..
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~----~~~~~~~i~~~~dg~l~va~~~g-l~~~d~~tg~-~~~l~~ 95 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKT-VHA----LPFMGSALAKISDSKQLIASDDG-LFLRDTATGV-LTLHAE 95 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE----CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCC-EEEEEC
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE----CCCCcEEEEEecCCCEEEEEeCc-cEEeecccce-eeEEee
Confidence 3455 3445555556778888887654322 221 12356778776 55566666665 8899998874 444332
Q ss_pred CC---CccceEEEEeCC-CCEEEEEeC----CCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 154 GN---GLVGFNCVKWAS-PTEFVTGGF----GYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 154 ~~---~~~~v~~~~~~~-~~~l~t~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
.. ....+..+...+ ++..++... .+.-.+|.+.. ++ +..+.... ..-+.++++|++..+++
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~---g~-~~~~~~~~-------~~~Ng~~~s~d~~~l~~ 164 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---GK-VTKLFADI-------SIPNSICFSPDGTTGYF 164 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---TE-EEEEEEEE-------SSEEEEEECTTSCEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC---Cc-EEEEeecc-------CCcceeeecCCCceEEE
Confidence 21 222578888888 544444322 23445666655 32 22222111 44678999999988888
Q ss_pred EEecCCcEEEEEccCCce-----eeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEe
Q 019258 226 AGGSSGTVFAWDLRWQQQ-----SIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVE 300 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~ 300 (343)
+.+..+.|..+++..... +..+.. ...-.+....+++..++. ..++.-..|.|..++
T Consensus 165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~--------~~~~~g~pdG~~vD~~Gn----------lWva~~~~g~V~~~d 226 (295)
T d2ghsa1 165 VDTKVNRLMRVPLDARTGLPTGKAEVFID--------STGIKGGMDGSVCDAEGH----------IWNARWGEGAVDRYD 226 (295)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEE--------CTTSSSEEEEEEECTTSC----------EEEEEETTTEEEEEC
T ss_pred eecccceeeEeeecccccccccceEEEec--------cCcccccccceEEcCCCC----------EEeeeeCCCceEEec
Confidence 888899999998743211 111110 022345577888887775 333444567899999
Q ss_pred cCCCcccccccc-cccceeeecCCCCCeeE
Q 019258 301 QGEEPFELLAEP-CAINSFDIDPQNPSDVI 329 (343)
Q Consensus 301 ~~~~~~~~~~~~-~~i~s~~~~~~~~~~l~ 329 (343)
...+......-| ..+.+++|-+.+.+.|.
T Consensus 227 p~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 227 TDGNHIARYEVPGKQTTCPAFIGPDASRLL 256 (295)
T ss_dssp TTCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred CCCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence 876555555544 35788888754444443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.51 E-value=0.14 Score=40.85 Aligned_cols=193 Identities=8% Similarity=-0.040 Sum_probs=110.6
Q ss_pred ccCeEEEEec--CCE-EEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC--CCEEEEEeCCCcEEEEEccccC
Q 019258 115 VGPISGVDLT--GSE-CVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAG 189 (343)
Q Consensus 115 ~~~v~~~~~~--~~~-~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~ 189 (343)
...+.+++++ .+. +.+-..++.|...+++... ...+.... ...+.++++.. .+...+-...+.|.+.++..
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~-~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg-- 110 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-- 110 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEec-cccccEEEEeccCCeEEEeccCCCEEEEEecCC--
Confidence 3456778777 444 4455677888888887653 34444322 12578888876 44445556688999999865
Q ss_pred CCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecC--CcEEEEEccCCceeeeeecCCCCcccccCCccccEEE
Q 019258 190 SGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSS--GTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWE 267 (343)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 267 (343)
.. ...+.... . .....++++|....++.+-... +.|..-++... ....+. ...-.....
