Citrus Sinensis ID: 019282
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| 224131386 | 332 | predicted protein [Populus trichocarpa] | 0.962 | 0.993 | 0.784 | 1e-157 | |
| 224125538 | 332 | predicted protein [Populus trichocarpa] | 0.959 | 0.990 | 0.794 | 1e-156 | |
| 225451201 | 332 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.984 | 0.759 | 1e-146 | |
| 449449605 | 327 | PREDICTED: uncharacterized protein LOC10 | 0.947 | 0.993 | 0.721 | 1e-143 | |
| 255542410 | 332 | S-adenosylmethionine-dependent methyltra | 0.950 | 0.981 | 0.796 | 1e-142 | |
| 297829022 | 341 | hypothetical protein ARALYDRAFT_317378 [ | 0.938 | 0.944 | 0.726 | 1e-141 | |
| 15229893 | 336 | S-adenosylmethionine-dependent methyltra | 0.938 | 0.958 | 0.729 | 1e-138 | |
| 356496358 | 347 | PREDICTED: uncharacterized protein LOC10 | 0.795 | 0.786 | 0.819 | 1e-135 | |
| 359806112 | 347 | uncharacterized protein LOC100798127 [Gl | 0.760 | 0.752 | 0.842 | 1e-134 | |
| 298204929 | 241 | unnamed protein product [Vitis vinifera] | 0.702 | 1.0 | 0.883 | 1e-126 |
| >gi|224131386|ref|XP_002328526.1| predicted protein [Populus trichocarpa] gi|222838241|gb|EEE76606.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust.
Identities = 269/343 (78%), Positives = 297/343 (86%), Gaps = 13/343 (3%)
Query: 1 MALVTSPTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCPLSSTTTDAANAVRNGA 60
++ VT QKGIVI++P LVL++ +AAI FFLLSSLSTC+CP ++ + N NG
Sbjct: 3 LSTVTYSPAQKGIVISIPTLVLSVLIAAIMLFFLLSSLSTCSCP---SSLQSFNDNNNGG 59
Query: 61 VSDFARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQ 120
D R+ ER SAT+EDIEW++DQI NGLHMQDNVLRKGINPRTRAQQ
Sbjct: 60 --------DGLGEVDRK--ERISATEEDIEWIKDQIQANGLHMQDNVLRKGINPRTRAQQ 109
Query: 121 LQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHIT 180
LQDLIQFKGISHYEG E++NHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAE+S ++
Sbjct: 110 LQDLIQFKGISHYEGPESDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESSRLS 169
Query: 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVR 240
PNS VLEIGCGTLRVG HFIRYL+PE++HCLERDELSLMAAFRYELPSQGLLHKRP+IVR
Sbjct: 170 PNSRVLEIGCGTLRVGSHFIRYLSPEHYHCLERDELSLMAAFRYELPSQGLLHKRPLIVR 229
Query: 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS 300
GEDMDF+KFGS VVYDLIYASAVFLHMPDKLVWVGLERL SKL+PYDGRIFVSHN+KFCS
Sbjct: 230 GEDMDFSKFGSRVVYDLIYASAVFLHMPDKLVWVGLERLVSKLKPYDGRIFVSHNMKFCS 289
Query: 301 RLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSGA 343
RLGGEECTKRLTSLGLEY+GK THDSLLFNHYEIWFEFRRS A
Sbjct: 290 RLGGEECTKRLTSLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA 332
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125538|ref|XP_002319611.1| predicted protein [Populus trichocarpa] gi|222857987|gb|EEE95534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/346 (79%), Positives = 295/346 (85%), Gaps = 17/346 (4%)
Query: 1 MALVT---SPTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCPLSSTTTDAANAVR 57
MAL T SPTQ KGIVI++P LVL++SV AI FFLLSSLSTC+CP S + + N R
Sbjct: 1 MALSTVTYSPTQ-KGIVISIPTLVLSVSVGAIMLFFLLSSLSTCSCPSSLQSFNDNNNGR 59
Query: 58 NGAVSDFARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTR 117
G E D ER SAT+EDIEW+ DQI NGLHMQDNVLRKGINPRTR
Sbjct: 60 GGL------GEVDKK-------ERISATQEDIEWIMDQIQANGLHMQDNVLRKGINPRTR 106
Query: 118 AQQLQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEAS 177
AQQLQDLIQFKGISHYEGL ++NHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAE+S
Sbjct: 107 AQQLQDLIQFKGISHYEGLVSDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESS 166
Query: 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPI 237
H++PNS VLEIGCGTLRVG+HFIRYL PE+FHCLERDELSLMAAFRYELPSQGLLHKRP+
Sbjct: 167 HLSPNSRVLEIGCGTLRVGLHFIRYLVPEHFHCLERDELSLMAAFRYELPSQGLLHKRPL 226
Query: 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK 297
IV+GEDMDF+KFGSGVVYDLIYASAVFLHMPDKLVW GLERL L+PYDG IFVSHNIK
Sbjct: 227 IVKGEDMDFSKFGSGVVYDLIYASAVFLHMPDKLVWAGLERLVGMLKPYDGLIFVSHNIK 286
Query: 298 FCSRLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSGA 343
FCSRLGGEECTKRLTSLGLEY GK THDSLLFNHYEIWFEFRRS A
Sbjct: 287 FCSRLGGEECTKRLTSLGLEYSGKHTHDSLLFNHYEIWFEFRRSKA 332
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451201|ref|XP_002274268.1| PREDICTED: uncharacterized protein LOC100265858 [Vitis vinifera] gi|147804778|emb|CAN76021.1| hypothetical protein VITISV_027070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/333 (75%), Positives = 283/333 (84%), Gaps = 6/333 (1%)
Query: 11 KGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCPLSSTTTDAANAVRNGAVSDFARSEDD 70
KG V TV VLVL++SVAA+F FFLLSSL +C+CP+ + + V +G R
Sbjct: 6 KGGVSTVTVLVLSISVAAVFLFFLLSSLYSCSCPIPPAPSSVGSDVGDGGGGGGGRGGSG 65
Query: 71 SSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQFKGI 130
+ F R S + ED+EWV+ QI NGL MQDNVLRKGINPRTR QQLQDLI+FKGI
Sbjct: 66 A------FEGRISTSAEDVEWVKGQIRVNGLRMQDNVLRKGINPRTRQQQLQDLIEFKGI 119
Query: 131 SHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGC 190
SHYE NHTALPCPGELLVEEHHSNYGEPWAGGRDVFEF+AE+ H++P+S VLEIGC
Sbjct: 120 SHYEEPGEGNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFIAESVHLSPDSRVLEIGC 179
Query: 191 GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250
GTLRVG+HFIRYLNPE++HCLERDELSLMAAFRYELPSQGLL+KRP+IVRGEDMDF++FG
Sbjct: 180 GTLRVGLHFIRYLNPEHYHCLERDELSLMAAFRYELPSQGLLYKRPLIVRGEDMDFSRFG 239
Query: 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310
SGVVYDLIYASAVFLHMPDKLVWVGLERLA+KL+PY+GRIFVSHNIKFCSRLGGEECTKR
Sbjct: 240 SGVVYDLIYASAVFLHMPDKLVWVGLERLANKLKPYEGRIFVSHNIKFCSRLGGEECTKR 299
Query: 311 LTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSGA 343
LTSLGLEY+ K THDSLLFNHYEIWFEFRRS A
Sbjct: 300 LTSLGLEYVAKHTHDSLLFNHYEIWFEFRRSKA 332
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449605|ref|XP_004142555.1| PREDICTED: uncharacterized protein LOC101219568 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/341 (72%), Positives = 280/341 (82%), Gaps = 16/341 (4%)
Query: 1 MALVTSPTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCPLSSTTTDAANAVRNGA 60
MAL +S T KGIVIT PVL+LT +F FF +S+LS+C+CP++ + A NGA
Sbjct: 1 MALWSSSTSPKGIVITFPVLLLTGFAVILFCFFFISNLSSCSCPVTPRIVVSGTAASNGA 60
Query: 61 VSDFARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQ 120
+ K+D++W++DQI NGL M +NVLRKGINPRTRAQQ
Sbjct: 61 ----------------HIGDGVLTNKDDVDWLKDQIKANGLQMHENVLRKGINPRTRAQQ 104
Query: 121 LQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHIT 180
L+DL QFKGISHYEG E N TALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAE SHIT
Sbjct: 105 LEDLRQFKGISHYEGPEDQNRTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEFSHIT 164
Query: 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVR 240
PN+HVLEIGCGTLRVG+HFIRYL ++HCLERDELS+MAAFRYELPSQGLL KRP+IV+
Sbjct: 165 PNAHVLEIGCGTLRVGLHFIRYLKRGHYHCLERDELSMMAAFRYELPSQGLLSKRPLIVK 224
Query: 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS 300
GEDM+F KFGS V+YDLIYASAVFLH+PDKLVWVGLERL++KL+PYDGRIFVSHNIKFCS
Sbjct: 225 GEDMNFNKFGSEVLYDLIYASAVFLHIPDKLVWVGLERLSNKLKPYDGRIFVSHNIKFCS 284
Query: 301 RLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRS 341
RLGGEECTKRLT+LGLEY+GK+THDSLLFNHYEIWFEFRRS
Sbjct: 285 RLGGEECTKRLTNLGLEYLGKRTHDSLLFNHYEIWFEFRRS 325
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542410|ref|XP_002512268.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223548229|gb|EEF49720.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 270/339 (79%), Positives = 300/339 (88%), Gaps = 13/339 (3%)
Query: 5 TSPTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCPLSSTTTDAANAVRNGAVSDF 64
T PTQ KGIVITVPVLVL++SVAAI FFLLSSLS+C+C +SS+++ +++ GA +F
Sbjct: 7 TGPTQ-KGIVITVPVLVLSVSVAAIMLFFLLSSLSSCDCSVSSSSSSSSSPSFGGA--EF 63
Query: 65 ARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDL 124
ER SA+KEDIEWV+DQI NGLHMQDNVLRKGINPRTRAQQLQDL
Sbjct: 64 GEV----------VKERVSASKEDIEWVKDQIRGNGLHMQDNVLRKGINPRTRAQQLQDL 113
Query: 125 IQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSH 184
IQFKGISHYE E+NNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAE++H++P S
Sbjct: 114 IQFKGISHYEEAESNNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESAHLSPISQ 173
Query: 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244
VLEIGCGTLRVG+HFIRYL+P ++HCLERDELSLMAA RYELPSQGLLHKRP+IVRGEDM
Sbjct: 174 VLEIGCGTLRVGLHFIRYLSPGHYHCLERDELSLMAALRYELPSQGLLHKRPLIVRGEDM 233
Query: 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG 304
DF++FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKL+PYDGRIFVSHNIKFCSRLGG
Sbjct: 234 DFSRFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLKPYDGRIFVSHNIKFCSRLGG 293
Query: 305 EECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSGA 343
EECTKRLT+LGLEY+GK THDSLLFNHYEIWFEF+R A
Sbjct: 294 EECTKRLTNLGLEYLGKHTHDSLLFNHYEIWFEFKRFKA 332
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829022|ref|XP_002882393.1| hypothetical protein ARALYDRAFT_317378 [Arabidopsis lyrata subsp. lyrata] gi|297328233|gb|EFH58652.1| hypothetical protein ARALYDRAFT_317378 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/336 (72%), Positives = 278/336 (82%), Gaps = 14/336 (4%)
Query: 7 PTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCP--LSSTTTDAANAVRNGAVSDF 64
P QKG+ +++PVLVL++S AA FF + SS S+C+CP LSS+ DA A G+ D
Sbjct: 15 PAMQKGVFVSMPVLVLSVSFAAAVFFLISSSFSSCSCPESLSSSRNDAVEASVGGSGGDL 74
Query: 65 ARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDL 124
R ER S T+EDIEWVRD I NGLHMQ N LRKGINPRTR QQL DL
Sbjct: 75 ------------RLEERISPTQEDIEWVRDLIRSNGLHMQKNELRKGINPRTRDQQLADL 122
Query: 125 IQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSH 184
Q+KGISHYEG EANNHTALPCPGELLVE+HHSNYGEPWAGGRDVFEFLAE+S++ PNS
Sbjct: 123 KQYKGISHYEGDEANNHTALPCPGELLVEQHHSNYGEPWAGGRDVFEFLAESSNLKPNSR 182
Query: 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244
VLEIGCGTLRVG+HFIRYLNP++FHCLE+DELSLMAA RYELPSQGLLHKRP+IVRG+DM
Sbjct: 183 VLEIGCGTLRVGLHFIRYLNPQHFHCLEKDELSLMAALRYELPSQGLLHKRPLIVRGDDM 242
Query: 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG 304
+F+KFGS YDLIYASAVFLHMPDKLVW GLERL KL+PYDGRIFVSHN+KFCSRLG
Sbjct: 243 EFSKFGSDTTYDLIYASAVFLHMPDKLVWTGLERLVDKLKPYDGRIFVSHNVKFCSRLGQ 302
Query: 305 EECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRR 340
++C+++L SLGLEY+GK+THDSLLFNHYEIWF FRR
Sbjct: 303 DKCSQKLASLGLEYLGKQTHDSLLFNHYEIWFGFRR 338
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229893|ref|NP_187161.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|6729020|gb|AAF27016.1|AC009177_6 hypothetical protein [Arabidopsis thaliana] gi|17979285|gb|AAL49868.1| unknown protein [Arabidopsis thaliana] gi|20259103|gb|AAM14267.1| unknown protein [Arabidopsis thaliana] gi|332640665|gb|AEE74186.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/336 (72%), Positives = 279/336 (83%), Gaps = 14/336 (4%)
Query: 7 PTQQKGIVITVPVLVLTLSVAAIFFFFLLSSLSTCNCP--LSSTTTDAANAVRNGAVSDF 64
P QKGI +++PVLVLT+S A FF L SS S+C+CP LSS+ TDA A G+ D
Sbjct: 10 PAMQKGIFVSMPVLVLTVSFVAAVFFLLSSSFSSCSCPEALSSSPTDAVEASVGGSGGDV 69
Query: 65 ARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDL 124
RF +R S T++DIEWVRD I NGLHMQ N LRKGINPRTR QQL DL
Sbjct: 70 ------------RFEDRISPTQDDIEWVRDLIRSNGLHMQKNELRKGINPRTRDQQLADL 117
Query: 125 IQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSH 184
IQ+KGISHYEG EANNHTALPCPGELLVE+HHSNYGEPWAGGRDVFEFLAE+S + PNS
Sbjct: 118 IQYKGISHYEGDEANNHTALPCPGELLVEQHHSNYGEPWAGGRDVFEFLAESSSLKPNSR 177
Query: 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244
VLEIGCGTLRVG+HFIRYL+P++FHCLE+DELSLMAA RYELPSQGLLHKRP+IVRG+DM
Sbjct: 178 VLEIGCGTLRVGLHFIRYLSPQHFHCLEKDELSLMAALRYELPSQGLLHKRPLIVRGDDM 237
Query: 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG 304
+F+KFGS YDLIYASAVFLHMPDKLVW GLERL +L+PYDGRIFVSHN+KFCSRLG
Sbjct: 238 EFSKFGSDTAYDLIYASAVFLHMPDKLVWTGLERLVDRLKPYDGRIFVSHNVKFCSRLGQ 297
Query: 305 EECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRR 340
++C+++L SLGLEY+GK+THDSLLFNHYEIWF FRR
Sbjct: 298 DKCSQKLASLGLEYLGKQTHDSLLFNHYEIWFGFRR 333
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496358|ref|XP_003517035.1| PREDICTED: uncharacterized protein LOC100787144 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/277 (81%), Positives = 251/277 (90%), Gaps = 4/277 (1%)
Query: 67 SEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQ 126
+ +SSSS+ S R KED+EWV++QI NGLHM DNVLRKGINPRTRAQQL+DL Q
Sbjct: 75 TRKESSSSNIPLSTR----KEDVEWVKNQIQANGLHMHDNVLRKGINPRTRAQQLEDLRQ 130
Query: 127 FKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVL 186
FKGISHYEG +++NHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEAS + +S VL
Sbjct: 131 FKGISHYEGPDSDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASQLRSDSQVL 190
Query: 187 EIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246
EIGCGTLRVG+HFIRYLNPE+FHCLERDELSLMA FRYELP+QGLL+KRP IV+G+DMDF
Sbjct: 191 EIGCGTLRVGLHFIRYLNPEHFHCLERDELSLMAVFRYELPAQGLLYKRPSIVKGDDMDF 250
Query: 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEE 306
++F SG++YDLIYASAVFLHMPDKLVW GLERLASKL+PYDGRIFVSHNIKFCSRLGGEE
Sbjct: 251 SRFDSGIMYDLIYASAVFLHMPDKLVWTGLERLASKLKPYDGRIFVSHNIKFCSRLGGEE 310
Query: 307 CTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSGA 343
CTKRL SLGLEY+GK THDSLLFNHYEIWFEFRRS A
Sbjct: 311 CTKRLASLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA 347
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806112|ref|NP_001241189.1| uncharacterized protein LOC100798127 [Glycine max] gi|255641715|gb|ACU21128.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/261 (84%), Positives = 242/261 (92%)
Query: 83 SATKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQDLIQFKGISHYEGLEANNHT 142
S KED+EWV+DQI NGL M DNVLRKGINPRTRAQQL+D +FKGISHYEG +++NHT
Sbjct: 87 STRKEDVEWVKDQIRANGLQMHDNVLRKGINPRTRAQQLEDFRRFKGISHYEGPDSDNHT 146
Query: 143 ALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRY 202
+LPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEAS + P+S VLEIGCGTLRVG+HFIRY
Sbjct: 147 SLPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASQLRPDSQVLEIGCGTLRVGLHFIRY 206
Query: 203 LNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262
LNPE+FHCLERDELSLMA FRYELP+QGLL+KRP IV+G+DMDF++F SG++YDLIYASA
Sbjct: 207 LNPEHFHCLERDELSLMAVFRYELPAQGLLYKRPSIVKGDDMDFSRFDSGIMYDLIYASA 266
Query: 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322
VFLHMPDKLVW GLERLASKL+PYDGRIFVSHNIKFCSRLGGEECTKRL SLGLEY+GK
Sbjct: 267 VFLHMPDKLVWTGLERLASKLKPYDGRIFVSHNIKFCSRLGGEECTKRLASLGLEYLGKH 326
Query: 323 THDSLLFNHYEIWFEFRRSGA 343
THDSLLFNHYEIWFEFRRS A
Sbjct: 327 THDSLLFNHYEIWFEFRRSKA 347
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204929|emb|CBI34236.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 213/241 (88%), Positives = 230/241 (95%)
Query: 103 MQDNVLRKGINPRTRAQQLQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEP 162
MQDNVLRKGINPRTR QQLQDLI+FKGISHYE NHTALPCPGELLVEEHHSNYGEP
Sbjct: 1 MQDNVLRKGINPRTRQQQLQDLIEFKGISHYEEPGEGNHTALPCPGELLVEEHHSNYGEP 60
Query: 163 WAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAF 222
WAGGRDVFEF+AE+ H++P+S VLEIGCGTLRVG+HFIRYLNPE++HCLERDELSLMAAF
Sbjct: 61 WAGGRDVFEFIAESVHLSPDSRVLEIGCGTLRVGLHFIRYLNPEHYHCLERDELSLMAAF 120
Query: 223 RYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASK 282
RYELPSQGLL+KRP+IVRGEDMDF++FGSGVVYDLIYASAVFLHMPDKLVWVGLERLA+K
Sbjct: 121 RYELPSQGLLYKRPLIVRGEDMDFSRFGSGVVYDLIYASAVFLHMPDKLVWVGLERLANK 180
Query: 283 LRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRSG 342
L+PY+GRIFVSHNIKFCSRLGGEECTKRLTSLGLEY+ K THDSLLFNHYEIWFEFRRS
Sbjct: 181 LKPYEGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYVAKHTHDSLLFNHYEIWFEFRRSK 240
Query: 343 A 343
A
Sbjct: 241 A 241
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 343 | ||||||
| TAIR|locus:2096274 | 336 | AT3G05100 "AT3G05100" [Arabido | 0.944 | 0.964 | 0.668 | 1.5e-120 | |
| UNIPROTKB|Q47ZZ1 | 224 | CPS_2928 "Putative uncharacter | 0.384 | 0.589 | 0.266 | 8.3e-08 | |
| TIGR_CMR|CPS_2928 | 224 | CPS_2928 "conserved hypothetic | 0.384 | 0.589 | 0.266 | 8.3e-08 |
| TAIR|locus:2096274 AT3G05100 "AT3G05100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 226/338 (66%), Positives = 256/338 (75%)
Query: 5 TSPTQQKGXXXXXXXXXXXXXXAAIXXXXXXXXXXTCNCP--LSSTTTDAANAVRNGAVX 62
+SP QKG A +C+CP LSS+ TDA A G+
Sbjct: 8 SSPAMQKGIFVSMPVLVLTVSFVAAVFFLLSSSFSSCSCPEALSSSPTDAVEASVGGS-- 65
Query: 63 XXXXXXXXXXXXXXXXXXXXXXXKEDIEWVRDQIHKNGLHMQDNVLRKGINPRTRAQQLQ 122
++DIEWVRD I NGLHMQ N LRKGINPRTR QQL
Sbjct: 66 ----------GGDVRFEDRISPTQDDIEWVRDLIRSNGLHMQKNELRKGINPRTRDQQLA 115
Query: 123 DLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPN 182
DLIQ+KGISHYEG EANNHTALPCPGELLVE+HHSNYGEPWAGGRDVFEFLAE+S + PN
Sbjct: 116 DLIQYKGISHYEGDEANNHTALPCPGELLVEQHHSNYGEPWAGGRDVFEFLAESSSLKPN 175
Query: 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242
S VLEIGCGTLRVG+HFIRYL+P++FHCLE+DELSLMAA RYELPSQGLLHKRP+IVRG+
Sbjct: 176 SRVLEIGCGTLRVGLHFIRYLSPQHFHCLEKDELSLMAALRYELPSQGLLHKRPLIVRGD 235
Query: 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302
DM+F+KFGS YDLIYASAVFLHMPDKLVW GLERL +L+PYDGRIFVSHN+KFCSRL
Sbjct: 236 DMEFSKFGSDTAYDLIYASAVFLHMPDKLVWTGLERLVDRLKPYDGRIFVSHNVKFCSRL 295
Query: 303 GGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRR 340
G ++C+++L SLGLEY+GK+THDSLLFNHYEIWF FRR
Sbjct: 296 GQDKCSQKLASLGLEYLGKQTHDSLLFNHYEIWFGFRR 333
|
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| UNIPROTKB|Q47ZZ1 CPS_2928 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 160 GEPWAG-GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218
G W G+ FE+L + + + +L+IGCGTLR G HFI+YLN N++ ++ ++
Sbjct: 38 GGMWEEIGKLQFEYLTKKG-LQCHHELLDIGCGTLRGGRHFIKYLNSSNYYGVDISFKAI 96
Query: 219 MAAFRYELPSQGLLHKRP--IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGL 276
+A + + + L K+P ++ + + ++F + G +D I+A +VF H+ + +
Sbjct: 97 ESA-KELVVEEKLSDKKPQLLLDKNKSLNFNCY-LGKTFDFIFAQSVFTHLKPEHISECF 154
Query: 277 ERLASKLRPYDGRIFVSHN 295
E + + D + ++N
Sbjct: 155 ENIGQIMNE-DSAFYFTYN 172
|
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| TIGR_CMR|CPS_2928 CPS_2928 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 160 GEPWAG-GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218
G W G+ FE+L + + + +L+IGCGTLR G HFI+YLN N++ ++ ++
Sbjct: 38 GGMWEEIGKLQFEYLTKKG-LQCHHELLDIGCGTLRGGRHFIKYLNSSNYYGVDISFKAI 96
Query: 219 MAAFRYELPSQGLLHKRP--IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGL 276
+A + + + L K+P ++ + + ++F + G +D I+A +VF H+ + +
Sbjct: 97 ESA-KELVVEEKLSDKKPQLLLDKNKSLNFNCY-LGKTFDFIFAQSVFTHLKPEHISECF 154
Query: 277 ERLASKLRPYDGRIFVSHN 295
E + + D + ++N
Sbjct: 155 ENIGQIMNE-DSAFYFTYN 172
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 343 295 0.00092 115 3 11 22 0.36 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 615 (65 KB)
Total size of DFA: 232 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.91u 0.11s 21.02t Elapsed: 00:00:01
Total cpu time: 20.91u 0.11s 21.02t Elapsed: 00:00:01
Start: Sat May 11 07:24:10 2013 End: Sat May 11 07:24:11 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00700134 | hypothetical protein (332 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 343 | |||
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-09 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-06 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.003 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-09
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 186 LEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245
L+IGCGT + + L + ++ +L AA L + GLL + + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAA-AERLAALGLLDAVRVRLDVLDAI 59
Query: 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290
GS +D++ AS V H+ D L L L+P G +
Sbjct: 60 DLDPGS---FDVVVASNVLHHLADPRAV--LRNLRRLLKP-GGVL 98
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Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL-MAAFRYELPSQGLLHKRPIIVRGE 242
VL+ G G+ + R +E D + +A R L L R +V G+
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAG---LAPRVRVVVGD 59
Query: 243 DMDFTKFGSGVVYDLIYASAVFLHMP------DKLVWVGLERLASKLRPYDGRIFV 292
+ + G +DL+ + + L L L+P G + V
Sbjct: 60 ARELLELPDG-SFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKP-GGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG--E 242
VL++GCGT + + ++ ++L A + LL +++G E
Sbjct: 2 VLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAA---ALLADNVEVLKGDAE 57
Query: 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293
++ S +D+I + H+ + + LE L+P G + ++
Sbjct: 58 ELPPEADES---FDVIISDPPLHHLVE-DLARFLEEARRLLKP-GGVLVLT 103
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There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244
+L++GCGT RV R P + ++ + +L A + L + VR
Sbjct: 1 ILDLGCGTGRVLRALARA-GPSSVTGVDISKEALELA-------KERLRDKGPKVRFVVA 52
Query: 245 DFTKF-GSGVVYDLIYASAVFLHMPDKLVWV-GLERLASKLRP 285
D +DL+ + + L L A LRP
Sbjct: 53 DARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRP 95
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This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL-MAAFRYELPSQGLLHKRPIIV 239
P + VL+IGCGT + + R ++ L +A +L + V
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRIT----FV 56
Query: 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295
+G+ D G +D ++ + + L+ LAS L+P GR+ ++
Sbjct: 57 QGDAPDALDLLEG--FDAVFIGGGGGDLLEL-----LDALASLLKP-GGRLVLNAV 104
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.003
Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 30/143 (20%)
Query: 167 RDVFEFLAEASHITPNSH-VLEIGCGTLRVGVHFIRYLNPENFHC--LERDELSLMAAFR 223
R + LA VL+IGCGT G +R L F ++ +++
Sbjct: 7 RFLARLLARLLPRLKPGGRVLDIGCGT---G-ILLRLLRERGFDVTGVDPSPAAVLIFSL 62
Query: 224 YELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKL 283
++ P +L + YDLI A V H+PD L++L L
Sbjct: 63 FDAPDPAVLAGK-------------------YDLITAFEVLEHLPDPPAL--LQQLRELL 101
Query: 284 RPYDGRIFVS-HNIKFCSRLGGE 305
+P G + +S +RL
Sbjct: 102 KP-GGVLLISTPLADDDARLFAN 123
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This family appears to be a methyltransferase domain. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.82 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.8 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.71 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.71 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.67 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.63 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.63 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.6 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.59 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.59 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.59 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.58 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.57 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.56 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.54 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.54 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.54 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.53 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.53 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.51 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.5 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.49 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.48 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.46 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.44 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.44 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.43 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.38 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.38 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.37 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.37 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.36 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.35 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.35 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.33 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.33 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.32 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.32 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.32 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.32 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.3 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.3 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.3 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.28 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.27 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.26 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.26 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.25 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.24 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.23 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.22 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.22 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.21 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.21 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.21 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.21 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.2 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.2 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.2 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.19 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.19 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.19 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.19 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.17 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.16 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.15 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.14 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.14 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.13 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.13 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.1 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.1 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.09 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.09 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.08 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.06 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.03 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.03 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.03 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.03 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.02 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.98 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.98 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.98 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.97 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.95 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.91 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.88 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.87 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.87 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.87 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.87 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.86 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.86 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.86 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.84 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.84 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.82 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.82 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.81 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.8 | |
| PLN02366 | 308 | spermidine synthase | 98.8 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.78 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.77 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.76 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.76 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.76 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.73 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.71 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.7 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.67 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.67 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.66 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.65 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.64 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.64 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.64 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.63 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.63 | |
| PLN02476 | 278 | O-methyltransferase | 98.61 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.61 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.59 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.59 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.57 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.57 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.55 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.53 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.49 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.49 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.46 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.43 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.42 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.35 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.35 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.32 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.32 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.32 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.29 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.28 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.26 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.25 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.23 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.23 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.23 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.21 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.21 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.17 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.12 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.12 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.11 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.11 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.11 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.1 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.09 | |
| PLN02823 | 336 | spermine synthase | 98.07 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.06 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.04 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.01 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.0 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.97 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.94 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.91 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.86 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.84 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.83 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.82 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.82 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.81 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.8 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.79 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.78 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.76 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.74 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.72 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.72 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.7 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.69 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.67 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.65 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.6 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.59 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.59 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.56 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.5 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.4 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.39 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.35 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.34 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.28 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.27 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.27 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.27 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.24 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.23 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.18 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.17 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.12 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.05 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.04 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.91 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.88 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.87 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.86 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.82 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.8 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.77 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.74 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.62 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.42 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.41 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.37 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.29 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.27 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.24 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.17 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.11 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.03 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.87 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.86 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.74 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.44 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.32 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.27 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.68 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.6 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.59 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.47 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.24 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.2 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.18 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 94.12 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.96 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 93.92 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 93.9 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.88 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.71 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.62 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.19 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 93.08 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.01 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.86 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.57 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.15 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 92.11 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 91.77 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.54 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.53 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 91.4 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.21 | |
| PRK13699 | 227 | putative methylase; Provisional | 90.03 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 89.79 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.75 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.2 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 88.98 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 88.33 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 86.77 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 86.13 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 85.89 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 85.62 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 85.62 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 85.52 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 84.2 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.13 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 83.84 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 83.77 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 82.81 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 82.71 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 82.47 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 81.38 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 81.01 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.96 |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=170.55 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=107.4
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
.+.++++.+++++++++|.+|||||||+|.++..+++.+ ++++++++.|..+.+++++... .|+. +++.+...
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~---g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~-- 119 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY---GCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQ-- 119 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES--
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc---CcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEe--
Confidence 477899999999999999999999999999999999975 4568888888888888766544 4543 35555543
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe--------------ccccccCC-------
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH--------------NIKFCSRL------- 302 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~--------------~~~~~~~~------- 302 (343)
|+.+++ .+||.|+++.+++|++......+|+++.++||| ||++++.. ..+++..+
T Consensus 120 -D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp-gG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~l 195 (273)
T PF02353_consen 120 -DYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP-GGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYL 195 (273)
T ss_dssp --GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET-TEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS--
T ss_pred -eccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC-CcEEEEEecccccccchhhcCCCceEEEEeeCCCCCC
Confidence 555443 499999999999999988888899999999999 99998751 01222222
Q ss_pred -CHHHHHHHHHhcCCcEEEeeec
Q 019282 303 -GGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 303 -~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
..+++...+++.||++......
T Consensus 196 ps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 196 PSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp -BHHHHHHHHHHTT-EEEEEEE-
T ss_pred CCHHHHHHHHhcCCEEEEEEEEc
Confidence 1677888889999998876654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=164.80 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=123.6
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~~~~~~~~~~~ 243 (343)
.+..+++.+++.++++||++|||||||||.+++++++.+ +++|+|++.|..+.+.+++.. +.|+.. ++.+..
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y---~v~V~GvTlS~~Q~~~~~~r~~~~gl~~-~v~v~l--- 128 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY---GVTVVGVTLSEEQLAYAEKRIAARGLED-NVEVRL--- 128 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc---CCEEEEeeCCHHHHHHHHHHHHHcCCCc-ccEEEe---
Confidence 367889999999999999999999999999999999975 456777777778877776643 355542 444433
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe---c-------cccccCC--------CHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH---N-------IKFCSRL--------GGE 305 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~---~-------~~~~~~~--------~~~ 305 (343)
.|..++ .++||.|+++.+|+|++....+.+|++++++|+| ||++++.. . .+|+..| +..
T Consensus 129 ~d~rd~--~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~-~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~ 205 (283)
T COG2230 129 QDYRDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP-GGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSIS 205 (283)
T ss_pred cccccc--ccccceeeehhhHHHhCcccHHHHHHHHHhhcCC-CceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHH
Confidence 355544 3569999999999999998889999999999999 99998752 1 1122222 157
Q ss_pred HHHHHHHhcCCcEEEeeecc---ccccchhHHhhhhhcc
Q 019282 306 ECTKRLTSLGLEYIGKKTHD---SLLFNHYEIWFEFRRS 341 (343)
Q Consensus 306 ~l~~~L~~aGf~~v~~~~~~---~l~~~~~e~w~~~~~~ 341 (343)
++.+..+++||.+...+... .....+|-.+|+..+.
T Consensus 206 ~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283)
T COG2230 206 EILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283)
T ss_pred HHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH
Confidence 88888999999988766433 2334555566655443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-17 Score=147.10 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=104.9
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
.+.+.+..++|.+|||||||||.++..+++..+...++++| .+..|.+.++++....... .+.++.+++++++ + +
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D--~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LP-f-~ 116 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLD--ISESMLEVAREKLKKKGVQ-NVEFVVGDAENLP-F-P 116 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEE--CCHHHHHHHHHHhhccCcc-ceEEEEechhhCC-C-C
Confidence 34444566689999999999999999999988755444554 5555555555543322222 2788889888888 6 5
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------c-------------
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------F------------- 298 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~------------- 298 (343)
+++||+|++.+.++++++.+. +|++++|+||| ||++++..... .
T Consensus 117 D~sFD~vt~~fglrnv~d~~~--aL~E~~RVlKp-gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~ 193 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDK--ALKEMYRVLKP-GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYE 193 (238)
T ss_pred CCccCEEEeeehhhcCCCHHH--HHHHHHHhhcC-CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHH
Confidence 889999999999999998877 99999999999 99998762000 0
Q ss_pred -----c-cCCCHHHHHHHHHhcCCcEEE
Q 019282 299 -----C-SRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 299 -----~-~~~~~~~l~~~L~~aGf~~v~ 320 (343)
. .....+++.+.++++||+.+.
T Consensus 194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 194 YLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 0 112288899999999999877
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=152.98 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=110.4
Q ss_pred chHHHHHHHHHhcCC-----CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 165 GGRDVFEFLAEASHI-----TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l-----~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
.+.++++.+.+...+ .++.+|||||||+|.++..+++.+ +..++++|.++.+.+.++++........++.++
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~ 173 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQ 173 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 345566667766666 678899999999999999999865 234566666666666655543322222356677
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------------------- 297 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------------------- 297 (343)
.++..+++ + .+++||+|++..+++|+++... ++++++++||| ||++++.....
T Consensus 174 ~~D~~~~~-~-~~~~FD~V~s~~~~~h~~d~~~--~l~e~~rvLkp-GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~ 248 (340)
T PLN02244 174 VADALNQP-F-EDGQFDLVWSMESGEHMPDKRK--FVQELARVAAP-GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC 248 (340)
T ss_pred EcCcccCC-C-CCCCccEEEECCchhccCCHHH--HHHHHHHHcCC-CcEEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 66544443 3 3679999999999999998765 99999999999 99998863100
Q ss_pred --c-ccC-CCHHHHHHHHHhcCCcEEEeeecccc
Q 019282 298 --F-CSR-LGGEECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 298 --~-~~~-~~~~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
+ ... ...+++.++++++||+++........
T Consensus 249 ~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 249 AAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred hhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence 0 000 13789999999999999987755433
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=145.67 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=109.3
Q ss_pred CCc-cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 161 EPW-AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 161 ~~~-~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
+++ ..+.+-...++..+.++++.+|||||||+|..+..++... +..++++|.++.+.+.++++... ..++.+.
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~ 104 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSD---KNKIEFE 104 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCc---CCceEEE
Confidence 444 3445556667777889999999999999999999888753 23455566666666655543321 2245555
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----cc------------ccCC
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----KF------------CSRL 302 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----~~------------~~~~ 302 (343)
.++..+.+ + ++++||+|++..+++|++......+|++++++||| ||+++++... .. ....
T Consensus 105 ~~D~~~~~-~-~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP-GG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (263)
T PTZ00098 105 ANDILKKD-F-PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP-NGILLITDYCADKIENWDEEFKAYIKKRKYTLI 181 (263)
T ss_pred ECCcccCC-C-CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEEeccccccCcHHHHHHHHHhcCCCCC
Confidence 55333222 2 35789999999999999855566799999999999 9999987421 00 1112
Q ss_pred CHHHHHHHHHhcCCcEEEeeeccc
Q 019282 303 GGEECTKRLTSLGLEYIGKKTHDS 326 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~~~~ 326 (343)
+.+++.++|+++||+++.......
T Consensus 182 ~~~~~~~~l~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 182 PIQEYGDLIKSCNFQNVVAKDISD 205 (263)
T ss_pred CHHHHHHHHHHCCCCeeeEEeCcH
Confidence 378999999999999988765433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=145.64 Aligned_cols=140 Identities=22% Similarity=0.345 Sum_probs=73.3
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
.....++.+|||+|||||.++..+++..++ ...++++|.++.|.+.++++....... ++.++.+++++++ + ++++|
T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~-~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp-~-~d~sf 117 (233)
T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGP-NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP-F-PDNSF 117 (233)
T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S--TT-E
T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCC-ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc-C-CCCce
Confidence 346778899999999999999999886643 224555555556666555443322122 6788888777776 4 46899
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---------------------------------ccc----
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---------------------------------IKF---- 298 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---------------------------------~~~---- 298 (343)
|+|++.+.++++++... .|++++|+||| ||+++|... ..+
T Consensus 118 D~v~~~fglrn~~d~~~--~l~E~~RVLkP-GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S 194 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRER--ALREMYRVLKP-GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPES 194 (233)
T ss_dssp EEEEEES-GGG-SSHHH--HHHHHHHHEEE-EEEEEEEEEEB-SSHHHHHHHHH--------------------------
T ss_pred eEEEHHhhHHhhCCHHH--HHHHHHHHcCC-CeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccc
Confidence 99999999999998766 99999999999 999987610 000
Q ss_pred ccCC-CHHHHHHHHHhcCCcEEEee
Q 019282 299 CSRL-GGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 299 ~~~~-~~~~l~~~L~~aGf~~v~~~ 322 (343)
+..+ ..+++.++|+++||+.++.+
T Consensus 195 i~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 195 IRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 1111 28899999999999977644
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-15 Score=137.76 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=99.1
Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCC
Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
+...++++.+|||||||||.++..+++..+. .. ++++|.++.|.+.++++.. ......++.++.++..+++ + .
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~--V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~-~ 142 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK--VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-F-D 142 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCE--EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-C-C
Confidence 3456778899999999999999988876532 34 4445555555555443221 1111225666766555544 3 3
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----c-----------------------------
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----F----------------------------- 298 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----~----------------------------- 298 (343)
+++||+|++..++||++++.. ++++++|+||| ||++++..... +
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~--~l~ei~rvLkp-GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLK--AMQEMYRVLKP-GSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCEeEEEEecccccCCCHHH--HHHHHHHHcCc-CcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 678999999999999998766 99999999999 99998863110 0
Q ss_pred ----ccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 299 ----CSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 299 ----~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
...+.++++.++|+++||+.+....
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 0123488999999999999886543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=145.48 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+++ .+..++++|.+..+.+.+++.........++.++.++..++. . .+++||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~-~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-D-EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-h-ccCCCCEEE
Confidence 4567999999999999998887 345677777777777777654332222225566665444443 2 357899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHHhc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLTSL 314 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~~a 314 (343)
+..+++|++++.. +++++.++||| ||.++++.... +...++++++.+.|+++
T Consensus 204 ~~~vLeHv~d~~~--~L~~l~r~LkP-GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 204 SLEVIEHVANPAE--FCKSLSALTIP-NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred EhhHHHhcCCHHH--HHHHHHHHcCC-CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 9999999999876 99999999999 99999873110 11234599999999999
Q ss_pred CCcEEEeeec
Q 019282 315 GLEYIGKKTH 324 (343)
Q Consensus 315 Gf~~v~~~~~ 324 (343)
||+++.....
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999877543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=138.92 Aligned_cols=141 Identities=20% Similarity=0.189 Sum_probs=99.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
.+.+.+. .++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ..++.++.++..++...
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~-~~~v~~~~~d~~~l~~~- 108 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGV-SDNMQFIHCAAQDIAQH- 108 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCC-ccceEEEEcCHHHHhhh-
Confidence 3444444 45679999999999999999883 3456666666666666655433 232 23556666644444323
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------c----ccC
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------F----CSR 301 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~----~~~ 301 (343)
.+++||+|++..+++|+.++.. +++++.++||| ||.+++.+... + ...
T Consensus 109 ~~~~fD~V~~~~vl~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255)
T PRK11036 109 LETPVDLILFHAVLEWVADPKS--VLQTLWSVLRP-GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255)
T ss_pred cCCCCCEEEehhHHHhhCCHHH--HHHHHHHHcCC-CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCC
Confidence 3578999999999999988765 99999999999 99998752110 0 011
Q ss_pred CCHHHHHHHHHhcCCcEEEee
Q 019282 302 LGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+.++++.++|+++||+++...
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeee
Confidence 338999999999999988544
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=139.98 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+...+...+...++.+|||||||+|.++..++.... ..++++|++..+...++..........++.+... ++.+
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~---~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~---~ie~ 182 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA---KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL---GIEQ 182 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC---CHHH
Confidence 445566556667788999999999999988876422 2477888877776543221110001123444433 3333
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec----cc---------c------ccCCCHHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN----IK---------F------CSRLGGEECTK 309 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~----~~---------~------~~~~~~~~l~~ 309 (343)
++....||+|++..+++|++++.. +|++++++||| ||.|++... .. + .......++..
T Consensus 183 lp~~~~FD~V~s~gvL~H~~dp~~--~L~el~r~Lkp-GG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~ 259 (314)
T TIGR00452 183 LHELYAFDTVFSMGVLYHRKSPLE--HLKQLKHQLVI-KGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKN 259 (314)
T ss_pred CCCCCCcCEEEEcchhhccCCHHH--HHHHHHHhcCC-CCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHH
Confidence 333458999999999999988866 99999999999 999998621 00 0 01123788999
Q ss_pred HHHhcCCcEEEeeecccc--ccchhHHhhh
Q 019282 310 RLTSLGLEYIGKKTHDSL--LFNHYEIWFE 337 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~~l--~~~~~e~w~~ 337 (343)
+|+++||+.++....... -......|+.