T Consensus 111 -~~-~~~l~~~~--l----~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~----------~~~~~~P~g 171 (263)
T d1npea_ 111 -TQ-RRVLFDTG--L----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILA----------QDNLGLPNG 171 (263)
T ss_dssp -CS-CEEEECSS--C----SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEE----------CTTCSCEEE
T ss_pred -ce-EEEEeccc--c----cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceeee----------eecccccce
Confidence 22 22332221 1 4588999999887777664332 33544565432 222222 112245578
Q ss_pred EEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCcc-cccccccccceeeecCCCCCeeEEc-cCCceEEEEeC
Q 019258 268 VQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPF-ELLAEPCAINSFDIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 268 v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~-~~~~~~~~i~s~~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
|++++.+.. ..++-...++|...+...... .+........++++.. ++|.-+ ...+.|+..++
T Consensus 172 laiD~~~~~---------lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~---~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 172 LTFDAFSSQ---------LCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG---KNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp EEEETTTTE---------EEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET---TEEEEEETTTTEEEEEET
T ss_pred EEEeecCcE---------EEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEEC---CEEEEEECCCCEEEEEEC
Confidence 999987763 334546778888887754322 2332212224778775 444443 24456766554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.43 E-value=0.17 Score=41.01 Aligned_cols=176 Identities=10% Similarity=-0.054 Sum_probs=102.9
Q ss_pred CCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeE
Q 019258 133 EDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIH 212 (343)
Q Consensus 133 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 212 (343)
..+.|.-||..+++ . ..+.... .+.++.+.+...++.++.+ .|..+|..+ ++ +..+....... ....++
T Consensus 38 ~~~~I~r~d~~~g~-~-~~~~~~~--~~~~i~~~~dg~l~va~~~-gl~~~d~~t---g~-~~~l~~~~~~~--~~~~~n 106 (295)
T d2ghsa1 38 LERELHELHLASGR-K-TVHALPF--MGSALAKISDSKQLIASDD-GLFLRDTAT---GV-LTLHAELESDL--PGNRSN 106 (295)
T ss_dssp GGTEEEEEETTTTE-E-EEEECSS--CEEEEEEEETTEEEEEETT-EEEEEETTT---CC-EEEEECSSTTC--TTEEEE
T ss_pred CCCEEEEEECCCCe-E-EEEECCC--CcEEEEEecCCCEEEEEeC-ccEEeeccc---ce-eeEEeeeecCC--Ccccce
Confidence 56778888888873 3 3333333 4778887775566666654 588899877 33 33333222111 114588
Q ss_pred EEEEcCCCCeEEEEEec---CCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEE
Q 019258 213 SVDIHPSRKHTCLAGGS---SGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMF 289 (343)
Q Consensus 213 ~v~~~p~~~~~~~sg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s 289 (343)
.+.+.|+|...+.+-.. .+.-.+|.+..++. ..+. . .-..-+.+.|++++.. .+++
T Consensus 107 d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~-~~~~----------~-~~~~~Ng~~~s~d~~~---------l~~~ 165 (295)
T d2ghsa1 107 DGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLF----------A-DISIPNSICFSPDGTT---------GYFV 165 (295)
T ss_dssp EEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEE----------E-EESSEEEEEECTTSCE---------EEEE
T ss_pred eeEECCCCCEEEEeccccccccceeEeeecCCcE-EEEe----------e-ccCCcceeeecCCCce---------EEEe
Confidence 89999998744433221 23345565554322 2222 1 1234578999999875 5667
Q ss_pred EecCCeEEEEecCCCcc------cccc----cccccceeeecCCCCCeeEEccCCceEEEEe
Q 019258 290 CSEDGILAVVEQGEEPF------ELLA----EPCAINSFDIDPQNPSDVICSLEWESIAIVS 341 (343)
Q Consensus 290 ~s~dg~i~~~~~~~~~~------~~~~----~~~~i~s~~~~~~~~~~l~~~~~~~~i~~~~ 341 (343)
-+..+.|+.++.+.... .... .......+.++. +|..-+|....+.|..++
T Consensus 166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEEC
T ss_pred ecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEec
Confidence 77888998887542211 1111 123456777876 557777766667788776
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.012 Score=51.66 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=83.4
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEE--------ecCCcEE
Q 019258 163 VKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAG--------GSSGTVF 234 (343)
Q Consensus 163 ~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg--------~~dg~v~ 234 (343)
..|.+...++.-..+|.|.+||+.. ++.-.-+....-.. ..+....++|++..+++.. +..+.+.
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~---~~~~~l~~~~~~~~----~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~ 94 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVET---NTSTVLIEGKKIES----LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGG---CCCEEEECTTTTTT----TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCC---CCEEEEEcCccccc----cccceeEECCCCCeEEEEEcccceeEeeccccEE
Confidence 3577744555566788999999988 44322222221111 3467788999998876643 3457889
Q ss_pred EEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-cccccccc-
Q 019258 235 AWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE-PFELLAEP- 312 (343)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~-~~~~~~~~- 312 (343)
++|+.++.. ..+.. . ......+....|+|++. .++... ++.|++.+.... ...+....