T Consensus 260 ~L~~aGF~~V~i~~~~~tt~~eqr~t~w~~ 289 (314)
T TIGR00452 260 WLEKVGFENFRILDVLKTTPEEQRKTDWIL 289 (314)
T ss_pred HHHHCCCeEEEEEeccCCCHHHhhhhhhhh
Confidence 999999999976543222 2344557765
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=134.94 Aligned_cols=136 Identities=18% Similarity=0.106 Sum_probs=96.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
..+.+.+...++.+|||||||+|.++..+++..+... ++++|.++.+.+.+++. .+.++.++..+ +.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~--v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~---~~ 85 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAV--IEALDSSPEMVAAARER--------GVDARTGDVRD---WK 85 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCE--EEEEECCHHHHHHHHhc--------CCcEEEcChhh---CC
Confidence 4455556777889999999999999999998765444 55555555666655431 23345443333 33
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----------------ccc------------cC
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----------------KFC------------SR 301 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----------------~~~------------~~ 301 (343)
.+++||+|+++.++||+++... ++++++++||| ||.+++.... .+. ..
T Consensus 86 ~~~~fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 162 (255)
T PRK14103 86 PKPDTDVVVSNAALQWVPEHAD--LLVRWVDELAP-GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVV 162 (255)
T ss_pred CCCCceEEEEehhhhhCCCHHH--HHHHHHHhCCC-CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCC
Confidence 4578999999999999988755 99999999999 9999885210 010 01
Q ss_pred CCHHHHHHHHHhcCCcEEEee
Q 019282 302 LGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..++++.++|+++||++....
T Consensus 163 ~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 163 QTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred CCHHHHHHHHHhCCCeEEEEe
Confidence 238999999999999855433
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=128.46 Aligned_cols=131 Identities=23% Similarity=0.300 Sum_probs=91.8
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
.+.+..... .+++.+|||||||+|.++..+++. +..++++|++..+... . ..........+.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~g~D~~~~~~~~--~---------~~~~~~~~~~~~-- 72 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR----GFEVTGVDISPQMIEK--R---------NVVFDNFDAQDP-- 72 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT----TSEEEEEESSHHHHHH--T---------TSEEEEEECHTH--
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHhh--h---------hhhhhhhhhhhh--
Confidence 333433333 678899999999999999999773 3356666666666653 0 111111111111
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTK 309 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~ 309 (343)
...++.||+|+++.+++|++++.. +|++++++||| ||.++++.... +...++.+++.+
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~--~l~~l~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEE--FLKELSRLLKP-GGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQ 149 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHH--HHHHHHHCEEE-EEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHH
T ss_pred hccccchhhHhhHHHHhhcccHHH--HHHHHHHhcCC-CCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHH
Confidence 124679999999999999997655 99999999999 99999884321 111233899999
Q ss_pred HHHhcCCcEEE
Q 019282 310 RLTSLGLEYIG 320 (343)
Q Consensus 310 ~L~~aGf~~v~ 320 (343)
+++++||++++
T Consensus 150 ll~~~G~~iv~ 160 (161)
T PF13489_consen 150 LLEQAGFEIVE 160 (161)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHHCCCEEEE
Confidence 99999999875
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=139.59 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+...+...++.+|||||||+|.++..++...+. .++++|++..+....+..........++.++.++..+++
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~---~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp- 185 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAK---LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP- 185 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCC---EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-
Confidence 3445555555456789999999999999999885322 377777777776543321111001224556655333333
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------cccc-------cCCCHHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------IKFC-------SRLGGEECTK 309 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------~~~~-------~~~~~~~l~~ 309 (343)
..+.||+|+|..+++|..++.. +|++++++|+| ||.+++... .+-+ ...+.+++..
T Consensus 186 --~~~~FD~V~s~~vl~H~~dp~~--~L~~l~~~Lkp-GG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~ 260 (322)
T PRK15068 186 --ALKAFDTVFSMGVLYHRRSPLD--HLKQLKDQLVP-GGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKN 260 (322)
T ss_pred --CcCCcCEEEECChhhccCCHHH--HHHHHHHhcCC-CcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHH
Confidence 3578999999999999988765 99999999999 999987620 0000 0124788999
Q ss_pred HHHhcCCcEEEeeecccc--ccchhHHhhh
Q 019282 310 RLTSLGLEYIGKKTHDSL--LFNHYEIWFE 337 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~~l--~~~~~e~w~~ 337 (343)
+|+++||+.++....... .......|+.
T Consensus 261 ~L~~aGF~~i~~~~~~~t~~~eqr~t~w~~ 290 (322)
T PRK15068 261 WLERAGFKDVRIVDVSVTTTEEQRKTEWMT 290 (322)
T ss_pred HHHHcCCceEEEEeCCCCCccccccccCcc
Confidence 999999999987654332 2233555654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=129.11 Aligned_cols=133 Identities=16% Similarity=0.242 Sum_probs=92.5
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+...++.+|||+|||+|..+..+++ .+..++++|.++.+.+.+++... .+. . ++..... |+.++...++|
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~-~-~v~~~~~---d~~~~~~~~~f 96 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENL-D-NLHTAVV---DLNNLTFDGEY 96 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCC-C-cceEEec---ChhhCCcCCCc
Confidence 4455678999999999999999998 34466666777776666555433 233 1 2444433 44433345689
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c------cccCCCHHHHHHHHHhcCCcEEEe
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K------FCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~------~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
|+|+++.++||+++.....++++++++||| ||.+++.... + +...+.++++.+.++ ||+.+..
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 999999999998877777899999999999 9996543111 1 111233788888886 8988765
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=128.51 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=101.6
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+...+.++++.+|||+|||+|.++..+++..+ ...++++|+ ++.+.+.++++...... .++.++.++..+++ +
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~--s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~-~ 110 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDF--SENMLSVGRQKVKDAGL-HNVELVHGNAMELP-F 110 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHHHHhcCC-CceEEEEechhcCC-C
Confidence 3444556788899999999999999999998754 334455555 44555555443322112 24566666444433 2
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-------------------------------
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------------------- 298 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------------------- 298 (343)
.+++||+|++..+++|+++... +++++.++|+| ||.+++.+....
T Consensus 111 -~~~~fD~V~~~~~l~~~~~~~~--~l~~~~~~Lk~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 111 -DDNSFDYVTIGFGLRNVPDYMQ--VLREMYRVVKP-GGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred -CCCCccEEEEecccccCCCHHH--HHHHHHHHcCc-CeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 3578999999999999988765 99999999999 999987532110
Q ss_pred ------c-cCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 299 ------C-SRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 299 ------~-~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
. .-++.+++.++|+++||++++.....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0 00125788999999999988766543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=142.57 Aligned_cols=158 Identities=16% Similarity=0.267 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+.+.+.+.++.+|||||||+|..+..+++.++ . .++++|+++.+.+.++++.. +. ..++.+..++..+.+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~--~v~gvDiS~~~l~~A~~~~~-~~-~~~v~~~~~d~~~~~- 327 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD-V--HVVGIDLSVNMISFALERAI-GR-KCSVEFEVADCTKKT- 327 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHhh-cC-CCceEEEEcCcccCC-
Confidence 445566667778889999999999999999988652 3 45555555566655544322 22 224566655333322
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------c-----ccCCCHHHHHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------F-----CSRLGGEECTKRLT 312 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~-----~~~~~~~~l~~~L~ 312 (343)
+ ++++||+|++..+++|++++.. ++++++++||| ||.++++.... + ...+..+++.++++
T Consensus 328 ~-~~~~fD~I~s~~~l~h~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 403 (475)
T PLN02336 328 Y-PDNSFDVIYSRDTILHIQDKPA--LFRSFFKWLKP-GGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLK 403 (475)
T ss_pred C-CCCCEEEEEECCcccccCCHHH--HHHHHHHHcCC-CeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 2 3568999999999999998766 99999999999 99999873110 0 11223888999999
Q ss_pred hcCCcEEEeeeccccccchhHHhh
Q 019282 313 SLGLEYIGKKTHDSLLFNHYEIWF 336 (343)
Q Consensus 313 ~aGf~~v~~~~~~~l~~~~~e~w~ 336 (343)
++||+++..+....-....+..|+
T Consensus 404 ~aGF~~i~~~d~~~~~~~~~~~~~ 427 (475)
T PLN02336 404 DAGFDDVIAEDRTDQFLQVLQREL 427 (475)
T ss_pred HCCCeeeeeecchHHHHHHHHHHH
Confidence 999999876654333333343443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-14 Score=138.02 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=103.6
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
.+..+++.+.+.+.++++.+|||||||+|.++..+++.+ +..++++|.++.+.+.++++.. +. .+.+...
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~---g~~V~giDlS~~~l~~A~~~~~-~l---~v~~~~~--- 220 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY---GVSVVGVTISAEQQKLAQERCA-GL---PVEIRLQ--- 220 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhc-cC---eEEEEEC---
Confidence 356778888888899999999999999999999998764 3356667777777776665432 22 2333332
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---------cccccCC--------CHHHH
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---------IKFCSRL--------GGEEC 307 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---------~~~~~~~--------~~~~l 307 (343)
++.+. +++||.|+++.+++|++......++++++++||| ||.+++... ..+...+ ..+++
T Consensus 221 D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp-GG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i 297 (383)
T PRK11705 221 DYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKP-DGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQI 297 (383)
T ss_pred chhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCC-CcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHH
Confidence 44333 4689999999999999887777799999999999 999988621 1122111 25666
Q ss_pred HHHHHhcCCcEEEeee
Q 019282 308 TKRLTSLGLEYIGKKT 323 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~ 323 (343)
...++ .||++...+.
T Consensus 298 ~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 298 AQASE-GLFVMEDWHN 312 (383)
T ss_pred HHHHH-CCcEEEEEec
Confidence 66555 6898776554
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.8e-15 Score=135.05 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
+.++.+|||||||+|..+..+++.+...+..++++|+++.|.+.++++........++.++.++ +.+.+. ..+|+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d---~~~~~~-~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---IRDIAI-ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCC---hhhCCC-CCCCEE
Confidence 5678899999999999999888754333455666666667776666544321122256666653 333322 359999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+++.++||+++.....++++++++||| ||.+++.
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lkp-GG~l~l~ 163 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNP-GGALVLS 163 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 999999999877777799999999999 9999886
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-15 Score=134.05 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
-++.+|||||||-|.++..+|+ .+..|+++|.+...+..++..+...... +.......+++.. ..++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~--~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS--AGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh--cCCCccEEE
Confidence 4688999999999999999999 5566777777777777766554422211 1122222233332 237999999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------------cccCC-CHHHHHHHHHhc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------------FCSRL-GGEECTKRLTSL 314 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------------~~~~~-~~~~l~~~L~~a 314 (343)
|..|++|++++.. ++..+.+++|| ||.++++.-.. ....+ .++++..++..+
T Consensus 130 cmEVlEHv~dp~~--~~~~c~~lvkP-~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 130 CMEVLEHVPDPES--FLRACAKLVKP-GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred EhhHHHccCCHHH--HHHHHHHHcCC-CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 9999999999987 99999999999 99999872110 01111 289999999999
Q ss_pred CCcEEEeeeccccc
Q 019282 315 GLEYIGKKTHDSLL 328 (343)
Q Consensus 315 Gf~~v~~~~~~~l~ 328 (343)
|++..........+
T Consensus 207 ~~~~~~~~g~~y~p 220 (243)
T COG2227 207 NLKIIDRKGLTYNP 220 (243)
T ss_pred CceEEeecceEecc
Confidence 99887766544433
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-15 Score=133.06 Aligned_cols=145 Identities=20% Similarity=0.222 Sum_probs=102.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-CCCcE-EEecccCCcCCCCCCCceeEEE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-HKRPI-IVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~~~~~-~~~~~~~dl~~~~~~~~fDlIv 259 (343)
|.+|||+|||+|.++..|++ .+..|+|||.+..+.+.+++....... +..+. .+...+.+.++. .+.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceee
Confidence 47899999999999999999 567799999999988888776432211 11111 111122233322 46799999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------------------------ccccCCCHHHHHHHHHhc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------------------------KFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------------------------~~~~~~~~~~l~~~L~~a 314 (343)
|..+++|+.++.. +++.+.+.||| ||.++|+.-. .+..-.+++++..+++.+
T Consensus 164 csevleHV~dp~~--~l~~l~~~lkP-~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 164 CSEVLEHVKDPQE--FLNCLSALLKP-NGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred eHHHHHHHhCHHH--HHHHHHHHhCC-CCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 9999999998866 99999999999 9999998200 011112389999999999
Q ss_pred CCcEEEeeeccccccchhHHh
Q 019282 315 GLEYIGKKTHDSLLFNHYEIW 335 (343)
Q Consensus 315 Gf~~v~~~~~~~l~~~~~e~w 335 (343)
++.+......-..++...+.|
T Consensus 241 ~~~v~~v~G~~y~p~s~~w~~ 261 (282)
T KOG1270|consen 241 GAQVNDVVGEVYNPISGQWLW 261 (282)
T ss_pred CcchhhhhccccccccceeEe
Confidence 998776665555555544444
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=129.96 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
++++.+|||||||+|..+..+++.+...+..++++|.++.+.+.++++........++.++.+ ++.+++. ..+|+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~---d~~~~~~-~~~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVEI-KNASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---ChhhCCC-CCCCEE
Confidence 357789999999999999999886543344566666666666665554332111224556655 4443332 358999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------------------cccC
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------------------FCSR 301 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------------------~~~~ 301 (343)
++..++||+++.....++++++++||| ||.+++..... ....
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCC-CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 999999999877677799999999999 99999873110 1113
Q ss_pred CCHHHHHHHHHhcCCcEEE
Q 019282 302 LGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~ 320 (343)
++.+++.++++++||+.+.
T Consensus 206 ~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 206 DSIETHKARLKNVGFSHVE 224 (239)
T ss_pred CCHHHHHHHHHHcCCchHH
Confidence 3488899999999997544
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=125.14 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=89.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+...++.+|||+|||+|..+..+++ .+..++++|.++.+.+.++++.. .+. .+..... ++.....+++|
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~---d~~~~~~~~~f 95 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARENL---PLRTDAY---DINAAALNEDY 95 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHhCC---CceeEec---cchhccccCCC
Confidence 4455567999999999999999997 34456666666666665544332 232 2222222 33322334689
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-c--------ccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-I--------KFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-~--------~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
|+|+++.+++|++......++++++++||| ||++++... . +....+.++++.+.+. +|+++...
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 999999999999877777899999999999 999655421 1 1111234888988885 58877655
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=125.83 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+...+.+.++.+|||||||+|.++..+++..+...++++|+ ++.+...+++.. .++.+..+ |+..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~--s~~~i~~a~~~~------~~~~~~~~---d~~~ 87 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDS--SPAMLAEARSRL------PDCQFVEA---DIAS 87 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHhC------CCCeEEEC---chhc
Confidence 344455566778889999999999999999998776555555554 445555554321 13445554 3333
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------cc-----------c
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------FC-----------S 300 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~~-----------~ 300 (343)
+...++||+|+++.++||+++... ++++++++||| ||.+++..... +. .
T Consensus 88 ~~~~~~fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258)
T PRK01683 88 WQPPQALDLIFANASLQWLPDHLE--LFPRLVSLLAP-GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258)
T ss_pred cCCCCCccEEEEccChhhCCCHHH--HHHHHHHhcCC-CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcC
Confidence 334568999999999999988755 99999999999 99998863110 00 0
Q ss_pred CCCHHHHHHHHHhcCCcEEE
Q 019282 301 RLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 301 ~~~~~~l~~~L~~aGf~~v~ 320 (343)
....+.+.+.+.++|+.+..
T Consensus 165 ~~~~~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 165 LPPPHAYYDALAPAACRVDI 184 (258)
T ss_pred CCCHHHHHHHHHhCCCceee
Confidence 01266788889999987543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=124.36 Aligned_cols=144 Identities=16% Similarity=0.196 Sum_probs=108.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC------CceEEEEcChhHHHHHHHHhcccCCCCCC-CcEEEeccc
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP------ENFHCLERDELSLMAAFRYELPSQGLLHK-RPIIVRGED 243 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~------~~~~vvdid~s~~~~a~a~~~~~~~~~~~-~~~~~~~~~ 243 (343)
+.....++..++.++||++||||..+..+.++... .++++.|+++.++..+..++. +.++... +..++.+++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~-~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK-KRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh-hcCCCcCCceEEEeCCc
Confidence 33455577788899999999999999999998865 667777777766655543332 2344432 367888888
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---------------------------
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--------------------------- 296 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--------------------------- 296 (343)
++++ + ++++||..++.+.+..+++.+. .|++++|+||| ||++.+....
T Consensus 169 E~Lp-F-dd~s~D~yTiafGIRN~th~~k--~l~EAYRVLKp-GGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~ia 243 (296)
T KOG1540|consen 169 EDLP-F-DDDSFDAYTIAFGIRNVTHIQK--ALREAYRVLKP-GGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIA 243 (296)
T ss_pred ccCC-C-CCCcceeEEEecceecCCCHHH--HHHHHHHhcCC-CcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhh
Confidence 8888 6 4789999999999999999877 99999999999 9999875100
Q ss_pred ----------ccccCCC-HHHHHHHHHhcCCcEEE
Q 019282 297 ----------KFCSRLG-GEECTKRLTSLGLEYIG 320 (343)
Q Consensus 297 ----------~~~~~~~-~~~l~~~L~~aGf~~v~ 320 (343)
..+..+. .+++..+++++||..+.
T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 0011222 78899999999998875
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=130.21 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=98.8
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+.+...+ .++.+|||||||+|.++..+++..+...++++|+++ .+.+.+++... ..++.++.++..+++ +
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~----~~~i~~i~gD~e~lp-~ 174 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEP----LKECKIIEGDAEDLP-F 174 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhh----ccCCeEEeccHHhCC-C
Confidence 334443444 467899999999999999998876555555555544 55554444321 123445555443333 2
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--cc----------ccCCCHHHHHHHHHhcCCc
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--KF----------CSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--~~----------~~~~~~~~l~~~L~~aGf~ 317 (343)
.+++||+|++..+++|++++.. .|++++++||| ||++++.... .+ ......+++.++|+++||+
T Consensus 175 -~~~sFDvVIs~~~L~~~~d~~~--~L~e~~rvLkP-GG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~ 250 (340)
T PLN02490 175 -PTDYADRYVSAGSIEYWPDPQR--GIKEAYRVLKI-GGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFK 250 (340)
T ss_pred -CCCceeEEEEcChhhhCCCHHH--HHHHHHHhcCC-CcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCe
Confidence 3568999999999999998766 99999999999 9999775321 10 1122489999999999999
Q ss_pred EEEeeec
Q 019282 318 YIGKKTH 324 (343)
Q Consensus 318 ~v~~~~~ 324 (343)
.++.+..
T Consensus 251 ~V~i~~i 257 (340)
T PLN02490 251 DVKLKRI 257 (340)
T ss_pred EEEEEEc
Confidence 9886653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-14 Score=112.58 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
|+.+|||||||+|.++..+++..+...++++|+++ .+.+.++++........++.++.++. . ......+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-E-FDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-c-cCcccCCCCCEEEE
Confidence 57899999999999999999966666655655555 44544454442222344777777644 1 22334567999999
Q ss_pred cc-ccccCCc-hHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 261 SA-VFLHMPD-KLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 261 ~~-v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.. .++++.. ++...+++++++.|+| ||++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 99 5554433 4566799999999999 99999863
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=124.44 Aligned_cols=133 Identities=21% Similarity=0.205 Sum_probs=92.9
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
.+|||||||+|..+..+++.++...+++ +|.++.+...++++.. .+.. .++.++.. |+...+..++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~g--id~s~~~~~~a~~~~~~~gl~-~~i~~~~~---d~~~~~~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHG--YTISPEQAEVGRERIRALGLQ-GRIRIFYR---DSAKDPFPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHhcCCC-cceEEEec---ccccCCCCCCCCEeehH
Confidence 3799999999999999998775444444 4555555555554332 3332 25555554 33222234689999999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------ccc--CCCHHHHHHHHHhcCCcEEEeeec
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------FCS--RLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------~~~--~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.+++|+++... +|++++++||| ||.+++..... ... ..+.+++.+.++++||+++.....
T Consensus 75 ~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 75 EVIHHIKDKMD--LFSNISRHLKD-GGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HHHHhCCCHHH--HHHHHHHHcCC-CCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 99999988654 99999999999 99999874211 111 123788999999999999876643
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=126.61 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=100.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..++++.+|||||||+|..+..+++..... ..++++|.++.+.+.++++.. .+. .++.+..++..+++ + .++.|
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~-~-~~~~f 147 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALP-V-ADNSV 147 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCC-C-CCCce
Confidence 467889999999999999888777755432 245555655566666555433 222 24556555433333 2 35689
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------cccCCCHHHHHHHHHhcCCc
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------FCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------~~~~~~~~~l~~~L~~aGf~ 317 (343)
|+|+++.+++|.++... ++++++++||| ||++++..... ....+..+++.++|+++||.
T Consensus 148 D~Vi~~~v~~~~~d~~~--~l~~~~r~Lkp-GG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~ 224 (272)
T PRK11873 148 DVIISNCVINLSPDKER--VFKEAFRVLKP-GGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFV 224 (272)
T ss_pred eEEEEcCcccCCCCHHH--HHHHHHHHcCC-CcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCC
Confidence 99999999999887655 99999999999 99999863110 00112377899999999999
Q ss_pred EEEeeeccccccch
Q 019282 318 YIGKKTHDSLLFNH 331 (343)
Q Consensus 318 ~v~~~~~~~l~~~~ 331 (343)
.+..........+.
T Consensus 225 ~v~i~~~~~~~l~~ 238 (272)
T PRK11873 225 DITIQPKREYRIPD 238 (272)
T ss_pred ceEEEeccceeccc
Confidence 98765544443333
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-13 Score=119.91 Aligned_cols=147 Identities=23% Similarity=0.315 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+.+...+.++.+|||+|||+|.++..+++.+ +...++++|+++... ..+++.... ...++.+..++..+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~--~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML--ALAKERAAG--LGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHHhhC--CCCceEEEecccccCC
Confidence 44556666788899999999999999999999876 445556666655444 433432111 1224455544333322
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----cc-------------------ccCCCH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----KF-------------------CSRLGG 304 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----~~-------------------~~~~~~ 304 (343)
+ .++.||+|++..+++|+++... ++++++++||| ||.+++.... .+ ...+..
T Consensus 83 -~-~~~~~D~v~~~~~~~~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (241)
T PRK08317 83 -F-PDGSFDAVRSDRVLQHLEDPAR--ALAEIARVLRP-GGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLG 157 (241)
T ss_pred -C-CCCCceEEEEechhhccCCHHH--HHHHHHHHhcC-CcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHH
Confidence 2 3578999999999999998766 99999999999 9999876310 00 011125
Q ss_pred HHHHHHHHhcCCcEEEeeec
Q 019282 305 EECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~~~~ 324 (343)
..+.+.|+++||+.+.....
T Consensus 158 ~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 158 RRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHHHcCCCceeEEEE
Confidence 67889999999998876554
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=106.30 Aligned_cols=95 Identities=22% Similarity=0.440 Sum_probs=65.8
Q ss_pred EEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc
Q 019282 186 LEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL 265 (343)
Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~ 265 (343)
||+|||+|..+..+++. +...++++|++. .+...+++... .....+..++..+++ + ++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~--~~~~~~~~~~~----~~~~~~~~~d~~~l~-~-~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISE--EMLEQARKRLK----NEGVSFRQGDAEDLP-F-PDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-H--HHHHHHHHHTT----TSTEEEEESBTTSSS-S--TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCH--HHHHHHHhccc----ccCchheeehHHhCc-c-cccccccccccccee
Confidence 89999999999999996 445555555554 55554444322 113335555445553 3 478999999999999
Q ss_pred cCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
|+.+... ++++++|+||| ||++++
T Consensus 72 ~~~~~~~--~l~e~~rvLk~-gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEA--ALREIYRVLKP-GGRLVI 95 (95)
T ss_dssp GSSHHHH--HHHHHHHHEEE-EEEEEE
T ss_pred eccCHHH--HHHHHHHHcCc-CeEEeC
Confidence 9955544 99999999999 999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=124.77 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+.+...+.++.+|||||||+|.++..+++.++...++++|+ +.+.+.++++.. .+. .+++.++.+ |+.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl-~~rv~~~~~---d~~ 209 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGV-ADRMRGIAV---DIY 209 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCc-cceEEEEec---Ccc
Confidence 345566667788889999999999999999999887666666654 234444444333 333 336666665 332
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---cccc--------------------cCCCH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---IKFC--------------------SRLGG 304 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---~~~~--------------------~~~~~ 304 (343)
+.... .+|+|++..++|+.+++....+|+++++.|+| ||++++.+. .+.. .....
T Consensus 210 ~~~~~-~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p-gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 210 KESYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CCCCC-CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCH
Confidence 22122 47999999999988887666799999999999 999988731 0000 00116
Q ss_pred HHHHHHHHhcCCcEEEe
Q 019282 305 EECTKRLTSLGLEYIGK 321 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~ 321 (343)
+++.++|+++||+.++.
T Consensus 288 ~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 288 ARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHHHHcCCCeeEe
Confidence 88999999999987753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=120.05 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
++...+.+.+.+...++.+|||+|||+|.++..+++. +..++++|.++.+.+.+++... ...++.++..+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER----GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc
Confidence 4455666666666556789999999999999888762 3345555555566665544221 12234443333
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------cccCCCHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------FCSRLGGEEC 307 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------~~~~~~~~~l 307 (343)
++ + .+++||+|+++.+++++++... +|.++.++||| ||.++++.... ....+..+++
T Consensus 97 ~~-~-~~~~fD~V~s~~~l~~~~d~~~--~l~~~~~~Lk~-gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l 171 (251)
T PRK10258 97 LP-L-ATATFDLAWSNLAVQWCGNLST--ALRELYRVVRP-GGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAI 171 (251)
T ss_pred Cc-C-CCCcEEEEEECchhhhcCCHHH--HHHHHHHHcCC-CeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHH
Confidence 33 2 3568999999999999988765 99999999999 99998873110 0111248888
Q ss_pred HHHHHhcCCcE
Q 019282 308 TKRLTSLGLEY 318 (343)
Q Consensus 308 ~~~L~~aGf~~ 318 (343)
.+.+...|++.
T Consensus 172 ~~~l~~~~~~~ 182 (251)
T PRK10258 172 EQALNGWRYQH 182 (251)
T ss_pred HHHHHhCCcee
Confidence 88898888764
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=120.10 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=92.3
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..++.+|||||||+|.++..+++. ...++++| .++.+...+++.........++.+..+ ++.... ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD--~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~--~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVD--ISEQMVQMARNRAQGRDVAGNVEFEVN---DLLSLC--GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEC---ChhhCC--CCcCEE
Confidence 567889999999999999999873 23444554 444555544443322222224555554 444332 689999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------c--------ccCCCHHHHHHHHHhcCCcEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------F--------CSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~--------~~~~~~~~l~~~L~~aGf~~v 319 (343)
++..+++|++......++.++.+++++ ++.+.+..... + ...+.++++.+.++++||+++
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKE-RVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 999999999877777799999999998 76665531100 0 112248999999999999999
Q ss_pred Eeeec
Q 019282 320 GKKTH 324 (343)
Q Consensus 320 ~~~~~ 324 (343)
..+.+
T Consensus 203 ~~~~~ 207 (219)
T TIGR02021 203 REGLV 207 (219)
T ss_pred eeecc
Confidence 87654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=125.69 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||||||+|+.+..+++ .+..++++|.+..+.+.++++.. .+. .+..... |+.....+++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~---D~~~~~~~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENL---NIRTGLY---DINSASIQEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEe---chhcccccCCccEEE
Confidence 445999999999999999988 34456666666666665554433 222 2333332 333333367899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEe--c-------cccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH--N-------IKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~--~-------~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+..+++|++......+++++.++|+| ||++++.. . .++...+.++++.+.+. +|+++...
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~Lkp-gG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNP-GGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCC-CcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 99999999877778899999999999 99966531 1 11122345888988885 48877653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-13 Score=116.89 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=90.3
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
.....++.++||+|||.|+.+.+|++ .++.|+.+|.+....+..++.++ .++ .+.... .|+.++..++.
T Consensus 25 a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~---~Dl~~~~~~~~ 94 (192)
T PF03848_consen 25 AVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRV---ADLNDFDFPEE 94 (192)
T ss_dssp HCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE----BGCCBS-TTT
T ss_pred HHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEE---ecchhccccCC
Confidence 34555677999999999999999999 67888888877776665555443 333 233333 46655555678
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---ccc------ccCCCHHHHHHHHHhcCCcEEEe
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---IKF------CSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---~~~------~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
||+|++..+++|++.+..+.+++.+...++| ||++++... .++ .-.+.+.++...+. |++.+..
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p-GG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKP-GGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEE-EEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCC-cEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 9999999999999999889999999999999 999887421 111 11122567766664 6776653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-14 Score=111.78 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=55.7
Q ss_pred EEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc
Q 019282 186 LEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL 265 (343)
Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~ 265 (343)
||||||+|.++..+++.++...++++|++++++..+ +++..... ............+.......++||+|+++.++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERA--RERLAELG-NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTT--CCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHhhhcC-CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 899999999999999988777777777777665222 33222111 112233333333333232336999999999999
Q ss_pred cCCchHHHHHHHHHHhccCCCCcEE
Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRI 290 (343)
Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343)
|+++.. .++++++++||| ||.|
T Consensus 78 ~l~~~~--~~l~~~~~~L~p-gG~l 99 (99)
T PF08242_consen 78 HLEDIE--AVLRNIYRLLKP-GGIL 99 (99)
T ss_dssp --S-HH--HHHHHHTTT-TS-S-EE
T ss_pred hhhhHH--HHHHHHHHHcCC-CCCC
Confidence 996554 499999999999 9986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=113.45 Aligned_cols=108 Identities=22% Similarity=0.390 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHH-cCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~-~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+.+.+|||+|||+|.++..+++. .+...++++|+++ .+...++++.+ .+. . ++.+..++..+++.. ..+.||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~-~-ni~~~~~d~~~l~~~-~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGL-D-NIEFIQGDIEDLPQE-LEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTS-T-TEEEEESBTTCGCGC-SSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccc-c-ccceEEeehhccccc-cCCCeeE
Confidence 45789999999999999999953 3445555555554 55555555433 333 2 677787755553321 2279999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
|++..+++|+.+... +++++.++|+| ||.+++...
T Consensus 77 I~~~~~l~~~~~~~~--~l~~~~~~lk~-~G~~i~~~~ 111 (152)
T PF13847_consen 77 IISNGVLHHFPDPEK--VLKNIIRLLKP-GGILIISDP 111 (152)
T ss_dssp EEEESTGGGTSHHHH--HHHHHHHHEEE-EEEEEEEEE
T ss_pred EEEcCchhhccCHHH--HHHHHHHHcCC-CcEEEEEEC
Confidence 999999999998866 89999999999 999988753
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=121.41 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
+.+.+...+.--.|.+|||||||.|.++..++..-+ -.|+|+|++.......+.... .+. ......+.-..++++
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA---~~ViGiDP~~lf~~QF~~i~~~lg~-~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA---KSVIGIDPSPLFYLQFEAIKHFLGQ-DPPVFELPLGVEDLP 178 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC---CEEEEECCChHHHHHHHHHHHHhCC-CccEEEcCcchhhcc
Confidence 455555555334588999999999999998887432 248899988776554322111 111 112222211223333
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe------------ccccccC-------CCHHHHH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH------------NIKFCSR-------LGGEECT 308 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~------------~~~~~~~-------~~~~~l~ 308 (343)
..+.||.|+|.+++.|..++.. .|.++++.|+| ||.+++.. +.+-+.. .+...+.
T Consensus 179 ---~~~~FDtVF~MGVLYHrr~Pl~--~L~~Lk~~L~~-gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 179 ---NLGAFDTVFSMGVLYHRRSPLD--HLKQLKDSLRP-GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred ---ccCCcCEEEEeeehhccCCHHH--HHHHHHHhhCC-CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 3578999999999999999987 99999999999 99999762 1111111 1288899
Q ss_pred HHHHhcCCcEEEeeeccc--cccchhHHhhhh
Q 019282 309 KRLTSLGLEYIGKKTHDS--LLFNHYEIWFEF 338 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~--l~~~~~e~w~~~ 338 (343)
.+|+++||+.++.-.... .-...-..|+.+
T Consensus 253 ~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~ 284 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDVSPTTIEEQRKTDWMDF 284 (315)
T ss_pred HHHHHcCCceEEEecCccCCHHHhccCCCcCc
Confidence 999999999988654332 223345555543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=112.83 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=96.6
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
+.......++.+|||||||+|.++..++...+ ...++++|+++ .+...+++.........++.+..++..+.. . .
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-~ 118 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALP-F-P 118 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCC-C-C
Confidence 34444566778999999999999999998775 34555555555 444444443322111224555554333332 2 3
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-ccc--------------------------------
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-IKF-------------------------------- 298 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-~~~-------------------------------- 298 (343)
.+.||+|++..+++++.+... +++++.++|+| ||.+++... ...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~--~l~~~~~~L~~-gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDK--ALREMYRVLKP-GGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCCccEEEEecccccCCCHHH--HHHHHHHhccC-CcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 468999999999999988665 89999999999 999876521 000
Q ss_pred -----ccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 299 -----CSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 299 -----~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
...+..+++.+.++++||+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 0112367899999999999887664
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-12 Score=113.57 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=92.2
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCc
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVV 254 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~ 254 (343)
.+.++++.+|||+|||+|.++..+++..+...++++|+++.++... .+.... . .++..+.++..+... ....+.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l--~~~a~~-~--~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMREL--LEVAEE-R--KNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHH--HHHhhh-c--CCcEEEECCCCCcchhhhcccc
Confidence 4788899999999999999999999877533455555555433322 222111 1 245555554332100 112356
Q ss_pred eeEEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEec---cccccCCC--HHHHHHHHHhcCCcEEEeeeccccc
Q 019282 255 YDLIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSHN---IKFCSRLG--GEECTKRLTSLGLEYIGKKTHDSLL 328 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~~---~~~~~~~~--~~~l~~~L~~aGf~~v~~~~~~~l~ 328 (343)
||+|++. +.++. ...++++++++||| ||.++++.. .++..... .++..++++++||+.+....+.++.
T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKp-GG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~ 215 (226)
T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKD-GGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH 215 (226)
T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCC-CcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc
Confidence 9999853 33322 22368999999999 999999521 12211111 2334589999999999888877776
Q ss_pred cchhH
Q 019282 329 FNHYE 333 (343)
Q Consensus 329 ~~~~e 333 (343)
.+||-
T Consensus 216 ~~h~~ 220 (226)
T PRK04266 216 KDHAA 220 (226)
T ss_pred CCeEE
Confidence 67764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=108.78 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=96.3
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
.+.......++.+|||+|||+|..+..+++..+. ..++++|+++ .+...++++.. ...++.+..++..+.+ +
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~- 102 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE---LPLNIEFIQADAEALP-F- 102 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc---cCCCceEEecchhcCC-C-
Confidence 3444445567889999999999999999987754 3555555554 44443333221 1224555555433333 2
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-c-------------------------------
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-F------------------------------- 298 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~------------------------------- 298 (343)
..++||+|++..+++|.++... +++++.+.|+| ||.+++..... .
T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQK--ALREMYRVLKP-GGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYT 179 (223)
T ss_pred CCCcEEEEEEeeeeCCcccHHH--HHHHHHHHcCC-CcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhH
Confidence 2468999999999999988665 99999999999 99998753100 0
Q ss_pred ------ccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 299 ------CSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 299 ------~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
...+..+++.+.|+++||+.+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 180 YLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 0011367899999999999876654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=113.59 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=90.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
...++.+|||||||+|.++..+++..+. .+..++++|.++.+.+.+++.... ....+...+..++. . .+++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~-~-~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELV-A-EGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEeccccc-c-cCCCc
Confidence 3356789999999999999988875432 224677777777777766653221 12222222222333 2 35789
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------------ccc---------ccCCCHHHHH
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------------IKF---------CSRLGGEECT 308 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------------~~~---------~~~~~~~~l~ 308 (343)
|+|+++.++||+++++...+|++++++++ |+.++.... ..+ ...++++++.
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 99999999999998877779999999998 455443210 000 1233488999
Q ss_pred HHHHhcCCcEEEee
Q 019282 309 KRLTSLGLEYIGKK 322 (343)
Q Consensus 309 ~~L~~aGf~~v~~~ 322 (343)
+.+++ ||++....
T Consensus 209 ~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 209 ALAPQ-GWRVERQW 221 (232)
T ss_pred HHhhC-CCeEEecc
Confidence 99998 99876543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=112.96 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
.++++.......++.+|||||||+|.++..+++. +..++++|.+..+.+.++++.. .+. .+.+...+..++.
T Consensus 36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 108 (233)
T PRK05134 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhh
Confidence 4556665566667889999999999999988873 2335555555555554443322 122 2334433222222
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCC
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRL 302 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~ 302 (343)
.. ..+.||+|++..+++|+++... +|+.+.+.|+| ||.+++..... +...+
T Consensus 109 ~~-~~~~fD~Ii~~~~l~~~~~~~~--~l~~~~~~L~~-gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
T PRK05134 109 AE-HPGQFDVVTCMEMLEHVPDPAS--FVRACAKLVKP-GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFI 184 (233)
T ss_pred hh-cCCCccEEEEhhHhhccCCHHH--HHHHHHHHcCC-CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcC
Confidence 11 3478999999999999988765 89999999999 99998873210 01112
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q 019282 303 GGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~ 322 (343)
.++++.++++++||+++...
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CHHHHHHHHHHCCCeEeeee
Confidence 37889999999999988764
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=103.90 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=67.1
Q ss_pred EEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc-
Q 019282 185 VLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS- 261 (343)
Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~- 261 (343)
|||+|||+|+.+..+++.++.. ...++++|.++.+...+++... .+. .+.++.++..+++ . .+++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~-~-~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLP-F-SDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHH-H-HSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCc-c-cCCCeeEEEEcC
Confidence 7999999999999999987211 1344445555555555554433 222 5667776554443 1 36799999995
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCc
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDG 288 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG 288 (343)
.+++|+.+++...+++++.++|+| ||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~p-gG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRP-GG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEE-EE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCC-CC
Confidence 459999999999999999999999 87
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=110.30 Aligned_cols=126 Identities=22% Similarity=0.208 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||||||+|..+..++...+... ++++|.+..+.+.+++..+ .+. . ++.++.++..++ ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~--V~~iD~s~~~~~~a~~~~~~~~~-~-~i~~i~~d~~~~---~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELK--LTLLESNHKKVAFLREVKAELGL-N-NVEIVNGRAEDF---QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCe--EEEEeCcHHHHHHHHHHHHHhCC-C-CeEEEecchhhc---cccCCccEEE
Confidence 378999999999999999887655444 5555555555554444332 233 2 466776644443 2357899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH---HHhcCCcEEEeeecc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR---LTSLGLEYIGKKTHD 325 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~---L~~aGf~~v~~~~~~ 325 (343)
+.. ++++ ..+++.++++|+| ||.+++.++.. ...++... +...||+.+++...+
T Consensus 115 s~~-~~~~-----~~~~~~~~~~Lkp-gG~lvi~~~~~-----~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 115 SRA-LASL-----NVLLELTLNLLKV-GGYFLAYKGKK-----YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ehh-hhCH-----HHHHHHHHHhcCC-CCEEEEEcCCC-----cHHHHHHHHHhhhhcCceEeeccccC
Confidence 976 4332 2378889999999 99999875322 23444444 444899999877643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=107.55 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+++.+.....++++.+|||||||+|..+..++...+.. +++++|.+..+.+.+++..+..... ++.+..++..++.
T Consensus 33 ~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~--~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~- 108 (187)
T PRK00107 33 ILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPEL--KVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFG- 108 (187)
T ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCC--eEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCC-
Confidence 33444433445668899999999999999998866544 4555566666666555544322222 3666666444443
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
..++||+|++... .+ ...+++.++++||| ||++++.... ....++.+..+..|+.+..
T Consensus 109 --~~~~fDlV~~~~~----~~--~~~~l~~~~~~Lkp-GG~lv~~~~~-----~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 109 --QEEKFDVVTSRAV----AS--LSDLVELCLPLLKP-GGRFLALKGR-----DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred --CCCCccEEEEccc----cC--HHHHHHHHHHhcCC-CeEEEEEeCC-----ChHHHHHHHHHhcCceEee
Confidence 3568999999752 22 23489999999999 9999987532 2366777778888987544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=107.72 Aligned_cols=139 Identities=16% Similarity=0.143 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
..+.+.+...+.+.++.+|||||||+|.++..+++..+...++++|+++.....+ +++.. .+. . ++.++.++.
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a--~~n~~~~~~-~-~i~~~~~d~-- 90 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLI--KENRQRFGC-G-NIDIIPGEA-- 90 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHhCC-C-CeEEEecCc--
Confidence 3455555566778888999999999999999999877655666666666544444 33322 222 2 355554422
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
.. ...+.||+|++....+++ ..+++.+++.|+| ||++++... .....+++.+.++++||+.++...
T Consensus 91 -~~-~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~-gG~lv~~~~----~~~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 91 -PI-ELPGKADAIFIGGSGGNL-----TAIIDWSLAHLHP-GGRLVLTFI----LLENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred -hh-hcCcCCCEEEECCCccCH-----HHHHHHHHHhcCC-CeEEEEEEe----cHhhHHHHHHHHHHCCCCcceEEE
Confidence 21 124589999998665433 3478999999999 999988642 111256778899999998766543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=109.75 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..++.+|||||||+|.++..+++.. .. ++++|.+..+...+++.........++.+..+ +++. .+++||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~--v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~--~~~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK--VVASDISPQMVEEARERAPEAGLAGNITFEVG---DLES--LLGRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE--EEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---Cchh--ccCCcCEE
Confidence 4667899999999999999998742 23 44455555555555543322111124555554 3332 24689999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHHHHHhcCCcEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~~L~~aGf~~v 319 (343)
++..+++|++++....+++++.+.+++ ++.+.+..... ....+..+++.+.++++||+++
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRG-SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCC-eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 999999999888877899999998765 44433321000 0111237889999999999988
Q ss_pred Eeeec
Q 019282 320 GKKTH 324 (343)
Q Consensus 320 ~~~~~ 324 (343)
.....
T Consensus 211 ~~~~~ 215 (230)
T PRK07580 211 RTERI 215 (230)
T ss_pred eeeec
Confidence 87653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-11 Score=108.50 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=91.1
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-------------CCCCcEEEecccC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-------------LHKRPIIVRGEDM 244 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-------------~~~~~~~~~~~~~ 244 (343)
.++++.+|||+|||.|+.+..|++ .++.|+++|.++...+.+.+. .+. ....+.+..++..
T Consensus 31 ~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 31 GLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAE--NGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred CCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHH--cCCCcceeccccceeeecCceEEEEccCC
Confidence 345678999999999999999998 677777777777766653221 111 1124555555333
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE-Eecccc----c--cCCCHHHHHHHHHhcCCc
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV-SHNIKF----C--SRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi-~~~~~~----~--~~~~~~~l~~~L~~aGf~ 317 (343)
++.. ...+.||.|+-..+++|++...+..+++.+.++||| ||++++ +...+. . ..++++++.+.+.. +|+
T Consensus 105 ~~~~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp-gG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~-~~~ 181 (213)
T TIGR03840 105 ALTA-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP-GARQLLITLDYDQSEMAGPPFSVSPAEVEALYGG-HYE 181 (213)
T ss_pred CCCc-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcC-Cce
Confidence 3321 123579999999999999998888899999999999 997544 332111 1 12348888887753 455
Q ss_pred EEEee
Q 019282 318 YIGKK 322 (343)
Q Consensus 318 ~v~~~ 322 (343)
+....
T Consensus 182 i~~~~ 186 (213)
T TIGR03840 182 IELLE 186 (213)
T ss_pred EEEEe
Confidence 44433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=109.04 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+++..+...++++|+++ .+...+++... . ++.++.++..+.+ + .+++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~----~-~~~~~~~d~~~~~-~-~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS----E-NVQFICGDAEKLP-L-EDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC----C-CCeEEecchhhCC-C-CCCceeEEE
Confidence 345789999999999999999877655555555554 55444443221 1 3445554333332 2 357899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------c-ccCCCHHHHHHHHHhcCCcEEEee
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------F-CSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------~-~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+..++||+.+... ++.++.++|+| ||.+++..... . ......+++.+++.++ |+.+...
T Consensus 104 ~~~~l~~~~~~~~--~l~~~~~~L~~-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 104 SNLALQWCDDLSQ--ALSELARVLKP-GGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred EhhhhhhccCHHH--HHHHHHHHcCC-CcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 9999999988765 99999999999 99999863111 0 1112377888888887 8765433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=116.14 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC----CCCCCcEEEecccCCcCCCCCCCcee
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG----LLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~----~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
++.+|||||||+|.++..+++. +..++++|.++.|...++++.... .....+.+... |+.+. ++.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l--~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN---DLESL--SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc---chhhc--CCCcC
Confidence 5779999999999999999983 445666666666666655543221 11123344433 44433 47899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------cc------c--CCCHHHHHHHHHhcCC
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------FC------S--RLGGEECTKRLTSLGL 316 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------~~------~--~~~~~~l~~~L~~aGf 316 (343)
+|+|..+++|+++......++.+.+ +.+ ||.++...... +. . .+.++++.++++++||
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf 292 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW 292 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC
Confidence 9999999999988766667777775 456 55544321100 00 0 1248999999999999
Q ss_pred cEEEeee
Q 019282 317 EYIGKKT 323 (343)
Q Consensus 317 ~~v~~~~ 323 (343)
+++..+.
T Consensus 293 ~v~~~~~ 299 (315)
T PLN02585 293 KVARREM 299 (315)
T ss_pred EEEEEEE
Confidence 9876553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=123.85 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=96.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-CC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-KF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-~~ 249 (343)
..+...+...++.+|||||||+|.++..+++.. . .++++|.++.+...+++.. +. ..++.++.++..+.. .+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~--~v~giD~s~~~l~~a~~~~--~~-~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA--G--QVIALDFIESVIKKNESIN--GH-YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC--C--EEEEEeCCHHHHHHHHHHh--cc-CCceEEEEecccccccCC
Confidence 445555555667899999999999999999853 2 3555555556655443321 11 124455554332111 12
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----c-----ccCC-CHHHHHHHHHhcCCcE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----F-----CSRL-GGEECTKRLTSLGLEY 318 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----~-----~~~~-~~~~l~~~L~~aGf~~ 318 (343)
++++||+|++..+++|++++....++++++++||| ||++++.+..- . ..++ ....+.+.+.++||..
T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~-gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 177 (475)
T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV-GGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRD 177 (475)
T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC-CeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheecc
Confidence 35789999999999999987777899999999999 99998863211 0 0111 2778889999999986
Q ss_pred EEee
Q 019282 319 IGKK 322 (343)
Q Consensus 319 v~~~ 322 (343)
....
T Consensus 178 ~~~~ 181 (475)
T PLN02336 178 EDGN 181 (475)
T ss_pred CCCC
Confidence 5433
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=110.16 Aligned_cols=136 Identities=21% Similarity=0.179 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
++.+|||+|||+|.++..+++.. .. ++++|.+..+...+++....... ..+.+..++..++... ..++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~--v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN--VTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-GAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce--EEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-CCCCccEEEe
Confidence 47799999999999999887732 23 44455554554444432221111 1234444322222211 2368999999
Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHHhcC
Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~~aG 315 (343)
..+++|+.+... +++.+.++|+| ||.+++..... +...+.++++.++++++|
T Consensus 119 ~~~l~~~~~~~~--~l~~~~~~L~~-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 119 MEVLEHVPDPQA--FIRACAQLLKP-GGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred hhHHHhCCCHHH--HHHHHHHhcCC-CcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 999999988765 99999999999 99998763110 001123678999999999
Q ss_pred CcEEEeeecc
Q 019282 316 LEYIGKKTHD 325 (343)
Q Consensus 316 f~~v~~~~~~ 325 (343)
|++++.....
T Consensus 196 ~~i~~~~~~~ 205 (224)
T TIGR01983 196 LRVKDVKGLV 205 (224)
T ss_pred CeeeeeeeEE
Confidence 9998876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=110.37 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcE-EEeccc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPI-IVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~-~~~~~~ 243 (343)
-++++.-+...+.......|||||||||..-. +++ .....++.+|+++.|..++.+..+++.+. .+. ++.+..
T Consensus 61 krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfk----fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~g 135 (252)
T KOG4300|consen 61 KRELFSGIYYFLGKSGKGDVLEVGCGTGANFK----FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADG 135 (252)
T ss_pred HHHHHhhhHHHhcccCccceEEecccCCCCcc----cccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeech
Confidence 34455555544444445578999999998844 333 23557888888888888776655444333 333 677767
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-ecccc-----------------ccCCC--
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-HNIKF-----------------CSRLG-- 303 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-~~~~~-----------------~~~~~-- 303 (343)
++++++ .+++||.|++..++..+.++.. .|+++.|+|+| ||++++. |...- ....|
T Consensus 136 e~l~~l-~d~s~DtVV~TlvLCSve~~~k--~L~e~~rlLRp-gG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ 211 (252)
T KOG4300|consen 136 ENLPQL-ADGSYDTVVCTLVLCSVEDPVK--QLNEVRRLLRP-GGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV 211 (252)
T ss_pred hcCccc-ccCCeeeEEEEEEEeccCCHHH--HHHHHHHhcCC-CcEEEEEecccccchHHHHHHHHHhchhhheeccceE
Confidence 777766 5889999999999998888876 99999999999 9998765 21110 11111
Q ss_pred -HHHHHHHHHhcCCcEEEeee
Q 019282 304 -GEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 304 -~~~l~~~L~~aGf~~v~~~~ 323 (343)
..+..+.|+++.|+.+....
T Consensus 212 ltrd~~e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 212 LTRDTGELLEDAEFSIDSCKR 232 (252)
T ss_pred EehhHHHHhhhcccccchhhc
Confidence 45566788899998776544
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=112.04 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=106.0
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCc-EEE-ecccCCcCCCCCCCceeEEEEc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRP-IIV-RGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~-~~~-~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
+|||||||.|.....+++..+..++.+...|-++..+..-++... ....+. .++ +....++......+++|.|+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~--~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG--YDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc--cchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999999999887766777777777766665554332 111121 111 1111122222356899999999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEe-----------------cccccc--------CCCHHHHHHHHHhcCC
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-----------------NIKFCS--------RLGGEECTKRLTSLGL 316 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-----------------~~~~~~--------~~~~~~l~~~L~~aGf 316 (343)
+++..+++...+.++++++++||| ||.+++.+ ...++. .++.+++.+++.++||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKP-GG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKP-GGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCC-CcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 999999999999999999999999 99999872 111111 1238999999999999
Q ss_pred cEEEeeeccccccch------hHHhhhh
Q 019282 317 EYIGKKTHDSLLFNH------YEIWFEF 338 (343)
Q Consensus 317 ~~v~~~~~~~l~~~~------~e~w~~~ 338 (343)
..++......+.-++ |-.|++.
T Consensus 231 ~~~~~~~~~rl~vNr~k~lkm~Rvwvq~ 258 (264)
T KOG2361|consen 231 EEVQLEVDCRLLVNRKKQLKMYRVWVQA 258 (264)
T ss_pred chhcccceeeeeeehhccCccceEEEEE
Confidence 988766544444333 5566654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=108.20 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=85.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
++-..-.++||+|||.|.++..|+... ..+.++|+++..+..+ +++.. +. .++.+... +++++.+++.||
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~A--r~Rl~-~~--~~V~~~~~---dvp~~~P~~~FD 108 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARA--RERLA-GL--PHVEWIQA---DVPEFWPEGRFD 108 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHH--HHHTT-T---SSEEEEES----TTT---SS-EE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHH--HHhcC-CC--CCeEEEEC---cCCCCCCCCCee
Confidence 454555789999999999999999865 4567777777666555 33222 22 25666654 667666789999
Q ss_pred EEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccc-cccCC----CHHHHHHHHHhc
Q 019282 257 LIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIK-FCSRL----GGEECTKRLTSL 314 (343)
Q Consensus 257 lIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~~~~~----~~~~l~~~L~~a 314 (343)
+|+++.+++++.+ ++...++.++.+.|+| ||.+++.+..+ .+..+ +.+.+.++|.+.
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~p-gG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAP-GGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEE-EEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCC-CCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 9999999999976 5677899999999999 99999986433 33333 477777777654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=114.32 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCH----HHHHHHHHcCC---CceEEEEcChhHHHHHHHHhccc-----CCCC-
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLR----VGVHFIRYLNP---ENFHCLERDELSLMAAFRYELPS-----QGLL- 232 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~----~a~~la~~~~~---~~~~vvdid~s~~~~a~a~~~~~-----~~~~- 232 (343)
.+.+...+.+.....++.+|||+|||||. ++..+++..+. .++.++++|.+..+.+.|++..- .+.+
T Consensus 84 ~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~ 163 (264)
T smart00138 84 EEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPK 163 (264)
T ss_pred HHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCH
Confidence 33444444433344556899999999997 45556665432 23445555555555555443210 0110
Q ss_pred --------------------CCCcEEEecccCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE
Q 019282 233 --------------------HKRPIIVRGEDMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343)
Q Consensus 233 --------------------~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343)
..++.+... |+.+.. +.++||+|+|.++++|++++....++++++++|+| ||+++
T Consensus 164 ~~~~~yf~~~~~~~~v~~~ir~~V~F~~~---dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p-GG~L~ 239 (264)
T smart00138 164 ALLARYFSRVEDKYRVKPELKERVRFAKH---NLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP-GGYLF 239 (264)
T ss_pred HHHhhhEEeCCCeEEEChHHhCcCEEeec---cCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC-CeEEE
Confidence 013445544 333332 36789999999999999888777899999999999 99999
Q ss_pred EEec
Q 019282 292 VSHN 295 (343)
Q Consensus 292 i~~~ 295 (343)
+.+.
T Consensus 240 lg~~ 243 (264)
T smart00138 240 LGHS 243 (264)
T ss_pred EECc
Confidence 9864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=98.35 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
.+...+...+.+.++.+|||+|||+|.++..+++..+...++++|+++. +.+.+++..+ .+. .++.++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 81 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERNARRFGV--SNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHHHHHhCC--CceEEEecccccc
Confidence 4455566667777788999999999999999998776555555555554 4444343322 222 2445554433322
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
... ..++||.|++....++ ...+++.+++.||| ||.+++..
T Consensus 82 ~~~-~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~-gG~li~~~ 122 (124)
T TIGR02469 82 LED-SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRP-GGRIVLNA 122 (124)
T ss_pred Chh-hcCCCCEEEECCcchh-----HHHHHHHHHHHcCC-CCEEEEEe
Confidence 211 2358999999765533 23589999999999 99998863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=104.14 Aligned_cols=132 Identities=20% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...++.+|||+|||+|.++..+++..+ +++++|.++.+.+.++++..... ..+.++.+ |..+. ..++||+
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~~~----~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~---d~~~~-~~~~fD~ 85 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGKGK----CILTTDINPFAVKELRENAKLNN--VGLDVVMT---DLFKG-VRGKFDV 85 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhcCC----EEEEEECCHHHHHHHHHHHHHcC--CceEEEEc---ccccc-cCCcccE
Confidence 344567999999999999999988432 45555555555555444332211 13444544 33222 2458999
Q ss_pred EEEccccccCCch-------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE
Q 019282 258 IYASAVFLHMPDK-------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343)
Q Consensus 258 Ivs~~v~~hl~~~-------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343)
|+++..+++.++. ....+++++.++||| ||.+++.... ..+..++.+.|++.||+.
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~----~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQSS----LNGEPDTFDKLDERGFRY 160 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEEec----cCChHHHHHHHHhCCCeE
Confidence 9999888766532 134579999999999 9999887531 123678889999999988
Q ss_pred EEeeec
Q 019282 319 IGKKTH 324 (343)
Q Consensus 319 v~~~~~ 324 (343)
......
T Consensus 161 ~~~~~~ 166 (179)
T TIGR00537 161 EIVAER 166 (179)
T ss_pred EEEEEe
Confidence 765543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=107.25 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=92.0
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-cCCCCCCCceeE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-FTKFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-l~~~~~~~~fDl 257 (343)
++++.+|||||||+|.++..+++.. +..++++|.++.+.+.+++ . .+.++.++..+ +..+ .+++||+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~---~-----~~~~~~~d~~~~l~~~-~~~sfD~ 78 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVA---R-----GVNVIQGDLDEGLEAF-PDKSFDY 78 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHH---c-----CCeEEEEEhhhccccc-CCCCcCE
Confidence 3567899999999999998887643 2234555555555554432 1 12334333222 2222 3578999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-------------e-ccc-------------cccCCCHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-------------H-NIK-------------FCSRLGGEECTKR 310 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-------------~-~~~-------------~~~~~~~~~l~~~ 310 (343)
|+++.+++|+++... +++++.+.+++ + .+.+. . ... ....+..+++.++
T Consensus 79 Vi~~~~l~~~~d~~~--~l~e~~r~~~~-~-ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 79 VILSQTLQATRNPEE--ILDEMLRVGRH-A-IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred EEEhhHhHcCcCHHH--HHHHHHHhCCe-E-EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 999999999988766 88998887776 3 22210 0 000 0112348999999
Q ss_pred HHhcCCcEEEeeeccccccchhH-Hhhh
Q 019282 311 LTSLGLEYIGKKTHDSLLFNHYE-IWFE 337 (343)
Q Consensus 311 L~~aGf~~v~~~~~~~l~~~~~e-~w~~ 337 (343)
++++||+++.....+....+.-| .||-
T Consensus 155 l~~~Gf~v~~~~~~~~~~~~~~~~~~~~ 182 (194)
T TIGR02081 155 CGELNLRILDRAAFDVDGRGGREVRWFP 182 (194)
T ss_pred HHHCCCEEEEEEEeccccccccccccCc
Confidence 99999999988876665555544 4554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=107.26 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=91.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-------------CCCCcEEEeccc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-------------LHKRPIIVRGED 243 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-------------~~~~~~~~~~~~ 243 (343)
+.++++.+|||+|||.|+.+..|++ .++.|+++|.++...+.+.. +.++ ....+.+..++.
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~--~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFA--ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHH--HcCCCccccccccccccccCceEEEECcc
Confidence 3456678999999999999999998 56777777777766654321 1111 122455555544
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE-EEecc--cc--c--cCCCHHHHHHHHHhcCC
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF-VSHNI--KF--C--SRLGGEECTKRLTSLGL 316 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv-i~~~~--~~--~--~~~~~~~l~~~L~~aGf 316 (343)
.++... ..+.||.|+-..+++|++......+++.+.++|+| ||+++ +++.. +. . ..++++++.+.+.. +|
T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p-gG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~ 183 (218)
T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA-GCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CF 183 (218)
T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-Cc
Confidence 433211 23589999999999999999888999999999999 99744 33211 11 1 12348899888853 25
Q ss_pred cEEEee
Q 019282 317 EYIGKK 322 (343)
Q Consensus 317 ~~v~~~ 322 (343)
++....
T Consensus 184 ~i~~~~ 189 (218)
T PRK13255 184 EIELLE 189 (218)
T ss_pred eEEEee
Confidence 555433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=107.63 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
..+.+.+.+.+.+.++.+|||||||+|..+..+++.++..+ +++++|.++.+.+.++++.. .+. .+++.+..++..+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g-~V~~iD~~~~~~~~a~~~l~~~~~-~~~v~~~~~d~~~ 135 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRG-KVYTVEIVKELAIYAAQNIERLGY-WGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEECCccc
Confidence 34566677777888899999999999999999988764222 35555555555555544332 333 2245566553332
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
. +...++||+|++...+++++ +++.+.|+| ||++++..
T Consensus 136 ~--~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~-gG~lvi~~ 173 (205)
T PRK13944 136 G--LEKHAPFDAIIVTAAASTIP--------SALVRQLKD-GGVLVIPV 173 (205)
T ss_pred C--CccCCCccEEEEccCcchhh--------HHHHHhcCc-CcEEEEEE
Confidence 2 22346899999998887765 357899999 99998864
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=108.31 Aligned_cols=130 Identities=21% Similarity=0.109 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc-CCcCCCCCCCceeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED-MDFTKFGSGVVYDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~-~dl~~~~~~~~fDlI 258 (343)
++.+|||||||+|..+..+++..+...++++|+++.....+ ++... .+. .++.++.++. ..+.....++.||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a--~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA--LKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH--HHHHHHcCC--CCEEEEecCHHHHHHHHcCccccceE
Confidence 56799999999999999999877666666666666555444 33222 222 2466666644 333221235689999
Q ss_pred EEccccccCC------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 259 YASAVFLHMP------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 259 vs~~v~~hl~------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
+++....+.. ......++++++++||| ||.+++...... ...++.+.+++.|+.+.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~~~~~~----~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP-GGEIHFATDWEG----YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCC-CCEEEEEcCCHH----HHHHHHHHHHhCccccc
Confidence 9876543221 11124589999999999 999998742111 14567888999998765
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=109.22 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||||.++..+++.. +..++++|.++.|.+.+++.. ..+.++..+++ + .+++||+|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp-~-~d~sfD~v~ 115 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALP-F-RDKSFDVVM 115 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCC-C-CCCCEEEEE
Confidence 346799999999999999998854 245777777777777665321 12334344443 3 468999999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDG 288 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG 288 (343)
+..+++|+++... .+++++|+||| .+
T Consensus 116 ~~~~l~~~~d~~~--~l~e~~RvLkp-~~ 141 (226)
T PRK05785 116 SSFALHASDNIEK--VIAEFTRVSRK-QV 141 (226)
T ss_pred ecChhhccCCHHH--HHHHHHHHhcC-ce
Confidence 9999999988766 99999999999 64
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=110.98 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC---Cc
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG---VV 254 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~---~~ 254 (343)
++++.+|||+|||+|..+..+++.++ ...++++|++..++..+ .+......+...+..+.++..+...+... ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a--~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKES--AAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHH--HHHHHhhCCCceEEEEEEcccchhhhhcccccCC
Confidence 35678999999999999999998775 34455555555444443 33222222222344455533332212111 13
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
..++++...++++++.+...+|++++++|+| ||.+++
T Consensus 139 ~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p-gG~~li 175 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP-GGGLLI 175 (301)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 3455556788899888888899999999999 999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=107.29 Aligned_cols=107 Identities=24% Similarity=0.296 Sum_probs=85.4
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG 252 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 252 (343)
|.....+.+..+|.|+|||+|..+..|++.++.+. ++|+|.|+.|.+.++++ ++ +..+..+ |+..+.+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~--i~GiDsS~~Mla~Aa~r----lp--~~~f~~a---Dl~~w~p~ 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAV--ITGIDSSPAMLAKAAQR----LP--DATFEEA---DLRTWKPE 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCe--EeeccCCHHHHHHHHHh----CC--CCceecc---cHhhcCCC
Confidence 34456777788999999999999999999998775 55666666777766442 22 3445544 67777677
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...|+++++.+|+++++... +|.++...|.| ||+|.+.
T Consensus 91 ~~~dllfaNAvlqWlpdH~~--ll~rL~~~L~P-gg~LAVQ 128 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPE--LLPRLVSQLAP-GGVLAVQ 128 (257)
T ss_pred CccchhhhhhhhhhccccHH--HHHHHHHhhCC-CceEEEE
Confidence 89999999999999999766 99999999999 9999886
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=104.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|..+..+++.++...++++|+++ .+.+.+++.. . .+.+..++..+ ...+++||+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~----~--~~~~~~~d~~~---~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYL----P--NINIIQGSLFD---PFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhC----C--CCcEEEeeccC---CCCCCCEEE
Confidence 35567899999999999999998866555555555555 4555444321 1 23334443233 224679999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+++.+++|+++.....++++++++++ +.++|.
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~ 141 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCSN---RYILIA 141 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhcC---cEEEEE
Confidence 999999999987777789999999975 455554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=120.66 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=79.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
....++.+|||||||+|.++..+++.++...++++|+++.++.. +++..... ..+..++.++..+++....+++||
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~--Ararl~~~--g~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT--LKKKKQNE--GRSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH--HHHHhhhc--CCCeEEEEcchHhCccccCCCCEE
Confidence 34456889999999999999999887766666666665544444 44322211 124455556555554323467899
Q ss_pred EEEEccccccCC-----------chHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 257 LIYASAVFLHMP-----------DKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 257 lIvs~~v~~hl~-----------~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+|+++.++||+. ......+|++++++||| ||.+++.+
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP-GGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP-GGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC-CcEEEEEe
Confidence 999999998762 23456799999999999 99999975
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=109.33 Aligned_cols=146 Identities=19% Similarity=0.276 Sum_probs=90.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCc-EEEecccCCcCCCCC-CCceeEEE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRP-IIVRGEDMDFTKFGS-GVVYDLIY 259 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~-~~~~~~~~dl~~~~~-~~~fDlIv 259 (343)
..+.||.|+|.||.+..++-.. ...+..++. .......+++....+ ...+ .+.. ..++++.+ .+.||+|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp--~~~Fl~~a~~~l~~~--~~~v~~~~~---~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEP--VEKFLEQAKEYLGKD--NPRVGEFYC---VGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES---HHHHHHHHHHTCCG--GCCEEEEEE---S-GGG----TT-EEEEE
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEecc--CHHHHHHHHHHhccc--CCCcceEEe---cCHhhccCCCCcEeEEE
Confidence 4689999999999999875422 133444444 444444444322111 1122 2222 35555554 47999999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------c-----ccCCCHHHHHHHHHhcCCcEEEeeeccccc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------F-----CSRLGGEECTKRLTSLGLEYIGKKTHDSLL 328 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------~-----~~~~~~~~l~~~L~~aGf~~v~~~~~~~l~ 328 (343)
+.+++.|+.+.+...+|++++..|+| +|.+++-.+.. + ....+.+.+++++++||++++..+.-..+|
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 99999999999999999999999999 99999853211 1 111228889999999999999998888888
Q ss_pred cchhHHhh
Q 019282 329 FNHYEIWF 336 (343)
Q Consensus 329 ~~~~e~w~ 336 (343)
...|.+++
T Consensus 207 ~~L~pV~m 214 (218)
T PF05891_consen 207 KELYPVRM 214 (218)
T ss_dssp TTS-EEEE
T ss_pred ccceEEEE
Confidence 77776554
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-09 Score=99.75 Aligned_cols=142 Identities=18% Similarity=0.291 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+.......++.+|||+|||+|..+..++...+...++++|+++.....+ +++.... ...++.++.+ |+.
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a--~~n~~~~-~~~~i~~~~~---d~~ 168 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA--RRNAKHG-LGARVEFLQG---DWF 168 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHhC-CCCcEEEEEc---ccc
Confidence 355555544556677899999999999999999987666667777666555444 4332211 2224556655 322
Q ss_pred CCCCCCceeEEEEcccccc------CCc------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCC
Q 019282 248 KFGSGVVYDLIYASAVFLH------MPD------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~h------l~~------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343)
.....++||+|+++..+.- +.. .....+++++.++|+| ||.+++..+. ..
T Consensus 169 ~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~e~g~-----~~ 242 (275)
T PRK09328 169 EPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLLEIGY-----DQ 242 (275)
T ss_pred CcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEEEECc-----hH
Confidence 2112468999999643311 111 1124578888899999 9999987532 12
Q ss_pred HHHHHHHHHhcCCcEEEe
Q 019282 304 GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~ 321 (343)
.+.+.+.+.+.||..+..
T Consensus 243 ~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 243 GEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHhCCCceeEE
Confidence 567888999999986655
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-11 Score=103.30 Aligned_cols=108 Identities=22% Similarity=0.306 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
++.+|||+|||+|.++..++...+...++++|+++.....+.. ....+.... +.++.. |+.+...++.||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~--n~~~n~~~~-v~~~~~---d~~~~~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR--NAERNGLEN-VEVVQS---DLFEALPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH--HHHHTTCTT-EEEEES---STTTTCCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH--HHHhcCccc-cccccc---cccccccccceeEEEE
Confidence 6789999999999999999998776667778777766665533 333222222 555544 3333334689999999
Q ss_pred ccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 261 SAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 261 ~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+--++.-.+ .....+++...+.||| ||.+++...
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv~~ 141 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKP-GGRLFLVIN 141 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccC-CCEEEEEee
Confidence 987754443 2456689999999999 999987653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=101.39 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=83.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
+.+|||+|||+|.++..++...+...++++|+++.....+ +++.......+++.++.++..+ ....++||+|+++
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a--~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVA--EENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEEC
Confidence 3699999999999999999987766666776666555544 4333221122246666653322 2123489999996
Q ss_pred c-------------ccccCCch----------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH-hcCCc
Q 019282 262 A-------------VFLHMPDK----------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT-SLGLE 317 (343)
Q Consensus 262 ~-------------v~~hl~~~----------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~-~aGf~ 317 (343)
- +..|-|.. ....++..+.+.|+| ||.+++.++.. -.+.+.+++. +.||.
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~e~g~~-----q~~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVCEIGNW-----QQKSLKELLRIKFTWY 263 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEEEECcc-----HHHHHHHHHHhcCCCc
Confidence 2 22232211 234588899999999 99999987422 1456777777 46887
Q ss_pred EEEe
Q 019282 318 YIGK 321 (343)
Q Consensus 318 ~v~~ 321 (343)
.+..
T Consensus 264 ~~~~ 267 (284)
T TIGR00536 264 DVEN 267 (284)
T ss_pred eeEE
Confidence 6554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-10 Score=104.78 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHH--HHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSL--MAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SG 252 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~--~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~ 252 (343)
+.++++.+|||+|||+|.++.++++.... ..++++|+++.+. +...++. . .++..+.++...-..+. ..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r-~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------R-PNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------c-CCCEEEECCccChhhhhccc
Confidence 56789999999999999999999997753 3466666664322 2222211 1 14455554322111111 23
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc-cCCCHHHH----HHHHHhcCCcEEEeeecccc
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC-SRLGGEEC----TKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~-~~~~~~~l----~~~L~~aGf~~v~~~~~~~l 327 (343)
+.+|+|++.... ++ ....++.++.+.||| ||.++|....... ....++++ .++|+++||+.++.....++
T Consensus 201 ~~vDvV~~Dva~---pd-q~~il~~na~r~LKp-GG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 201 PMVDVIFADVAQ---PD-QARIVALNAQYFLKN-GGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred CCCCEEEEeCCC---cc-hHHHHHHHHHHhccC-CCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 579999987642 33 222367789999999 9999996432221 11123433 47899999998887766555
Q ss_pred ccch
Q 019282 328 LFNH 331 (343)
Q Consensus 328 ~~~~ 331 (343)
-..|
T Consensus 276 ~~~h 279 (293)
T PTZ00146 276 ERDH 279 (293)
T ss_pred cCCc
Confidence 5444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=99.97 Aligned_cols=133 Identities=17% Similarity=0.263 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||+|||+|.++..++...+...++++|+++.....+ +++.. .+. ..++.++.++..+ .+ .++.||+|
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A--~~n~~~~~~-~~~i~~~~~D~~~--~~-~~~~fD~I 193 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVA--EINIERHGL-EDRVTLIQSDLFA--AL-PGRKYDLI 193 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCC-CCcEEEEECchhh--cc-CCCCccEE
Confidence 345799999999999999999877666666666666555444 44333 232 2356666653322 12 34579999
Q ss_pred EEcccc-------------ccCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 259 YASAVF-------------LHMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 259 vs~~v~-------------~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
+++--+ +|-+. .....+++.+.++|+| ||++++..+ +..+.+.+.+.++|
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~-gG~l~~e~g------~~~~~v~~~~~~~~ 266 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE-NGVLVVEVG------NSMEALEEAYPDVP 266 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEEC------cCHHHHHHHHHhCC
Confidence 997221 11111 1124578999999999 999998864 12457888899999
Q ss_pred CcEEEeeecc
Q 019282 316 LEYIGKKTHD 325 (343)
Q Consensus 316 f~~v~~~~~~ 325 (343)
|.......+.
T Consensus 267 ~~~~~~~~~~ 276 (284)
T TIGR03533 267 FTWLEFENGG 276 (284)
T ss_pred CceeeecCCC
Confidence 9877655544
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=100.31 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
++.......+.+.++.+|||+|||+|.++..++...+ ...++++|+++ .+.+.++++.. .+.. .++.++.++..+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~~-~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGVL-NNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCCC-CCeEEEEechhh
Confidence 3444445567888999999999999999999887653 23455555555 44544444333 2222 355556554333
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+... ..+.||.|++.... .....+++.+.+.||| ||++++... .....++..+.|++.||....
T Consensus 104 ~l~~-~~~~~D~V~~~~~~-----~~~~~~l~~~~~~Lkp-gG~lv~~~~----~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 104 ILFT-INEKFDRIFIGGGS-----EKLKEIISASWEIIKK-GGRIVIDAI----LLETVNNALSALENIGFNLEI 167 (198)
T ss_pred hHhh-cCCCCCEEEECCCc-----ccHHHHHHHHHHHcCC-CcEEEEEee----cHHHHHHHHHHHHHcCCCeEE
Confidence 2211 23689999985421 2234589999999999 999987431 111256778888999985443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=107.24 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
.+.++..+..++.+... +.++.+|||+|||+|.++..+++ .....++++|+|+.. ...++++...+.....+
T Consensus 100 tg~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~--l~~A~~n~~~~~~~~~~--- 171 (250)
T PRK00517 100 TGTHPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQA--VEAARENAELNGVELNV--- 171 (250)
T ss_pred CCCCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHH--HHHHHHHHHHcCCCceE---
Confidence 34444445555555532 45788999999999999987766 333345566665544 44444433221111111
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
.+.. .+.+||+|+++...+ ....++.++.++||| ||.++++... ....+++.+.+++.||+++
T Consensus 172 -----~~~~--~~~~fD~Vvani~~~-----~~~~l~~~~~~~Lkp-gG~lilsgi~----~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 172 -----YLPQ--GDLKADVIVANILAN-----PLLELAPDLARLLKP-GGRLILSGIL----EEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred -----EEcc--CCCCcCEEEEcCcHH-----HHHHHHHHHHHhcCC-CcEEEEEECc----HhhHHHHHHHHHHCCCEEE
Confidence 1111 122799999975432 234478999999999 9999987421 1236778889999999988
Q ss_pred Eeee
Q 019282 320 GKKT 323 (343)
Q Consensus 320 ~~~~ 323 (343)
....
T Consensus 235 ~~~~ 238 (250)
T PRK00517 235 EVLE 238 (250)
T ss_pred EEEE
Confidence 7554
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-10 Score=100.65 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=88.2
Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCC
Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
....+.++.+|||+|||+|.++..++.. +...++++|+++.. .+.++++.. .+. .+.++.+ |+.+...++
T Consensus 30 ~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~--l~~a~~n~~~~~~---~~~~~~~---d~~~~~~~~ 100 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRA--VRSARLNALLAGV---DVDVRRG---DWARAVEFR 100 (223)
T ss_pred HhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHH--HHHHHHHHHHhCC---eeEEEEC---chhhhccCC
Confidence 3456778899999999999999988874 33355566665544 443343322 222 2344444 333322356
Q ss_pred ceeEEEEccccccCCc-------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 254 VYDLIYASAVFLHMPD-------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~-------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
+||+|+++..+..... .....+++++.++||| ||++++..... ....++.+.+++.
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~~~~----~~~~~~~~~l~~~ 175 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQSEL----SGVERTLTRLSEA 175 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEEecc----cCHHHHHHHHHHC
Confidence 8999999854432211 0134478889999999 99998864322 1345777888999
Q ss_pred CCcEEEeeeccccccch
Q 019282 315 GLEYIGKKTHDSLLFNH 331 (343)
Q Consensus 315 Gf~~v~~~~~~~l~~~~ 331 (343)
||....... ..++|..
T Consensus 176 g~~~~~~~~-~~~~~~~ 191 (223)
T PRK14967 176 GLDAEVVAS-QWIPFGP 191 (223)
T ss_pred CCCeEEEEe-eccCccH
Confidence 997554433 3444544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=108.40 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=80.6
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHH-HHH-HHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEe
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGV-HFI-RYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVR 240 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~-~la-~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~ 240 (343)
.++...+.+..... .++.+|||||||.|.++. .++ ..++...++++|+|+.....+ ++... .++ .+++.+..
T Consensus 108 L~~lE~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A--r~~~~~~~gL-~~rV~F~~ 183 (296)
T PLN03075 108 LSKLEFDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA--RRLVSSDPDL-SKRMFFHT 183 (296)
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HHHhhhccCc-cCCcEEEE
Confidence 34444555543323 367899999999874433 333 345666666666666555544 44442 343 34788887
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++..+... ..+.||+|++. +++++..+....+|+.+++.|+| ||.+++..
T Consensus 184 ~Da~~~~~--~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr~ 233 (296)
T PLN03075 184 ADVMDVTE--SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAP-GALLMLRS 233 (296)
T ss_pred Cchhhccc--ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCC-CcEEEEec
Confidence 76555431 24689999999 88888544455699999999999 99999874
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-10 Score=101.85 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
+++.+..... ..+.+|||+|||+|.++..+++..+...++++|+++.....+ ++... .+. . ++.++.++..+
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a--~~~~~~~~~-~-~~~~~~~d~~~-- 148 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVA--RKNAARLGL-D-NVTFLQSDWFE-- 148 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHcCC-C-eEEEEECchhc--
Confidence 4444444333 345689999999999999999877666666666665554444 43322 222 2 35556553322
Q ss_pred CCCCCCceeEEEEcccccc------CCchH------------------HHHHHHHHHhccCCCCcEEEEEeccccccCCC
Q 019282 248 KFGSGVVYDLIYASAVFLH------MPDKL------------------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~h------l~~~~------------------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343)
....++||+|+++..+.. +.... ...+++++.++|+| ||.+++..+. ..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~~~-----~~ 221 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEIGY-----DQ 221 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEECc-----cH
Confidence 223578999999654432 11111 12578999999999 9999987531 22
Q ss_pred HHHHHHHHHhcCCcEEEee
Q 019282 304 GEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~~ 322 (343)
.+++.+.++++||+.+...
T Consensus 222 ~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 222 GEAVRALFEAAGFADVETR 240 (251)
T ss_pred HHHHHHHHHhCCCCceEEE
Confidence 5778999999999877643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=106.67 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
..+.+.+.+.+.+. .+..+|||||||+|.++..+++.++.. ...++++|.+..+...+.+. . .++.+..++.
T Consensus 70 l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~--~~~~~~~~d~ 142 (272)
T PRK11088 70 LRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----Y--PQVTFCVASS 142 (272)
T ss_pred HHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----C--CCCeEEEeec
Confidence 44455555554332 345789999999999999998876533 23567777777777766542 1 1345555544
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.+++ + .+++||+|++.... . .+++++|+||| ||++++..
T Consensus 143 ~~lp-~-~~~sfD~I~~~~~~----~-----~~~e~~rvLkp-gG~li~~~ 181 (272)
T PRK11088 143 HRLP-F-ADQSLDAIIRIYAP----C-----KAEELARVVKP-GGIVITVT 181 (272)
T ss_pred ccCC-C-cCCceeEEEEecCC----C-----CHHHHHhhccC-CCEEEEEe
Confidence 4443 3 36789999986531 1 46789999999 99998874
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=110.71 Aligned_cols=116 Identities=9% Similarity=0.240 Sum_probs=76.8
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCC--CCcEEEecccCCcCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLH--KRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~--~~~~~~~~~~~dl~~~~ 250 (343)
+.+.++...+.+|||+|||+|.++..+++..+...++++|++. .+.+.++++.+.+... .++.++.++. +...
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~~~~~~v~~~~~D~--l~~~- 294 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPEALDRCEFMINNA--LSGV- 294 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCcccCceEEEEEccc--cccC-
Confidence 4444444445699999999999999999887766666666655 4455445433322211 1344444322 1222
Q ss_pred CCCceeEEEEccccccC---CchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 251 SGVVYDLIYASAVFLHM---PDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl---~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
..++||+|+|+-.||.. .+.....+|+.++++|+| ||.+++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEEE
Confidence 34589999999887643 334456789999999999 99999885
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=98.25 Aligned_cols=159 Identities=14% Similarity=0.284 Sum_probs=104.4
Q ss_pred CCCc---cchHHHHHHHHHhcC---CCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC
Q 019282 160 GEPW---AGGRDVFEFLAEASH---ITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL 232 (343)
Q Consensus 160 ~~~~---~~~~~~~~~l~~~~~---l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~ 232 (343)
|+-| ....++++++.+... +.+.. +|||+|||.|.+...|++.--...++++|.++..... |+.+++....
T Consensus 39 GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L--A~niAe~~~~ 116 (227)
T KOG1271|consen 39 GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL--AQNIAERDGF 116 (227)
T ss_pred cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH--HHHHHHhcCC
Confidence 5556 356677888877654 44554 9999999999999999985433446666666555444 4555443223
Q ss_pred CCCcEEEecccCCcCCCC-CCCceeEEEEccccccC------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHH
Q 019282 233 HKRPIIVRGEDMDFTKFG-SGVVYDLIYASAVFLHM------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGE 305 (343)
Q Consensus 233 ~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~~v~~hl------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~ 305 (343)
.+.+.+.+. |+.+.. ..++||+|.--.++..+ +......++..+.+.|+| ||+++|+. .+++.+
T Consensus 117 ~n~I~f~q~---DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~-~gifvItS-----CN~T~d 187 (227)
T KOG1271|consen 117 SNEIRFQQL---DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP-GGIFVITS-----CNFTKD 187 (227)
T ss_pred CcceeEEEe---eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC-CcEEEEEe-----cCccHH
Confidence 334555544 443211 35678888765555433 112223488999999999 99999974 456799
Q ss_pred HHHHHHHhcCCcEEEeeecccccc
Q 019282 306 ECTKRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 306 ~l~~~L~~aGf~~v~~~~~~~l~~ 329 (343)
++.+.++..||+.........+.|
T Consensus 188 ELv~~f~~~~f~~~~tvp~ptF~F 211 (227)
T KOG1271|consen 188 ELVEEFENFNFEYLSTVPTPTFMF 211 (227)
T ss_pred HHHHHHhcCCeEEEEeeccceEEe
Confidence 999999999998876554434433
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=96.58 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
..++.+|||+|||+|.++..+++. ...++++|+++. +...+++... .+..+..+.++.++ +.+...++.||+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~--~~~~a~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~d~ 93 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPY--AVECAKCNAKLNNIRNNGVEVIRSD---LFEPFRGDKFDV 93 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHH--HHHHHHHHHHHcCCCCcceEEEecc---ccccccccCceE
Confidence 467789999999999999999885 345556555554 4443333222 22222114444442 222223458999
Q ss_pred EEEccccccCC-------------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE
Q 019282 258 IYASAVFLHMP-------------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343)
Q Consensus 258 Ivs~~v~~hl~-------------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343)
|+++..+.+.+ ......+++++.++||| ||.+++.... ....+.+.+++.++||++
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~~----~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP-GGRILLLQSS----LTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC-CeEEEEEEcc----cCCHHHHHHHHHHCCCee
Confidence 99976654321 11234579999999999 9998876531 123678899999999987
Q ss_pred EEee
Q 019282 319 IGKK 322 (343)
Q Consensus 319 v~~~ 322 (343)
+...
T Consensus 169 ~~~~ 172 (188)
T PRK14968 169 EVVA 172 (188)
T ss_pred eeee
Confidence 6543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=99.45 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=86.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc-cCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE-DMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~-~~dl~~~~~~~~fD 256 (343)
-++|+.||||+|||.|.+..+|.+. .....+++++|........+ .|+ . .++++ +.++..+ ++++||
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-----rGv---~--Viq~Dld~gL~~f-~d~sFD 77 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-----RGV---S--VIQGDLDEGLADF-PDQSFD 77 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-----cCC---C--EEECCHHHhHhhC-CCCCcc
Confidence 4678999999999999999999875 22333445555444333322 233 2 33332 2234445 588999
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe------------------------cccc-----ccCCCHHHH
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH------------------------NIKF-----CSRLGGEEC 307 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~------------------------~~~~-----~~~~~~~~l 307 (343)
.|+.+.+++++..+.. +|+++.|+-+. .++++ +..+ +...+..++
T Consensus 78 ~VIlsqtLQ~~~~P~~--vL~EmlRVgr~----~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDE--VLEEMLRVGRR----AIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred EEehHhHHHhHhHHHH--HHHHHHHhcCe----EEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 9999999999998877 88888777554 34441 1111 122238889
Q ss_pred HHHHHhcCCcEEEeeecc
Q 019282 308 TKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~~~ 325 (343)
.++.++.|+++++....+
T Consensus 152 e~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLD 169 (193)
T ss_pred HHHHHHCCCEEEEEEEEc
Confidence 999999999998876543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=104.03 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=100.7
Q ss_pred hhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC
Q 019282 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL 232 (343)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~ 232 (343)
+.-..|-.++++-.+--++.+.+. +.++.+|||+|||+|.+++..++ ++...+.++|+|+-....++.+ .+.+..