T Consensus 95 i~d~~~~~~-~~l~~-~-------~~~~~~l~~~~wSPDG~----------~iafv~-~~nl~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 95 LSKIPHGDP-QSLDP-P-------EVSNAKLQYAGWGPKGQ----------QLIFIF-ENNIYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp EEESSSCCC-EECCC-T-------TCCSCCCSBCCBCSSTT----------CEEEEE-TTEEEEESSSSSCCEEEECCCB
T ss_pred EEEccCCce-eeccC-c-------cCCccccceeeeccCCc----------eEEEEe-cceEEEEecCCCceEEEecccC
Confidence 999987542 22210 0 12234455688999988 566554 567777664322 22121111
Q ss_pred ------------------cccceeeecCCCCCeeEEcc
Q 019258 313 ------------------CAINSFDIDPQNPSDVICSL 332 (343)
Q Consensus 313 ------------------~~i~s~~~~~~~~~~l~~~~ 332 (343)
..-.++.|+| +|++|+...
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~ 191 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAA 191 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEE
T ss_pred cceeeccccchhhhhhhccccceEEECC-CCCeEEEEE
Confidence 1124778999 567777754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.058 Score=47.18 Aligned_cols=154 Identities=6% Similarity=-0.054 Sum_probs=87.9
Q ss_pred Ecc-CCCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEe---------CCCcEEEEECCCC
Q 019258 78 STS-HQSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVG---------EDGRVNLVSVIGG 145 (343)
Q Consensus 78 ~~~-~~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s---------~dg~v~~wd~~~~ 145 (343)
.|. ++. ++.-..+|.|.+|++..+....+..........+....++ ++.++... ..+.+.++|+.++
T Consensus 23 ~W~~~~~-~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTE-FIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSC-BCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCc-EEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 466 433 3344567889999998554433333322333456666777 67766553 3567889999887
Q ss_pred ceEEEEEcCC-CccceEEEEeCC-CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCc------------ccCe
Q 019258 146 GEFKRVYDGN-GLVGFNCVKWAS-PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKA------------SGMI 211 (343)
Q Consensus 146 ~~~~~~~~~~-~~~~v~~~~~~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~i 211 (343)
. ...+.... ....+....|+| +..++-.. ++.|.+.+... +..+....... ....- .+.-
T Consensus 102 ~-~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~---~~~~~lt~~g~-~~~i~nG~~d~vyeee~~~~~ 175 (465)
T d1xfda1 102 D-PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG---KQAIRVVSTGK-EGVIYNGLSDWLYEEEILKTH 175 (465)
T ss_dssp C-CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS---SCCEEEECCCB-TTTEEEEECCHHHHHTTSSSS
T ss_pred c-eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC---CceEEEecccC-cceeeccccchhhhhhhcccc
Confidence 4 44432221 111456688999 66666554 67788888765 33332221110 00000 0112
Q ss_pred EEEEEcCCCCeEEEEEecCCcEEEEEc
Q 019258 212 HSVDIHPSRKHTCLAGGSSGTVFAWDL 238 (343)
Q Consensus 212 ~~v~~~p~~~~~~~sg~~dg~v~iwd~ 238 (343)
..+.|+|+|..++..-..+..|..+.+
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ceEEECCCCCeEEEEEecccccceeec
Confidence 578899999988766555666665544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.50 E-value=0.61 Score=39.59 Aligned_cols=203 Identities=14% Similarity=0.061 Sum_probs=111.2
Q ss_pred EEEcc----CCCeEEEE-cCCCcEEEEEccCceeeeeeccCCccccCeEEEEec----CCEEEEEeCCC-----------
Q 019258 76 SLSTS----HQSLVAAS-TLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT----GSECVSVGEDG----------- 135 (343)
Q Consensus 76 ~v~~~----~~~~l~~~-s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~s~s~dg----------- 135 (343)
.+.|. ++++|++. ..++.|.+-|+...+...+.... ....+..+... ..+++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~ 166 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 166 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC--CCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence 45554 45555554 46889999999866654444332 23345555543 45666665532
Q ss_pred -------cEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeCC------------------------------
Q 019258 136 -------RVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGFG------------------------------ 177 (343)
Q Consensus 136 -------~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~d------------------------------ 177 (343)
.+...|..+.+...++.... ....+.+++ +..+++.+.+
T Consensus 167 d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av 243 (459)
T d1fwxa2 167 DVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 243 (459)
T ss_dssp CGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred chhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence 35678888765333443322 355677777 6666666543
Q ss_pred --------CcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeec
Q 019258 178 --------YGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSG 249 (343)
Q Consensus 178 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~ 249 (343)
+.+.+-|.+.......+..+... ...+.+.++|+|.+++++|--+.++.++|+++......-.
T Consensus 244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp--------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~- 314 (459)
T d1fwxa2 244 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA--------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN- 314 (459)
T ss_dssp HHTCSEEETTEEEEECSGG--CSSEEEEEEE--------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-
T ss_pred hcCCcEEeCCceeecccccCCcceeEEEecC--------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc-
Confidence 22344444330001111112111 3366889999999999999999999999997532211000
Q ss_pred CCCCccc-ccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecC
Q 019258 250 VGTGEAV-THSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 250 ~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
....+.+ .+....-.-..-+|+..+. ...|.--|..|--|+..