T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eN--a~~N~v 210 (300)
T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAAREN--ARLNGV 210 (300)
T ss_pred ccccccCCCCChhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHH--HHHcCC
Confidence 333445566666555556666543 34789999999999999997776 6666788899998777776443 332221
Q ss_pred CCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH
Q 019282 233 HKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343)
Q Consensus 233 ~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343)
...+ .. ...+.......++||+|+++-.. + -...+...+++.+|| ||+++++-- ... -.+.+.+.++
T Consensus 211 ~~~~-~~--~~~~~~~~~~~~~~DvIVANILA----~-vl~~La~~~~~~lkp-gg~lIlSGI---l~~-q~~~V~~a~~ 277 (300)
T COG2264 211 ELLV-QA--KGFLLLEVPENGPFDVIVANILA----E-VLVELAPDIKRLLKP-GGRLILSGI---LED-QAESVAEAYE 277 (300)
T ss_pred chhh-hc--ccccchhhcccCcccEEEehhhH----H-HHHHHHHHHHHHcCC-CceEEEEee---hHh-HHHHHHHHHH
Confidence 1111 11 11233333345699999998533 2 233488999999999 999998841 111 1677888999
Q ss_pred hcCCcEEEeee
Q 019282 313 SLGLEYIGKKT 323 (343)
Q Consensus 313 ~aGf~~v~~~~ 323 (343)
++||+++....
T Consensus 278 ~~gf~v~~~~~ 288 (300)
T COG2264 278 QAGFEVVEVLE 288 (300)
T ss_pred hCCCeEeEEEe
Confidence 99999887553
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-09 Score=107.86 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||+|||+|.++..++..++...++++|+++.....+ +++.. .+. ..++.++.++.. +....++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A--~~N~~~~~l-~~~v~~~~~D~~---~~~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVA--KSNAIKYEV-TDRIQIIHSNWF---ENIEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHH--HHHHHHcCC-ccceeeeecchh---hhCcCCCccEEE
Confidence 34689999999999999999877766677777766555554 43332 232 225556655322 111245899999
Q ss_pred Eccccc--------------cCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 260 ASAVFL--------------HMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 260 s~~v~~--------------hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
++--+. |-|. .....+++.+.++|+| ||.+++..+. ...+.+.+.+.+.|
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~lEig~-----~q~~~v~~~~~~~g 285 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIILEIGF-----KQEEAVTQIFLDHG 285 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEEEECC-----chHHHHHHHHHhcC
Confidence 963221 1110 1123467788899999 9999987531 12678888999999
Q ss_pred CcEEEe
Q 019282 316 LEYIGK 321 (343)
Q Consensus 316 f~~v~~ 321 (343)
|..+..
T Consensus 286 ~~~~~~ 291 (506)
T PRK01544 286 YNIESV 291 (506)
T ss_pred CCceEE
Confidence 986653
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=101.94 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+...+.+.+.+.++.+|||||||+|..+..+++..+. ..+++++|.++.+.+.++++.+ .+. .++.++.++..
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcc
Confidence 4556777777788999999999999999999998886543 2234444545455555554333 232 25666666433
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.. +...++||+|++....++++ +.+.+.||| ||++++..
T Consensus 138 ~~--~~~~~~fD~I~~~~~~~~~~--------~~l~~~Lkp-gG~lvi~~ 176 (212)
T PRK13942 138 LG--YEENAPYDRIYVTAAGPDIP--------KPLIEQLKD-GGIMVIPV 176 (212)
T ss_pred cC--CCcCCCcCEEEECCCcccch--------HHHHHhhCC-CcEEEEEE
Confidence 22 22357899999987775543 346778999 99998865
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=97.70 Aligned_cols=143 Identities=16% Similarity=0.207 Sum_probs=91.7
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
.+|||+|||+|.++..++...+...++++|+++.....+ +++.. .+. ..++.++.++ +.+..+.++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A--~~n~~~~~l-~~~i~~~~~D---~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVA--EINIERHGL-EDRVTLIESD---LFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHH--HHHHHHhCC-CCcEEEEECc---hhhhCCCCCccEEEEC
Confidence 689999999999999999877666666776666555555 43333 232 2356666653 3222134589999997
Q ss_pred ccc-------------ccCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE
Q 019282 262 AVF-------------LHMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343)
Q Consensus 262 ~v~-------------~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343)
--+ +|-|. .....+++.+.+.|+| ||.+++..+. ....+.+.+.+.||..
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~E~g~------~~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVVEVGN------SRVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEEEECc------CHHHHHHHHhhCCCEE
Confidence 311 11111 1224578999999999 9999987642 2345788888889887
Q ss_pred EEeeeccccccch-hHHhhhh
Q 019282 319 IGKKTHDSLLFNH-YEIWFEF 338 (343)
Q Consensus 319 v~~~~~~~l~~~~-~e~w~~~ 338 (343)
.....+....+-. ++..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~ 302 (307)
T PRK11805 282 LEFENGGDGVFLLTREQLLAH 302 (307)
T ss_pred EEecCCCceEEEEEHHHHHHh
Confidence 7666544433322 4444444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=102.74 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=96.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.......+|||+|||+|..++.+++..++..+.++++++.....+ ++..+.+....++.++.++..++.......+||
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A--~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA--QRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHH--HHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 455557899999999999999999987767777777766554444 444443334557788876444444333345799
Q ss_pred EEEEccccccCCch----------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDK----------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~----------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|+|+--+.-.+.. ...++++...++||| ||.+.+.+..+ ...++.+.+.+.+|+..+
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~e-----rl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLAFVHRPE-----RLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEEEEecHH-----HHHHHHHHHHhcCCCceE
Confidence 99998655433222 245789999999999 99999886411 245667888888888776
Q ss_pred eee
Q 019282 321 KKT 323 (343)
Q Consensus 321 ~~~ 323 (343)
...
T Consensus 192 i~~ 194 (248)
T COG4123 192 IQF 194 (248)
T ss_pred EEE
Confidence 554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=97.85 Aligned_cols=147 Identities=21% Similarity=0.244 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH--HHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 169 VFEFLAEASHITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL--MAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~--~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
+.+.|.+. +++.. +|||||||||..+.++++.++...+...|++.... ..+...+....++. .+..++.....
T Consensus 14 Il~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~--~P~~lDv~~~~ 89 (204)
T PF06080_consen 14 ILEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR--PPLALDVSAPP 89 (204)
T ss_pred HHHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC--CCeEeecCCCC
Confidence 45555544 33344 59999999999999999999998899999998773 22222221112222 22333221111
Q ss_pred cCCCC-----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc------------cc-------ccC
Q 019282 246 FTKFG-----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI------------KF-------CSR 301 (343)
Q Consensus 246 l~~~~-----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~------------~~-------~~~ 301 (343)
.+ +. ..+.||+|++.+++|-++......+|+.+.++|+| ||.|++--+. .| ...
T Consensus 90 w~-~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~-gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~ 167 (204)
T PF06080_consen 90 WP-WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP-GGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPE 167 (204)
T ss_pred Cc-cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC-CCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCC
Confidence 11 11 24689999999999988998888999999999999 9999886211 11 112
Q ss_pred CC---HHHHHHHHHhcCCcEEEe
Q 019282 302 LG---GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 302 ~~---~~~l~~~L~~aGf~~v~~ 321 (343)
.| .+++.++.+++|++.++.
T Consensus 168 ~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 168 WGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred cCccCHHHHHHHHHHCCCccCcc
Confidence 22 678888889999986543
|
The function of this family is unknown. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-10 Score=100.89 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
..+.+.+.+.+.+.++.+|||||||+|.++..+++..+. ..+++++|.++.+.+.++++.. .+. .++.++.++..+
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~-~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGR-DGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCccc
Confidence 445667777778899999999999999999999886543 2234444444455555554433 333 246666654333
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.. ....+||+|++.....+++ +.+.+.|+| ||++++..
T Consensus 140 ~~--~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~-gG~lv~~~ 177 (215)
T TIGR00080 140 GW--EPLAPYDRIYVTAAGPKIP--------EALIDQLKE-GGILVMPV 177 (215)
T ss_pred CC--cccCCCCEEEEcCCccccc--------HHHHHhcCc-CcEEEEEE
Confidence 22 2246899999987665543 457889999 99998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=102.28 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
+.|.+.+....+.+|||+|||+|.++..+++..|...++.+|++...+..+ +++...+...+. .+... ..+.+.
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a--r~Nl~~N~~~~~-~v~~s--~~~~~v- 221 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA--RKNLAANGVENT-EVWAS--NLYEPV- 221 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH--HHhHHHcCCCcc-EEEEe--cccccc-
Confidence 445556666666799999999999999999999888899999888666666 443333322222 22222 122322
Q ss_pred CCCceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 251 SGVVYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
.++||+|+|+--||.-.. ...+.+++...+.|++ ||.|.|..+
T Consensus 222 -~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan 267 (300)
T COG2813 222 -EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVAN 267 (300)
T ss_pred -cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEc
Confidence 349999999999963322 2233789999999999 999988764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=98.43 Aligned_cols=132 Identities=19% Similarity=0.157 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~fDlIv 259 (343)
...+|||||||+|.++..+++..+...++++|++......+..+. ...++ . ++.++.++..++.. +..++.+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l-~-ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGL-K-NLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCC-C-CEEEEccCHHHHHHhhCCCCceeEEE
Confidence 456899999999999999999887777677776665554443221 22333 2 56667665544432 22346899999
Q ss_pred EccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEE
Q 019282 260 ASAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIG 320 (343)
Q Consensus 260 s~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~ 320 (343)
++....+.... ....++++++++||| ||.+++......+ .+.+.+.+.+.| |+.+.
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp-gG~l~~~td~~~~----~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKK-GGVIHFKTDNEPL----FEDMLKVLSENDLFENTS 155 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCC-CCEEEEEeCCHHH----HHHHHHHHHhCCCeEecc
Confidence 87644332211 013489999999999 9999887532221 344566676666 87664
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-10 Score=104.42 Aligned_cols=144 Identities=12% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
.+.++..+...+.+.. ...++.+|||+|||+|.++..+++ .+...++++|+++.+...+ +++...+.........
T Consensus 140 tG~h~tt~l~l~~l~~--~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a--~~n~~~n~~~~~~~~~ 214 (288)
T TIGR00406 140 TGTHPTTSLCLEWLED--LDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESA--RKNAELNQVSDRLQVK 214 (288)
T ss_pred CCCCHHHHHHHHHHHh--hcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHH--HHHHHHcCCCcceEEE
Confidence 3444433434444432 234678999999999999988776 3444566666666554444 4433322222233333
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
.. +.... ..++||+|+++.+.++ ...++.++.++||| ||.++++.-. ....+++.+.+++. |+.+
T Consensus 215 ~~---~~~~~-~~~~fDlVvan~~~~~-----l~~ll~~~~~~Lkp-gG~li~sgi~----~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 215 LI---YLEQP-IEGKADVIVANILAEV-----IKELYPQFSRLVKP-GGWLILSGIL----ETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ec---ccccc-cCCCceEEEEecCHHH-----HHHHHHHHHHHcCC-CcEEEEEeCc----HhHHHHHHHHHHcc-Ccee
Confidence 22 22222 3568999999865432 23489999999999 9999987421 11256777888776 9877
Q ss_pred Eeee
Q 019282 320 GKKT 323 (343)
Q Consensus 320 ~~~~ 323 (343)
....
T Consensus 280 ~~~~ 283 (288)
T TIGR00406 280 EIRQ 283 (288)
T ss_pred eEec
Confidence 6543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-10 Score=104.32 Aligned_cols=148 Identities=19% Similarity=0.285 Sum_probs=96.5
Q ss_pred hhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC
Q 019282 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL 231 (343)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~ 231 (343)
+....|-.+.++-.+-.++.|.+. ..++.+|||+|||+|.+++..++ ++...+.++|+|+.....+.. +.. .+.
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~--N~~~N~~ 209 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARE--NAELNGV 209 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH--HHHHTT-
T ss_pred CCCCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH--HHHHcCC
Confidence 444455566666666667777654 55778999999999999997776 566678889999877766643 333 333
Q ss_pred CCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 232 LHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 232 ~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
.. ++... ...+. ..++||+|+++-.. ......+..+.++|+| ||+++++--... ..+++.+.+
T Consensus 210 ~~-~~~v~-----~~~~~-~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~-~G~lIlSGIl~~----~~~~v~~a~ 272 (295)
T PF06325_consen 210 ED-RIEVS-----LSEDL-VEGKFDLVVANILA-----DVLLELAPDIASLLKP-GGYLILSGILEE----QEDEVIEAY 272 (295)
T ss_dssp TT-CEEES-----CTSCT-CCS-EEEEEEES-H-----HHHHHHHHHCHHHEEE-EEEEEEEEEEGG----GHHHHHHHH
T ss_pred Ce-eEEEE-----Eeccc-ccccCCEEEECCCH-----HHHHHHHHHHHHhhCC-CCEEEEccccHH----HHHHHHHHH
Confidence 32 33221 11112 24799999997544 2334578889999999 999999832111 267788888
Q ss_pred HhcCCcEEEeee
Q 019282 312 TSLGLEYIGKKT 323 (343)
Q Consensus 312 ~~aGf~~v~~~~ 323 (343)
++ ||+.+....
T Consensus 273 ~~-g~~~~~~~~ 283 (295)
T PF06325_consen 273 KQ-GFELVEERE 283 (295)
T ss_dssp HT-TEEEEEEEE
T ss_pred HC-CCEEEEEEE
Confidence 76 999877554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=104.55 Aligned_cols=141 Identities=23% Similarity=0.204 Sum_probs=95.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
++.++...+..+-.++||+|||||..+..+..... . .+|+|+|..|.+.+.++ +..+ .+.+++...|...
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~--ltGvDiS~nMl~kA~eK---g~YD---~L~~Aea~~Fl~~ 183 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD--R--LTGVDISENMLAKAHEK---GLYD---TLYVAEAVLFLED 183 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHh--h--ccCCchhHHHHHHHHhc---cchH---HHHHHHHHHHhhh
Confidence 33344445556668999999999999999887442 3 44455555666655432 2322 1223333344433
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec-----cccc----cC--CCHHHHHHHHHhcCCcE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN-----IKFC----SR--LGGEECTKRLTSLGLEY 318 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~-----~~~~----~~--~~~~~l~~~L~~aGf~~ 318 (343)
..+..||+|++..++.+++.-+. ++-.....|+| ||.|.++.. -.|. .+ ++..-+...++..||++
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~--~~~~aa~~L~~-gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEG--LFAGAAGLLAP-GGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhh--HHHHHHHhcCC-CceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 34679999999999999998766 89999999999 999988720 0111 11 23677888999999999
Q ss_pred EEeee
Q 019282 319 IGKKT 323 (343)
Q Consensus 319 v~~~~ 323 (343)
+..+.
T Consensus 261 i~~~~ 265 (287)
T COG4976 261 IAIED 265 (287)
T ss_pred EEeec
Confidence 98664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=103.57 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=78.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.....+..+||||||+|.++..+++..+...+.+++++......+..+. ...++ . ++.++.+++..+.....++++|
T Consensus 118 ~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~gL-~-NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 118 ISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLNL-K-NLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred hcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcCC-C-cEEEEECCHHHhhhhCCCCcee
Confidence 3445567999999999999999999887777777777765555443322 22333 2 4667776554443333578999
Q ss_pred EEEEccccccCCch----HHHHHHHHHHhccCCCCcEEEEEe
Q 019282 257 LIYASAVFLHMPDK----LVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 257 lIvs~~v~~hl~~~----~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.|+++....|...+ ....++++++++|+| ||.+.+..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkp-GG~l~l~T 235 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKP-GGTLELRT 235 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCC-CcEEEEEE
Confidence 99986544332221 114589999999999 99998864
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=105.24 Aligned_cols=142 Identities=15% Similarity=0.063 Sum_probs=90.2
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343)
.+...+...+.....++++.+|||+|||||.++..++.. ... ++++|.+..+...++.+.. .+..+ +.+..++
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~--v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D 238 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAK--VIGCDIDWKMVAGARINLEHYGIED--FFVKRGD 238 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCe--EEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecc
Confidence 344556666666667888999999999999998876552 234 4444554455544444332 33322 4555554
Q ss_pred cCCcCCCCCCCceeEEEEcccccc-------CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH-------MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h-------l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
..+++ . .++.||+|+++..+.. ........++++++++||| ||++++.... ..++.+.++++|
T Consensus 239 ~~~l~-~-~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~~~~-------~~~~~~~~~~~g 308 (329)
T TIGR01177 239 ATKLP-L-SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYAVPT-------RIDLESLAEDAF 308 (329)
T ss_pred hhcCC-c-ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEEEcC-------CCCHHHHHhhcC
Confidence 44433 2 2578999999744321 1112235689999999999 9999876531 124667899999
Q ss_pred CcEEEee
Q 019282 316 LEYIGKK 322 (343)
Q Consensus 316 f~~v~~~ 322 (343)
| ++...
T Consensus 309 ~-i~~~~ 314 (329)
T TIGR01177 309 R-VVKRF 314 (329)
T ss_pred c-chhee
Confidence 9 66543
|
This family is found exclusively in the Archaea. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=93.21 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+++.......+.+.++.+++|||||||..+..++...+...++.++-++ ......+++.+. +.-.++.++.+++.+.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~-fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAAR-FGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHH-hCCCcEEEEeccchHh
Confidence 4455666667899999999999999999999999666666555555554 444433333221 2234677777755554
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCC-cEEEeeecc
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGL-EYIGKKTHD 325 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf-~~v~~~~~~ 325 (343)
..- .. .||.|+.... .. ...+|+.+...||| ||++++..- .--+.....+.+++.|+ ++++.....
T Consensus 97 L~~-~~-~~daiFIGGg-~~-----i~~ile~~~~~l~~-ggrlV~nai----tlE~~~~a~~~~~~~g~~ei~~v~is~ 163 (187)
T COG2242 97 LPD-LP-SPDAIFIGGG-GN-----IEEILEAAWERLKP-GGRLVANAI----TLETLAKALEALEQLGGREIVQVQISR 163 (187)
T ss_pred hcC-CC-CCCEEEECCC-CC-----HHHHHHHHHHHcCc-CCeEEEEee----cHHHHHHHHHHHHHcCCceEEEEEeec
Confidence 321 12 7999999876 33 33489999999999 999998741 11124556778999999 777666544
Q ss_pred ccccchh
Q 019282 326 SLLFNHY 332 (343)
Q Consensus 326 ~l~~~~~ 332 (343)
......+
T Consensus 164 ~~~lg~~ 170 (187)
T COG2242 164 GKPLGGG 170 (187)
T ss_pred ceeccCe
Confidence 4443333
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=97.58 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred chHHHHHHHHHhcCCCC--CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc
Q 019282 165 GGRDVFEFLAEASHITP--NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~--~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343)
++.++.+..++.+.++. ..-|||||||+|..+..+.+ .+...+|+|+|+.|...+.+.. +.. .....+-
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e---~eg-dlil~DM- 102 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERE---LEG-DLILCDM- 102 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhh---hhc-Ceeeeec-
Confidence 45667777777777766 56799999999999887766 4455555555555555544311 111 2222211
Q ss_pred cCCcCCCCCCCceeEEEEcccccc---------CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC--HHHHHHHH
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH---------MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG--GEECTKRL 311 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h---------l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~--~~~l~~~L 311 (343)
...++ + ..++||.++++..+.+ .|.+.+..+|..++.+|++ |++.++.+- .... .+.+.+..
T Consensus 103 G~Glp-f-rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r-g~raV~QfY----pen~~q~d~i~~~a 175 (270)
T KOG1541|consen 103 GEGLP-F-RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR-GARAVLQFY----PENEAQIDMIMQQA 175 (270)
T ss_pred CCCCC-C-CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc-CceeEEEec----ccchHHHHHHHHHH
Confidence 01222 3 3689999999877654 3445566789999999999 999988642 2111 45666667
Q ss_pred HhcCCc
Q 019282 312 TSLGLE 317 (343)
Q Consensus 312 ~~aGf~ 317 (343)
.++||.
T Consensus 176 ~~aGF~ 181 (270)
T KOG1541|consen 176 MKAGFG 181 (270)
T ss_pred HhhccC
Confidence 778875
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=96.85 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-------CCCC
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-------KFGS 251 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-------~~~~ 251 (343)
++++.+|||||||||.++..+++..+.. ..++++|.++ + . .. ..+.++.++..+.. .+ .
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~-~~V~aVDi~~-~----~-----~~--~~v~~i~~D~~~~~~~~~i~~~~-~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDK-GRVIACDILP-M----D-----PI--VGVDFLQGDFRDELVLKALLERV-G 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCC-ceEEEEeccc-c----c-----CC--CCcEEEecCCCChHHHHHHHHHh-C
Confidence 5788899999999999999999876432 2445555443 1 1 11 13556665444321 12 3
Q ss_pred CCceeEEEEccccccCCchH---------HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh--cCCcEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKL---------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS--LGLEYIG 320 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~---------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~--aGf~~v~ 320 (343)
.+.||+|++..+.++.+.+. ...+|+.+.++||| ||.+++... ..+.+.+.+.. ..|..++
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi~~~-------~~~~~~~~l~~l~~~f~~v~ 186 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVVKVF-------QGEGFDEYLREIRSLFTKVK 186 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEEe-------cCcCHHHHHHHHHhCceEEE
Confidence 56899999987776654431 13489999999999 999998642 12233334444 4777766
Q ss_pred eee
Q 019282 321 KKT 323 (343)
Q Consensus 321 ~~~ 323 (343)
...
T Consensus 187 ~~K 189 (209)
T PRK11188 187 VRK 189 (209)
T ss_pred EEC
Confidence 544
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=103.52 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=75.0
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
+.+.+......+|||+|||+|.++..+++..+...++++|++..++..+ ++..+ .++ ...++.. |.... .
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A--~~nl~~n~l---~~~~~~~---D~~~~-~ 258 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESS--RATLAANGL---EGEVFAS---NVFSD-I 258 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHcCC---CCEEEEc---ccccc-c
Confidence 3333343445689999999999999999877666666666665554444 43322 222 1223332 32222 2
Q ss_pred CCceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 252 GVVYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
.+.||+|+++..||+... .....+++++.+.||| ||.+++..+
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEEEEe
Confidence 568999999999976422 3445689999999999 999988753
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=95.13 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+++...+...+.+.++.+|||+|||+|.++..+++..+...++++|++ +.+.+.++++.+ .+. .++.++.++..
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~--~~v~~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGV--KNVEVIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCC--CCeEEEECchH
Confidence 3445555666778888899999999999999999876554444555554 455554444332 232 24555655433
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH---hcCCcEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT---SLGLEYIGK 321 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~---~aGf~~v~~ 321 (343)
+..+. ....+|.|+... . .....+++++.++|+| ||++++.... .. ...++.+.++ ..|++++..
T Consensus 101 ~~~~~-~~~~~d~v~~~~-----~-~~~~~~l~~~~~~Lkp-gG~li~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 101 ECLAQ-LAPAPDRVCIEG-----G-RPIKEILQAVWQYLKP-GGRLVATASS-LE---GLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHhh-CCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCC-CeEEEEEeec-HH---HHHHHHHHHHhcCCCCceEEEE
Confidence 21111 123457665432 1 1234589999999999 9999887531 10 1122333343 457777765
Q ss_pred eec
Q 019282 322 KTH 324 (343)
Q Consensus 322 ~~~ 324 (343)
...
T Consensus 169 ~~~ 171 (196)
T PRK07402 169 AVN 171 (196)
T ss_pred Ehh
Confidence 543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=95.81 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~~~~~~~~~~~~ 244 (343)
+-.+...+.+.+.++++.+|||||||+|+.+..+++... +|+.++......+.++++. ..|+. ++....++
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~----~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gD-- 128 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG----RVVSIERIEELAEQARRNLETLGYE--NVTVRHGD-- 128 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC----eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECC--
Confidence 345677788888999999999999999999999988543 3555554445555555433 34443 36666552
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
-...++...+||.|+.......+|+. +.+.||| ||++++-.+
T Consensus 129 G~~G~~~~aPyD~I~Vtaaa~~vP~~--------Ll~QL~~-gGrlv~PvG 170 (209)
T COG2518 129 GSKGWPEEAPYDRIIVTAAAPEVPEA--------LLDQLKP-GGRLVIPVG 170 (209)
T ss_pred cccCCCCCCCcCEEEEeeccCCCCHH--------HHHhccc-CCEEEEEEc
Confidence 22334456899999999998888765 7789999 999998754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=97.61 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
....+|||+|||+|.++..++...+...++++|+++. +.+.++++ .. ++.++.+ |+.++...+.||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~n----~~--~v~~v~~---D~~e~~~~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKRL----LP--EAEWITS---DVFEFESNEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHh----Cc--CCEEEEC---chhhhcccCCCcEEE
Confidence 3456999999999999998877654455666666654 44444432 11 3445554 444333456899999
Q ss_pred EccccccCCchHH------------------HHHHHHHHhccCCCCcEEEEEecc-c-cccCCCHHHHHHHHHhcCCcEE
Q 019282 260 ASAVFLHMPDKLV------------------WVGLERLASKLRPYDGRIFVSHNI-K-FCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 260 s~~v~~hl~~~~~------------------~~~L~~l~r~LkP~GG~lvi~~~~-~-~~~~~~~~~l~~~L~~aGf~~v 319 (343)
++..++|.+.... ...+.....+|+| +|.+++.... + |...+.+++++++|+++||...
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p-~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP-TGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC-CceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 9999988654321 3466777889999 9988766322 2 3444569999999999999743
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=89.36 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=73.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
|.+|||+|||+|.++..+++.. ...++++|+++.....+ +.... .+. ..++.++.++..++.....+++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELA--RRNLPRNGL-DDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHH--HHHCHHCTT-TTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHH--HHHHHHccC-CceEEEEECchhhchhhccCceeEEEEE
Confidence 4689999999999999999876 56777777777665555 33333 333 3357777775555442224689999999
Q ss_pred ccccccCCc------hHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 261 SAVFLHMPD------KLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 261 ~~v~~hl~~------~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+--+..... .....+++++.++||| ||.+++..
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~-gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKP-GGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 877753211 1234689999999999 99998753
|
... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=101.10 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+... ++++.+|||+|||+|.++..++...+...++++|+++.+...+ +++.... ..++.++.++..+..
T Consensus 240 ~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A--reNa~~~--g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 240 HLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA--RKNAADL--GARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHc--CCcEEEEEcchhccc
Confidence 455555433 3456799999999999999998876666666666665554444 4433221 125666665332211
Q ss_pred CCCCCCceeEEEEccccccCCc-----------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPD-----------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG 304 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~-----------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~ 304 (343)
....++||+|+++--+..-.+ .....+++.+.+.|+| ||.+++..+.+ -.
T Consensus 314 -l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lilEiG~~-----Q~ 386 (423)
T PRK14966 314 -MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLLEHGFD-----QG 386 (423)
T ss_pred -cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEEEECcc-----HH
Confidence 112457999999754311100 0123567777889999 99998876421 26
Q ss_pred HHHHHHHHhcCCcEEEee
Q 019282 305 EECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~~ 322 (343)
+.+.+.+++.||..++..
T Consensus 387 e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 387 AAVRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHHHCCCcEEEEE
Confidence 788999999999876543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=94.61 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+...+...+.+.++.+|||||||+|..+..+++.. ..++++|++ +.+.+.++++.. .+.. ++.+..++..
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~--~~~~~~a~~~~~~~~~~--~v~~~~~d~~ 136 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERI--KTLQWEAKRRLKQLGLH--NVSVRHGDGW 136 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCC--HHHHHHHHHHHHHCCCC--ceEEEECCcc
Confidence 34556667777788899999999999999998877753 244455544 455544444332 2331 3555555322
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+ .+...++||+|++...++++ .+.+.+.|+| ||++++...
T Consensus 137 ~--~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~-gG~lv~~~~ 176 (212)
T PRK00312 137 K--GWPAYAPFDRILVTAAAPEI--------PRALLEQLKE-GGILVAPVG 176 (212)
T ss_pred c--CCCcCCCcCEEEEccCchhh--------hHHHHHhcCC-CcEEEEEEc
Confidence 1 12234689999998877654 3457889999 999988753
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=93.29 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
.+++.+..... ..++.+|||+|||+|.++..++...+...++++|+++.....+ +++.... ...++.++..+.
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A--~~N~~~~----~~~~~~~D~~~~ 145 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCA--RRNLADA----GGTVHEGDLYDA 145 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHc----CCEEEEeechhh
Confidence 34444443322 2234589999999999999999876655666666666555544 4332211 123454433221
Q ss_pred CCCCCCCceeEEEEccccc------cCCch------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCC
Q 019282 247 TKFGSGVVYDLIYASAVFL------HMPDK------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~------hl~~~------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~ 302 (343)
......+.||+|+++--+. .+++. ....+++.+.++||| ||++++.++.+
T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~~~~~----- 219 (251)
T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVETSER----- 219 (251)
T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEECcc-----
Confidence 1101135799999985432 11111 123578888899999 99999886422
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q 019282 303 GGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+++...+++.||+..-..
T Consensus 220 ~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred hHHHHHHHHHHCCCCceeeE
Confidence 25678889999999765444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.7e-09 Score=94.02 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-hc-ccCCC---------CCCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-EL-PSQGL---------LHKR 235 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-~~-~~~~~---------~~~~ 235 (343)
..+.+.+.. +..+++.+||..|||.|..+..|++ .++.|+++|.++..++.+. +. ..... ...+
T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 344454444 5677888999999999999999998 6778888888877776542 11 11110 1123
Q ss_pred cEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEE-EEEecccc----ccCC--CHHHHH
Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI-FVSHNIKF----CSRL--GGEECT 308 (343)
Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l-vi~~~~~~----~~~~--~~~~l~ 308 (343)
+.+.+++-.++..- ..++||+|+=...|+.+++..+..+.+.+.++|+| ||.+ +++...+. ...+ +.+++.
T Consensus 99 i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p-~g~~lLi~l~~~~~~~~GPPf~v~~~ev~ 176 (218)
T PF05724_consen 99 ITIYCGDFFELPPE-DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP-GGRGLLITLEYPQGEMEGPPFSVTEEEVR 176 (218)
T ss_dssp EEEEES-TTTGGGS-CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE-EEEEEEEEEES-CSCSSSSS----HHHHH
T ss_pred eEEEEcccccCChh-hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC-CCcEEEEEEEcCCcCCCCcCCCCCHHHHH
Confidence 45566533333311 23579999999999999999999999999999999 9994 44421111 1122 278888
Q ss_pred HHHHhcCCcEEEeeecccc
Q 019282 309 KRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l 327 (343)
+.+. .+|++...+..+..
T Consensus 177 ~l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 177 ELFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp HHHT-TTEEEEEEEEEE-T
T ss_pred HHhc-CCcEEEEEeccccc
Confidence 8887 89998877664443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-08 Score=91.63 Aligned_cols=123 Identities=17% Similarity=0.298 Sum_probs=84.7
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
+|||||||+|..++.++...+...++++|+++..+..+..+ .. .++ .+..++.+ .-|... .++||+|+++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N--a~~~~l--~~~~~~~~--dlf~~~--~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN--AERNGL--VRVLVVQS--DLFEPL--RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH--HHHcCC--ccEEEEee--eccccc--CCceeEEEeCC
Confidence 79999999999999999988877888888888777766443 33 333 24444433 113322 35999999973
Q ss_pred ccc-----cCCc------------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcE
Q 019282 263 VFL-----HMPD------------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEY 318 (343)
Q Consensus 263 v~~-----hl~~------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~ 318 (343)
-+- +..+ .....++..+.+.|+| ||.+++..+.. ..+.+.+.+.+.| |..
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~-~g~l~le~g~~-----q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP-GGVLILEIGLT-----QGEAVKALFEDTGFFEI 258 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC-CcEEEEEECCC-----cHHHHHHHHHhcCCceE
Confidence 221 1110 1234678889999999 99999986422 2678999999999 554
Q ss_pred EE
Q 019282 319 IG 320 (343)
Q Consensus 319 v~ 320 (343)
+.
T Consensus 259 v~ 260 (280)
T COG2890 259 VE 260 (280)
T ss_pred EE
Confidence 44
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=97.36 Aligned_cols=115 Identities=23% Similarity=0.362 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
+..+...+.+.+.++++.+|||||||+|+.+..++....+.+ ++.+++++ ...+.++++.. .+. .++.++.++.
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~--~nv~~~~gdg 132 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGI--DNVEVVVGDG 132 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTT--HSEEEEES-G
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhcc--CceeEEEcch
Confidence 456778888889999999999999999999999998765443 44455555 44444444333 333 2566666633
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
. ..+....+||.|++......+|. .+.+.|++ ||++++-..
T Consensus 133 ~--~g~~~~apfD~I~v~~a~~~ip~--------~l~~qL~~-gGrLV~pi~ 173 (209)
T PF01135_consen 133 S--EGWPEEAPFDRIIVTAAVPEIPE--------ALLEQLKP-GGRLVAPIG 173 (209)
T ss_dssp G--GTTGGG-SEEEEEESSBBSS--H--------HHHHTEEE-EEEEEEEES
T ss_pred h--hccccCCCcCEEEEeeccchHHH--------HHHHhcCC-CcEEEEEEc
Confidence 2 22334578999999988866654 36788999 999998643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=92.94 Aligned_cols=133 Identities=25% Similarity=0.276 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
...|....++.||.+|||.|.|+|.++..|+.+..+ ..++..++.... .+.|+++.+ .++.+ ++....+ |..
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~--~k~A~~Nl~~~~l~d-~v~~~~~---Dv~ 156 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDF--AKTARENLSEFGLGD-RVTLKLG---DVR 156 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHH--HHHHHHHHHHhcccc-ceEEEec---ccc
Confidence 456777789999999999999999999999987755 455555655544 444454444 35444 4555544 444
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEe
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~ 321 (343)
+....+.||+|+. .++++.. +++.+++.||| ||.+++-.+ ... .+...+.|++.||..++.
T Consensus 157 ~~~~~~~vDav~L-----Dmp~PW~--~le~~~~~Lkp-gg~~~~y~P-----~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 157 EGIDEEDVDAVFL-----DLPDPWN--VLEHVSDALKP-GGVVVVYSP-----TVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred ccccccccCEEEE-----cCCChHH--HHHHHHHHhCC-CcEEEEEcC-----CHHHHHHHHHHHHhcCccchhh
Confidence 4444558999977 6888866 99999999999 999876431 111 455666788889976553
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=98.29 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc------cCCCCCCCcEEEecccCCcCCCCCCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP------SQGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~------~~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
....+||+||||+|..+..++++.+...++++++|+.....+ ++.. .....+.++.++.+++.++..- ..+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA--r~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA--RNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH--HhccccchhccccCCCCceEEEECcHHHHHHh-cCC
Confidence 334699999999999998888865556788888887655555 4311 1123345676776655554322 356
Q ss_pred ceeEEEEccccc---cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 254 VYDLIYASAVFL---HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 254 ~fDlIvs~~v~~---hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.||+|++...-. .........+++.+++.|+| ||++++.....+.....-..+.+.++++|+.+.....+
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP-gGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTE-DGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC-CcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 899999874221 12223335689999999999 99998764323221111244678899999988765554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=95.58 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCC-CCCCcEEEecccCCcCCCCCCCce
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGL-LHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~-~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+.+.+||+||||+|..+..++++.+...++++++|+.....+ ++... .+. .+.++.++.++...+... ..++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a--~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC--RKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH--HHHhHHhccccccCCceEEEECchHHHHhh-CCCcc
Confidence 345799999999999999998865556778888887665554 33221 122 244666666654444322 35789
Q ss_pred eEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 256 DLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 256 DlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
|+|++...-.+.+.. ....+++.+++.|+| ||++++.....+........+.+.+++. |..+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~-gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v 215 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKE-DGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIV 215 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCE
Confidence 999986544332222 224588999999999 9999876432222111133344455555 4433
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=90.62 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=92.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-------c----CCCCCCCcEEEecccCC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-------S----QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-------~----~~~~~~~~~~~~~~~~d 245 (343)
+.+.++.+||+.|||.|..+.+|+. .++.|+++|.++..++.+.+.. . .......+.+.+++-.+
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 4455678999999999999999998 5666777777766665442210 0 00112245666664444
Q ss_pred cCCC-CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe-cccc---ccCC--CHHHHHHHHHhc-CCc
Q 019282 246 FTKF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-NIKF---CSRL--GGEECTKRLTSL-GLE 317 (343)
Q Consensus 246 l~~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-~~~~---~~~~--~~~~l~~~L~~a-Gf~ 317 (343)
+... ...+.||+|+-...|+++++..+..+.+.+.++|+| ||.+++.. ..+. ...+ +.+++.+.+... .++
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p-gg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN-NTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC-CcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 4311 123589999999999999999999999999999999 99986542 1111 1122 277888777532 344
Q ss_pred EEE
Q 019282 318 YIG 320 (343)
Q Consensus 318 ~v~ 320 (343)
.+.
T Consensus 194 ~l~ 196 (226)
T PRK13256 194 LID 196 (226)
T ss_pred Eee
Confidence 443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=76.35 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=68.5
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAV 263 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v 263 (343)
+|||+|||+|..+..++. .....++++|++........ +..... ......++..+..+... ...+.||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELAR--KAAAAL-LADNVEVLKGDAEELPP-EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHH--HHHhcc-cccceEEEEcChhhhcc-ccCCceEEEEEccc
Confidence 589999999999998887 44556667776665544443 111111 22244555543333331 13568999999999
Q ss_pred cccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 264 FLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 264 ~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+++. ......+++.+.+.|+| ||.+++.
T Consensus 76 ~~~~-~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107)
T cd02440 76 LHHL-VEDLARFLEEARRLLKP-GGVLVLT 103 (107)
T ss_pred eeeh-hhHHHHHHHHHHHHcCC-CCEEEEE
Confidence 9874 23344589999999999 9999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=102.55 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc---c---CCCCCCCcEEEecccCCcCCCCCCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP---S---QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~---~---~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
+++.+|||||||+|..+..++++.+...++++|+|+.....+ ++.. . ....++++.++.++..++... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a--r~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA--RTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH--HhCCcchhhhccccCCCceEEEEChHHHHHHh-CCC
Confidence 456799999999999999988753326778888877655554 4321 1 112334666666654443322 246
Q ss_pred ceeEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE
Q 019282 254 VYDLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343)
+||+|++.......+. ....++++.+++.||| ||.+++.....+.....-.++.+.+++.||.+
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 8999999754433221 1123488999999999 99998875333322112456788899999943
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=100.17 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+++.+.+.+.+.++.+|||+|||+|.++..+++.. . .++++|.+..+.+.++++.. .+. . ++.++.++..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~--~V~gvD~s~~al~~A~~n~~~~~~-~-~v~~~~~d~~ 355 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--A--EVVGVEGVEAMVERARENARRNGL-D-NVTFYHANLE 355 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--C--EEEEEeCCHHHHHHHHHHHHHcCC-C-ceEEEEeChH
Confidence 35566777776777788999999999999999998853 3 35555555555555554433 232 2 4666666443
Q ss_pred CcC-CCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFT-KFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~-~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+.. ... .+++||+|++.--..- ....++.+.+ ++| ++.+|++.+..-. ..++. .|.+.||++.+.+
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~-~~ivyvSCnp~tl----aRDl~-~L~~~gY~l~~i~ 423 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGP-KRIVYVSCNPATL----ARDAG-VLVEAGYRLKRAG 423 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCC-CeEEEEEeChHHh----hccHH-HHhhCCcEEEEEE
Confidence 321 111 2457999988543321 1235566655 689 8999988532211 22232 4567899999999
Q ss_pred eccccccc-hhH
Q 019282 323 THDSLLFN-HYE 333 (343)
Q Consensus 323 ~~~~l~~~-~~e 333 (343)
..|.+|.. |.|
T Consensus 424 ~~DmFP~T~HvE 435 (443)
T PRK13168 424 MLDMFPHTGHVE 435 (443)
T ss_pred EeccCCCCCcEE
Confidence 99999974 455
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=88.71 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
+.+...+...++++.+|||+|||+|.++..+++... ...++++|+++ .+ . .. .+.++.++..+..
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~-----~-----~~--~i~~~~~d~~~~~ 85 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK-----P-----IE--NVDFIRGDFTDEE 85 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc-----c-----CC--CceEEEeeCCChh
Confidence 334444446678899999999999999999988663 33455666554 22 0 11 2334433222211
Q ss_pred ------CCCCCCceeEEEEccccc--------cCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH
Q 019282 248 ------KFGSGVVYDLIYASAVFL--------HMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343)
Q Consensus 248 ------~~~~~~~fDlIvs~~v~~--------hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343)
.....+.||+|++....+ |... ......+..++++|+| ||++++... ......++...++
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi~~~----~~~~~~~~l~~l~ 160 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVVKVF----QGEEIDEYLNELR 160 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC-CCEEEEEEc----cCccHHHHHHHHH
Confidence 011345799999865422 1111 1234589999999999 999998631 1112344545554
Q ss_pred hcCCcEEE
Q 019282 313 SLGLEYIG 320 (343)
Q Consensus 313 ~aGf~~v~ 320 (343)
. +|..+.
T Consensus 161 ~-~~~~~~ 167 (188)
T TIGR00438 161 K-LFEKVK 167 (188)
T ss_pred h-hhceEE
Confidence 4 364443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-08 Score=95.91 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=91.7
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343)
.+.+..+..-...+...+.+.++.+|||+|||+|..+..+++..+...++++|+++ .+.+.++++.. .+. .+.+
T Consensus 223 ~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~---~~~~ 297 (427)
T PRK10901 223 EGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGL---KATV 297 (427)
T ss_pred CceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCC---CeEE
Confidence 44444454444455555678889999999999999999999876544445555554 44444444333 233 2345
Q ss_pred EecccCCcCCCCCCCceeEEEEcccc------ccCC------ch--------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYASAVF------LHMP------DK--------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~~v~------~hl~------~~--------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
+.++..++......++||.|++.... .+-+ .+ ....+|..+.+.||| ||+++++.- .+
T Consensus 298 ~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvystc-s~ 375 (427)
T PRK10901 298 IVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYATC-SI 375 (427)
T ss_pred EEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeC-CC
Confidence 55544333222224679999954321 1111 11 123589999999999 999987641 11
Q ss_pred ccCCCHHHHHHHHHhc-CCcEEE
Q 019282 299 CSRLGGEECTKRLTSL-GLEYIG 320 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343)
...-+.+.+...++++ +|+.+.
T Consensus 376 ~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 376 LPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred ChhhCHHHHHHHHHhCCCCEEec
Confidence 1122356677777765 676554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=91.41 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
..+.......+..+|||||+|+|.++..+++.+|...+++.|+.. ....+++ ..++.++.+ |+.+-
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---v~~~~~~-------~~rv~~~~g---d~f~~- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE---VIEQAKE-------ADRVEFVPG---DFFDP- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH---HHCCHHH-------TTTEEEEES----TTTC-
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh---hhhcccc-------ccccccccc---cHHhh-
Confidence 455666778878899999999999999999999988777777532 2232222 337777766 44322
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC--cEEEEEec
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD--GRIFVSHN 295 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G--G~lvi~~~ 295 (343)
... +|+|+..+++|+.+++....+|+++++.|+| | |+|+|...
T Consensus 156 ~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p-g~~g~llI~e~ 200 (241)
T PF00891_consen 156 LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKP-GKDGRLLIIEM 200 (241)
T ss_dssp CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE-CTTEEEEEEEE
T ss_pred hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCC-CCCCeEEEEee
Confidence 233 9999999999999999999999999999999 9 99998753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-08 Score=97.77 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=92.4
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343)
.+.|..+..-...+...+.+.++.+|||+|||+|..+.++++..+...++++|++. .+...++++.+ .+.. ..+..
T Consensus 217 ~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~~-~~v~~ 293 (426)
T TIGR00563 217 EGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGLT-IKAET 293 (426)
T ss_pred CCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCCC-eEEEE
Confidence 44454555555566666788889999999999999999999877644455555555 44444443332 3432 12223
Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
..++......+...++||.|++. +++++.++- ....+|.++.++||| ||+++++.- ..
T Consensus 294 ~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystc-s~ 371 (426)
T TIGR00563 294 KDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATC-SV 371 (426)
T ss_pred eccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeC-CC
Confidence 43332222211135689999953 455554441 124589999999999 999987631 01
Q ss_pred ccCCCHHHHHHHHHhc-CCc
Q 019282 299 CSRLGGEECTKRLTSL-GLE 317 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~ 317 (343)
...-+++.+...+++. +|+
T Consensus 372 ~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 372 LPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred ChhhCHHHHHHHHHhCCCCe
Confidence 1111256666777766 454
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=96.11 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
...+...+.+.++++++.+|||||||+|.++..+++..+.. .++++|+++ .+.+.+++... .+. .++.++.++.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~--~nV~~i~gD~ 140 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGI--ENVIFVCGDG 140 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCC--CcEEEEeCCh
Confidence 34466667777788889999999999999999999866532 344555554 44444444322 233 2455665533
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.. ...++||+|++.....+++ ..+.+.|+| ||++++.
T Consensus 141 ~~~~--~~~~~fD~Ii~~~g~~~ip--------~~~~~~Lkp-gG~Lvv~ 179 (322)
T PRK13943 141 YYGV--PEFAPYDVIFVTVGVDEVP--------ETWFTQLKE-GGRVIVP 179 (322)
T ss_pred hhcc--cccCCccEEEECCchHHhH--------HHHHHhcCC-CCEEEEE
Confidence 2222 1235799999976654433 346789999 9998874
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=96.19 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=95.3
Q ss_pred ccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCC
Q 019282 158 NYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKR 235 (343)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~ 235 (343)
|..+.+..+......+...+...++.+|||+|||+|..+.++++..++ ..++++|++. .+...++++.. .|.. +
T Consensus 229 f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~--~ 304 (434)
T PRK14901 229 YEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLK--S 304 (434)
T ss_pred HhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCC--e
Confidence 344445555555555655677888999999999999999999987643 3445555544 44444443333 3332 3
Q ss_pred cEEEecccCCcCCC--CCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhccCCCCcEEEEE
Q 019282 236 PIIVRGEDMDFTKF--GSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 236 ~~~~~~~~~dl~~~--~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.++.++..++... ...+.||.|++. .++++-++.. ...+|.++.+.||| ||+++.+
T Consensus 305 v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvys 383 (434)
T PRK14901 305 IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYA 383 (434)
T ss_pred EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 55665544433311 124689999963 3554444321 24689999999999 9999876
Q ss_pred eccccccCCCHHHHHHHHHhc-CCcEE
Q 019282 294 HNIKFCSRLGGEECTKRLTSL-GLEYI 319 (343)
Q Consensus 294 ~~~~~~~~~~~~~l~~~L~~a-Gf~~v 319 (343)
.-. ....-..+.+...+++. +|+..
T Consensus 384 tcs-i~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 384 TCT-LHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred eCC-CChhhHHHHHHHHHHhCCCcEec
Confidence 310 11111256677777776 57644
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-08 Score=92.04 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.+++.+|||||||+|.++..+++..+...++++++|+.....+ ++.........++.++.++..++..- ..++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A--~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVA--RNHFELPENGERFEVIEADGAEYIAV-HRHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHH--HHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCEE
Confidence 3456789999999999999999888877788888887665554 44332111223566666654443211 24689999
Q ss_pred EEcccccc--CCc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 259 YASAVFLH--MPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 259 vs~~v~~h--l~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++.. ++. .+. .....++++++++|+| ||++++.
T Consensus 141 ~~D~-~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvin 176 (262)
T PRK04457 141 LVDG-FDGEGIIDALCTQPFFDDCRNALSS-DGIFVVN 176 (262)
T ss_pred EEeC-CCCCCCccccCcHHHHHHHHHhcCC-CcEEEEE
Confidence 9753 221 111 1124589999999999 9999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=88.25 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
...++||||.|.|..+..++..+. .+++++++..+ ...-+ +.|+ .+... .+..+ .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~M--r~rL~---~kg~---~vl~~----~~w~~--~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPM--RWRLS---KKGF---TVLDI----DDWQQ--TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHH--HHHHH---hCCC---eEEeh----hhhhc--cCCceEEEee
Confidence 356899999999999999998774 46777766544 33222 2233 22111 22221 3468999999
Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-----------------ccCCC------HHHHHHHHHhcCCc
Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-----------------CSRLG------GEECTKRLTSLGLE 317 (343)
Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-----------------~~~~~------~~~l~~~L~~aGf~ 317 (343)
.+++....++.. .|+.+++.|+| +|+++++.-.+| ....+ ...+.+.++.+||+
T Consensus 158 LNvLDRc~~P~~--LL~~i~~~l~p-~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~ 234 (265)
T PF05219_consen 158 LNVLDRCDRPLT--LLRDIRRALKP-NGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFE 234 (265)
T ss_pred hhhhhccCCHHH--HHHHHHHHhCC-CCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCE
Confidence 999999888876 99999999999 999988721111 01111 34455778999999
Q ss_pred EEEeeec
Q 019282 318 YIGKKTH 324 (343)
Q Consensus 318 ~v~~~~~ 324 (343)
++.-...
T Consensus 235 v~~~tr~ 241 (265)
T PF05219_consen 235 VERWTRL 241 (265)
T ss_pred EEEEecc
Confidence 8875543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-08 Score=88.82 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC--
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD-- 245 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d-- 245 (343)
+..|...+++.||.+|||.|.|+|.++..|++...+. .++-.++ .......|++..+ .++ ..++.+...+...
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~--~~~~~~~A~~n~~~~gl-~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF--REDRAEKARKNFERHGL-DDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES--SHHHHHHHHHHHHHTTC-CTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc--CHHHHHHHHHHHHHcCC-CCCceeEecceeccc
Confidence 4567777999999999999999999999999887543 3444444 4455555554444 444 4466666654321
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhcc-CCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEee
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKL-RPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~L-kP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~~ 322 (343)
+. -..+..+|.|+. .+|++.. ++..+.++| || ||++++-.+ ... .....+.|++.||..++..
T Consensus 106 ~~-~~~~~~~DavfL-----Dlp~Pw~--~i~~~~~~L~~~-gG~i~~fsP-----~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 106 FD-EELESDFDAVFL-----DLPDPWE--AIPHAKRALKKP-GGRICCFSP-----CIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp -S-TT-TTSEEEEEE-----ESSSGGG--GHHHHHHHE-EE-EEEEEEEES-----SHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cc-ccccCcccEEEE-----eCCCHHH--HHHHHHHHHhcC-CceEEEECC-----CHHHHHHHHHHHHHCCCeeeEEE
Confidence 21 112467999876 7888876 999999999 89 998876431 111 4556778889999887644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-08 Score=92.22 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-c--CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-S--QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~--~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
++..+||+||||.|..+..++++.+..+++++++|+.....+ ++.. . .+..+.++.++.++...+..-..++.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a--r~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS--KKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH--HHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 456799999999999999998864446778888887555544 3322 1 2334557777776544432211246899
Q ss_pred EEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 257 LIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 257 lIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
+|++...-.+.+.. ....+++.++++|+| ||+++......+........+.+.+.+.....+
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p-gGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v 231 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRP-GGVVCTQAESMWLHMDLIEDLIAICRETFKGSV 231 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEECcCCcccchHHHHHHHHHHHHHCCCce
Confidence 99986544332221 234589999999999 999976543233221113344555655543333
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=90.89 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=71.8
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CC---C
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KF---G 250 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~---~ 250 (343)
....+..+|||||||+|..+..++...+. ..++.+|+++ ...+.++++.+ .++. .++.++.++..+.. .+ .
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCC
Confidence 34556779999999999999999887653 4455555555 44454555433 4443 46777777554431 11 1
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..++||+|+.... .+....+++.+.++|+| ||.+++.
T Consensus 141 ~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~-GG~ii~d 177 (234)
T PLN02781 141 PKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKV-GGIIAFD 177 (234)
T ss_pred CCCCCCEEEECCC-----HHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 2468999988532 23344589999999999 9988764
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=87.87 Aligned_cols=141 Identities=17% Similarity=0.212 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC-CCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS-GVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~fD 256 (343)
....+||||.||.|+..+......+. ..+...|.++ ...+..++..++....+...+.++++.|...+.. +-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 45679999999999999998887775 4555566555 4444445554433334355788888777665542 34579
Q ss_pred EEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEe---c----------------cccc-cCCCHHHHHHHHHhcC
Q 019282 257 LIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSH---N----------------IKFC-SRLGGEECTKRLTSLG 315 (343)
Q Consensus 257 lIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~---~----------------~~~~-~~~~~~~l~~~L~~aG 315 (343)
+++.+.+++.+++.. ....|.-+.+++.| ||+++.+. + .++. ++.+..++.++.+++|
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p-gG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG 290 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEP-GGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG 290 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCC-CcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence 999999999999865 44579999999999 99999872 1 1111 2223889999999999
Q ss_pred CcEEEeee
Q 019282 316 LEYIGKKT 323 (343)
Q Consensus 316 f~~v~~~~ 323 (343)
|+-+....
T Consensus 291 F~K~~q~I 298 (311)
T PF12147_consen 291 FEKIDQRI 298 (311)
T ss_pred Cchhhhee
Confidence 98655443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=84.32 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=71.7
Q ss_pred EcChhHHHHHHHHhccc-CC-CCCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcE
Q 019282 212 ERDELSLMAAFRYELPS-QG-LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR 289 (343)
Q Consensus 212 did~s~~~~a~a~~~~~-~~-~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~ 289 (343)
++|.+..|.+.++++.. .+ ....++.++.++..+++ + .+++||+|++..+++++++... .|++++|+||| ||.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~-~~~~fD~v~~~~~l~~~~d~~~--~l~ei~rvLkp-GG~ 76 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-F-DDCEFDAVTMGYGLRNVVDRLR--AMKEMYRVLKP-GSR 76 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-C-CCCCeeEEEecchhhcCCCHHH--HHHHHHHHcCc-CeE
Confidence 34555555555543221 11 11225677777666665 3 3678999999999999988765 99999999999 999
Q ss_pred EEEEeccc------------------------------c-------ccCCCHHHHHHHHHhcCCcEEEee
Q 019282 290 IFVSHNIK------------------------------F-------CSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 290 lvi~~~~~------------------------------~-------~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+++.+... + .....++++.++|+++||+.+...
T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 98762110 0 011238899999999999987644
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=94.97 Aligned_cols=155 Identities=17% Similarity=0.056 Sum_probs=90.7
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPI 237 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~ 237 (343)
.+.+..++.-...+...+.+.++.+|||+|||+|..+..+++.. +...++++|++.. +...++++.+ .+. . .+.
T Consensus 229 ~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~~~~g~-~-~v~ 304 (444)
T PRK14902 229 DGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENAKRLGL-T-NIE 304 (444)
T ss_pred CceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHHcCC-C-eEE
Confidence 34343444444445555677888999999999999999999876 3344555555554 4444444333 333 2 355
Q ss_pred EEecccCCcCCCCCCCceeEEEEccc------cccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccc
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAV------FLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIK 297 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v------~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~ 297 (343)
++.++..++... ..+.||+|++..- +.+-++. ....+|+.+.++||| ||.++.+.-.-
T Consensus 305 ~~~~D~~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs~ 382 (444)
T PRK14902 305 TKALDARKVHEK-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK-GGILVYSTCTI 382 (444)
T ss_pred EEeCCcccccch-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEcCCC
Confidence 665544333211 1268999997532 2221111 113579999999999 99998653111
Q ss_pred cccCCCHHHHHHHHHhc-CCcEEEe
Q 019282 298 FCSRLGGEECTKRLTSL-GLEYIGK 321 (343)
Q Consensus 298 ~~~~~~~~~l~~~L~~a-Gf~~v~~ 321 (343)
+ ..-....+...+++. +|+.+..
T Consensus 383 ~-~~Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 383 E-KEENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred C-hhhhHHHHHHHHHhCCCcEEecc
Confidence 1 111245566667766 4776553
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=89.92 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cC--CCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQ--GLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~--~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.+||+||||+|.++..+++..+...++++++|+.....+ ++.. .. ...+.++.++.++...+... ..++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a--~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELS--KKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHH--HHHhHhhcccccCCceEEEECchHHHHHh-CCCCccE
Confidence 34599999999999999888765456678888887655444 3321 11 12223444444432222211 2468999
Q ss_pred EEEccccccCCchH--HHHHHHHHHhccCCCCcEEEEEe
Q 019282 258 IYASAVFLHMPDKL--VWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 258 Ivs~~v~~hl~~~~--~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
|++......-+... ...+++.+++.|+| ||++++..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~p-gG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNE-DGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCC-CcEEEEcC
Confidence 99865532222211 34589999999999 99998864
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-08 Score=93.19 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc-cCCCCC------CCcEEEecccCC--cCC-CC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP-SQGLLH------KRPIIVRGEDMD--FTK-FG 250 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~-~~~~~~------~~~~~~~~~~~d--l~~-~~ 250 (343)
++.+|||+|||-|+.+...... ....+.++|++...+..+..+-.. ..+... -...++.++... +.+ +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7789999999999887777653 345677788777776665443200 011000 022344442221 111 22
Q ss_pred C-CCceeEEEEccccccC--CchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 S-GVVYDLIYASAVFLHM--PDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~-~~~fDlIvs~~v~~hl--~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. ...||+|.|.+.+|+. .......+|+.+.+.|+| ||+++.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~-GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP-GGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 2 2599999999999987 445566799999999999 9999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=86.39 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=68.3
Q ss_pred CCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
...++. .++|+|||+|..++.++.++. . ++++|.+..|...+++................+..++.. .+++.|
T Consensus 29 ~~~~~h~~a~DvG~G~Gqa~~~iae~~k--~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SVD 102 (261)
T KOG3010|consen 29 SRTEGHRLAWDVGTGNGQAARGIAEHYK--E--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESVD 102 (261)
T ss_pred hhCCCcceEEEeccCCCcchHHHHHhhh--h--heeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCccee
Confidence 334444 799999999988888888653 3 555555556666555543322222222333222233332 368999
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|++...+|++.-+. +++.++|+||+ +|-++..
T Consensus 103 lI~~Aqa~HWFdle~---fy~~~~rvLRk-~Gg~iav 135 (261)
T KOG3010|consen 103 LITAAQAVHWFDLER---FYKEAYRVLRK-DGGLIAV 135 (261)
T ss_pred eehhhhhHHhhchHH---HHHHHHHHcCC-CCCEEEE
Confidence 999999998886543 79999999999 7744333
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=91.19 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+++.+.+.+...++.+|||+|||+|.++..++.. +..++++|.+..+.+.+++... .+. .++.++.++..
T Consensus 158 ~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~----~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~ 231 (315)
T PRK03522 158 AAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP----GMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDST 231 (315)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHH
Confidence 3445555544444335689999999999999999883 2345555555555555554433 333 25667776544
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
++... ..+.||+|++.---.-+.. .+++. ...++| ++.++++.+.... ..++.. | .||+....+..
T Consensus 232 ~~~~~-~~~~~D~Vv~dPPr~G~~~----~~~~~-l~~~~~-~~ivyvsc~p~t~----~rd~~~-l--~~y~~~~~~~~ 297 (315)
T PRK03522 232 QFATA-QGEVPDLVLVNPPRRGIGK----ELCDY-LSQMAP-RFILYSSCNAQTM----AKDLAH-L--PGYRIERVQLF 297 (315)
T ss_pred HHHHh-cCCCCeEEEECCCCCCccH----HHHHH-HHHcCC-CeEEEEECCcccc----hhHHhh-c--cCcEEEEEEEe
Confidence 43311 2357999998733211111 13333 344788 8888887542221 334443 3 69999999999
Q ss_pred cccccc-hhH
Q 019282 325 DSLLFN-HYE 333 (343)
Q Consensus 325 ~~l~~~-~~e 333 (343)
|.+|.. |.|
T Consensus 298 DmFP~T~HvE 307 (315)
T PRK03522 298 DMFPHTAHYE 307 (315)
T ss_pred ccCCCCCeEE
Confidence 999974 454
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=93.90 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=91.7
Q ss_pred ccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCC
Q 019282 158 NYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKR 235 (343)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~ 235 (343)
|..+.+..+......+...+.+.++.+|||+|||+|..+.+++...++ ..++++|++. .+.+..+++.+ .+. . +
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~-~-~ 289 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKL-S-S 289 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCC-C-e
Confidence 334444444444444444567888999999999999999999987643 3455555555 44444444333 333 2 3
Q ss_pred cEEEecccCCcCCCCCCCceeEEEEcc------ccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEec
Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASA------VFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~------v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+.+..++..++..+ ..+.||.|++.. ++..-++- ....+|..+.+.||| ||.++.+.-
T Consensus 290 v~~~~~Da~~l~~~-~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTC 367 (431)
T PRK14903 290 IEIKIADAERLTEY-VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTC 367 (431)
T ss_pred EEEEECchhhhhhh-hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 55555544444322 246899999732 22221211 124579999999999 999987641
Q ss_pred cccccCCCHHHHHHHHHhc-CCcEEE
Q 019282 296 IKFCSRLGGEECTKRLTSL-GLEYIG 320 (343)
Q Consensus 296 ~~~~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343)
. ....-..+.+...|++. +|+.+.
T Consensus 368 s-~~~eEne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 368 T-VTKEENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred C-CChhhCHHHHHHHHHhCCCcEEec
Confidence 1 11111256666666654 576544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=93.42 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
.....+...++.+|||+|||+|..+.++++..... ..++++|.+..+.+.++++.. .|. . ++.++.++..++ .
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~-~-~v~~~~~Da~~~---~ 314 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGI-T-IIETIEGDARSF---S 314 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCC-C-eEEEEeCccccc---c
Confidence 34344677788999999999999999998866432 245555555555555554433 333 2 455565543333 2
Q ss_pred CCCceeEEEEc------cccc-------cCCch-------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 251 SGVVYDLIYAS------AVFL-------HMPDK-------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 251 ~~~~fDlIvs~------~v~~-------hl~~~-------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
.+++||+|++. .++. +.... ....+|..+.+.||| ||+++++.-.-. ..-..+.+...
T Consensus 315 ~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvystcs~~-~~Ene~~v~~~ 392 (445)
T PRK14904 315 PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYATCSIE-PEENELQIEAF 392 (445)
T ss_pred cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC-hhhHHHHHHHH
Confidence 35689999962 1221 11111 123589999999999 999988641000 01114556677
Q ss_pred HHhc-CCcEEE
Q 019282 311 LTSL-GLEYIG 320 (343)
Q Consensus 311 L~~a-Gf~~v~ 320 (343)
|+++ +|+.+.
T Consensus 393 l~~~~~~~~~~ 403 (445)
T PRK14904 393 LQRHPEFSAEP 403 (445)
T ss_pred HHhCCCCEEec
Confidence 7766 576543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=81.79 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
+.+.+.+.+.++.+|||||||+|.++..+++. ...++++|++.... ..++++... ..++.++.++..++. +
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~--~~~~~~~~~---~~~v~ii~~D~~~~~-~- 73 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLA--PRLREKFAA---ADNLTVIHGDALKFD-L- 73 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHH--HHHHHHhcc---CCCEEEEECchhcCC-c-
Confidence 44555667888889999999999999999985 24566666665444 433433221 225566666444433 2
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhc--cCCCCcEEEEEe
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASK--LRPYDGRIFVSH 294 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~--LkP~GG~lvi~~ 294 (343)
.+..||.|+++..+ |+..+ .+.++.+. +.+ +|.+++..
T Consensus 74 ~~~~~d~vi~n~Py-~~~~~----~i~~~l~~~~~~~-~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPY-NISTP----ILFKLLEEPPAFR-DAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCc-ccHHH----HHHHHHhcCCCcc-eEEEEEEH
Confidence 23469999998666 44443 33333332 447 78887763
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=82.68 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCccchHHHHHHHHHh------cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC--
Q 019282 160 GEPWAGGRDVFEFLAEA------SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-- 231 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~------~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-- 231 (343)
...|+.+..+.+++... ....++.+|||+|||+|..++.++...+...++.+|.+. .+... +.+.+.+.
T Consensus 18 ~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l--~~Ni~~N~~~ 94 (173)
T PF10294_consen 18 GKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELL--RRNIELNGSL 94 (173)
T ss_dssp -----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHH--HHHHHTT---
T ss_pred EEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHH--HHHHHhcccc
Confidence 34577677777777763 345678899999999999999998865667888999887 32222 22222211
Q ss_pred CCCCcEEEecccCC-c-CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 232 LHKRPIIVRGEDMD-F-TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 232 ~~~~~~~~~~~~~d-l-~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
....+....-+..+ . .+......||+|++..++..- .....+++.+.++|+| +|.+++++.
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~-~~~vl~~~~ 157 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKP-NGKVLLAYK 157 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT--TTEEEEEE
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCC-CCEEEEEeC
Confidence 22233333221111 1 001124589999999999653 3445599999999999 998888753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=86.40 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=79.4
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
.+.+.++.+|||+|||+|..+..+++...+.+ .++++|.+..+.+..+++.+ .+. . ++.++..+..++.. ..+.
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g-~v~a~D~~~~~l~~~~~n~~~~g~-~-~v~~~~~D~~~~~~--~~~~ 140 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEG-AIVANEFSKSRTKVLIANINRCGV-L-NVAVTNFDGRVFGA--AVPK 140 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCC-EEEEEcCCHHHHHHHHHHHHHcCC-C-cEEEecCCHHHhhh--hccC
Confidence 46778899999999999999999998765432 35555555555554444433 333 2 34555543333321 2346
Q ss_pred eeEEEEcc------ccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 255 YDLIYASA------VFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 255 fDlIvs~~------v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
||.|++.. ++.+-++. ....+|+.+.+.||| ||+++.+.-. ....-.++.+...|++.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYstcs-~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYSTCS-LEPEENEAVVDYLLEKR 218 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCC-CChHHHHHHHHHHHHhC
Confidence 99999632 22221111 123589999999999 9999876310 00001144455556554
Q ss_pred -CCc
Q 019282 315 -GLE 317 (343)
Q Consensus 315 -Gf~ 317 (343)
+|.
T Consensus 219 ~~~~ 222 (264)
T TIGR00446 219 PDVV 222 (264)
T ss_pred CCcE
Confidence 454
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-07 Score=97.05 Aligned_cols=131 Identities=15% Similarity=0.200 Sum_probs=84.7
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-C--------------CCCCcEEEecccCCc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-L--------------LHKRPIIVRGEDMDF 246 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~--------------~~~~~~~~~~~~~dl 246 (343)
+.+|||+|||+|.+++.++...+...++++|+++.....+..+ ...+ + ...++.++.++..+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N--a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN--LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH--HHHcCcccccccccccccccccccEEEEECchhhh
Confidence 4689999999999999999987766677777777666555443 2211 1 112566676633222
Q ss_pred CCCCC-CCceeEEEEccccc--------------cCC-------------------ch---HHHHHHHHHHhccCCCCcE
Q 019282 247 TKFGS-GVVYDLIYASAVFL--------------HMP-------------------DK---LVWVGLERLASKLRPYDGR 289 (343)
Q Consensus 247 ~~~~~-~~~fDlIvs~~v~~--------------hl~-------------------~~---~~~~~L~~l~r~LkP~GG~ 289 (343)
... ..+||+|+++--.- |-| ++ -...++.+..++|+| ||.
T Consensus 197 --~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-gG~ 273 (1082)
T PLN02672 197 --CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-MGI 273 (1082)
T ss_pred --ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-CCE
Confidence 111 23699999973211 100 00 113467788889999 999
Q ss_pred EEEEeccccccCCCHHHHH-HHHHhcCCcEEEee
Q 019282 290 IFVSHNIKFCSRLGGEECT-KRLTSLGLEYIGKK 322 (343)
Q Consensus 290 lvi~~~~~~~~~~~~~~l~-~~L~~aGf~~v~~~ 322 (343)
+++..+... .+.+. +++++.||+.+...
T Consensus 274 l~lEiG~~q-----~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 274 MIFNMGGRP-----GQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred EEEEECccH-----HHHHHHHHHHHCCCCeeEEe
Confidence 999875221 45677 68999999887644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=85.30 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=75.3
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEe-cccCCcCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVR-GEDMDFTKF 249 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~-~~~~dl~~~ 249 (343)
|.......+.++|||||++.|.-+++++..++ +..++.+++++.. ...++++.+ .+..+ ++.++. ++..+...-
T Consensus 51 L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~--~~~A~~n~~~ag~~~-~i~~~~~gdal~~l~~ 127 (219)
T COG4122 51 LRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEER--AEIARENLAEAGVDD-RIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHH--HHHHHHHHHHcCCcc-eEEEEecCcHHHHHHh
Confidence 33334556778999999999999999999998 4445556555544 444455433 55544 455555 344443321
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...++||+|+.-.-- ...+.+|+.+.++|+| ||.+++-
T Consensus 128 ~~~~~fDliFIDadK-----~~yp~~le~~~~lLr~-GGliv~D 165 (219)
T COG4122 128 LLDGSFDLVFIDADK-----ADYPEYLERALPLLRP-GGLIVAD 165 (219)
T ss_pred ccCCCccEEEEeCCh-----hhCHHHHHHHHHHhCC-CcEEEEe
Confidence 236899999885322 3344589999999999 9988764
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=82.49 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=83.1
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc-CCCCCCCceeEEEEcc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF-TKFGSGVVYDLIYASA 262 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl-~~~~~~~~fDlIvs~~ 262 (343)
.+||||||.|.+...+|...|...+.++++.......+..+. ...++ .++.++.+++..+ ..+..+++.|.|+..+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~-~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKA-EKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHH-HHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHH-Hhhcc--cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 899999999999999999998888777777776655554332 22333 3677777766663 3333468999998854
Q ss_pred ccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh--cCCcEEE
Q 019282 263 VFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS--LGLEYIG 320 (343)
Q Consensus 263 v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~--aGf~~v~ 320 (343)
-=-|.... -...+++.+.++|+| ||.+.+......+ .+.+.+.++. .+|+.+.
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~-gG~l~~~TD~~~y----~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKP-GGELYFATDVEEY----AEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEE-EEEEEEEES-HHH----HHHHHHHHHHHSTTEEEE-
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCC-CCEEEEEeCCHHH----HHHHHHHHHhcCcCeEEcc
Confidence 33222211 123689999999999 9999887532222 3456666766 3888774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=92.54 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
.+.+++.+.+.+.+.++.+|||+|||+|.++..+++.. .. ++++|.+..+.+.++++...+.. .++.++.++..+
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~--V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA--KS--VVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CE--EEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHH
Confidence 44566666666677778899999999999999998753 23 45555555555555544332222 256677765433
Q ss_pred c-CCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 246 F-TKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 246 l-~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+ ..+. .++.||+|++.-.-. +- ...+++.+.+ ++| ++.++++.+.. +...-.+.|.+.||+......
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~--G~--~~~~l~~l~~-l~~-~~ivyvsc~p~-----tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRK--GC--AAEVLRTIIE-LKP-ERIVYVSCNPA-----TLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCC--CC--CHHHHHHHHh-cCC-CEEEEEcCCHH-----HHHHHHHHHHHCCeeEEEEEE
Confidence 2 1111 235799998743211 10 1235666554 889 88888874311 111123457788999999999
Q ss_pred ccccccc
Q 019282 324 HDSLLFN 330 (343)
Q Consensus 324 ~~~l~~~ 330 (343)
.|++|..
T Consensus 421 ~DmFP~T 427 (431)
T TIGR00479 421 VDMFPHT 427 (431)
T ss_pred eccCCCC
Confidence 9998863
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=87.35 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=73.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC---
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG--- 250 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~--- 250 (343)
....+..+|||||||+|..++.++...+..+ ++.++.++ .....+++..+ .|.. .++.++.+++.+.. .+.
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcc
Confidence 3455677999999999999999998776433 44445554 54555555443 5554 47777777555432 111
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..++||+|+.-.- ......+++.+.++|+| ||.+++-
T Consensus 191 ~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~-GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDAD-----KRMYQDYFELLLQLVRV-GGVIVMD 227 (278)
T ss_pred cCCCCCEEEECCC-----HHHHHHHHHHHHHhcCC-CcEEEEe
Confidence 1368999988542 34455699999999999 9998775
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-07 Score=82.51 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=87.6
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-----C-CC-------------------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-----G-LL------------------- 232 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-----~-~~------------------- 232 (343)
....+..+|||||..|.++..+++.+.+..+.++|||+.....|.. ..+. . ..
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark--~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK--EIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH--hccccccccccccCCCcccccccccccccccc
Confidence 3445678999999999999999999988888888888877666633 2110 0 00
Q ss_pred ---------CCCcEEEec----ccCCcCCCCCCCceeEEEEccccc--cC--CchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 233 ---------HKRPIIVRG----EDMDFTKFGSGVVYDLIYASAVFL--HM--PDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 233 ---------~~~~~~~~~----~~~dl~~~~~~~~fDlIvs~~v~~--hl--~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
..++.+... ...|+.+. ....||+|.|-.+-- |+ +|+....+|.++.++|.| ||+|++.-.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p-gGiLvvEPQ 210 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP-GGILVVEPQ 210 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-CcEEEEcCC
Confidence 001111110 01122212 346799999854332 33 667788899999999999 999999720
Q ss_pred ------------ccccc-----CCCHHHHHHHHHhc--CCcEEE
Q 019282 296 ------------IKFCS-----RLGGEECTKRLTSL--GLEYIG 320 (343)
Q Consensus 296 ------------~~~~~-----~~~~~~l~~~L~~a--Gf~~v~ 320 (343)
..... .+.++....++.+. ||+.+.
T Consensus 211 pWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 211 PWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred chHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 01111 12277777777665 666543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=88.75 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=89.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+++.+.+.+...++.+|||+|||+|.+++.++.. ...++++|+++.....+ +++.+ .+. . ++.++.++..
T Consensus 218 ~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a--~~N~~~~~~-~-~~~~~~~d~~ 291 (374)
T TIGR02085 218 AAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACA--QQSAQMLGL-D-NLSFAALDSA 291 (374)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHH--HHHHHHcCC-C-cEEEEECCHH
Confidence 3444555544444345679999999999999999863 23455555555554444 44333 233 2 5666666443
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
++... ..+.||+|++.---..+. ..+++.+. .++| ++.++++.+..-. ..++.. | .||+....+.+
T Consensus 292 ~~~~~-~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p-~~ivyvsc~p~Tl----aRDl~~-L--~gy~l~~~~~~ 357 (374)
T TIGR02085 292 KFATA-QMSAPELVLVNPPRRGIG----KELCDYLS-QMAP-KFILYSSCNAQTM----AKDIAE-L--SGYQIERVQLF 357 (374)
T ss_pred HHHHh-cCCCCCEEEECCCCCCCc----HHHHHHHH-hcCC-CeEEEEEeCHHHH----HHHHHH-h--cCceEEEEEEe
Confidence 33211 124699999875432222 12555564 4799 9999998642211 233443 3 79999999999
Q ss_pred ccccc-chhH
Q 019282 325 DSLLF-NHYE 333 (343)
Q Consensus 325 ~~l~~-~~~e 333 (343)
|++|. .|.|
T Consensus 358 DmFPqT~HvE 367 (374)
T TIGR02085 358 DMFPHTSHYE 367 (374)
T ss_pred ccCCCCCcEE
Confidence 99997 4455
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=85.43 Aligned_cols=128 Identities=15% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
-.+..|||+|||+|.++...+.+ +..+++.++- ..|..+++++.+.+....++..+.|..++.+ ..++.|+|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA---S~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---LPEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA---SEMAQYARKLVASNNLADRITVIPGKIEDIE---LPEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh-CcceEEEEeh---hHHHHHHHHHHhcCCccceEEEccCcccccc---CchhccEEE
Confidence 35778999999999998877764 3345555543 3477777777666666678888988666655 457899999
Q ss_pred EccccccC-CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCC
Q 019282 260 ASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGL 316 (343)
Q Consensus 260 s~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf 316 (343)
+--+=..+ .+..+.++ -..++.||| .|..+-+++.-+...+. +.-+.+.+.++.|
T Consensus 249 SEPMG~mL~NERMLEsY-l~Ark~l~P-~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnF 305 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESY-LHARKWLKP-NGKMFPTVGDIHLAPFSDEQLYVEQFNKANF 305 (517)
T ss_pred eccchhhhhhHHHHHHH-HHHHhhcCC-CCcccCcccceeecccchHHHHHHHHhhhhh
Confidence 86444333 34444333 345699999 99999886655555555 4445566666666
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=83.58 Aligned_cols=143 Identities=17% Similarity=0.122 Sum_probs=90.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
...+.+.+|||...|-|.+++..++.- ...+.-+..|+.-+.. +.-+.. .++....+.++.+++.++-.-..+.+|
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeL--a~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLEL--AKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEe--eccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 345679999999999999999887731 1233444445544443 343333 334343556677765554322257889
Q ss_pred eEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc--ccCC-CHHHHHHHHHhcCCcEEEeee
Q 019282 256 DLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--CSRL-GGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 256 DlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--~~~~-~~~~l~~~L~~aGf~~v~~~~ 323 (343)
|+|+-.- -|.+-+.-...++.++++|+||| ||+++=-.+.+- +... -+..+.++|+++||++++...
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkr-gGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKR-GGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCc-CCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 9998631 22233344556689999999999 999964332221 2212 278888999999999887553
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.7e-07 Score=81.00 Aligned_cols=125 Identities=14% Similarity=0.245 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcC---CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLN---PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~---~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.+|||+|||+|.++..+++... ...++++++|+.....+ +++. . ...+..+ |+.....+++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~A--r~n~----~--~~~~~~~---D~~~~~~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLG--KRIV----P--EATWINA---DALTTEFDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHH--Hhhc----c--CCEEEEc---chhcccccCCccE
Confidence 367999999999999999987642 34566777776555544 4321 1 2344544 4433334568999
Q ss_pred EEEccccccCC----------chHHHHHHHHHHhccCCCCcEEEEE-----eccccccCC------CHHHHHHHHHhcCC
Q 019282 258 IYASAVFLHMP----------DKLVWVGLERLASKLRPYDGRIFVS-----HNIKFCSRL------GGEECTKRLTSLGL 316 (343)
Q Consensus 258 Ivs~~v~~hl~----------~~~~~~~L~~l~r~LkP~GG~lvi~-----~~~~~~~~~------~~~~l~~~L~~aGf 316 (343)
|+++--+.-.. ......++++..++++| |+ +++- +......+| +..++.++.++.|+
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~-~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQ-GT-FIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGL 195 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCC-CE-EEeCcccccCcccCccceeeccCcccHHHHHHHHhcCe
Confidence 99986665221 12233478888887776 55 5442 222223333 36778889999998
Q ss_pred cE
Q 019282 317 EY 318 (343)
Q Consensus 317 ~~ 318 (343)
..
T Consensus 196 ~~ 197 (241)
T PHA03412 196 EM 197 (241)
T ss_pred ee
Confidence 63
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=96.69 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||+|||+|.++..++.. +... ++.+|.+..+.+.++++.+ .+....++.++.++..++... ..++||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~--V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKS--TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCE--EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-cCCCcCEE
Confidence 35789999999999999999873 2233 4445555555555555444 333223567777755443211 14689999
Q ss_pred EEcccccc-------C--CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 259 YASAVFLH-------M--PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 259 vs~~v~~h-------l--~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
++.--..- . .......++..+.++|+| ||.++++..... +.. -.+.+.++|+++.....
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~~~~~~---~~~--~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFSNNKRG---FKM--DEEGLAKLGLKAEEITA 680 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEEeCCcc---CCh--hHHHHHhCCCeEEEEec
Confidence 99632210 0 011234578889999999 999988753221 112 26678889988766553
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=84.95 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=71.8
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CC---C
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FG---S 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~---~ 251 (343)
...+..+||||||++|..+..+++.++. ..++.+++++ .....+++..+ .++ ..++.++.+++.+... +. .
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~-~~~I~~~~gda~~~l~~l~~~~~ 118 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGL-DDRIEVIEGDALEVLPELANDGE 118 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTG-GGGEEEEES-HHHHHHHHHHTTT
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCC-CCcEEEEEeccHhhHHHHHhccC
Confidence 3345669999999999999999998864 4455555555 45555555443 444 3477888776655321 11 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++||+|+.-.. ......+++.+.++|+| ||.+++-
T Consensus 119 ~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~-ggvii~D 154 (205)
T PF01596_consen 119 EGQFDFVFIDAD-----KRNYLEYFEKALPLLRP-GGVIIAD 154 (205)
T ss_dssp TTSEEEEEEEST-----GGGHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCceeEEEEccc-----ccchhhHHHHHhhhccC-CeEEEEc
Confidence 358999998643 23344589999999999 8888775
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=80.74 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHH----HHc---CC--CceEEEEcChhHHHHHHHHhccc---CCCCC--------------
Q 019282 180 TPNSHVLEIGCGTLRVGVHFI----RYL---NP--ENFHCLERDELSLMAAFRYELPS---QGLLH-------------- 233 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la----~~~---~~--~~~~vvdid~s~~~~a~a~~~~~---~~~~~-------------- 233 (343)
.+..+|+..||+||.-.-.++ +.. .. ..+.++|+|...+..|.+-.-.. .+++.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356799999999997554443 311 11 24566777776665553211111 11100
Q ss_pred --------CCcEEEecccCCcCC-CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 234 --------KRPIIVRGEDMDFTK-FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 234 --------~~~~~~~~~~~dl~~-~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
..+.+... ++.+ .+..+.||+|+|.+|+.++.++....+++.+++.|+| ||.|++.+.
T Consensus 110 ~~v~~~lr~~V~F~~~---NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p-gG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRH---NLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP-GGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE-----TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE-EEEEEE-TT
T ss_pred eeEChHHcCceEEEec---ccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC-CCEEEEecC
Confidence 23344433 3333 3356799999999999999999889999999999999 999999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=81.92 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=70.5
Q ss_pred CCeEEEEcCCcCHHHHHHH----HHcCC----CceEEEEcChhHHHHHHHHhccc---CCCC------------------
Q 019282 182 NSHVLEIGCGTLRVGVHFI----RYLNP----ENFHCLERDELSLMAAFRYELPS---QGLL------------------ 232 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la----~~~~~----~~~~vvdid~s~~~~a~a~~~~~---~~~~------------------ 232 (343)
..||+..||+||--.-.+| +..+. ..+.++|||...+..+.+-.... .+++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999997554443 32221 23556666665555443211000 0000
Q ss_pred -------CCCcEEEecccCCcCC--CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 233 -------HKRPIIVRGEDMDFTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 233 -------~~~~~~~~~~~~dl~~--~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
-..+.+... ++.+ ++..+.||+|+|.+++.|+.++....+++++++.|+| ||+|++.+.
T Consensus 196 ~~v~~~lr~~V~F~~~---NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p-gG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQL---NLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP-DGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcc---cCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC-CcEEEEeCc
Confidence 012333332 4433 2235789999999999999888888899999999999 999998864
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-07 Score=85.94 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=78.5
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSG 252 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 252 (343)
+....++-+++.|||||||||.++...+++. ... +.+++.+... ..+.+....+...+.+.++++..+++. ++ .
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~--V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP-~ 125 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAG-ARK--VYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LP-V 125 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhC-cce--EEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cC-c
Confidence 4444556788999999999999999888864 334 5555554443 555555554455557788888777773 53 5
Q ss_pred CceeEEEEccccccCC-chHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMP-DKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~-~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++.|+|++-++=..+- +....++|-.=-+.|+| ||.++-.
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~-~G~i~P~ 166 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKE-GGLIYPD 166 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCC-CceEccc
Confidence 7999999966554442 33445567777789999 9998643
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=79.24 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC--
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-- 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-- 245 (343)
.+++.+....+.+ +..|||+|||+|..++.++..+++..++++|++ ......+.++.......+++..+.. .+.
T Consensus 136 ~Vid~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S--~~Ai~La~eN~qr~~l~g~i~v~~~-~me~d 211 (328)
T KOG2904|consen 136 AVIDALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS--KAAIKLAKENAQRLKLSGRIEVIHN-IMESD 211 (328)
T ss_pred HHHHHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCCceEEEEecc--HHHHHHHHHHHHHHhhcCceEEEec-ccccc
Confidence 3455555444444 448999999999999999998885555555554 4555555544332222224433321 111
Q ss_pred -cCCC-CCCCceeEEEEccccccCCc------------------------hHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 246 -FTKF-GSGVVYDLIYASAVFLHMPD------------------------KLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 246 -l~~~-~~~~~fDlIvs~~v~~hl~~------------------------~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+... ...+++|+++++--+-.-.+ +....++.-..|.|+| ||.+++...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~-gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP-GGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc-CCeEEEEec
Confidence 1111 24589999999843311110 1123567778899999 999988753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=76.41 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..++++|. ..+++..|-|+|||.+.++..+. .+++|...|... .++.+ +.++....