T Consensus 315 ~~~~~~~~~e~elglgPLht~fd~~g~----------aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 315 ADPRSAVVAEPELGLGPLHTAFDGRGN----------AYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp C-GGGGEEECCBCCSCEEEEEECTTSE----------EEEEETTTTEEEEEEHH
T ss_pred CCccccEEeecccCcCccccccCCCce----------EEEEeeccceEEEEecc
Confidence 0000000 0011112235566776543 34566788889889853
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=93.64 E-value=1.7 Score=36.53 Aligned_cols=167 Identities=6% Similarity=-0.041 Sum_probs=83.3
Q ss_pred ceEEEEeCC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEecCC----c
Q 019258 159 GFNCVKWAS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSG----T 232 (343)
Q Consensus 159 ~v~~~~~~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg----~ 232 (343)
.+.+|+++| ++.+.+++..+-|.. ... .++.-..+.............+.+|+++|..+.++..+..+. .
T Consensus 13 ~~~~i~~~P~~~~~~ya~~~~gGv~~--S~d--gG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 13 YITGIVAHPKTKDLLYARTDIGGAYR--WDA--GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEE--EET--TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEE--EEC--CCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 699999999 667777777665532 222 234333322111001111145889999998877776654321 1
Q ss_pred EEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCccc-----
Q 019258 233 VFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEPFE----- 307 (343)
Q Consensus 233 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~~~----- 307 (343)
..+|--..+..-............ .......+..|.++|.++. .++.++.++.|+.=.-.....+
T Consensus 89 ~gi~~S~DgG~TW~~~~~~~~~~~-~~~~~~~~~~i~v~P~~~~---------~v~~~~~~~gl~~S~D~G~tW~~~~~~ 158 (427)
T d2ebsa1 89 AAFYVSEDRGQSFTIYESPFPMGA-NDMGRNNGERLAVNPFNSN---------EVWMGTRTEGIWKSSDRAKTWTNVTSI 158 (427)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCT-TSTTTTSCCCEEECTTCTT---------CEEEECSSSCEEEESSTTSSCEECTTS
T ss_pred ccEEEeCCCCccceeecCCcccCc-cccCccceeEEEECCCccC---------cccccccccceeeecCCCceeeecccC
Confidence 234432222222211110000000 0111234557889998886 7788877776654211111111
Q ss_pred --ccccccccceeeecCCCCCeeEEcc-CCceEEE
Q 019258 308 --LLAEPCAINSFDIDPQNPSDVICSL-EWESIAI 339 (343)
Q Consensus 308 --~~~~~~~i~s~~~~~~~~~~l~~~~-~~~~i~~ 339 (343)
.......+..+.++|.++..|.++. ....|+.
T Consensus 159 ~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~ 193 (427)
T d2ebsa1 159 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV 193 (427)
T ss_dssp SCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred cccccCCccceEEEecccccceeeeeeeeccccee
Confidence 1111234678888887666665443 3345664
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=1.3 Score=34.75 Aligned_cols=214 Identities=9% Similarity=0.003 Sum_probs=118.5
Q ss_pred CeeEEEcc-CCCeEE-EEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEE-EEEeCCCcEEEEECCCCce
Q 019258 73 RISSLSTS-HQSLVA-ASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSEC-VSVGEDGRVNLVSVIGGGE 147 (343)
Q Consensus 73 ~v~~v~~~-~~~~l~-~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-~s~s~dg~v~~wd~~~~~~ 147 (343)
.+.+++|. ..+.++ +-..++.|+..++.......+... ......+++++ ++.+ .+-...+.|.+.+++...
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~---~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~- 112 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe---ccccccEEEEeccCCeEEEeccCCCEEEEEecCCce-
Confidence 46778887 445444 445677888887764333222221 12345666655 5544 555677899999987653
Q ss_pred EEEEEcCCCccceEEEEeCC-CCEEEEEe-CCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEE
Q 019258 148 FKRVYDGNGLVGFNCVKWAS-PTEFVTGG-FGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCL 225 (343)
Q Consensus 148 ~~~~~~~~~~~~v~~~~~~~-~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~ 225 (343)
...+....- .....++.+| ...+.-.. ..+.-+|+-... .+.....+.... . .....+++++.+..++.
T Consensus 113 ~~~l~~~~l-~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~--dG~~~~~i~~~~----~--~~P~glaiD~~~~~lYw 183 (263)
T d1npea_ 113 RRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM--DGTNRRILAQDN----L--GLPNGLTFDAFSSQLCW 183 (263)
T ss_dssp CEEEECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEET--TSCCCEEEECTT----C--SCEEEEEEETTTTEEEE
T ss_pred EEEEecccc-cCCcEEEEecccCcEEEeecCCCCcEEEEecC--CCCCceeeeeec----c--cccceEEEeecCcEEEE
Confidence 333433322 2588999988 55544333 233445654444 222222332111 1 45789999988777877
Q ss_pred EEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCC-
Q 019258 226 AGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEE- 304 (343)
Q Consensus 226 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~- 304 (343)
+-...+.|...|+.... ...+. ..... -.+|++. +.. ..++-...++|...+....
T Consensus 184 ~d~~~~~I~~~~~~g~~-~~~v~----------~~~~~-P~~lav~--~~~---------lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 184 VDAGTHRAECLNPAQPG-RRKVL----------EGLQY-PFAVTSY--GKN---------LYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp EETTTTEEEEEETTEEE-EEEEE----------ECCCS-EEEEEEE--TTE---------EEEEETTTTEEEEEETTTTE
T ss_pred EeCCCCEEEEEECCCCC-eEEEE----------CCCCC-cEEEEEE--CCE---------EEEEECCCCEEEEEECCCCc
Confidence 77778899999986532 22332 11111 2467775 332 3455556778888876422
Q ss_pred cc-ccccc-ccccceeeecC
Q 019258 305 PF-ELLAE-PCAINSFDIDP 322 (343)
Q Consensus 305 ~~-~~~~~-~~~i~s~~~~~ 322 (343)
.. .+... ......+.+.+
T Consensus 241 ~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 241 EMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEEECCSSCCCCCCEEEEC
T ss_pred cceEECCCCCCCcceEEEeC
Confidence 22 22222 23455666554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=1.3 Score=34.77 Aligned_cols=213 Identities=8% Similarity=-0.023 Sum_probs=116.5
Q ss_pred CcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEE-EEeCCCcEEEEECCCCc---eEEEEEcCCCccceEEEEe
Q 019258 92 GSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECV-SVGEDGRVNLVSVIGGG---EFKRVYDGNGLVGFNCVKW 165 (343)
Q Consensus 92 g~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~-s~s~dg~v~~wd~~~~~---~~~~~~~~~~~~~v~~~~~ 165 (343)
..|+.+++...+...+.. ....+.+++++ .+.+. +=..++.|.-.+++... ....+.. .....+.++++
T Consensus 10 ~~I~~~~l~~~~~~~~~~----~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~p~glAv 84 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAV 84 (266)
T ss_dssp SSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEE
T ss_pred CeEEEEECCCCcceeeeC----CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCCCCcceEEE
Confidence 358888887544333322 33456788887 45444 44456667766664311 1222222 22224666776
Q ss_pred CC--CCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCCCCcccCeEEEEEcCCCCeEEEEEe-cCCcEEEEEccCCc
Q 019258 166 AS--PTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQGKASGMIHSVDIHPSRKHTCLAGG-SSGTVFAWDLRWQQ 242 (343)
Q Consensus 166 ~~--~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~-~dg~v~iwd~~~~~ 242 (343)
.+ .+...+-...++|.+.++.. .....+..... .....++++|....++.+.. ..+.|...++.. .
T Consensus 85 D~~~~~lY~~d~~~~~I~v~~~~g----~~~~~~~~~~~------~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-s 153 (266)
T d1ijqa1 85 DWIHSNIYWTDSVLGTVSVADTKG----VKRKTLFRENG------SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-V 153 (266)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTS----SSEEEEEECTT------CCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred eeccceEEEEecCCCEEEeEecCC----ceEEEEEcCCC------CCcceEEEEcccCeEEEeccCCCcceeEeccCC-C
Confidence 65 55666666788999999865 32223222111 45789999997777776643 345677777754 2
Q ss_pred eeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceEEEecCCeEEEEecCCCc-ccccccc---ccccee
Q 019258 243 QSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAMFCSEDGILAVVEQGEEP-FELLAEP---CAINSF 318 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~s~s~dg~i~~~~~~~~~-~~~~~~~---~~i~s~ 318 (343)
....+. ...-....+|++++.+.. ..++-+..++|...+..... ..+.... ....++
T Consensus 154 ~~~~l~----------~~~~~~p~gl~iD~~~~~---------lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~l 214 (266)
T d1ijqa1 154 DIYSLV----------TENIQWPNGITLDLLSGR---------LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (266)
T ss_dssp CEEEEE----------CSSCSCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred ceeccc----------ccccceeeEEEeeccccE---------EEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEE
Confidence 233333 112345678999987763 33344667788887764332 2222221 223467
Q ss_pred eecCCCCCeeEEc-cCCceEEEEeC
Q 019258 319 DIDPQNPSDVICS-LEWESIAIVSR 342 (343)
Q Consensus 319 ~~~~~~~~~l~~~-~~~~~i~~~~~ 342 (343)
++.. .+|..+ ..++.|+.+++
T Consensus 215 av~~---~~ly~td~~~~~I~~~~~ 236 (266)
T d1ijqa1 215 AVFE---DKVFWTDIINEAIFSANR 236 (266)
T ss_dssp EEET---TEEEEEETTTTEEEEEET
T ss_pred EEEC---CEEEEEECCCCeEEEEEC
Confidence 7775 344443 34567766553
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=91.61 E-value=1 Score=38.09 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=65.1
Q ss_pred cCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcCCCCCccceE
Q 019258 209 GMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNISSSRVLPAM 288 (343)
Q Consensus 209 ~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~~~~~~~l~ 288 (343)
+.|.+|+++|..++++.+|+..|-|..-+ ........+..... ........+.+|+++|.++. .++
T Consensus 12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~--dgG~tW~~~~~~~~---~~~~~~~~~~~iavdp~np~---------~vy 77 (427)
T d2ebsa1 12 GYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIE---AQDMNIMGTESIALDPNNPD---------RLY 77 (427)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCC---GGGGGGCSEEEEEEETTEEE---------EEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEEE--CCCCceEECCCCCC---CCCcccccEeEEEECCCCCC---------EEE
Confidence 77999999999888888888876654332 22222222100000 00123446889999998775 455
Q ss_pred EEecC--C--eEEEEecCCC-cccc-cc--------c--ccccceeeecCCCCCeeEEccCCceEEEE
Q 019258 289 FCSED--G--ILAVVEQGEE-PFEL-LA--------E--PCAINSFDIDPQNPSDVICSLEWESIAIV 340 (343)
Q Consensus 289 s~s~d--g--~i~~~~~~~~-~~~~-~~--------~--~~~i~s~~~~~~~~~~l~~~~~~~~i~~~ 340 (343)
.+..+ + ...+|..... ..+. .. . ......+.++|.+...|.+++.++.|+..
T Consensus 78 ~~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S 145 (427)
T d2ebsa1 78 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKS 145 (427)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEEE
T ss_pred EEeccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceeee
Confidence 44321 1 1123332211 1110 00 0 12356799999877888888777666643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.82 E-value=3.2 Score=33.19 Aligned_cols=196 Identities=15% Similarity=0.081 Sum_probs=112.5
Q ss_pred CCCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEccCCCeEEEEcCCCcEEEEEccC-ceeeeeecc-
Q 019258 33 LSKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTSHQSLVAASTLSGSLHVLSSAM-QVLLSVDEN- 110 (343)
Q Consensus 33 ~~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~s~dg~v~v~~~~~-~~~~~~~~~- 110 (343)
..+.+|.=+.. .|++++++. ...++....+.+|.=.+|.+++.|+..+.+ .|+-|++.. .++..+...
T Consensus 73 ~~~IiALrag~------~LQiFnlet---K~klks~~~~e~VvfWkWis~~~L~lVT~t-aVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 73 ASKVIALKAGK------TLQIFNIEM---KSKMKAHTMTDDVTFWKWISLNTVALVTDN-AVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp SSSEEEEEETT------EEEEEETTT---TEEEEEEECSSCCCEEEESSSSEEEEECSS-EEEEEESSSSCCCEEEEECC
T ss_pred CCcEEEEecCC------eEEEEehhH---hhhhceEEcCCCcEEEEecCCCEEEEEcCC-ceEEEcccCCCCchhhhhhc
Confidence 55666655422 488999965 334666777788988899877777666544 699999963 233333321
Q ss_pred CCccccCeEEEEec--CCEEEEEe---C----CCcEEEEECCCCceEEEEEcCCCccceEEEEeCC----CCEEEEEe--
Q 019258 111 SGFHVGPISGVDLT--GSECVSVG---E----DGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS----PTEFVTGG-- 175 (343)
Q Consensus 111 ~~~h~~~v~~~~~~--~~~~~s~s---~----dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~t~~-- 175 (343)
...-...|-....+ .++++..| . .|.+.||..+.+ ..+.+++|.. ....+.... ...|+.+.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~--~sQ~ieGhaa-~F~~~~~~g~~~~~~lf~fa~r~ 219 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAA-SFAQFKMEGNAEESTLFCFAVRG 219 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEE-EEEEECCTTCSSCEEEEEEEEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC--cCccccceee-eeEEEEcCCCCCCceEEEEEECC
Confidence 11112345555555 55555433 2 366789998876 4556676654 333443322 12233222
Q ss_pred -CCCcEEEEEccccCCCCCee-----EEe-cccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeee
Q 019258 176 -FGYGLQWWDLRRAGSGGPVL-----QFK-GNFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIV 246 (343)
Q Consensus 176 -~d~~i~iwd~~~~~~~~~~~-----~~~-~~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~ 246 (343)
..+++++-++.....+.+.. .+. ..+. ..+.--++..++.- .++..-+.-|.|.+||+.++.....