T Consensus 61 d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-----~~~~V~SfDLva--------------~n~~V--tacdia~v 116 (219)
T PF05148_consen 61 DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-----NKHKVHSFDLVA--------------PNPRV--TACDIANV 116 (219)
T ss_dssp HHHHHHHC---TS-TTS-EEEES-TT-HHHHH-------S---EEEEESS---------------SSTTE--EES-TTS-
T ss_pred HHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-----cCceEEEeeccC--------------CCCCE--EEecCccC
Confidence 44566663 45566799999999999875442 234455555411 11132 22222233
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHHHHHHHHhcCCcEEEeeec
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+ + .+++.|++++...+. + ..+..++.+..|+||| ||.|.|..- ..++ ..+.+.+.+++.||+.......
T Consensus 117 P-L-~~~svDv~VfcLSLM--G-Tn~~~fi~EA~RvLK~-~G~L~IAEV---~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 117 P-L-EDESVDVAVFCLSLM--G-TNWPDFIREANRVLKP-GGILKIAEV---KSRFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp S----TT-EEEEEEES-----S-S-HHHHHHHHHHHEEE-EEEEEEEEE---GGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred c-C-CCCceeEEEEEhhhh--C-CCcHHHHHHHHheecc-CcEEEEEEe---cccCcCHHHHHHHHHHCCCeEEecccC
Confidence 3 2 478999999987763 2 2345599999999999 999999842 2222 3788889999999999886643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-06 Score=83.09 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC-CCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG-SGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~-~~~~fD 256 (343)
.++.+|||+|||+|.++..++. .+...++.+|+++ .+.+.++++.+ .++...++.++.++..++. .+. ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~--~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 4578999999999999887654 2233455555555 44444455444 3332235667766554432 111 245899
Q ss_pred EEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH
Q 019282 257 LIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343)
Q Consensus 257 lIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343)
+|++.--...-.. .....++....++|+| ||.++.+.... +.+.+++.+.+.
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~scs~---~~~~~~f~~~v~ 354 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFSCSG---LMTSDLFQKIIA 354 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEeCCC---cCCHHHHHHHHH
Confidence 9998754421111 1123456678899999 99998753211 223455555543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-05 Score=75.63 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-CCCCCcEEEe-cccCCcC-CC-CCCCcee
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-LLHKRPIIVR-GEDMDFT-KF-GSGVVYD 256 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~~~~~~~~~~-~~~~dl~-~~-~~~~~fD 256 (343)
++.+|||||||+|.+...++...+...++++|+|+.....+ +++.+.+ ....++.+.. .+..++. .. ...+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A--~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA--QAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH--HHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 46799999999999888887766656677777777666555 4444433 1233444432 1111221 11 1356899
Q ss_pred EEEEccccccCCchHH---HHHHHH----------------HHhccCCCCcEEEEEe-----ccccc-----------cC
Q 019282 257 LIYASAVFLHMPDKLV---WVGLER----------------LASKLRPYDGRIFVSH-----NIKFC-----------SR 301 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~---~~~L~~----------------l~r~LkP~GG~lvi~~-----~~~~~-----------~~ 301 (343)
+|+|+--|+.-..... ..-.+. ..+++.+ ||.+-+.. ...+. ..
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~-GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk 270 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE-GGEVAFIKRMIEESKAFAKQVLWFTSLVSKK 270 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC-CcEeeeehHhhHHHHHHHhhCcEEEEEeecc
Confidence 9999988854433311 111222 2344557 78764431 11111 11
Q ss_pred CCHHHHHHHHHhcCCcEEE
Q 019282 302 LGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~ 320 (343)
-....+.+.|++.|...+.
T Consensus 271 ~~l~~l~~~L~~~~~~~~~ 289 (321)
T PRK11727 271 ENLPPLYRALKKVGAVEVK 289 (321)
T ss_pred CCHHHHHHHHHHcCCceEE
Confidence 1288899999999995443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=78.51 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=86.2
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
..++|||||-|.+..++...- -.+++.+ |.+.-|....+.....++ ......+ ++++.++ .++++|+|+++.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~-vekli~~--DtS~~M~~s~~~~qdp~i---~~~~~v~-DEE~Ldf-~ens~DLiisSl 145 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG-VEKLIMM--DTSYDMIKSCRDAQDPSI---ETSYFVG-DEEFLDF-KENSVDLIISSL 145 (325)
T ss_pred cceeecccchhhhhHHHHhcc-hhheeee--ecchHHHHHhhccCCCce---EEEEEec-chhcccc-cccchhhhhhhh
Confidence 579999999999999987632 2234444 455555554432111111 2222333 3444445 478999999999
Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEEEe-----------------------ccccccCCC-HHHHHHHHHhcCCcE
Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-----------------------NIKFCSRLG-GEECTKRLTSLGLEY 318 (343)
Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-----------------------~~~~~~~~~-~~~l~~~L~~aGf~~ 318 (343)
.+||+.+-.. .+.+|+..||| +|.++-+. -.+++..+. ..++-.+|.++||..
T Consensus 146 slHW~NdLPg--~m~~ck~~lKP-Dg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325)
T KOG2940|consen 146 SLHWTNDLPG--SMIQCKLALKP-DGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325)
T ss_pred hhhhhccCch--HHHHHHHhcCC-CccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence 9999887544 78999999999 99987541 012233333 678889999999997
Q ss_pred EEeee
Q 019282 319 IGKKT 323 (343)
Q Consensus 319 v~~~~ 323 (343)
+...+
T Consensus 223 ~tvDt 227 (325)
T KOG2940|consen 223 LTVDT 227 (325)
T ss_pred ceecc
Confidence 76654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-06 Score=77.52 Aligned_cols=109 Identities=21% Similarity=0.214 Sum_probs=78.7
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCceeEEEEc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVVYDLIYAS 261 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~fDlIvs~ 261 (343)
..+||||||.|.+...+|+..|...+.++++-.+.+..+..+ ..+.++. ++.+++.++..+.++. ++++.|.|+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k-~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKK-IKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHH-HHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 589999999999999999999988888888887776666443 2333442 5666666666655443 45599999986
Q ss_pred cccccCCch------HHHHHHHHHHhccCCCCcEEEEEec
Q 019282 262 AVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 262 ~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+-=-|-... -...+++.+.++|+| ||.|.+...
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~-gG~l~~aTD 165 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKP-GGVLHFATD 165 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccC-CCEEEEEec
Confidence 544332211 124689999999999 999988743
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=79.57 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC----
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG---- 250 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~---- 250 (343)
...+..+|||||+++|.-++.++..++. ..++.++.++ ...+.+++..+ .|+. .++.++.+++.+.. .+.
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVA-HKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCC-CceEEEeccHHHHHHHHHhccc
Confidence 3444569999999999999999987754 3455555554 44555555443 5554 47788877555432 111
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..++||+|+.-.- ......+++.+.++|+| ||.+++-
T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~-GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKV-GGVIGYD 189 (247)
T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCC-CeEEEEc
Confidence 1368999998643 23334589999999999 9997763
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-05 Score=72.04 Aligned_cols=139 Identities=16% Similarity=0.108 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
+-..++.+.+...+ .++.+|||+|||||.++..+++. +...++++|++..++....+ +... ......++... ..
T Consensus 59 ~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~--~~ 134 (228)
T TIGR00478 59 GGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYV--TP 134 (228)
T ss_pred hHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccC--CH
Confidence 33444555555554 46779999999999999999985 33445555555544433222 1111 00000011100 11
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc------cCCC-----------HHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC------SRLG-----------GEE 306 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~------~~~~-----------~~~ 306 (343)
.++. . .-..||+++++... .+..+.+.|+| |.+++.....|. ..-+ .++
T Consensus 135 ~~~~-~-d~~~~DvsfiS~~~----------~l~~i~~~l~~--~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~ 200 (228)
T TIGR00478 135 ADIF-P-DFATFDVSFISLIS----------ILPELDLLLNP--NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHK 200 (228)
T ss_pred hHcC-C-CceeeeEEEeehHh----------HHHHHHHHhCc--CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHH
Confidence 1111 0 11368877776544 57889999998 555544222221 1111 455
Q ss_pred HHHHHHhcCCcEEEee
Q 019282 307 CTKRLTSLGLEYIGKK 322 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~ 322 (343)
+...+.+.||+++...
T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 201 VIDKGESPDFQEKKII 216 (228)
T ss_pred HHHHHHcCCCeEeeEE
Confidence 6667778899877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-06 Score=77.79 Aligned_cols=155 Identities=17% Similarity=0.026 Sum_probs=94.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....++..+.....--...+|||+|||+|..+..+.+.++ .-..++.+|.+..+...++.+..................
T Consensus 17 ~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 95 (274)
T PF09243_consen 17 AVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYR 95 (274)
T ss_pred HHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhc
Confidence 3445666666555444456999999999988777777666 344555666666777666655433221111100000001
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+.. .-...|+|++.+++..+++.....+++.+.+.+.+ .|+|..+......-...+.++.|.+.|+.++.=-.|
T Consensus 96 ~~~---~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APCph 169 (274)
T PF09243_consen 96 DFL---PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPCPH 169 (274)
T ss_pred ccc---cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCCcc
Confidence 111 12234999999999999987777788888887763 665553211111111667788888899998876666
Q ss_pred cc
Q 019282 325 DS 326 (343)
Q Consensus 325 ~~ 326 (343)
+.
T Consensus 170 ~~ 171 (274)
T PF09243_consen 170 DG 171 (274)
T ss_pred CC
Confidence 43
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-06 Score=77.82 Aligned_cols=128 Identities=15% Similarity=0.230 Sum_probs=79.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCC---CcEEEecccCC--cCC-CCC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHK---RPIIVRGEDMD--FTK-FGS 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~---~~~~~~~~~~d--l~~-~~~ 251 (343)
-.+++..+||+|||-|+-++..-++ .-..+.++||.......+..+-+.-.+...+ ...++.++... +.+ ++.
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HhccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 4567888999999999988776552 3345677777665555553322110111111 23555553221 111 112
Q ss_pred -CCceeEEEEccccccC--CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 252 -GVVYDLIYASAVFLHM--PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 252 -~~~fDlIvs~~v~~hl--~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
+.+||+|-|-+++|+. .....+..|.++.++|+| ||+++-+.+ ..+.+...|+..
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp-GG~FIgTiP-------dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP-GGVFIGTIP-------DSDVIIKRLRAG 250 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC-CcEEEEecC-------cHHHHHHHHHhc
Confidence 3339999999999865 445556689999999999 999988753 245666666655
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.2e-06 Score=72.85 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||+|||+|.+++.++... ...++.+++++..... ++++.+ .+. .++.++.++..++... ..++||+|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~--a~~Nl~~~~~--~~v~~~~~D~~~~l~~-~~~~fDlV 125 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQ--LIKNLATLKA--GNARVVNTNALSFLAQ-PGTPHNVV 125 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHH--HHHHHHHhCC--CcEEEEEchHHHHHhh-cCCCceEE
Confidence 457799999999999998654432 2455555555544443 343322 232 2455665543332211 23579999
Q ss_pred EEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 259 YASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
++.--+.. + .....++.+.. +|+| +|.+++.+.
T Consensus 126 ~~DPPy~~-g--~~~~~l~~l~~~~~l~~-~~iv~ve~~ 160 (199)
T PRK10909 126 FVDPPFRK-G--LLEETINLLEDNGWLAD-EALIYVESE 160 (199)
T ss_pred EECCCCCC-C--hHHHHHHHHHHCCCcCC-CcEEEEEec
Confidence 99877532 2 12235565555 4899 999999875
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.9e-07 Score=87.68 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred chHHHHHHHHHhcCC--CCC--CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH---HHHHHHhcccCCCCCCCcE
Q 019282 165 GGRDVFEFLAEASHI--TPN--SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL---MAAFRYELPSQGLLHKRPI 237 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l--~~~--~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~---~~a~a~~~~~~~~~~~~~~ 237 (343)
+...-++.|.+.+.+ ..+ ..+||||||+|.++.++++ .+++.+.+.+... +..++ .+.|++. .+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r~V~t~s~a~~d~~~~qvqfa---leRGvpa-~~~ 168 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----RNVTTMSFAPNDEHEAQVQFA---LERGVPA-MIG 168 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----CCceEEEcccccCCchhhhhh---hhcCcch-hhh
Confidence 344555666665555 333 3589999999999999988 6666665544322 22222 2234432 111
Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
.+ ....++ | +++.||+|.|...+... +.... +|-++-|+|+| ||+++++..
T Consensus 169 ~~--~s~rLP-f-p~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRp-GGyfv~S~p 220 (506)
T PF03141_consen 169 VL--GSQRLP-F-PSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRP-GGYFVLSGP 220 (506)
T ss_pred hh--cccccc-C-Cccchhhhhcccccccchhcccc--eeehhhhhhcc-CceEEecCC
Confidence 11 112344 3 47899999998777544 33334 89999999999 999999854
|
; GO: 0008168 methyltransferase activity |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=75.04 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=60.7
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+.+.+.+..++.++.+|||||||+|.++..+++.. ..++++++|...... +++.... ..++.++.++..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~--l~~~~~~---~~~v~ii~~D~~ 85 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEF--LRDDEIA---AGNVEIIEGDAL 85 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHH--HHHHhcc---CCCEEEEEeccc
Confidence 345677788888888889999999999999999999862 456666666654444 3432221 235666666443
Q ss_pred CcCCCCCCCceeEEEEccccc
Q 019282 245 DFTKFGSGVVYDLIYASAVFL 265 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~ 265 (343)
++. . ..||.|+++..++
T Consensus 86 ~~~---~-~~~d~Vv~NlPy~ 102 (258)
T PRK14896 86 KVD---L-PEFNKVVSNLPYQ 102 (258)
T ss_pred cCC---c-hhceEEEEcCCcc
Confidence 332 2 2589999987763
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-06 Score=73.68 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=77.6
Q ss_pred HHHHHHHhcC--CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC---------CCCCCcE
Q 019282 169 VFEFLAEASH--ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG---------LLHKRPI 237 (343)
Q Consensus 169 ~~~~l~~~~~--l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~---------~~~~~~~ 237 (343)
+...+.+.+. +.||.+.||+|.|+|.++..++......+...+||+.-+....+.+++...- +....+.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3444444444 8899999999999999999999877766655577777777666665543321 2223455
Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++.++..- .+....+||.|.+-.... ...+++.+.|+| ||++++-.
T Consensus 148 ivvGDgr~--g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~-gGrllip~ 193 (237)
T KOG1661|consen 148 IVVGDGRK--GYAEQAPYDAIHVGAAAS--------ELPQELLDQLKP-GGRLLIPV 193 (237)
T ss_pred EEeCCccc--cCCccCCcceEEEccCcc--------ccHHHHHHhhcc-CCeEEEee
Confidence 66553221 123567999998874432 256778899999 99998864
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-06 Score=76.63 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+.+.+.+.+.+.++.+|||||||+|.++..+++..+ .++++|+|+. +.+.+++... ..++.++.++..+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~--~~~~~~~~~~----~~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRD--LAPILAETFA----EDNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHH--HHHHHHHhhc----cCceEEEEChhhc
Confidence 445667777777888899999999999999999998642 5666666654 4444443221 1356667664443
Q ss_pred cCCCCCCCc-eeEEEEcccc
Q 019282 246 FTKFGSGVV-YDLIYASAVF 264 (343)
Q Consensus 246 l~~~~~~~~-fDlIvs~~v~ 264 (343)
+. .+.. +|.|+++--+
T Consensus 99 ~~---~~~~~~~~vv~NlPY 115 (272)
T PRK00274 99 VD---LSELQPLKVVANLPY 115 (272)
T ss_pred CC---HHHcCcceEEEeCCc
Confidence 32 2221 5888887554
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=74.11 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=82.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCH----HHHHHHHHcC-----CCceEEEEcChhHHHHHHHHhcc-c---CCC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLR----VGVHFIRYLN-----PENFHCLERDELSLMAAFRYELP-S---QGL 231 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~----~a~~la~~~~-----~~~~~vvdid~s~~~~a~a~~~~-~---~~~ 231 (343)
..+.+...+.....- ...+|+-.||+||- ++..+.+.++ .-.+.++|||...+..|.+-.-. . .++
T Consensus 81 l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~ 159 (268)
T COG1352 81 LRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGL 159 (268)
T ss_pred HHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccC
Confidence 344555545432222 46799999999996 4444555554 24567788888777666331111 0 111
Q ss_pred CCC--CcEEEe-----------------cccCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE
Q 019282 232 LHK--RPIIVR-----------------GEDMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343)
Q Consensus 232 ~~~--~~~~~~-----------------~~~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343)
+.. ...+.. ....++..-. ..+.||+|+|.+|+-++..+....++++++..|+| ||+|+
T Consensus 160 ~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~-gG~Lf 238 (268)
T COG1352 160 PPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP-GGLLF 238 (268)
T ss_pred CHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC-CCEEE
Confidence 110 000111 0112333222 45679999999999999999888999999999999 99999
Q ss_pred EEecccc
Q 019282 292 VSHNIKF 298 (343)
Q Consensus 292 i~~~~~~ 298 (343)
+-+.+..
T Consensus 239 lG~sE~~ 245 (268)
T COG1352 239 LGHSETI 245 (268)
T ss_pred EccCccc
Confidence 9875443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=82.28 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
.+..+||||||.|.++..+|...|...+.++++.......+..+. ...++. ++.++..+...+....+++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~-~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLA-GEQNIT--NFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHcCCC--eEEEEcCCHHHHHHhcCcccccEEEE
Confidence 456899999999999999999999888888888876665554432 233442 34444443222333335678999988
Q ss_pred ccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEE
Q 019282 261 SAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIG 320 (343)
Q Consensus 261 ~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~ 320 (343)
++-=.|-... -...+++.+.++||| ||.+.+......+ -+...+.+.+.+ |+.+.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~-gG~i~~~TD~~~y----~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKD-NGNLVFASDIENY----FYEAIELIQQNGNFEIIN 485 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCC-CCEEEEEcCCHHH----HHHHHHHHHhCCCeEecc
Confidence 6543332111 124689999999999 9999887432222 233455556655 87653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=76.35 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=87.9
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
..+.+++.+.+.+... +.+|||++||+|.++..+++.. ..+++++++. .+.+.++++.. .+. . ++.++.++.
T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~--~ai~~a~~N~~~~~~-~-~v~~~~~d~ 263 (362)
T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF--RRVLATEISK--PSVAAAQYNIAANGI-D-NVQIIRMSA 263 (362)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCH--HHHHHHHHHHHHhCC-C-cEEEEECCH
Confidence 3455666666554432 3579999999999999888854 3455555555 44444454433 233 2 566776655
Q ss_pred CCcCC-CCC-------------CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHH
Q 019282 244 MDFTK-FGS-------------GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTK 309 (343)
Q Consensus 244 ~dl~~-~~~-------------~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~ 309 (343)
.++.. +.. ...||+|+..--- -+-. ..+++.+.+ | ++.+|++.+..-. ..++..
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~--~~~l~~l~~---~-~~ivyvSC~p~tl----arDl~~ 331 (362)
T PRK05031 264 EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLD--DETLKLVQA---Y-ERILYISCNPETL----CENLET 331 (362)
T ss_pred HHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCc--HHHHHHHHc---c-CCEEEEEeCHHHH----HHHHHH
Confidence 44311 100 1258999885432 1111 125555544 8 8999998642111 344443
Q ss_pred HHHhcCCcEEEeeecccccc-chhHH
Q 019282 310 RLTSLGLEYIGKKTHDSLLF-NHYEI 334 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~~l~~-~~~e~ 334 (343)
|.+ ||++...+..|++|. .|.|.
T Consensus 332 -L~~-gY~l~~v~~~DmFPqT~HvE~ 355 (362)
T PRK05031 332 -LSQ-THKVERFALFDQFPYTHHMEC 355 (362)
T ss_pred -HcC-CcEEEEEEEcccCCCCCcEEE
Confidence 333 999999999999996 45553
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=75.21 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+.+.+.+...+.++.+|||||||+|.++..+++.. ..++++++|....... ++... .+. ..++.++.++..
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l--~~~~~~~~~-~~~v~ii~~Dal 95 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAEL--KKRFQNSPL-ASKLEVIEGDAL 95 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHH--HHHHHhcCC-CCcEEEEECCHh
Confidence 45677888888888899999999999999999998853 3466666666554443 43222 221 235667766443
Q ss_pred CcCCCCCCCceeEEEEccccccCCchH
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKL 271 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~ 271 (343)
. .+ ...||.|+++.-+ ++..+.
T Consensus 96 ~---~~-~~~~d~VvaNlPY-~Istpi 117 (294)
T PTZ00338 96 K---TE-FPYFDVCVANVPY-QISSPL 117 (294)
T ss_pred h---hc-ccccCEEEecCCc-ccCcHH
Confidence 3 22 2368999887555 555543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=80.25 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCCC----CCCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCc
Q 019282 166 GRDVFEFLAEASHIT----PNSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYEL-PSQGLLHKRP 236 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~----~~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~ 236 (343)
.+.+.+.+.+...-. ++..|||||||+|-+....+++. ....+++++-++...... +++ ...+. .+++
T Consensus 167 e~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l--~~~v~~n~w-~~~V 243 (448)
T PF05185_consen 167 ERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL--QKRVNANGW-GDKV 243 (448)
T ss_dssp HHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH--HHHHHHTTT-TTTE
T ss_pred HHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH--HHHHHhcCC-CCeE
Confidence 344555555554433 35789999999999988777643 123455555444333322 222 23344 3478
Q ss_pred EEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
.++.+ +..++....+.|+||+=.+=.....+...+.|....|.||| ||.++=
T Consensus 244 ~vi~~---d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp-~Gi~IP 295 (448)
T PF05185_consen 244 TVIHG---DMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP-DGIMIP 295 (448)
T ss_dssp EEEES----TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE-EEEEES
T ss_pred EEEeC---cccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC-CCEEeC
Confidence 88887 44444455699999984332222233444578889999999 988763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=64.32 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..++.... ..+.-.+..|+|+|||||.+++..+- ++...+.++|+|+.....+.++ ... ....+.++.+ |.
T Consensus 32 a~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N--~~~--l~g~v~f~~~---dv 102 (198)
T COG2263 32 AYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARAN--AEE--LLGDVEFVVA---DV 102 (198)
T ss_pred HHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHH--HHh--hCCceEEEEc---ch
Confidence 33444333 23444577899999999999987764 5666778888888777766443 332 2235666655 44
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
.++ .+.+|.++.+--|.-.....-..++.+..+.-+ +++-.|... ..+-+.+..+.+|+.+...
T Consensus 103 ~~~--~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~----vVYsiH~a~-----~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 103 SDF--RGKFDTVIMNPPFGSQRRHADRPFLLKALEISD----VVYSIHKAG-----SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred hhc--CCccceEEECCCCccccccCCHHHHHHHHHhhh----eEEEeeccc-----cHHHHHHHHHhcCCeEEEE
Confidence 433 368899998866643322111225555555433 222223211 3667778889999887654
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.7e-05 Score=70.57 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
-+.+++.|.. .+....|-|+|||.+.++..- ...++..|+-. .+.++..+ |
T Consensus 168 ld~ii~~ik~---r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a----------------~~~~V~~c-----D 218 (325)
T KOG3045|consen 168 LDVIIRKIKR---RPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVA----------------VNERVIAC-----D 218 (325)
T ss_pred HHHHHHHHHh---CcCceEEEecccchhhhhhcc-----ccceeeeeeec----------------CCCceeec-----c
Confidence 4556666653 245678999999999886511 12344444321 12233333 3
Q ss_pred cCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEeee
Q 019282 246 FTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 246 l~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~~~ 323 (343)
+.+.+ .+++.|++++...+ ++. .+..++.+++|+|+| ||.++|..- ..++. ...+...|...||.......
T Consensus 219 m~~vPl~d~svDvaV~CLSL--Mgt-n~~df~kEa~RiLk~-gG~l~IAEv---~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 219 MRNVPLEDESVDVAVFCLSL--MGT-NLADFIKEANRILKP-GGLLYIAEV---KSRFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred ccCCcCccCcccEEEeeHhh--hcc-cHHHHHHHHHHHhcc-CceEEEEeh---hhhcccHHHHHHHHHHcCCeeeehhh
Confidence 33332 47899999987665 222 344599999999999 999999841 11222 45588889999998776553
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-05 Score=71.52 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=59.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....+.+.+.+...+.++.+|||||||+|.++..+++..+ .++++++|...... +++.... ..++.++.++..
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~--l~~~~~~---~~~v~v~~~D~~ 85 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEI--LRKLLSL---YERLEVIEGDAL 85 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHH--HHHHhCc---CCcEEEEECchh
Confidence 4456777788777888889999999999999999998653 36666666654443 3332211 234556655433
Q ss_pred CcCCCCCCCcee---EEEEccccccCCch
Q 019282 245 DFTKFGSGVVYD---LIYASAVFLHMPDK 270 (343)
Q Consensus 245 dl~~~~~~~~fD---lIvs~~v~~hl~~~ 270 (343)
.++ .. .|| .|+++..+ |+..+
T Consensus 86 ~~~---~~-~~d~~~~vvsNlPy-~i~~~ 109 (253)
T TIGR00755 86 KVD---LP-DFPKQLKVVSNLPY-NISSP 109 (253)
T ss_pred cCC---hh-HcCCcceEEEcCCh-hhHHH
Confidence 332 22 456 77776554 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.2e-05 Score=71.49 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+..+ .+||-||.|.|.++..++++.+...++.++||+.-...+.. .+.. .+..+.++.++.++...+-.- ...+|
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~-~l~~~~~~~~dpRv~i~i~Dg~~~v~~-~~~~f 150 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARK-YLPEPSGGADDPRVEIIIDDGVEFLRD-CEEKF 150 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHH-hccCcccccCCCceEEEeccHHHHHHh-CCCcC
Confidence 3344 59999999999999999998888889999999976665532 2222 122245666665544444322 23489
Q ss_pred eEEEEccccccCCc---hHHHHHHHHHHhccCCCCcEEEEEecccccc
Q 019282 256 DLIYASAVFLHMPD---KLVWVGLERLASKLRPYDGRIFVSHNIKFCS 300 (343)
Q Consensus 256 DlIvs~~v~~hl~~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~ 300 (343)
|+|+....=. .+. --...+++.++++|+| +|.++......+..
T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q~~~~~~~ 196 (282)
T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKE-DGIFVAQAGSPFLQ 196 (282)
T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCC-CcEEEEecCCcccc
Confidence 9999865443 222 0123489999999999 99998875444443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.6e-05 Score=75.43 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...+||.||+|.|..+..++++.+...++++++|+.....+ ++... ..+.+.++.++.++...+..- ..++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la--r~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC--RKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH--HHhcccccccccCCceEEEEChhHHHHhh-CCCCccE
Confidence 34689999999999999988866566788888888666655 33321 123345677776655554422 3568999
Q ss_pred EEEcccccc--CCc--hHHHHHHH-HHHhccCCCCcEEEEEe
Q 019282 258 IYASAVFLH--MPD--KLVWVGLE-RLASKLRPYDGRIFVSH 294 (343)
Q Consensus 258 Ivs~~v~~h--l~~--~~~~~~L~-~l~r~LkP~GG~lvi~~ 294 (343)
|++-..-.. -+. -....+++ .+++.|+| ||.+++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p-~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNP-GGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCC-CcEEEEec
Confidence 998632110 011 11234787 89999999 99987753
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-05 Score=68.02 Aligned_cols=136 Identities=23% Similarity=0.245 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhcCCCC----CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec
Q 019282 166 GRDVFEFLAEASHITP----NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG 241 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~----~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~ 241 (343)
.+.+++++.+.....+ ..++|||||=+......-. .-+.++-||..+ + ...+...
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns------~--------~~~I~qq-- 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-----GWFDVTRIDLNS------Q--------HPGILQQ-- 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-----CceeeEEeecCC------C--------CCCceee--
Confidence 4557777776543322 2699999997654433211 123355555522 0 1112222
Q ss_pred ccCCcCCC----CCCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcE-----EEEEeccccc--cC-CCHHHHH
Q 019282 242 EDMDFTKF----GSGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGR-----IFVSHNIKFC--SR-LGGEECT 308 (343)
Q Consensus 242 ~~~dl~~~----~~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~-----lvi~~~~~~~--~~-~~~~~l~ 308 (343)
||.+. ...+.||+|+++.++.++|++ .+...+.++++.|+| +|. |++.-+..-. .+ .+.+.+.
T Consensus 91 ---DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~-~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~ 166 (219)
T PF11968_consen 91 ---DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP-PGLSLFPSLFLVLPLPCVTNSRYMTEERLR 166 (219)
T ss_pred ---ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC-CCccCcceEEEEeCchHhhcccccCHHHHH
Confidence 33222 146789999999999999865 556789999999999 999 8776432211 12 2378999
Q ss_pred HHHHhcCCcEEEeeeccc
Q 019282 309 KRLTSLGLEYIGKKTHDS 326 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~ 326 (343)
+.|+..||..+..+...-
T Consensus 167 ~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 167 EIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHhCCcEEEEEEecCe
Confidence 999999999988765443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=68.09 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC--CCCC-------------------CCcEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ--GLLH-------------------KRPIIV 239 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~--~~~~-------------------~~~~~~ 239 (343)
.+.+||-=|||.||++..++. .++.+.+.+.|..|.-..+-..+. .... -+...+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 357899999999999999998 577788888887775533221110 0000 000000
Q ss_pred e---------------cccCCcCCCC-C---CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE------e
Q 019282 240 R---------------GEDMDFTKFG-S---GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS------H 294 (343)
Q Consensus 240 ~---------------~~~~dl~~~~-~---~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~------~ 294 (343)
. -.+.||.+.. . .+.||+|+..+.+.- ......+|+.++++||| ||.. |. +
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp-gG~W-IN~GPLlyh 207 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP-GGYW-INFGPLLYH 207 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc-CCEE-EecCCcccc
Confidence 0 0112333222 2 268999998855532 33455699999999999 9954 43 1
Q ss_pred cccc------ccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 295 NIKF------CSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 295 ~~~~------~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
..+. -..++.+++...+++.||+.+..+.
T Consensus 208 ~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1121 1345589999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=74.52 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=72.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
-...+|+|.|.|+.+..+...++. +.+++.|......+ +.... .| +..+.+ .-|.+.+ .-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~-a~~~~-~g-----V~~v~g--dmfq~~P---~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAA-APYLA-PG-----VEHVAG--DMFQDTP---KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhh-hhhhc-CC-----cceecc--cccccCC---CcCeEEEE
Confidence 368999999999999999987754 66888887665444 22221 12 222222 1233322 34699999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+++||++|++...+|++|++.|+| ||.+++..
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~-~GkIiv~E 275 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPP-GGKIIVVE 275 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCC-CCEEEEEe
Confidence 999999999999999999999999 99998864
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=69.30 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC----
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF---- 249 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~---- 249 (343)
.++++..|+|+|||.|+=+..|++.+.. ..+..+||+...+..+.++ +.....+.-.+.-+.+ ++.+.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~-L~~~~~p~l~v~~l~g---dy~~~l~~l 148 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE-LPLGNFSHVRCAGLLG---TYDDGLAWL 148 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh-hhhccCCCeEEEEEEe---cHHHHHhhc
Confidence 3567779999999999999988887743 3477777777777666443 2212232212222333 33211
Q ss_pred C---CCCceeEEEEc-cccccCCchHHHHHHHHHHh-ccCCCCcEEEEE
Q 019282 250 G---SGVVYDLIYAS-AVFLHMPDKLVWVGLERLAS-KLRPYDGRIFVS 293 (343)
Q Consensus 250 ~---~~~~fDlIvs~-~v~~hl~~~~~~~~L~~l~r-~LkP~GG~lvi~ 293 (343)
. ......+|+.- .++..+.+.+...+|+++++ .|+| ||.|+|.
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~-~d~lLiG 196 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP-SDSFLIG 196 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC-CCEEEEe
Confidence 1 12335666664 58999999888899999999 9999 9999886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.4e-05 Score=72.47 Aligned_cols=148 Identities=12% Similarity=0.096 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+++.+.+.+...+ .+|||++||+|.+++.+++.. ..+++++++. .+.+.++++...+... ++.++.++..+
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~--~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAK--PSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCH--HHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 3456666665554333 479999999999999998864 3445555554 5555445443322222 46667665444
Q ss_pred cCCCC---------C-----CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 246 FTKFG---------S-----GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 246 l~~~~---------~-----~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
+..-. . ...||+|+..-- .-+-. ..+++.+.+ | ++.+|++.+..-. ..++.. |
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~--~~~l~~l~~---~-~~ivYvsC~p~tl----aRDl~~-L 323 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLD--PDTCKLVQA---Y-ERILYISCNPETL----KANLEQ-L 323 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCc--HHHHHHHHc---C-CcEEEEEcCHHHH----HHHHHH-H
Confidence 32100 0 113798887432 11111 124555544 8 8999998642111 233443 3
Q ss_pred HhcCCcEEEeeeccccccc-hhH
Q 019282 312 TSLGLEYIGKKTHDSLLFN-HYE 333 (343)
Q Consensus 312 ~~aGf~~v~~~~~~~l~~~-~~e 333 (343)
. .||+.......|++|.. |.|
T Consensus 324 ~-~~Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 324 S-ETHRVERFALFDQFPYTHHME 345 (353)
T ss_pred h-cCcEEEEEEEcccCCCCCcEE
Confidence 3 45999999999999974 455
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=63.45 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+....+...+.-|||+|.|||-++..++.+. ++..++.++.+.. .....++. .++ +.++.+++.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d--F~~~L~~~----~p~--~~ii~gda~~l~ 107 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD--FVCHLNQL----YPG--VNIINGDAFDLR 107 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH--HHHHHHHh----CCC--ccccccchhhHH
Confidence 44455555677778899999999999999998754 4456667766653 33333321 222 235666656654
Q ss_pred CC---CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KF---GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~---~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ..+..||.|+|.--+..++......+|+.+...|.+ ||.++.-
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~-gg~lvqf 155 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA-GGPLVQF 155 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC-CCeEEEE
Confidence 11 146789999999888888888888899999999999 9998754
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.8e-05 Score=74.27 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=76.8
Q ss_pred hccCCCccchHHHHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCC
Q 019282 157 SNYGEPWAGGRDVFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHK 234 (343)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~ 234 (343)
.||+......+.+...+.+..... ++.+|||++||+|..++.++...+...++++|+++.....+ +++.+ .+. .
T Consensus 32 vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a--~~N~~~N~~-~- 107 (382)
T PRK04338 32 VFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELI--KKNLELNGL-E- 107 (382)
T ss_pred eeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHH--HHHHHHhCC-C-
Confidence 355444445566666655544322 34689999999999999998866544566777766655544 33332 222 2
Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...+..++...+... .+.||+|+..- + +.+.. ++....+.++| ||.++++
T Consensus 108 ~~~v~~~Da~~~l~~--~~~fD~V~lDP-~---Gs~~~--~l~~al~~~~~-~gilyvS 157 (382)
T PRK04338 108 NEKVFNKDANALLHE--ERKFDVVDIDP-F---GSPAP--FLDSAIRSVKR-GGLLCVT 157 (382)
T ss_pred ceEEEhhhHHHHHhh--cCCCCEEEECC-C---CCcHH--HHHHHHHHhcC-CCEEEEE
Confidence 233444433222211 35799999864 2 33222 78887888999 9999998
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=70.84 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCC-ceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGV-VYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~-~fDl 257 (343)
...+||=||.|.|..+..++++.+...++++++|+.-...+... ... .+..+.++.++.++...+..- ..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~-f~~~~~~~~d~r~~i~~~Dg~~~l~~-~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKY-FPEFSEGLDDPRVRIIIGDGRKFLKE-TQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH-THHHHTTGGSTTEEEEESTHHHHHHT-SSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHh-chhhccccCCCceEEEEhhhHHHHHh-ccCCcccE
Confidence 56799999999999999998866567899999998766655321 221 223455677776654444322 234 8999
Q ss_pred EEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc
Q 019282 258 IYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 258 Ivs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343)
|+.-..-...+.. ....+++.+++.|+| ||.+++.....+........+.+.+++....
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKP-DGVLVLQAGSPFLHPELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEE-EEEEEEEEEETTTTHHHHHHHHHHHHTTSSE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCC-CcEEEEEccCcccchHHHHHHHHHHHHhCCc
Confidence 9984433222221 134589999999999 9999886532222211134455566666663
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=65.51 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-----hc-ccCCCCCCCcEEEec
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-----EL-PSQGLLHKRPIIVRG 241 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-----~~-~~~~~~~~~~~~~~~ 241 (343)
..+..+.+..++.++...+|||||.|......+-..+.....++++.+.....+... +. ...+.....+.+..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344555667789999999999999999999888776666677777777655443221 11 112222223344433
Q ss_pred ccCCcCCCCC----CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 242 EDMDFTKFGS----GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 242 ~~~dl~~~~~----~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+.+.+. -..-|+|+++... +. +.....|.++...||| |-+ +|+
T Consensus 109 ---dfl~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~-G~~-IIs 156 (205)
T PF08123_consen 109 ---DFLDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKP-GAR-IIS 156 (205)
T ss_dssp ----TTTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-T-T-E-EEE
T ss_pred ---CccccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCC-CCE-EEE
Confidence 4442210 1346999998765 22 3344467888889998 544 555
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=65.18 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+..|...+.+.||.+|||-|+|+|.++..+++...+ .+++-.++.......++ +++...++.+ ++.+...+....-
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~-eeFr~hgi~~-~vt~~hrDVc~~G- 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKAL-EEFREHGIGD-NVTVTHRDVCGSG- 170 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHH-HHHHHhCCCc-ceEEEEeecccCC-
Confidence 466777789999999999999999999999998854 44566666554433332 2334455544 5555543222111
Q ss_pred CC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 249 FG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 249 ~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+. ....+|.|+. .+|.+.. .+-.+++.||. +|.-++++. +-+. -.+...+.|++.||..+..-
T Consensus 171 F~~ks~~aDaVFL-----DlPaPw~--AiPha~~~lk~-~g~r~csFS-PCIE--Qvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 171 FLIKSLKADAVFL-----DLPAPWE--AIPHAAKILKD-EGGRLCSFS-PCIE--QVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred ccccccccceEEE-----cCCChhh--hhhhhHHHhhh-cCceEEecc-HHHH--HHHHHHHHHHhCCCceEEEE
Confidence 22 2456777755 6777765 78888889999 775545432 0000 03456678888999776643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00037 Score=66.97 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEec-c
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRG-E 242 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~-~ 242 (343)
+--++...+.....+++|..|||==||||.++....- .++.++|.|....|..-++.+.+ -+.. ...+... +
T Consensus 181 ~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl----~G~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL----MGARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh----cCceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecc
Confidence 4456667777778899999999999999999886655 56667777777777766655443 2221 2223332 4
Q ss_pred cCCcCCCCCCCceeEEEEcccccc-----CC--chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH-----MP--DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h-----l~--~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
+.+++ ++ +..+|.|++-.-+.- .. +.-....|+.+.++||+ ||++++..+ ......+++.|
T Consensus 255 a~~lp-l~-~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~-gG~~vf~~p---------~~~~~~~~~~~ 322 (347)
T COG1041 255 ATNLP-LR-DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKP-GGRIVFAAP---------RDPRHELEELG 322 (347)
T ss_pred cccCC-CC-CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhc-CcEEEEecC---------CcchhhHhhcC
Confidence 44444 43 446999998533211 11 23345689999999999 999988753 22345788999
Q ss_pred CcEEEeee
Q 019282 316 LEYIGKKT 323 (343)
Q Consensus 316 f~~v~~~~ 323 (343)
|+++....
T Consensus 323 f~v~~~~~ 330 (347)
T COG1041 323 FKVLGRFT 330 (347)
T ss_pred ceEEEEEE
Confidence 99887543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=73.44 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=99.6
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....+++...+.+...++.++||+=||.|.+++.+++.. ..++++++++.. .+.++++++.+... ++.+..+++.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~a--V~~A~~NA~~n~i~-N~~f~~~~ae 351 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEA--VEAAQENAAANGID-NVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHH--HHHHHHHHHHcCCC-cEEEEeCCHH
Confidence 567788888888888888999999999999999999632 444555555544 44445544433333 4778877666
Q ss_pred CcCCCC-CCCceeEEEEccccccCCchHHH-HHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFTKFG-SGVVYDLIYASAVFLHMPDKLVW-VGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~-~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
++..-. ....+|.|+.. =|..-.. .+++.+.+ ++| ...+|++-+..-. ..+ ...|.+.|+++.+..
T Consensus 352 ~~~~~~~~~~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p-~~IvYVSCNP~Tl----aRD-l~~L~~~gy~i~~v~ 419 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVD-----PPRAGADREVLKQLAK-LKP-KRIVYVSCNPATL----ARD-LAILASTGYEIERVQ 419 (432)
T ss_pred HHhhhccccCCCCEEEEC-----CCCCCCCHHHHHHHHh-cCC-CcEEEEeCCHHHH----HHH-HHHHHhCCeEEEEEE
Confidence 665332 23578999873 2222222 24555544 556 6889888531111 222 346788999999999
Q ss_pred eccccccc-hhH
Q 019282 323 THDSLLFN-HYE 333 (343)
Q Consensus 323 ~~~~l~~~-~~e 333 (343)
..|++|+. |.|
T Consensus 420 ~~DmFP~T~HvE 431 (432)
T COG2265 420 PFDMFPHTHHVE 431 (432)
T ss_pred EeccCCCccccC
Confidence 99999986 454
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh-ccc--CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE-LPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~-~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+...+||=||.|.|..++.++++- ..++.++||+...... ++ +.. .++.+.++.++. .+.+. ..++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~--k~~lP~~~~~~~DpRv~l~~----~~~~~-~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSF--ISFFPHFHEVKNNKNFTHAK----QLLDL-DIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHH--HHHCHHHHHhhcCCCEEEee----hhhhc-cCCcCC
Confidence 345799999999999999999863 3788999998555444 43 222 344555655552 22211 236899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|+.-..+ + ..+++.++++|+| ||.++......+.....-..+.+.+++ .|..+.
T Consensus 142 VIIvDs~~----~---~~fy~~~~~~L~~-~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 142 LIICLQEP----D---IHKIDGLKRMLKE-DGVFISVAKHPLLEHVSMQNALKNMGD-FFSIAM 196 (262)
T ss_pred EEEEcCCC----C---hHHHHHHHHhcCC-CcEEEECCCCcccCHHHHHHHHHHHHh-hCCceE
Confidence 99987543 2 2378999999999 999988654444321113344455555 687443
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.9e-05 Score=68.86 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=51.2
Q ss_pred CceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEecc----------cc-ccCCCHHHHHHHHHhcCCcEE
Q 019282 253 VVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNI----------KF-CSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~----------~~-~~~~~~~~l~~~L~~aGf~~v 319 (343)
.+||+|++.+.++.... +.-...++++.++||| ||.|++..-. .| .-....+.+++.|+++||.++
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp-GG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKP-GGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE-EEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC-CcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 35999999999987633 3445689999999999 9999886211 11 222348999999999999988
Q ss_pred Eee
Q 019282 320 GKK 322 (343)
Q Consensus 320 ~~~ 322 (343)
..+
T Consensus 236 ~~~ 238 (256)
T PF01234_consen 236 DLE 238 (256)
T ss_dssp EEE
T ss_pred ecc
Confidence 877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=69.32 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-------CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEe
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-------NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVR 240 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-------~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~ 240 (343)
.+.+++.+.+...++.+|||-+||+|.+...+.+++ ....+++.++++.....+..+-.. .+..........
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~ 111 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEE
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccccc
Confidence 355666666677788899999999999998888754 556677888877666555432211 222221222343
Q ss_pred cccCCcCCCCCCCceeEEEEccccccC--C-----------------chHHHHHHHHHHhccCCCCcEEEEEeccccccC
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHM--P-----------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSR 301 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl--~-----------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~ 301 (343)
++...-........||+|+++--+--. . ......++..+.+.|++ ||++.+..+..+...
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-~G~~~~Ilp~~~L~~ 190 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP-GGRAAIILPNGFLFS 190 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE-EEEEEEEEEHHHHHG
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc-ccceeEEecchhhhc
Confidence 322222211124689999997444222 0 01122488999999999 999876654443322
Q ss_pred CC-HHHHHHHHHhcCC
Q 019282 302 LG-GEECTKRLTSLGL 316 (343)
Q Consensus 302 ~~-~~~l~~~L~~aGf 316 (343)
-+ ...+++.|.+.+.
T Consensus 191 ~~~~~~iR~~ll~~~~ 206 (311)
T PF02384_consen 191 SSSEKKIRKYLLENGY 206 (311)
T ss_dssp STHHHHHHHHHHHHEE
T ss_pred cchHHHHHHHHHhhch
Confidence 22 4677777765543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=59.93 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCH-HHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLR-VGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~-~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
+.++|.+.....++.+|||||||+|. ++..|++ .+..++++|.++.....+++. ....+.+ |+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~--------~~~~v~d---Dlf 68 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKL--------GLNAFVD---DLF 68 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHh--------CCeEEEC---cCC
Confidence 44556655555567899999999996 8877776 344555555554444433321 1223333 332
Q ss_pred C--CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCC
Q 019282 248 K--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRP 285 (343)
Q Consensus 248 ~--~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP 285 (343)
+ ...-+.+|+|++.. |.++.+..+.++.+.+.-
T Consensus 69 ~p~~~~y~~a~liysir-----pp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIR-----PPRDLQPFILELAKKINV 103 (134)
T ss_pred CCCHHHHhcCCEEEEeC-----CCHHHHHHHHHHHHHcCC
Confidence 2 22346799999964 344555566667666553
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=65.53 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CCCC-CceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FGSG-VVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~~~-~~fDl 257 (343)
++.+|||++||+|.+++.++.... ..++.++.+....... +++.+ .+. ..++.++.++..++.. .... ..||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~--~~N~~~~~~-~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTL--KENLALLKS-GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHH--HHHHHHhCC-cccEEEEehhHHHHHHHhhccCCCceE
Confidence 578999999999999999987532 3566666666555444 33322 222 2245566664433321 1112 24788
Q ss_pred EEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEec
Q 019282 258 IYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHN 295 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~ 295 (343)
|+..--+.. . .....++.+. .+|++ +|.+++.+.
T Consensus 125 v~~DPPy~~-~--~~~~~l~~l~~~~~l~~-~~iiv~E~~ 160 (189)
T TIGR00095 125 IYLDPPFFN-G--ALQALLELCENNWILED-TVLIVVEED 160 (189)
T ss_pred EEECcCCCC-C--cHHHHHHHHHHCCCCCC-CeEEEEEec
Confidence 877655532 1 1223455553 47899 998888764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=71.57 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+..++.+|||+++|+|.=+.+++..+.+. .++..|++....... +++ .+.|+. ++.....+...+... ..+.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L--~~nl~r~G~~--nv~v~~~D~~~~~~~-~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL--HANISRCGVS--NVALTHFDGRVFGAA-LPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH--HHHHHHcCCC--eEEEEeCchhhhhhh-chhhc
Confidence 66889999999999999999999987654 345555555444333 332 224442 344444433333222 24579
Q ss_pred eEEEE----c--cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEE
Q 019282 256 DLIYA----S--AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 256 DlIvs----~--~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|.|+. + +++..-++. ....+|....+.||| ||+|+.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 99994 3 334332221 124688999999999 9999765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00055 Score=59.87 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
..-+||||||+|..+-.++.... +.-+.++|+.+............ .+. ....+.. |+...-..++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~---~~~~V~t---dl~~~l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRV---HIDVVRT---DLLSGLRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCC---ccceeeh---hHHhhhccCCccEEEE
Confidence 56799999999999999988664 34455777777665543222111 111 2233332 3332223478888888
Q ss_pred ccccccCC-------------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 261 SAVFLHMP-------------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 261 ~~v~~hl~-------------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+--+.--+ ..-.+.++..+-..|.| .|++|+.. +....+.++.+.+++.||.+..
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp-~Gv~Ylv~----~~~N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP-RGVFYLVA----LRANKPKEILKILEKKGYGVRI 190 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc-CceEEeee----hhhcCHHHHHHHHhhcccceeE
Confidence 74332111 11134567777788999 99999863 2334588888999999998654
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00035 Score=61.85 Aligned_cols=139 Identities=22% Similarity=0.216 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 169 VFEFLAEASHITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
+++-+.-...++... +++|||+|.|.=++.++-..|...++.+|-. ....++-+.... -++. ++..+.++.++
T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~--~KK~~FL~~~~~~L~L~--nv~v~~~R~E~- 109 (184)
T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV--GKKVAFLKEVVRELGLS--NVEVINGRAEE- 109 (184)
T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS--HHHHHHHHHHHHHHT-S--SEEEEES-HHH-
T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC--chHHHHHHHHHHHhCCC--CEEEEEeeecc-
Confidence 455554444455444 8999999999999999988887776666644 344443333222 3442 46667665554
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
......||+|++..+- +.. .+++-+...+++ ||.++.-.+...... .++....+...|.+......
T Consensus 110 --~~~~~~fd~v~aRAv~----~l~--~l~~~~~~~l~~-~G~~l~~KG~~~~~E--l~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 110 --PEYRESFDVVTARAVA----PLD--KLLELARPLLKP-GGRLLAYKGPDAEEE--LEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp --TTTTT-EEEEEEESSS----SHH--HHHHHHGGGEEE-EEEEEEEESS--HHH--HHTHHHHHHCCCEEEEEEEE
T ss_pred --cccCCCccEEEeehhc----CHH--HHHHHHHHhcCC-CCEEEEEcCCChHHH--HHHHHhHHHHhCCEEeeecc
Confidence 2245799999998655 222 378889999999 999988754222110 33445556667776665443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=68.74 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH----HhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR----YELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a----~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+.-.+||-+|.|.|..+..+.++..-.+++.+|+|+.+...+.. +........+.++..+..++..+..- ..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc
Confidence 33468999999999999999986556788999999866655431 11122234456777776655555422 35689
Q ss_pred eEEEEccccc---cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 256 DLIYASAVFL---HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 256 DlIvs~~v~~---hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
|.|+...-=. -+..-....+..-+.+.|++ +|.+++..+..|.....--.+..-++++||.+.-.+.|
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~ 437 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVH 437 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEe
Confidence 9998732110 01111223477788999999 99999986555543322223456688999988776655
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00065 Score=59.86 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc---------eEEEEcChhHHHHHHHHhcccCCCCCC
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN---------FHCLERDELSLMAAFRYELPSQGLLHK 234 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~---------~~vvdid~s~~~~a~a~~~~~~~~~~~ 234 (343)
++...+...++.....+++..|||-=||+|.+.+..+....... +.+.|++......+..+. ...+.. .
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~-~~ag~~-~ 88 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL-KAAGVE-D 88 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH-HHTT-C-G
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH-HhcccC-C
Confidence 34556777777778888999999999999999988776554444 678888887766554332 224442 2
Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccC-Cc-----hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHH
Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHM-PD-----KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECT 308 (343)
Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl-~~-----~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~ 308 (343)
.+.+.+.+..+++ . .++.+|.|+++.-+..- +. .-...+++++.+++++ ..+++++.. ..+.
T Consensus 89 ~i~~~~~D~~~l~-~-~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~---------~~~~ 156 (179)
T PF01170_consen 89 YIDFIQWDARELP-L-PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN---------RELE 156 (179)
T ss_dssp GEEEEE--GGGGG-G-TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC---------CCHH
T ss_pred ceEEEecchhhcc-c-ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC---------HHHH
Confidence 4556655444444 1 46799999998666432 21 1123567889999998 555555432 2356
Q ss_pred HHHHhcCCcEEEe
Q 019282 309 KRLTSLGLEYIGK 321 (343)
Q Consensus 309 ~~L~~aGf~~v~~ 321 (343)
+.+...+++....
T Consensus 157 ~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 157 KALGLKGWRKRKL 169 (179)
T ss_dssp HHHTSTTSEEEEE
T ss_pred HHhcchhhceEEE
Confidence 6677777765543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6e-05 Score=73.49 Aligned_cols=107 Identities=23% Similarity=0.222 Sum_probs=76.7
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-CCCCc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-GSGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~~~~~ 254 (343)
..+.++..++|+|||-|.....++.. . ...++|++.+..+....+.... .++.+... ++.+ ++... .+++.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f-~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~-~~~~---~~~~~~fedn~ 178 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF-K--KAGVVGLDNNAYEAFRANELAKKAYLDNKCN-FVVA---DFGKMPFEDNT 178 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh-c--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcc-eehh---hhhcCCCCccc
Confidence 45677889999999999999988774 2 2346677776666665544322 33333222 2322 33322 25789
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
||.+.+..+..|.++... ++++++++++| ||+++..
T Consensus 179 fd~v~~ld~~~~~~~~~~--~y~Ei~rv~kp-GG~~i~~ 214 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEK--VYAEIYRVLKP-GGLFIVK 214 (364)
T ss_pred cCcEEEEeecccCCcHHH--HHHHHhcccCC-CceEEeH
Confidence 999999999999999887 99999999999 9998764
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0004 Score=61.35 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=84.7
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH----------HHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL----------MAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~----------~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
..+++++..|.|+=-|.|.++..|..+....+ +|...-+... +.+.+++ .... ++..+.. .
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e----~~~a-N~e~~~~---~ 113 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAARE----PVYA-NVEVIGK---P 113 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhh----hhhh-hhhhhCC---c
Confidence 46899999999999999999999999887666 4444433322 1111111 1111 1111111 1
Q ss_pred cCCCCCCCceeEEEEccccccC-----CchHHHHHHHHHHhccCCCCcEEEEEeccccc----------cCCCHHHHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHM-----PDKLVWVGLERLASKLRPYDGRIFVSHNIKFC----------SRLGGEECTKR 310 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl-----~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~----------~~~~~~~l~~~ 310 (343)
+..+...+..|+++.....|.+ .......+...+++.||| ||++++.++.... ....+......
T Consensus 114 ~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP-GGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~ 192 (238)
T COG4798 114 LVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP-GGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAE 192 (238)
T ss_pred ccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCC-CcEEEEEeccccCCCChhhhhhhcccChHHHHHH
Confidence 1112233455555554333322 233444588999999999 9999887543321 12237788888
Q ss_pred HHhcCCcEEEeeeccccc
Q 019282 311 LTSLGLEYIGKKTHDSLL 328 (343)
Q Consensus 311 L~~aGf~~v~~~~~~~l~ 328 (343)
.+++||+..........+
T Consensus 193 veaaGFkl~aeS~ilaNp 210 (238)
T COG4798 193 VEAAGFKLEAESEILANP 210 (238)
T ss_pred HHhhcceeeeeehhhcCC
Confidence 999999987665543333
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00028 Score=69.40 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=88.5
Q ss_pred CccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEe
Q 019282 162 PWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVR 240 (343)
Q Consensus 162 ~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~ 240 (343)
+|--+|.....+.+. .. |++||++=|=||.++.+.+.. +....+.+|++. .....++++.+ .++......++.
T Consensus 201 fFlDqR~~R~~l~~~--~~-GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGEL--AA-GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhh--cc-CCeEEEecccCcHHHHHHHhc-CCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeeh
Confidence 343345555555432 33 899999999999999988872 223444555544 44444455544 455455667887
Q ss_pred cccCCcCCCC--CCCceeEEEEcc-ccc------cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHH
Q 019282 241 GEDMDFTKFG--SGVVYDLIYASA-VFL------HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKR 310 (343)
Q Consensus 241 ~~~~dl~~~~--~~~~fDlIvs~~-v~~------hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~ 310 (343)
+++..+.... .+.+||+|+.-- .|- .-.......++..+.++|+| ||.++.+.........- .+.+.+.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p-gG~l~~~s~~~~~~~~~f~~~i~~a 353 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP-GGTLVTSSCSRHFSSDLFLEIIARA 353 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCC-CCEEEEEecCCccCHHHHHHHHHHH
Confidence 7665553221 245899999742 111 11112334578889999999 99998875322111000 3344445
Q ss_pred HHhcCCcEEEe
Q 019282 311 LTSLGLEYIGK 321 (343)
Q Consensus 311 L~~aGf~~v~~ 321 (343)
+...|......
T Consensus 354 ~~~~~~~~~~~ 364 (393)
T COG1092 354 AAAAGRRAQEI 364 (393)
T ss_pred HHhcCCcEEEe
Confidence 55566555444
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00098 Score=53.50 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=56.6
Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCC-cEEEecccCC-cCCCCCCCceeEEEEcc
Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKR-PIIVRGEDMD-FTKFGSGVVYDLIYASA 262 (343)
Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~-~~~~~~~~~d-l~~~~~~~~fDlIvs~~ 262 (343)
+||+|||+|... .+..... ....++++|.+..+....+..... .... +.+..++... ...+.....||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG--AGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh--cCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999976 3333222 223455566666555543321111 1111 2334332222 12121114899994444
Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
..++.. ....+.++.+.++| +|.+++..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~-~g~~~~~~ 155 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKP-GGRLVLSD 155 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCC-CcEEEEEe
Confidence 444444 33489999999999 99998874
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0028 Score=57.41 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=86.7
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHH--HHHhcccCCCCCCCcEEEecccCCcCCCC-CC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAA--FRYELPSQGLLHKRPIIVRGEDMDFTKFG-SG 252 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a--~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~ 252 (343)
.++++|.+||-+|..+|....++.+-.+ ...+++++.++.....- .++++ . ++.-+-+++-.-..+. .-
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------~-NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------P-NIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------T-TEEEEES-TTSGGGGTTTS
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------C-ceeeeeccCCChHHhhccc
Confidence 5678999999999999999999999876 44567888887654332 22221 1 3443433332222232 23
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CH----HHHHHHHHhcCCcEEEeeecccc
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GG----EECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~----~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
+..|+|++.-. .+.+..-++.++...||+ ||.+++.......... .+ .+-.+.|++.||+.++.....++
T Consensus 142 ~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~-gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 142 EMVDVIFQDVA----QPDQARIAALNARHFLKP-GGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY 216 (229)
T ss_dssp --EEEEEEE-S----STTHHHHHHHHHHHHEEE-EEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT
T ss_pred ccccEEEecCC----ChHHHHHHHHHHHhhccC-CcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC
Confidence 58999988421 223344478888899999 9999987432222111 11 12245678889999998887777
Q ss_pred ccchh
Q 019282 328 LFNHY 332 (343)
Q Consensus 328 ~~~~~ 332 (343)
-..|.
T Consensus 217 ~~dH~ 221 (229)
T PF01269_consen 217 ERDHA 221 (229)
T ss_dssp STTEE
T ss_pred CCCcE
Confidence 76664
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00064 Score=63.17 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+++.+.+..++.++..|||||+|.|.++..|++.. ..++++++|......- ++... ...+..++.+|+..
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L--~~~~~---~~~n~~vi~~DaLk 87 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVL--KERFA---PYDNLTVINGDALK 87 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHH--HHhcc---cccceEEEeCchhc
Confidence 45678888888899999999999999999999999854 3467777777543332 33221 23367777764444
Q ss_pred cCCCCCCC--ceeEEEEccccccCCch
Q 019282 246 FTKFGSGV--VYDLIYASAVFLHMPDK 270 (343)
Q Consensus 246 l~~~~~~~--~fDlIvs~~v~~hl~~~ 270 (343)
+. ... .++.|+++--+ ++..+
T Consensus 88 ~d---~~~l~~~~~vVaNlPY-~Issp 110 (259)
T COG0030 88 FD---FPSLAQPYKVVANLPY-NISSP 110 (259)
T ss_pred Cc---chhhcCCCEEEEcCCC-cccHH
Confidence 33 333 67888887555 55554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=60.98 Aligned_cols=140 Identities=23% Similarity=0.226 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCC-CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEASHITP-NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~-~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
.+++-+.-...... +.+++|||+|.|.=+..++-..+..+++.+| ......++-+.... -++ +++.++.+++++
T Consensus 53 HilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLle--s~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~ 128 (215)
T COG0357 53 HILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLE--SLGKKIAFLREVKKELGL--ENVEIVHGRAEE 128 (215)
T ss_pred HHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEc--cCchHHHHHHHHHHHhCC--CCeEEehhhHhh
Confidence 35555544334444 6899999999999999998777777655554 44444554444332 233 357777776676
Q ss_pred cCCCCCCCc-eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 246 FTKFGSGVV-YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 246 l~~~~~~~~-fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+..- .. ||+|++..+. + ....++-+...+|+ ||.++.-....... -..+........|+.+.....
T Consensus 129 ~~~~---~~~~D~vtsRAva----~--L~~l~e~~~pllk~-~g~~~~~k~~~~~~--e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 129 FGQE---KKQYDVVTSRAVA----S--LNVLLELCLPLLKV-GGGFLAYKGLAGKD--ELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cccc---cccCcEEEeehcc----c--hHHHHHHHHHhccc-CCcchhhhHHhhhh--hHHHHHHHHHhhcCcEEEEEE
Confidence 6532 23 9999998665 1 22267778999999 99875432111110 034556667778888776554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=63.85 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=89.2
Q ss_pred ccchHHHHHHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCC--CCcEEE
Q 019282 163 WAGGRDVFEFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLH--KRPIIV 239 (343)
Q Consensus 163 ~~~~~~~~~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~--~~~~~~ 239 (343)
|+..+.+...+.+....-.+.+|||+|.| ||..++.++.+.+...+.++|=........ ++....+... .....+
T Consensus 11 wpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv--~ki~~~n~~s~~tsc~vl 88 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNV--EKIRNSNMASSLTSCCVL 88 (201)
T ss_pred cccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHH--HHHHhcccccccceehhh
Confidence 33334444445544455557899999999 666777777777777777877554433222 2111111111 011000
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
.-....-........||.|++...+. + ++......+.++..|+| .|..++..+ .+..+.+.+.+...+.||.+.
T Consensus 89 rw~~~~aqsq~eq~tFDiIlaADClF-f-dE~h~sLvdtIk~lL~p-~g~Al~fsP---RRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 89 RWLIWGAQSQQEQHTFDIILAADCLF-F-DEHHESLVDTIKSLLRP-SGRALLFSP---RRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred HHHHhhhHHHHhhCcccEEEeccchh-H-HHHHHHHHHHHHHHhCc-ccceeEecC---cccchHHHHHHHHHhceeEEE
Confidence 00000000011345899999988762 2 33344589999999999 888665532 111226777888889999987
Q ss_pred Eeeeccc
Q 019282 320 GKKTHDS 326 (343)
Q Consensus 320 ~~~~~~~ 326 (343)
-...++.
T Consensus 163 l~enyde 169 (201)
T KOG3201|consen 163 LEENYDE 169 (201)
T ss_pred ecccHhH
Confidence 7665544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00062 Score=61.68 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=81.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343)
++.+...++.....+-..+++||||.=||.-++.+|..+|..+ ++.++++....... .+..+ +|. ...+.++.+.
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~--~~~~k~agv-~~KI~~i~g~ 133 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG--LELVKLAGV-DHKITFIEGP 133 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh--HHHHHhccc-cceeeeeecc
Confidence 3455555555555666778999999999999999999887643 45666666555544 33333 343 4467777775
Q ss_pred cCCc-----CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 243 DMDF-----TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 243 ~~dl-----~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.+. .+. ..++||.++.- |..+... ++++++.+++++ ||++++-
T Consensus 134 a~esLd~l~~~~-~~~tfDfaFvD----adK~nY~-~y~e~~l~Llr~-GGvi~~D 182 (237)
T KOG1663|consen 134 ALESLDELLADG-ESGTFDFAFVD----ADKDNYS-NYYERLLRLLRV-GGVIVVD 182 (237)
T ss_pred hhhhHHHHHhcC-CCCceeEEEEc----cchHHHH-HHHHHHHhhccc-ccEEEEe
Confidence 4442 222 35789999874 4444333 699999999999 9999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=61.35 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
+.++.++|||||++|.++..+++ .+..|+++|..++..... .+.++....++...+. +..+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~l~~~L~--------~~~~V~h~~~d~fr~~--p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGPMAQSLM--------DTGQVEHLRADGFKFR--PPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechhcCHhhh--------CCCCEEEEeccCcccC--CCCCCCCEE
Confidence 46889999999999999999998 455788888655433322 2235666655443333 125689999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCC--cEEEEEeccccccCCC-----HHHHHHHHHhcCCc
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYD--GRIFVSHNIKFCSRLG-----GEECTKRLTSLGLE 317 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~G--G~lvi~~~~~~~~~~~-----~~~l~~~L~~aGf~ 317 (343)
+|-.+- .+.. +.+-+.+.|.. | ...+++-..+...+|. .+.+.+.|.++|..
T Consensus 275 VcDmve----~P~r--va~lm~~Wl~~-g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 275 VCDMVE----KPAR--VAELMAQWLVN-GWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN 333 (357)
T ss_pred EEeccc----CHHH--HHHHHHHHHhc-CcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 996442 3333 67888888886 3 1234443222222332 44567778788874
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00042 Score=65.77 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
++.+.+.+.+.++..+||.+||.|..+..+++.++ ...++++|.| +.+.+.+++.... ..++.++.++-.++..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~---~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKP---FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhcc---CCcEEEEeCCHHHHHH
Confidence 34455556677888999999999999999999875 3444455555 4555555543322 2366777663333322
Q ss_pred CCCC--CceeEEEEc
Q 019282 249 FGSG--VVYDLIYAS 261 (343)
Q Consensus 249 ~~~~--~~fDlIvs~ 261 (343)
.... .++|.|++.
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 2112 279999875
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=65.17 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCC--------CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC--CcCCC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNP--------ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM--DFTKF 249 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~--------~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~--dl~~~ 249 (343)
...+|||.|||+|.+...+++.+.. ..++++|+|+.....+ +.+.. .+.. ......++.. .+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a--~~~l~~~~~~--~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA--KKLLGEFALL--EINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH--HHHHhhcCCC--Cceeeeccccccccccc
Confidence 4569999999999999999886632 3345666666554443 32211 1100 1111111101 01000
Q ss_pred -CCCCceeEEEEccccccCCc--h------------------------------------------HHHHHH-HHHHhcc
Q 019282 250 -GSGVVYDLIYASAVFLHMPD--K------------------------------------------LVWVGL-ERLASKL 283 (343)
Q Consensus 250 -~~~~~fDlIvs~~v~~hl~~--~------------------------------------------~~~~~L-~~l~r~L 283 (343)
...+.||+|+++--+.-... . ....++ +.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 11357999999854432210 0 000133 5688999
Q ss_pred CCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 284 RPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 284 kP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
+| ||++.+..+..+...-....+++.+.+.
T Consensus 187 ~~-~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 187 NK-NGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred CC-CCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 99 9999877655555544566777766443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0051 Score=60.09 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=91.2
Q ss_pred CCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEE
Q 019282 161 EPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIV 239 (343)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~ 239 (343)
+.+..+..-.......++..+|.+|||...+.|.=+.+++....+.+..++.+|.+.......+.+ .+.|.. ++..+
T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~ 213 (355)
T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--NVIVV 213 (355)
T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEE
Confidence 333444444444445578999999999999999999999998876444444444444333322322 234443 23444
Q ss_pred ecccCCcCCCCC-CCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 240 RGEDMDFTKFGS-GVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 240 ~~~~~dl~~~~~-~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
..++..+.+... .++||.|+.- ++++--|+. ...++|....+.||| ||.|+.+.= ..
T Consensus 214 ~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTC-S~ 291 (355)
T COG0144 214 NKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTC-SL 291 (355)
T ss_pred ecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEcc-CC
Confidence 443333433322 2359999963 344221221 134689999999999 999987630 00
Q ss_pred ccCCCHHHHHHHHHhc-CCcEEEe
Q 019282 299 CSRLGGEECTKRLTSL-GLEYIGK 321 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~a-Gf~~v~~ 321 (343)
...-+++.+...|++. +|+.+..
T Consensus 292 ~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 292 TPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred chhcCHHHHHHHHHhCCCceeecc
Confidence 0011256666777765 6665543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00051 Score=64.06 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
...+..+||+|||.|..+. . ...+..++-|.+.....-+++ .+ ......++...++ + .+.+||.+
T Consensus 43 ~~~gsv~~d~gCGngky~~---~---~p~~~~ig~D~c~~l~~~ak~------~~-~~~~~~ad~l~~p-~-~~~s~d~~ 107 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG---V---NPLCLIIGCDLCTGLLGGAKR------SG-GDNVCRADALKLP-F-REESFDAA 107 (293)
T ss_pred cCCcceeeecccCCcccCc---C---CCcceeeecchhhhhcccccc------CC-CceeehhhhhcCC-C-CCCccccc
Confidence 4458899999999986632 1 123446666666555543322 11 1123333334444 2 36799999
Q ss_pred EEccccccCCch-HHHHHHHHHHhccCCCCcEEEEE
Q 019282 259 YASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 259 vs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+++.++||+... ....+++++.++++| ||...+.
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrp-gg~~lvy 142 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRP-GGNALVY 142 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcC-CCceEEE
Confidence 999999999553 445689999999999 9986654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=62.51 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
+|....++... ..+.+|||+=|=||.++.+.+.. +.. .++.+|.|....+.++++.. .++......++..+..
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~g-GA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAG-GAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHT-TES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHC-CCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 45555555543 35789999999999999987762 222 35556666666666565544 4444446667766544
Q ss_pred CcCC-CCCCCceeEEEEcc-ccc----cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 245 DFTK-FGSGVVYDLIYASA-VFL----HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 245 dl~~-~~~~~~fDlIvs~~-v~~----hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
++.. ....++||+|++-- .|- .+ ......++..+.++|+| ||.++.+.... +.+.+.+.+.+.+++
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~-~~~y~~L~~~a~~ll~~-gG~l~~~scs~---~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDL-ERDYKKLLRRAMKLLKP-GGLLLTCSCSH---HISPDFLLEAVAEAA 256 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEH-HHHHHHHHHHHHHTEEE-EEEEEEEE--T---TS-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHHhcCC-CCEEEEEcCCc---ccCHHHHHHHHHHhC
Confidence 4321 11246899999841 110 11 12334578899999999 99998764322 233566777666655
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=59.50 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=60.2
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.++..|||.-||.|.+++.+++......+++.|+.+...... ++..+.+-....+..+.++..++. ..+.||.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L--~~Ni~lNkv~~~i~~~~~D~~~~~---~~~~~dr 172 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL--KENIRLNKVENRIEVINGDAREFL---PEGKFDR 172 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH--HHHHHHTT-TTTEEEEES-GGG------TT-EEE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH--HHHHHHcCCCCeEEEEcCCHHHhc---CccccCE
Confidence 36789999999999999999999865555566666666544433 333332223346667776555554 3679999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l 290 (343)
|++...-. . ..+|..+.+++++ ||.+
T Consensus 173 vim~lp~~--~----~~fl~~~~~~~~~-~g~i 198 (200)
T PF02475_consen 173 VIMNLPES--S----LEFLDAALSLLKE-GGII 198 (200)
T ss_dssp EEE--TSS--G----GGGHHHHHHHEEE-EEEE
T ss_pred EEECChHH--H----HHHHHHHHHHhcC-CcEE
Confidence 99864221 1 1278889999999 8876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=60.66 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-CCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-HKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~~~~~~~~~~~~d 245 (343)
-.+++.|.+..+++++..|||||.|||.++..+++. +.+|+.++..+.|.+.-.++. +|.+ .....++.+ |
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~----~kkVvA~E~Dprmvael~krv-~gtp~~~kLqV~~g---D 115 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA----GKKVVAVEIDPRMVAELEKRV-QGTPKSGKLQVLHG---D 115 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh----cCeEEEEecCcHHHHHHHHHh-cCCCccceeeEEec---c
Confidence 457788888899999999999999999999999983 334554444445555443322 2332 124455555 4
Q ss_pred cCCCCCCCceeEEEEcccc
Q 019282 246 FTKFGSGVVYDLIYASAVF 264 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~ 264 (343)
+...+ .-.||.++++.-+
T Consensus 116 ~lK~d-~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 116 FLKTD-LPRFDGCVSNLPY 133 (315)
T ss_pred cccCC-CcccceeeccCCc
Confidence 43222 2479999986554
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00089 Score=58.65 Aligned_cols=139 Identities=14% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHHhcC-CCC--CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 170 FEFLAEASH-ITP--NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 170 ~~~l~~~~~-l~~--~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+..+.+..+ +.+ +.+|||+||++|.++..+.+.. .....++++|..+.... +. . ..+.. .+... .....+
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~-~~~~~v~avDl~~~~~~--~~-~-~~i~~-d~~~~-~~~~~i 81 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG-GPAGRVVAVDLGPMDPL--QN-V-SFIQG-DITNP-ENIKDI 81 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST-TTEEEEEEEESSSTGS---TT-E-EBTTG-GGEEE-EHSHHG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc-cccceEEEEeccccccc--cc-e-eeeec-ccchh-hHHHhh
Confidence 334444455 554 4899999999999999998854 12355666665443110 00 0 01111 11111 011122
Q ss_pred CCCCC--CCceeEEEEccccccCCch---------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 247 TKFGS--GVVYDLIYASAVFLHMPDK---------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 247 ~~~~~--~~~fDlIvs~~v~~hl~~~---------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
.+... .+.||+|++-..+....+. .....+.-+.+.|+| ||.+++-... ..... ++...+.. .
T Consensus 82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~-gG~~v~K~~~---~~~~~-~~~~~l~~-~ 155 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP-GGTFVIKVFK---GPEIE-ELIYLLKR-C 155 (181)
T ss_dssp GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT-TEEEEEEESS---STTSH-HHHHHHHH-H
T ss_pred hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC-CCEEEEEecc---CccHH-HHHHHHHh-C
Confidence 22211 2689999997744332221 122345556678999 9998876422 11112 45444443 5
Q ss_pred CcEEEe
Q 019282 316 LEYIGK 321 (343)
Q Consensus 316 f~~v~~ 321 (343)
|+.+..
T Consensus 156 F~~v~~ 161 (181)
T PF01728_consen 156 FSKVKI 161 (181)
T ss_dssp HHHEEE
T ss_pred CeEEEE
Confidence 554443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00018 Score=64.06 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=63.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
+.++||+|.|.|..+..++..+. .++.++++. -|....++ .+. ++.-. .+.. ..+-+||+|.|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~--tMr~rL~k---k~y---nVl~~----~ew~--~t~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSW--TMRDRLKK---KNY---NVLTE----IEWL--QTDVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhH--HHHHHHhh---cCC---ceeee----hhhh--hcCceeehHHHH
Confidence 46899999999999999887653 344554443 34432222 122 22111 1111 134579999999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++.-.-++-. .|+.++.+|.|.+|+++++
T Consensus 177 NlLDRc~~p~k--LL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 177 NLLDRCFDPFK--LLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHhhcChHH--HHHHHHHHhccCCCcEEEE
Confidence 99877766655 8999999999988988775
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.007 Score=55.27 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
+-..+....+...+ .++..+||||.-||+++..+.+. +...++++|+....+....+ .+.++..... .
T Consensus 63 G~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR--------~d~rV~~~E~--t 131 (245)
T COG1189 63 GGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR--------NDPRVIVLER--T 131 (245)
T ss_pred HHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh--------cCCcEEEEec--C
Confidence 33344444444454 45788999999999999999883 23455666665544333332 1224444432 3
Q ss_pred CcCCCC---CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------ccCCC-----------H
Q 019282 245 DFTKFG---SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------CSRLG-----------G 304 (343)
Q Consensus 245 dl~~~~---~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------~~~~~-----------~ 304 (343)
++..+. ..+..|+|++--.|.. ...+|..+..+++| +|.++.-....| ...-| .
T Consensus 132 N~r~l~~~~~~~~~d~~v~DvSFIS-----L~~iLp~l~~l~~~-~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~ 205 (245)
T COG1189 132 NVRYLTPEDFTEKPDLIVIDVSFIS-----LKLILPALLLLLKD-GGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVL 205 (245)
T ss_pred ChhhCCHHHcccCCCeEEEEeehhh-----HHHHHHHHHHhcCC-CceEEEEecchhhhhhhhcCcCceecCcchHHHHH
Confidence 333221 2346789998666632 23379999999999 888876532222 11111 6
Q ss_pred HHHHHHHHhcCCcEEEeee
Q 019282 305 EECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~~~ 323 (343)
..+.+++.+.||++.....
T Consensus 206 ~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 206 SKIENFAKELGFQVKGLIK 224 (245)
T ss_pred HHHHHHHhhcCcEEeeeEc
Confidence 7788888999999887664
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0025 Score=57.32 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+.+.+.+.+. .+|.|||+||-|-|...-.+.++-+ ...+++.- .+...+..+.... ....+++...+..+|..+
T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~--hp~V~krmr~~gw--~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEA--HPDVLKRMRDWGW--REKENVIILEGRWEDVLN 163 (271)
T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCC-cceEEEec--CHHHHHHHHhccc--ccccceEEEecchHhhhc
Confidence 3343443333 5688999999999988877666433 44445443 3333433333221 122367777776666544
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
--+++.||.|+--..-++.. +.+.+.+.+.++||| +|++-..
T Consensus 164 ~L~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP-~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKP-EGVFSYF 205 (271)
T ss_pred cccccCcceeEeechhhHHH--HHHHHHHHHhhhcCC-CceEEEe
Confidence 33678899998654334433 345689999999999 9998554
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0057 Score=55.12 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=80.2
Q ss_pred EEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccc
Q 019282 185 VLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVF 264 (343)
Q Consensus 185 VLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~ 264 (343)
|.||||-.|.+...|++.-....++.+|+.+.++..+..+ ....++. .++....++. +..+.+.+..|.|+..+|=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~-i~~~~l~-~~i~~rlgdG--L~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKEN-IAKYGLE-DRIEVRLGDG--LEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTT-T-TTEEEEE-SG--GGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHHcCCc-ccEEEEECCc--ccccCCCCCCCEEEEecCC
Confidence 6899999999999999966556678889999888877543 2334443 3666666633 3333333347888876543
Q ss_pred ccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 265 LHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 265 ~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
.......|++....++. .-.|++.- ......++++|.+.||..+....
T Consensus 77 ----G~lI~~ILe~~~~~~~~-~~~lILqP------~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 77 ----GELIIEILEAGPEKLSS-AKRLILQP------NTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ----HHHHHHHHHHTGGGGTT---EEEEEE------SS-HHHHHHHHHHTTEEEEEEEE
T ss_pred ----HHHHHHHHHhhHHHhcc-CCeEEEeC------CCChHHHHHHHHHCCCEEEEeEE
Confidence 34455678888888887 66777763 23478899999999999877553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0019 Score=62.93 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+++.+.+.++..++ +|||+=||.|.+++.+++.. ..+.++++..+ +...|+++...+... ++.++.+++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~--av~~A~~Na~~N~i~-n~~f~~~~~~ 254 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEE--AVEDARENAKLNGID-NVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HH--HHHHHHHHHHHTT---SEEEEE--SH
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHH--HHHHHHHHHHHcCCC-cceEEEeecc
Confidence 467788888888887766 89999999999999999844 34445555554 444445444432222 5667665444
Q ss_pred CcCC-------C------C-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 245 DFTK-------F------G-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 245 dl~~-------~------~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
++.. + . ....+|+|+..--=.-+. . .+++.+. ++ .=.+|++-+..-. ..++. .
T Consensus 255 ~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~--~~~~~~~---~~-~~ivYvSCnP~tl----aRDl~-~ 321 (352)
T PF05958_consen 255 DFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--E--KVIELIK---KL-KRIVYVSCNPATL----ARDLK-I 321 (352)
T ss_dssp HCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--H--HHHHHHH---HS-SEEEEEES-HHHH----HHHHH-H
T ss_pred chhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--H--HHHHHHh---cC-CeEEEEECCHHHH----HHHHH-H
Confidence 3321 0 0 122588887631000001 1 1344443 45 5566776421111 23343 3
Q ss_pred HHhcCCcEEEeeecccccc-chhHH
Q 019282 311 LTSLGLEYIGKKTHDSLLF-NHYEI 334 (343)
Q Consensus 311 L~~aGf~~v~~~~~~~l~~-~~~e~ 334 (343)
|. .||++......|++|. .|.|.
T Consensus 322 L~-~~y~~~~v~~~DmFP~T~HvE~ 345 (352)
T PF05958_consen 322 LK-EGYKLEKVQPVDMFPQTHHVET 345 (352)
T ss_dssp HH-CCEEEEEEEEE-SSTTSS--EE
T ss_pred Hh-hcCEEEEEEEeecCCCCCcEEE
Confidence 44 4999999999999997 45654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0059 Score=56.96 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=57.5
Q ss_pred CeEEEEcCC--cCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---------C-C
Q 019282 183 SHVLEIGCG--TLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---------K-F 249 (343)
Q Consensus 183 ~rVLDIGCG--tG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---------~-~ 249 (343)
...|||||| |-.....+++.. +.+.+..+|.|+ ...++++.+...+ ......++.++.-+-. . +
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~-~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADN-PRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCC-CCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 479999999 444555565544 556666777776 4455444433221 1112456655322210 0 1
Q ss_pred CCCCceeEEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 250 GSGVVYDLIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+.+ .-=.++.+.++||+++ ..-..++..+++.|.| |.+|+|+|.
T Consensus 147 D~~-rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap-GS~L~ish~ 191 (267)
T PF04672_consen 147 DFD-RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP-GSYLAISHA 191 (267)
T ss_dssp -TT-S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T-T-EEEEEEE
T ss_pred CCC-CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC-CceEEEEec
Confidence 112 2236778899999987 5556799999999999 999999974
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.01 Score=51.64 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=88.6
Q ss_pred EcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHH---hcccCCCCCCCcEEEe-cccCCcCCCC--CCCceeEEEE
Q 019282 188 IGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRY---ELPSQGLLHKRPIIVR-GEDMDFTKFG--SGVVYDLIYA 260 (343)
Q Consensus 188 IGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~---~~~~~~~~~~~~~~~~-~~~~dl~~~~--~~~~fDlIvs 260 (343)
||=|.-.++..|++.+. ...++++..|........-. .+. ..+....+.... -++..+.... ..+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl-~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENL-EELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHH-HHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 56677777888888776 66777887776543322111 000 011111122221 1334444332 3578999998
Q ss_pred ccccccCC-------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeecccc
Q 019282 261 SAVFLHMP-------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 261 ~~v~~hl~-------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
++ .|.+ ..-...+|+.+.++|++ +|.+.|+..... .|..-.+.++.+++||..++...+++-
T Consensus 82 NF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~~--py~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166)
T PF10354_consen 82 NF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDGQ--PYDSWNIEELAAEAGLVLVRKVPFDPS 156 (166)
T ss_pred eC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCC--CCccccHHHHHHhcCCEEEEEecCCHH
Confidence 74 4555 12345688999999999 999999853221 133445667788999999999999988
Q ss_pred ccchhHH
Q 019282 328 LFNHYEI 334 (343)
Q Consensus 328 ~~~~~e~ 334 (343)
.|+.|+.
T Consensus 157 ~ypgY~~ 163 (166)
T PF10354_consen 157 DYPGYEH 163 (166)
T ss_pred HCCCccc
Confidence 8888763
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.06 Score=48.15 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=89.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-CCC-CCCc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-KFG-SGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-~~~-~~~~ 254 (343)
.++++|.+||=+|.-+|....+..+-.+...++++..++.+...-..-...+. ++.-+.+++ ..+ .+. .-+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-----Ni~PIL~DA-~~P~~Y~~~Ve~ 145 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-----NIIPILEDA-RKPEKYRHLVEK 145 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-----Cceeeeccc-CCcHHhhhhccc
Confidence 45789999999999999999999998775558899988876544332111111 222232221 222 111 1245
Q ss_pred eeEEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHH----HHHHHHhcCCcEEEeeeccccc
Q 019282 255 YDLIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEE----CTKRLTSLGLEYIGKKTHDSLL 328 (343)
Q Consensus 255 fDlIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~----l~~~L~~aGf~~v~~~~~~~l~ 328 (343)
.|+|+. .+.. .+..-+..++..-||+ ||.+++......+... .+++ -.+.|++.||+.++.-...++-
T Consensus 146 VDviy~-----DVAQp~Qa~I~~~Na~~FLk~-~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye 219 (231)
T COG1889 146 VDVIYQ-----DVAQPNQAEILADNAEFFLKK-GGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYE 219 (231)
T ss_pred ccEEEE-----ecCCchHHHHHHHHHHHhccc-CCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcc
Confidence 788876 3433 3344467788999999 9988776322221111 1222 2346888999999888777776
Q ss_pred cchh
Q 019282 329 FNHY 332 (343)
Q Consensus 329 ~~~~ 332 (343)
..|+
T Consensus 220 ~DH~ 223 (231)
T COG1889 220 KDHA 223 (231)
T ss_pred cceE
Confidence 6664
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0036 Score=55.50 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=72.9
Q ss_pred ccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc
Q 019282 163 WAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343)
Q Consensus 163 ~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343)
|..+....+.+......-.+++|||+|.|+|..++..++. ....+..+|+++.. +.+.. -+.+++.. .+.+..