T Consensus 220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea----~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~ 292 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA----QNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM 292 (327)
T ss_dssp TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC----TTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEEEEcCCCccCCCCCcceeEEEECCccc----cCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEE
Confidence 24688888886511111211 111 1111 11445677777764 4556678999999999998755444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=3.7 Score=32.02 Aligned_cols=215 Identities=7% Similarity=-0.045 Sum_probs=116.3
Q ss_pred eeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEE-cCCCcEEEEEccCcee---eeeeccCCccccCe--EEEEe
Q 019258 51 LETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAAS-TLSGSLHVLSSAMQVL---LSVDENSGFHVGPI--SGVDL 123 (343)
Q Consensus 51 l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~-s~dg~v~v~~~~~~~~---~~~~~~~~~h~~~v--~~~~~ 123 (343)
|+-.++....... ..+....+.++.|. ..+.|+-+ ...+.|.-.++..... ....... ....+ .+++|
T Consensus 12 I~~~~l~~~~~~~---~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~--~~~~p~glAvD~ 86 (266)
T d1ijqa1 12 VRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQAPDGLAVDW 86 (266)
T ss_dssp EEEEETTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--SCSCCCEEEEET
T ss_pred EEEEECCCCccee---eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC--CCCCcceEEEee
Confidence 5556664432221 12344567889887 55555544 4566676666542111 1111111 11223 34555
Q ss_pred c-CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCC-CCEEEEEeC--CCcEEEEEccccCCCCCeeEEec
Q 019258 124 T-GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWAS-PTEFVTGGF--GYGLQWWDLRRAGSGGPVLQFKG 199 (343)
Q Consensus 124 ~-~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~ 199 (343)
. ++...+-...++|.+.+++... .......... ....++.+| ...+.-... .+.|.-.++. +.....+..
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~-~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d----Gs~~~~l~~ 160 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN----GVDIYSLVT 160 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETT----SCCEEEEEC
T ss_pred ccceEEEEecCCCEEEeEecCCce-EEEEEcCCCC-CcceEEEEcccCeEEEeccCCCcceeEeccC----CCceecccc
Confidence 5 5555666777899999998764 3333332222 578889888 555554433 3345444442 333444432
Q ss_pred ccCCCCCcccCeEEEEEcCCCCeEEEEEecCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEeecCCCCcC
Q 019258 200 NFGSQGKASGMIHSVDIHPSRKHTCLAGGSSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYDCHTKSSNI 279 (343)
Q Consensus 200 ~~~~~~~~~~~i~~v~~~p~~~~~~~sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 279 (343)
.. . .....+++++.+..++.+-...+.|...|+........... ........+|++.. ..
T Consensus 161 ~~----~--~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~---------~~~~~~p~~lav~~--~~--- 220 (266)
T d1ijqa1 161 EN----I--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---------EKRLAHPFSLAVFE--DK--- 220 (266)
T ss_dssp SS----C--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---------TTTTSSEEEEEEET--TE---
T ss_pred cc----c--ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC---------CCcccccEEEEEEC--CE---
Confidence 21 1 44789999998878888877888999999865332222221 11122345677662 32
Q ss_pred CCCCccceEEEecCCeEEEEecC
Q 019258 280 SSSRVLPAMFCSEDGILAVVEQG 302 (343)
Q Consensus 280 ~~~~~~~l~s~s~dg~i~~~~~~ 302 (343)
..++-..++.|+..+..
T Consensus 221 ------ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 221 ------VFWTDIINEAIFSANRL 237 (266)
T ss_dssp ------EEEEETTTTEEEEEETT
T ss_pred ------EEEEECCCCeEEEEECC
Confidence 45555677888777653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=89.44 E-value=3.5 Score=31.57 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCcEEEEEccCceeeeeeccCCccccCeEEEEec--CCEEEEEeC-CC-----cEEEEECCCCceEEEEEc
Q 019258 82 QSLVAASTLSGSLHVLSSAMQVLLSVDENSGFHVGPISGVDLT--GSECVSVGE-DG-----RVNLVSVIGGGEFKRVYD 153 (343)
Q Consensus 82 ~~~l~~~s~dg~v~v~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~-dg-----~v~~wd~~~~~~~~~~~~ 153 (343)
++.++-. .+|.|.++++...+...+. .+.+.+....|+ |+.|+-... ++ .|.+++..++. ..++..
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt----~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~-~~~lt~ 85 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTRKIV----SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITY 85 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEEEEE----CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCC
T ss_pred CCEEEEE-eCCcEEEEECCCCCEEEEe----cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc-eEEeee
Confidence 4555433 4456877788765544443 245567888898 888875532 22 36667777763 444322
Q ss_pred CCC-----ccceEEEEeCC-CCEEEEE
Q 019258 154 GNG-----LVGFNCVKWAS-PTEFVTG 174 (343)
Q Consensus 154 ~~~-----~~~v~~~~~~~-~~~l~t~ 174 (343)
... ........|+| ++.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 86 FSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred cCCCccCccccccccccCCCCCEEEEE
Confidence 211 11356678888 5555544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.99 E-value=5.8 Score=30.20 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=47.3
Q ss_pred CCeEEEEeecCCCCCCceeeeeCCCCCCCCCCccCCCCCCeeEEEcc-CCCeEEEEcC-CC-----cEEEEEccCceeee
Q 019258 34 SKLAVLAIYDTDADSPSLETHSISLPASLTPHSQWTPPTRISSLSTS-HQSLVAASTL-SG-----SLHVLSSAMQVLLS 106 (343)
Q Consensus 34 ~~~l~t~s~D~~~~~~~l~~w~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~s~-dg-----~v~v~~~~~~~~~~ 106 (343)
++.+|-.+.+ + ||+.++.+... ......++.+....|+ +++.|+-... ++ .|.+++....+...
T Consensus 12 G~~v~f~~~~-d-----l~~~d~~~g~~---~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 12 GDRIIFVCCD-D-----LWEHDLKSGST---RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp TTEEEEEETT-E-----EEEEETTTCCE---EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCC-c-----EEEEECCCCCE---EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 7777755433 2 77778865322 2223456778889999 8887775432 22 35555555444433
Q ss_pred eeccCC---ccccCeEEEEec--CCEEEEE
Q 019258 107 VDENSG---FHVGPISGVDLT--GSECVSV 131 (343)
Q Consensus 107 ~~~~~~---~h~~~v~~~~~~--~~~~~s~ 131 (343)
+..... ..........|+ ++.++..
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred eeecCCCccCccccccccccCCCCCEEEEE
Confidence 321110 011234556666 6666554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.24 E-value=12 Score=29.69 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=79.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEEcCCCccceEEEEeCCCCEEEEEeCCCcEEEEEccccCCCCCeeEEecccCCC
Q 019258 125 GSECVSVGEDGRVNLVSVIGGGEFKRVYDGNGLVGFNCVKWASPTEFVTGGFGYGLQWWDLRRAGSGGPVLQFKGNFGSQ 204 (343)
Q Consensus 125 ~~~~~s~s~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (343)
.+.++.-+ ..++.++|+++..++... ...+ .|.--+|...+.|+-.+ +..|..|++.. ...|...+..+..
T Consensus 74 ~~IiALra-g~~LQiFnletK~klks~-~~~e--~VvfWkWis~~~L~lVT-~taVYHW~~~g--~s~P~k~fdR~~~-- 144 (327)
T d1utca2 74 SKVIALKA-GKTLQIFNIEMKSKMKAH-TMTD--DVTFWKWISLNTVALVT-DNAVYHWSMEG--ESQPVKMFDRHSS-- 144 (327)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEE-ECSS--CCCEEEESSSSEEEEEC-SSEEEEEESSS--SCCCEEEEECCGG--
T ss_pred CcEEEEec-CCeEEEEehhHhhhhceE-EcCC--CcEEEEecCCCEEEEEc-CCceEEEcccC--CCCchhhhhhccc--
Confidence 44444433 568999999998654444 3444 47778888877666665 66799999965 4456655654432
Q ss_pred CCcccCeEEEEEcCCCCeEEEEEe------cCCcEEEEEccCCceeeeeecCCCCcccccCCccccEEEEEEe
Q 019258 205 GKASGMIHSVDIHPSRKHTCLAGG------SSGTVFAWDLRWQQQSIVLSGVGTGEAVTHSLSESEVWEVQYD 271 (343)
Q Consensus 205 ~~~~~~i~~v~~~p~~~~~~~sg~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 271 (343)
.....|-.-..+++..+++++|= -.|.+.+|..... . ...+ ++|.+.--.+.+.
T Consensus 145 -L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~-sQ~i----------eGhaa~F~~~~~~ 204 (327)
T d1utca2 145 -LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V-SQPI----------EGHAASFAQFKME 204 (327)
T ss_dssp -GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-E-EEEE----------CCSEEEEEEECCT
T ss_pred -ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-c-Cccc----------cceeeeeEEEEcC
Confidence 12255778888898888877653 2466888887652 2 2223 5676665555443
|