T Consensus 61 WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~-~~ai~-lNa~angv--~i~~~~-- 133 (218)
T COG3897 61 WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWL-EQAIR-LNAAANGV--SILFTH-- 133 (218)
T ss_pred HhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHH-HHHhh-cchhhccc--eeEEee--
Confidence 4667778888887777888999999999999999877763 33445667777533 33322 22222221 233332
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.|... .+..||+|+...++..-+.... ++. +++.++. .|..++.
T Consensus 134 -~d~~g--~~~~~Dl~LagDlfy~~~~a~~--l~~-~~~~l~~-~g~~vlv 177 (218)
T COG3897 134 -ADLIG--SPPAFDLLLAGDLFYNHTEADR--LIP-WKDRLAE-AGAAVLV 177 (218)
T ss_pred -ccccC--CCcceeEEEeeceecCchHHHH--HHH-HHHHHHh-CCCEEEE
Confidence 23332 4568999999988843333322 555 6666666 5665553
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.014 Score=52.46 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD- 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d- 245 (343)
.+.+...+..-++++.+|+|+|+-+|.++..+++..... .+.++|+.+.. +...+.+++++-.+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCc
Confidence 334433333345778999999999999999999877543 25666665521 11135555542111
Q ss_pred -----cCCCCCCCceeEEEEcccc--------ccCCchH-HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 246 -----FTKFGSGVVYDLIYASAVF--------LHMPDKL-VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 246 -----l~~~~~~~~fDlIvs~~v~--------~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
+.......++|+|++-... +|..... ....++-...+|+| ||.+++-. |... ..+++...+
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~-~G~fv~K~---fqg~-~~~~~l~~~ 172 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP-GGSFVAKV---FQGE-DFEDLLKAL 172 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC-CCeEEEEE---EeCC-CHHHHHHHH
Confidence 0111123457999986544 3332211 22356667789999 99998763 1111 133343333
Q ss_pred HhcCCcEEEeeec
Q 019282 312 TSLGLEYIGKKTH 324 (343)
Q Consensus 312 ~~aGf~~v~~~~~ 324 (343)
+..|+.+.....
T Consensus 173 -~~~F~~v~~~KP 184 (205)
T COG0293 173 -RRLFRKVKIFKP 184 (205)
T ss_pred -HHhhceeEEecC
Confidence 345666665543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0049 Score=59.16 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEeccc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGED 243 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~ 243 (343)
..+..+.....--...+|||+|.|.|..+..+-.-+|. .....++.++ ...+....+.+ ....+.+..-+.
T Consensus 100 asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp--~lrkV~~tl~~nv~t~~td~r~s~vt--- 174 (484)
T COG5459 100 ASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP--ALRKVGDTLAENVSTEKTDWRASDVT--- 174 (484)
T ss_pred HHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH--HHHHHHHHHHhhcccccCCCCCCccc---
Confidence 33444444333333457999999999877665554443 2334444433 22222111111 001111111111
Q ss_pred CCcCCCCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++-..++..+.|++|+...-+.+. .+..+..+++.+..++.| ||.|+|+.
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~-gg~lVivE 225 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAP-GGHLVIVE 225 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccC-CCeEEEEe
Confidence 233334456688888876655555 444566689999999999 99999984
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0012 Score=58.37 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.++..|... . -++.++||+=||+|.+++..+.. +...++.++.+......- +++.+ .+..+ ....+..+..
T Consensus 29 realFniL~~~-~-~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i--~~N~~~l~~~~-~~~v~~~d~~ 102 (183)
T PF03602_consen 29 REALFNILQPR-N-LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKII--KKNLEKLGLED-KIRVIKGDAF 102 (183)
T ss_dssp HHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHH--HHHHHHHT-GG-GEEEEESSHH
T ss_pred HHHHHHHhccc-c-cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHH--HHHHHHhCCCc-ceeeeccCHH
Confidence 34566666533 1 46889999999999999987753 224455666555444333 33322 23322 3444544322
Q ss_pred CcC-CC-CCCCceeEEEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEecc
Q 019282 245 DFT-KF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHNI 296 (343)
Q Consensus 245 dl~-~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~~ 296 (343)
.+. .. .....||+|++.--+..- .. ...+++.+. .+|++ +|.+++.+..
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~~-~~-~~~~l~~l~~~~~l~~-~~~ii~E~~~ 155 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAKG-LY-YEELLELLAENNLLNE-DGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTSC-HH-HHHHHHHHHHTTSEEE-EEEEEEEEET
T ss_pred HHHHhhcccCCCceEEEECCCcccc-hH-HHHHHHHHHHCCCCCC-CEEEEEEecC
Confidence 221 11 135789999997655322 21 234777776 89999 9999998753
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=61.84 Aligned_cols=126 Identities=10% Similarity=-0.000 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcC--------------------------------------
Q 019282 164 AGGRDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLN-------------------------------------- 204 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~-------------------------------------- 204 (343)
++.+.+...++...+. +++..++|-.||+|.+.+..+....
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4566677777766665 5678999999999999988765210
Q ss_pred ----CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CCc-hHHHHHHH
Q 019282 205 ----PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MPD-KLVWVGLE 277 (343)
Q Consensus 205 ----~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~~-~~~~~~L~ 277 (343)
...++++|+|+.....+ +++.. .|+. ..+.+..++..++......++||+|+++--+.. +++ .....+..
T Consensus 252 ~~~~~~~i~G~Did~~av~~A--~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAA--RKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred ccccCceEEEEECCHHHHHHH--HHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 11355666665555444 44433 4443 356666664444432212357999999865532 222 22222333
Q ss_pred H---HHhccCCCCcEEEEE
Q 019282 278 R---LASKLRPYDGRIFVS 293 (343)
Q Consensus 278 ~---l~r~LkP~GG~lvi~ 293 (343)
. ..+...| |+.+++.
T Consensus 329 ~lg~~lk~~~~-g~~~~ll 346 (702)
T PRK11783 329 QLGRRLKQQFG-GWNAALF 346 (702)
T ss_pred HHHHHHHHhCC-CCeEEEE
Confidence 3 3333448 8888664
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=54.02 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....+.+.+.+.+.+.++..|||||.|+|.++..|++.. ..++++++|.... ...++... ...++.++.++..
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~--~~L~~~~~---~~~~~~vi~~D~l 86 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLA--KHLKERFA---SNPNVEVINGDFL 86 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHH--HHHHHHCT---TCSSEEEEES-TT
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHH--HHHHHHhh---hcccceeeecchh
Confidence 456778888888888899999999999999999999876 6678888887443 32232221 2346777776444
Q ss_pred CcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHh
Q 019282 245 DFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLAS 281 (343)
Q Consensus 245 dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r 281 (343)
.+.... .......|+++.-+ ++... ++.++..
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy-~is~~----il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY-NISSP----ILRKLLE 119 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG-TGHHH----HHHHHHH
T ss_pred ccccHHhhcCCceEEEEEecc-cchHH----HHHHHhh
Confidence 333111 11355677776544 44443 4555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=49.59 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhccc-CC-CCCCCcEEEecccCCcCCCCCCCc
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPS-QG-LLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~-~~-~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
..+..+|+|+|||.|.++..++..+++ .+..++++|..+.....+.++.+ .+ ....+..+..+ +..+......
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 99 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG---DIADESSSDP 99 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc---chhhhcccCC
Confidence 356789999999999999999984421 23444444444333333333222 11 01112223222 2222212456
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHh
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLAS 281 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r 281 (343)
.++++.-++-..+.+. .++...+
T Consensus 100 ~~~~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 100 PDILVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred CeEEEEeecccchHHH----HHHHHHH
Confidence 7777776555444433 4455444
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.058 Score=48.80 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
+.+.++.||||-.+++..++.+..+...++..++.+.+...+..+ ..+.++.. ++....++. +..+..++.+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~-v~~~~l~~-~i~vr~~dg--l~~l~~~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRN-VKKNNLSE-RIDVRLGDG--LAVLELEDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHH-HHhcCCcc-eEEEeccCC--ccccCccCCcCEEE
Confidence 456679999999999999999987777888889999998888543 23333322 444443322 44444566899998
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+| +..-....|++-.+.|+. =-++++.- ...+..++++|.+.+|+.+..+
T Consensus 91 IAGM----GG~lI~~ILee~~~~l~~-~~rlILQP------n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 91 IAGM----GGTLIREILEEGKEKLKG-VERLILQP------NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred EeCC----cHHHHHHHHHHhhhhhcC-cceEEECC------CCCHHHHHHHHHhCCceeeeee
Confidence 7654 444455678888888874 23444431 2237889999999999977654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0059 Score=61.24 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=77.8
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
.+|+|...|.|+++..|.+ ..+.|..+-+...... ...+..+|+.. ....-.+.|..| +.+||+|.+..
T Consensus 367 RNVMDMnAg~GGFAAAL~~----~~VWVMNVVP~~~~nt-L~vIydRGLIG----~yhDWCE~fsTY--PRTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALID----DPVWVMNVVPVSGPNT-LPVIYDRGLIG----VYHDWCEAFSTY--PRTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhcc----CCceEEEecccCCCCc-chhhhhcccch----hccchhhccCCC--Ccchhheehhh
Confidence 4699999999999988876 4566766555311000 00111123321 111122445545 47999999999
Q ss_pred ccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 263 VFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 263 v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|.+..+ -....+|-++-|+|+| ||.++|.+..+. .++++..+....++..-
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP-~G~~iiRD~~~v-----l~~v~~i~~~lrW~~~~ 488 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRP-GGWVIIRDTVDV-----LEKVKKIAKSLRWEVRI 488 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCC-CceEEEeccHHH-----HHHHHHHHHhCcceEEE
Confidence 9977644 3455689999999999 999999864332 45677777777776543
|
; GO: 0008168 methyltransferase activity |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.00071 Score=53.84 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred EEEcCCcCHHHHHHHHHcCCCc---eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCCCCCceeEEEE
Q 019282 186 LEIGCGTLRVGVHFIRYLNPEN---FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFGSGVVYDLIYA 260 (343)
Q Consensus 186 LDIGCGtG~~a~~la~~~~~~~---~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~~~~~fDlIvs 260 (343)
||||+..|..+..+++.+...+ ++++|..+. ....++..+ .+.. .++.++.++..+.. .+ ..++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~-~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSL-PDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS---------------GGG--BTEEEEES-THHHHHHH-HH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc---ccccchhhhhcCCC-CeEEEEEcCcHHHHHHc-CCCCEEEEEE
Confidence 7999999999999998775543 555655552 111111111 2232 35777776443321 12 2478999987
Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
-.. |-. +.....++.+.+.|+| ||.+++-
T Consensus 76 Dg~--H~~-~~~~~dl~~~~~~l~~-ggviv~d 104 (106)
T PF13578_consen 76 DGD--HSY-EAVLRDLENALPRLAP-GGVIVFD 104 (106)
T ss_dssp ES-----H-HHHHHHHHHHGGGEEE-EEEEEEE
T ss_pred CCC--CCH-HHHHHHHHHHHHHcCC-CeEEEEe
Confidence 541 221 2333478999999999 9988764
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.022 Score=56.04 Aligned_cols=101 Identities=5% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
+.+|||+-||+|..++.++...+ ...++..|+++...... +++.+.+... .+.++.+++..+... ..+.||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i--~~N~~~N~~~-~~~v~~~Da~~~l~~-~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI--KNNVEYNSVE-NIEVPNEDAANVLRY-RNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH--HHHHHHhCCC-cEEEEchhHHHHHHH-hCCCCCEEEe
Confidence 36899999999999999988642 34566666666555444 3333321111 344554433333211 1357999988
Q ss_pred ccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.- + ..+.+ ++..+.+.+++ ||.++++
T Consensus 121 DP-f-Gs~~~----fld~al~~~~~-~glL~vT 146 (374)
T TIGR00308 121 DP-F-GTPAP----FVDSAIQASAE-RGLLLVT 146 (374)
T ss_pred CC-C-CCcHH----HHHHHHHhccc-CCEEEEE
Confidence 65 4 22222 88999999999 9999987
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.012 Score=49.85 Aligned_cols=91 Identities=12% Similarity=0.195 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+...|-...+--.|+.++|+|||.|.+...+. .+.+..+.++|||+..+... +++.+. . .-.+.+.+++-.++.
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf--~rNaeE-f-EvqidlLqcdildle 109 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIF--TRNAEE-F-EVQIDLLQCDILDLE 109 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHH--hhchHH-h-hhhhheeeeeccchh
Confidence 344445444554568899999999999985443 34555566777777666655 333221 1 112334444222322
Q ss_pred CCCCCCceeEEEEccccc
Q 019282 248 KFGSGVVYDLIYASAVFL 265 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~ 265 (343)
+ ..+.||.++.+.-|.
T Consensus 110 -~-~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 110 -L-KGGIFDTAVINPPFG 125 (185)
T ss_pred -c-cCCeEeeEEecCCCC
Confidence 1 357899999887663
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.029 Score=53.26 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE-----ecccc-------ccCCCHHHHHHHHHhcCCcEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS-----HNIKF-------CSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~-----~~~~~-------~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+.||+|+..+.+. .......+++.+..+||| ||+.+=. |..+- ...++.+++.......||+++.
T Consensus 258 ~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~-GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFID--TAHNILEYIDTIYKILKP-GGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEee--chHHHHHHHHHHHHhccC-CcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 4699999875442 223445699999999999 9987532 21111 1223488999999999999998
Q ss_pred eeecc
Q 019282 321 KKTHD 325 (343)
Q Consensus 321 ~~~~~ 325 (343)
.+..+
T Consensus 335 e~~Id 339 (369)
T KOG2798|consen 335 ERGID 339 (369)
T ss_pred eeeee
Confidence 77543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0079 Score=60.38 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=72.9
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.++..+.+..+++.+..+||+-||||.+++.+++.. ..+.++.++++.... |+.++..+.. .+..|+.+.++
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~d--A~~nA~~Ngi-sNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVED--AEKNAQINGI-SNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcch--hhhcchhcCc-cceeeeecchh
Confidence 567788889999999999999999999999999998843 344455555554444 4544443322 36778888666
Q ss_pred CcCCCCCC---CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 245 DFTKFGSG---VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 245 dl~~~~~~---~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++-.-..+ +.-++|....--. .+-... +++.+.+.-+| -=.++++
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~--~ik~l~~~~~~-~rlvyvS 489 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPR-KGLHMK--VIKALRAYKNP-RRLVYVS 489 (534)
T ss_pred hccchhcccCCCCCceEEEECCCc-ccccHH--HHHHHHhccCc-cceEEEE
Confidence 65322111 1334333322111 111222 67777777667 5556665
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0052 Score=53.29 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=41.9
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CCCCCceeEEEEc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FGSGVVYDLIYAS 261 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~~~~~fDlIvs~ 261 (343)
.|+|+.||.|+.+++|++.+ ..++++|+|+ ...+.++.+.+ .|. ..++.++.++..++.. ......||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~--~~~~~a~hNa~vYGv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDP--ERLECAKHNAEVYGV-ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-H--HHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCH--HHHHHHHHHHHHcCC-CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999964 3455555555 44444454444 333 3478888885555432 1112228999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.00079 Score=57.42 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+++.|+|++.++++|+.-.+....++++++.||| ||.|-|+
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp-~G~LriA 85 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRP-GGKLRIA 85 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CcEEEEE
Confidence 47899999999999999988888899999999999 9999887
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.1 Score=46.16 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.++..+... --.+.++||+=+|+|.+++..+... ....+.++.|....... +++.+ .+... +..++..++..
T Consensus 31 EalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l--~~N~~~l~~~~-~~~~~~~da~~ 104 (187)
T COG0742 31 EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKIL--KENLKALGLEG-EARVLRNDALR 104 (187)
T ss_pred HHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHH--HHHHHHhCCcc-ceEEEeecHHH
Confidence 4455555321 2468899999999999998877632 23455666665444433 33222 33222 44555544443
Q ss_pred cCC-CCCCCceeEEEEcccccc-CCchHHHHHHHH--HHhccCCCCcEEEEEec
Q 019282 246 FTK-FGSGVVYDLIYASAVFLH-MPDKLVWVGLER--LASKLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~-~~~~~~fDlIvs~~v~~h-l~~~~~~~~L~~--l~r~LkP~GG~lvi~~~ 295 (343)
+.. ....++||+|+.---++. +.+... .+.. -..+|+| +|.+++.+.
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~--~~~~~~~~~~L~~-~~~iv~E~~ 155 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKEL--ALLLLEENGWLKP-GALIVVEHD 155 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHH--HHHHHHhcCCcCC-CcEEEEEeC
Confidence 321 112235999999877751 122222 2333 4578999 999999864
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.041 Score=52.05 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~ 238 (343)
.+.+..+..-.......+...++.+|||+.+|.|.=+.+++.... ...+.+.|++......-..+ ..+.|.. .+..
T Consensus 64 ~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~-~~r~g~~--~v~~ 140 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKEN-LKRLGVF--NVIV 140 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH-HHHTT-S--SEEE
T ss_pred CCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHH-HHhcCCc--eEEE
Confidence 344444444444444446788899999999999999999999776 44566777776555444222 1223432 3444
Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhcc----CCCCcEEEEEe
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKL----RPYDGRIFVSH 294 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~L----kP~GG~lvi~~ 294 (343)
...+...+........||.|+.- .++..-++.. ....|+.+.+.+ || ||+++.+.
T Consensus 141 ~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-gG~lvYsT 219 (283)
T PF01189_consen 141 INADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-GGRLVYST 219 (283)
T ss_dssp EESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-EEEEEEEE
T ss_pred EeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC-CCeEEEEe
Confidence 43322222111123469999962 2333323221 236889999999 99 99998763
Q ss_pred ccccccCCCHHHHHHHHHhc-CCcEEEee
Q 019282 295 NIKFCSRLGGEECTKRLTSL-GLEYIGKK 322 (343)
Q Consensus 295 ~~~~~~~~~~~~l~~~L~~a-Gf~~v~~~ 322 (343)
= .....-..+.+...|++. .|+.+...
T Consensus 220 C-S~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 220 C-SLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp S-HHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred c-cHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 0 011111256667777776 66665443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.037 Score=52.06 Aligned_cols=106 Identities=25% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCeEEEEcCCcCHHHHHHH-HH-cCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 182 NSHVLEIGCGTLRVGVHFI-RY-LNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la-~~-~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..+|+=||||.==++..+. +. .....++++|+|+.....+ ++..+ ......+..++.++..+... .-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a--~~lv~~~~~L~~~m~f~~~d~~~~~~--dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA--RRLVASDLGLSKRMSFITADVLDVTY--DLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH--HHHHH---HH-SSEEEEES-GGGG-G--G----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH--HHHHhhcccccCCeEEEecchhcccc--ccccCCEE
Confidence 3599999999765555444 32 2344567778887766555 33332 11224467777765554431 23589999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+...... +.......+|+.+.+.++| |..+++-
T Consensus 197 ~lAalVg-~~~e~K~~Il~~l~~~m~~-ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVG-MDAEPKEEILEHLAKHMAP-GARLVVR 229 (276)
T ss_dssp EE-TT-S-----SHHHHHHHHHHHS-T-TSEEEEE
T ss_pred EEhhhcc-cccchHHHHHHHHHhhCCC-CcEEEEe
Confidence 8876553 2223344599999999999 8887775
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.075 Score=49.17 Aligned_cols=108 Identities=26% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcE---EEecccCCcCCCCCCCc
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPI---IVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~---~~~~~~~dl~~~~~~~~ 254 (343)
...+|||+|.|+|..++..+... ...+..+|...........+.... .+... .+. +.-++..+.... ....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~-~v~v~~L~Wg~~~~~~~~-~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGG-SVIVAILVWGNALDVSFR-LPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCC-ceeEEEEecCCcccHhhc-cCCc
Confidence 45679999999997777666533 345555555443333332211111 11110 111 111122222212 1222
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+|+|+++.++.+-..... ++..++..|.. +|.+++..
T Consensus 163 ~DlilasDvvy~~~~~e~--Lv~tla~ll~~-~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEG--LVKTLAFLLAK-DGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecCCcchh--HHHHHHHHHhc-CCeEEEEE
Confidence 999999999977766655 78888999998 88766664
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.024 Score=52.36 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHhcCCCCCC--eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-------CC-CCCCcEEEe
Q 019282 171 EFLAEASHITPNS--HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-------GL-LHKRPIIVR 240 (343)
Q Consensus 171 ~~l~~~~~l~~~~--rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-------~~-~~~~~~~~~ 240 (343)
+.|.+..+++++. +|||.=+|+|..+..++. .++.++.++.++...+..+..... +. ...++.++.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 5677778888887 899999999999999987 455577777777766554432221 11 113456666
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCC
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMP 268 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~ 268 (343)
++..++..- ....||+|+.--+|.|-.
T Consensus 152 ~da~~~L~~-~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 152 ASSLTALTD-ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CcHHHHHhh-CCCCCcEEEECCCCCCCc
Confidence 655555432 234799999999998744
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.12 Score=50.02 Aligned_cols=128 Identities=12% Similarity=0.014 Sum_probs=79.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...+|.+|||.=+|-|.+++.++.+-... ++.+|+++.. ..+.+++...+-....+..+.+++.++... -+.+|.
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A--~~~L~eNi~LN~v~~~v~~i~gD~rev~~~--~~~aDr 259 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDA--VEYLKENIRLNKVEGRVEPILGDAREVAPE--LGVADR 259 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHH--HHHHHHHHHhcCccceeeEEeccHHHhhhc--cccCCE
Confidence 34568999999999999999999854332 5555555544 444454444333333466676655544421 168999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccccc--CCCHHHHHHHHHhcCCc
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS--RLGGEECTKRLTSLGLE 317 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~--~~~~~~l~~~L~~aGf~ 317 (343)
|++...- . ...++....+.+++ ||.+-.....+... ......+.....+.|++
T Consensus 260 Iim~~p~----~--a~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 260 IIMGLPK----S--AHEFLPLALELLKD-GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341)
T ss_pred EEeCCCC----c--chhhHHHHHHHhhc-CcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence 9987433 2 12378889999999 99886543211111 11356666666677654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.092 Score=47.02 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-------ccCCCCCCCcEEEecccCCcCCCCCCC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-------PSQGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-------~~~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
+...+.|||||-|.+...++..+|..- ++|+++......+.+++ .+.+. ..++.....+++-+. .+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtL--iLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~l----pn 132 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTL--ILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFL----PN 132 (249)
T ss_pred ccceEEeeccCccchhhhccccCccce--eeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhc----cc
Confidence 556799999999999999998887654 45555443332222211 11222 233444443333332 11
Q ss_pred ceeEEEEccccccCCchH-----------HHHHHHHHHhccCCCCcEEEEE
Q 019282 254 VYDLIYASAVFLHMPDKL-----------VWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~-----------~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
-|.--..+-+|+.++++. ..+++.+..=+|++ ||.++..
T Consensus 133 ~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~-gg~~yti 182 (249)
T KOG3115|consen 133 FFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE-GGILYTI 182 (249)
T ss_pred hhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhc-CceEEEE
Confidence 222222233333334432 12578888889999 9999876
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.032 Score=49.31 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=63.7
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
..+-|+|.|+|.++...+.+. .. ++.++..+...+++.++...... .+...+.+++.+ +.. +..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~r--ViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~---y~f-e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ER--VIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARD---YDF-ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ce--EEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccc---ccc-cccceeHHHH
Confidence 579999999999998777752 33 55555555666666665432222 245566664433 333 4679998854
Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
.=..+-++....++..+.+-|+- +|.++-
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~-d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRY-DPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhc-CCcccc
Confidence 44444444444578888889998 888864
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=48.74 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=82.1
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------------------------------C-----
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--------------------------------E----- 206 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--------------------------------~----- 206 (343)
+....+...|....+-+++..++|==||+|.+++..+-...+ .
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 345666777777777788889999999999999987764321 1
Q ss_pred --ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc-cCCchH-----HHHHHHH
Q 019282 207 --NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL-HMPDKL-----VWVGLER 278 (343)
Q Consensus 207 --~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~-hl~~~~-----~~~~L~~ 278 (343)
.+++.|+|...+..|..+. .+.|.. ..+.+.+++..++.... +.+|+|+|+--+. -+++.. -..+.+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA-~~AGv~-d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANA-RAAGVG-DLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred cceEEEecCCHHHHHHHHHHH-HhcCCC-ceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 2568888887766665443 224543 37778877555555331 7899999985542 223321 1234556
Q ss_pred HHhccCCCCcEEEEEec
Q 019282 279 LASKLRPYDGRIFVSHN 295 (343)
Q Consensus 279 l~r~LkP~GG~lvi~~~ 295 (343)
+++.++- -++.+++.+
T Consensus 330 lk~~~~~-ws~~v~tt~ 345 (381)
T COG0116 330 LKRLLAG-WSRYVFTTS 345 (381)
T ss_pred HHHHhcC-CceEEEEcc
Confidence 6677776 667777654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.42 Score=42.41 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC---------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK--------- 248 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~--------- 248 (343)
-++|+.+|||+||.+|.++.-..+...+.+ .+.|+|.-... +.....++.+ .|+.+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh~~------------p~~Ga~~i~~--~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLHIE------------PPEGATIIQG--NDVTDPETYRKIFE 130 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeeecc------------CCCCcccccc--cccCCHHHHHHHHH
Confidence 357899999999999999998888774333 35566652210 1111222222 12211
Q ss_pred CCCCCceeEEEEccccccCCchH----H-----HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKL----V-----WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~----~-----~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
..++-+.|+|++-..--..+... . .++|.-....++| +|.+++-...... ...+...| ++-|+.+
T Consensus 131 ~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p-~g~fvcK~w~g~e----~~~l~r~l-~~~f~~V 204 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP-NGSFVCKLWDGSE----EALLQRRL-QAVFTNV 204 (232)
T ss_pred hCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC-CcEEEEEEecCCc----hHHHHHHH-HHHhhhc
Confidence 11456789998854432222211 1 1233334567789 9999886321110 23344444 3445555
Q ss_pred EeeeccccccchhHHhh
Q 019282 320 GKKTHDSLLFNHYEIWF 336 (343)
Q Consensus 320 ~~~~~~~l~~~~~e~w~ 336 (343)
.....+.-...--|.+|
T Consensus 205 k~vKP~Asr~eS~E~y~ 221 (232)
T KOG4589|consen 205 KKVKPDASRDESAETYL 221 (232)
T ss_pred EeeCCccccccccceee
Confidence 54443333333344333
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.18 Score=53.25 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=44.3
Q ss_pred CceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 253 VVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 253 ~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+|+|+.-. ....-|+-....+|..++++++| ||++.--. ....++..|.++||++....
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~-~~~~~t~t--------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARP-GATLATFT--------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCC-CCEEEEee--------hHHHHHHHHHHcCCeeeecC
Confidence 4699998753 33344554556799999999999 98885321 25678899999999876543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.17 Score=50.76 Aligned_cols=106 Identities=18% Similarity=0.321 Sum_probs=64.7
Q ss_pred CCCCC-eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 179 ITPNS-HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~-rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+.+.. ++|.+|||.-.+..++-+..- ..++-+|++. ...+........ ......+... +++-..+ ++++||.
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~--V~V~~m~~~~~~--~~~~~~~~~~-d~~~l~f-edESFdi 117 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGF-EDITNIDSSS--VVVAAMQVRNAK--ERPEMQMVEM-DMDQLVF-EDESFDI 117 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCC-CCceeccccH--HHHHHHHhcccc--CCcceEEEEe-cchhccC-CCcceeE
Confidence 34445 999999999998888876322 3445555554 444433322211 1112233322 2222323 4789999
Q ss_pred EEEccccccCCchH--------HHHHHHHHHhccCCCCcEEEE
Q 019282 258 IYASAVFLHMPDKL--------VWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 258 Ivs~~v~~hl~~~~--------~~~~L~~l~r~LkP~GG~lvi 292 (343)
|+.-+.++++-.+. ....+.++.++|+| ||+.+.
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~-~gk~~s 159 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAP-GGKYIS 159 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhcc-CCEEEE
Confidence 99999998873321 23468899999999 999754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.24 Score=47.20 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=39.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-CCCCCcEEEecc-cCC-cCCCC-CCCceeE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-LLHKRPIIVRGE-DMD-FTKFG-SGVVYDL 257 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-~~~~~~~~~~~~-~~d-l~~~~-~~~~fDl 257 (343)
..++||||||....=-.|......-.+.++|||+..+..|.. +.+.+ ....++.++... ... +.... ..+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~--nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARE--NVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHH--HHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHH--HHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 568999999987653333333334567788888877766643 33333 334466554332 112 22121 3468999
Q ss_pred EEEccccccCCch
Q 019282 258 IYASAVFLHMPDK 270 (343)
Q Consensus 258 Ivs~~v~~hl~~~ 270 (343)
.+|+--|+.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9999888665554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.17 Score=46.86 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
-+.+++.+.. .+++..+|+|||||.==++..+....+...+++.|||......- +.... .+. ...... .
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l--~~~l~~l~~---~~~~~v---~ 161 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFL--NAFLAVLGV---PHDARV---R 161 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHH--HHHHHHTT----CEEEEE---E
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHH--HHHHHhhCC---CcceeE---e
Confidence 4556666653 45667899999999988877777655556777777776544333 32221 222 222221 2
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC--C-----HHHHHHHHHhcCCc
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL--G-----GEECTKRLTSLGLE 317 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~--~-----~~~l~~~L~~aGf~ 317 (343)
|+....+....|+....=+++-+..... ..--++.+.++ .-.++++++....... + ...+..++...|+.
T Consensus 162 Dl~~~~~~~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~--~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 162 DLLSDPPKEPADLALLLKTLPCLERQRR-GAGLELLDALR--SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp -TTTSHTTSEESEEEEET-HHHHHHHST-THHHHHHHHSC--ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEE
T ss_pred eeeccCCCCCcchhhHHHHHHHHHHHhc-chHHHHHHHhC--CCeEEEeccccccccCccccccCHHHHHHHhcccCCce
Confidence 4433335678999999877755533322 12233444444 2567788755443322 2 44455555556666
Q ss_pred EEEee
Q 019282 318 YIGKK 322 (343)
Q Consensus 318 ~v~~~ 322 (343)
+.+..
T Consensus 239 ~~~~~ 243 (251)
T PF07091_consen 239 VDRLT 243 (251)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 44433
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.6 Score=40.31 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=66.2
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
.++.+...+ .|++||=+|=+-- .++.++-...+..++|+|+|...+..- ++.++ .|+ .+.... .|+.+.
T Consensus 35 ~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI--~~~a~~~gl---~i~~~~---~DlR~~ 104 (243)
T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFI--NRVAEEEGL---PIEAVH---YDLRDP 104 (243)
T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHH--HHHHHHHT-----EEEE------TTS-
T ss_pred HHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHH--HHHHHHcCC---ceEEEE---eccccc
Confidence 334443333 5789999996553 333344334557899999998654332 32222 333 232222 344322
Q ss_pred -C--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCc-EEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 250 -G--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDG-RIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 250 -~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG-~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
+ ..++||+++..-... . ....-++.+....||. .| ..++...........--++.+.+.+.||.+.....
T Consensus 105 LP~~~~~~fD~f~TDPPyT-~--~G~~LFlsRgi~~Lk~-~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~-- 178 (243)
T PF01861_consen 105 LPEELRGKFDVFFTDPPYT-P--EGLKLFLSRGIEALKG-EGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIP-- 178 (243)
T ss_dssp --TTTSS-BSEEEE---SS-H--HHHHHHHHHHHHTB-S-TT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEE--
T ss_pred CCHHHhcCCCEEEeCCCCC-H--HHHHHHHHHHHHHhCC-CCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHh--
Confidence 1 358999999864331 1 2333489999999997 55 55655421111000023567778899997654332
Q ss_pred ccccchhHHh
Q 019282 326 SLLFNHYEIW 335 (343)
Q Consensus 326 ~l~~~~~e~w 335 (343)
.|++|+.|
T Consensus 179 --~Fn~Y~ga 186 (243)
T PF01861_consen 179 --DFNRYEGA 186 (243)
T ss_dssp --EEEEB---
T ss_pred --hhcccccc
Confidence 24555544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.1 Score=43.28 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=29.2
Q ss_pred eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc
Q 019282 184 HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL 226 (343)
Q Consensus 184 rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~ 226 (343)
.|||||||+|..+..+++..+.. +++.+++.+.+....++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~--~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG--RVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC--EEEEEecCHHHHHHHHHH
Confidence 38999999999999999876544 455556655655544443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.93 Score=46.27 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343)
+.+.+.+.+.+...+..+|.|-.||+|.+.....+++.. ..+++.+++......+..+... .+... ......++
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~-~~~i~~~d 249 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEG-DANIRHGD 249 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCc-cccccccc
Confidence 567777777777677789999999999999988887743 3356666656555555443221 22221 11111111
Q ss_pred cCCcCCC---CCCCceeEEEEccccc---cCC-------------------c-hHHHHHHHHHHhccCCCCcEEEEE--e
Q 019282 243 DMDFTKF---GSGVVYDLIYASAVFL---HMP-------------------D-KLVWVGLERLASKLRPYDGRIFVS--H 294 (343)
Q Consensus 243 ~~dl~~~---~~~~~fDlIvs~~v~~---hl~-------------------~-~~~~~~L~~l~r~LkP~GG~lvi~--~ 294 (343)
...-+.. ...+.||.|+++--+- +.. . .....+++.+...|+| ||+..|. +
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~-~g~aaivl~~ 328 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP-GGRAAIVLPD 328 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC-CceEEEEecC
Confidence 1111111 1236799999874442 110 1 1114689999999999 9876544 3
Q ss_pred ccccccCCCHHHHHHHHHh
Q 019282 295 NIKFCSRLGGEECTKRLTS 313 (343)
Q Consensus 295 ~~~~~~~~~~~~l~~~L~~ 313 (343)
+.-+... ....+++.+-+
T Consensus 329 gvlfr~~-~e~~IR~~l~~ 346 (489)
T COG0286 329 GVLFRGG-AEKDIRKDLLE 346 (489)
T ss_pred CcCcCCC-chHHHHHHHHh
Confidence 2222222 35666666655
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.46 Score=46.85 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCCceeEEEEccccccCCch------------------------------------HHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDK------------------------------------LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~------------------------------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.++.|++++...+||+..- ++..+|+.=.+-|.| ||+++++
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvp-GG~mvl~ 236 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKR-GGAMFLV 236 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcEEEEE
Confidence 67899999999999998630 122345555678999 9999987
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.2 Score=42.29 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=59.7
Q ss_pred eEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCc-------hHHHHHHHHH
Q 019282 208 FHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD-------KLVWVGLERL 279 (343)
Q Consensus 208 ~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~-------~~~~~~L~~l 279 (343)
+++.||-...... .+++.. .+.. .++.++......+..+...++.|+++.+..+.=-+| ......++.+
T Consensus 2 VyaFDIQ~~Ai~~--T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 2 VYAFDIQEEAIEN--TRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEES-HHHHHH--HHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred EEEEECHHHHHHH--HHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 3455555444333 343333 4433 377788776667776644458999999865521111 1234578899
Q ss_pred HhccCCCCcEEEEEeccccccCCC----HHHHHHH---HHhcCCcEEEeeecc
Q 019282 280 ASKLRPYDGRIFVSHNIKFCSRLG----GEECTKR---LTSLGLEYIGKKTHD 325 (343)
Q Consensus 280 ~r~LkP~GG~lvi~~~~~~~~~~~----~~~l~~~---L~~aGf~~v~~~~~~ 325 (343)
.++|+| ||.+.+.. +..+-+ .+.+.++ |....|.+...+..+
T Consensus 79 l~lL~~-gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKP-GGIITIVV---YPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEE-EEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhcc-CCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 999999 99998873 222222 2333344 445678877766543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.077 Score=48.68 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=67.7
Q ss_pred HHHHHhcCCCCCC--eEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh---cccCCCC-----CCCcEEEe
Q 019282 171 EFLAEASHITPNS--HVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE---LPSQGLL-----HKRPIIVR 240 (343)
Q Consensus 171 ~~l~~~~~l~~~~--rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~---~~~~~~~-----~~~~~~~~ 240 (343)
+.+.+..+++++. +|||.-+|-|+-+..++. + +..|++++.++...+..+. ....... ..++.++.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-L---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-H---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-c---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 4566667888774 899999999999998885 3 4468888887776554321 1111111 12567777
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHH-HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLV-WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~-~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
++..++.. ..+.+||+|++--||.+-..... ..-++-+..++.+ + ....+-+...++.+.-++|
T Consensus 139 ~d~~~~L~-~~~~s~DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~-----------d---~~~~ell~~Alr~Ar~RVV 203 (234)
T PF04445_consen 139 GDALEYLR-QPDNSFDVVYFDPMFPERKKSALVKKEMRVLRDLAGH-----------D---PDAEELLEEALRVARKRVV 203 (234)
T ss_dssp S-CCCHCC-CHSS--SEEEE--S-----TTTT-SHHHHHHHHHHSH-----------H---TTGGGGHHHHHHH-SSEEE
T ss_pred CCHHHHHh-hcCCCCCEEEECCCCCCcccccccccchHHHHHhhcc-----------C---cCHHHHHHHHHHhcCcEEE
Confidence 76666654 34689999999999977322211 0012222222222 0 0113445666777787777
Q ss_pred Eeeec
Q 019282 320 GKKTH 324 (343)
Q Consensus 320 ~~~~~ 324 (343)
-++..
T Consensus 204 vKrp~ 208 (234)
T PF04445_consen 204 VKRPR 208 (234)
T ss_dssp EEEET
T ss_pred EecCC
Confidence 65543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.034 Score=44.86 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=41.7
Q ss_pred ceeEEEEccccccC----CchHHHHHHHHHHhccCCCCcEEEEEecc--cc----------c-----cCCCHHHHHHHHH
Q 019282 254 VYDLIYASAVFLHM----PDKLVWVGLERLASKLRPYDGRIFVSHNI--KF----------C-----SRLGGEECTKRLT 312 (343)
Q Consensus 254 ~fDlIvs~~v~~hl----~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--~~----------~-----~~~~~~~l~~~L~ 312 (343)
.||+|+|..+--++ +|.....+|+++++.|+| ||.|++.-.. .+ . -.+.++.+...|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p-GG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP-GGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC-CCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 48999997765433 667777899999999999 9999998210 00 0 0122677777776
Q ss_pred h--cCCcEEE
Q 019282 313 S--LGLEYIG 320 (343)
Q Consensus 313 ~--aGf~~v~ 320 (343)
+ .||...+
T Consensus 80 ~~evGF~~~e 89 (110)
T PF06859_consen 80 EPEVGFSSVE 89 (110)
T ss_dssp STTT---EEE
T ss_pred hcccceEEEE
Confidence 6 5888765
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.081 Score=42.53 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343)
.+.....|||||.|.+...|.. .++.+.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~----EGy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS----EGYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh----CCCCcccccc
Confidence 3456799999999999887777 6888999987
|
; GO: 0008168 methyltransferase activity |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.4 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------CceEEEEcChhHHH
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--------ENFHCLERDELSLM 219 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--------~~~~vvdid~s~~~ 219 (343)
.+.+............+|+|+|.|+|.++..+++++.. ..++.+++++....
T Consensus 5 ~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 5 WIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp HHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred HHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 34444443222222469999999999999999997754 35777777765433
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.44 Score=46.16 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=60.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
..+.. ..++|+.+|+=+|+| -|.++.+++++.. ..++.+|.+....+.++++.+ ...+...+.+..+.
T Consensus 157 ~alk~-~~~~pG~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~ 225 (339)
T COG1064 157 RALKK-ANVKPGKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEA 225 (339)
T ss_pred eehhh-cCCCCCCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHH
Confidence 33443 678999999999887 4556666666544 455555555555555565422 12222211122111
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..+.||+|+..-. . . .+....+.|++ ||++++.
T Consensus 226 -~~~~~d~ii~tv~-~------~--~~~~~l~~l~~-~G~~v~v 258 (339)
T COG1064 226 -VKEIADAIIDTVG-P------A--TLEPSLKALRR-GGTLVLV 258 (339)
T ss_pred -hHhhCcEEEECCC-h------h--hHHHHHHHHhc-CCEEEEE
Confidence 1234999987533 1 1 67889999999 9999886
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.2 Score=47.27 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl 246 (343)
+++..+.... +...++||=||.|-|.+....+++-.-.++...++|..-.......-. ...++.+.++.+.-|+...|
T Consensus 109 emi~~l~l~s-~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f 187 (337)
T KOG1562|consen 109 EMIAHLALCS-HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF 187 (337)
T ss_pred eeeecccccc-CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH
Confidence 3444443322 344568999999999998877765322456677777655544432211 12455666777776655555
Q ss_pred CCCCCCCceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+....++||+|+.-..=.-.+. .....+++.+.+.||| ||++++.
T Consensus 188 l~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~q 235 (337)
T KOG1562|consen 188 LEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCTQ 235 (337)
T ss_pred HHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEEe
Confidence 44434689999986322211121 1234588899999999 9998775
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.2 Score=43.08 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHc--------CC--------CceEEEEcChhHHHHHHHHhcccC--CCCCCCcEEE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYL--------NP--------ENFHCLERDELSLMAAFRYELPSQ--GLLHKRPIIV 239 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~--------~~--------~~~~vvdid~s~~~~a~a~~~~~~--~~~~~~~~~~ 239 (343)
..+...+|+|+||.+|..++.+.... .. -.+.--|+..+.-..-+. .+... .....+..++
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~~~~~~~f~ 91 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSLKKFRNYFV 91 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHHHHTTSEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhccCCCceEEE
Confidence 44455799999999999999876522 11 123344444332211111 11000 0000133344
Q ss_pred ecccCCc-CCCCCCCceeEEEEccccccCCch-------------------------------------HHHHHHHHHHh
Q 019282 240 RGEDMDF-TKFGSGVVYDLIYASAVFLHMPDK-------------------------------------LVWVGLERLAS 281 (343)
Q Consensus 240 ~~~~~dl-~~~~~~~~fDlIvs~~v~~hl~~~-------------------------------------~~~~~L~~l~r 281 (343)
.+--..| ..+.+.++.|++++...+||+... ++..+|+.=++
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3322233 223368899999999999987531 11245555567
Q ss_pred ccCCCCcEEEEE
Q 019282 282 KLRPYDGRIFVS 293 (343)
Q Consensus 282 ~LkP~GG~lvi~ 293 (343)
-|+| ||+++++
T Consensus 172 ELv~-GG~mvl~ 182 (334)
T PF03492_consen 172 ELVP-GGRMVLT 182 (334)
T ss_dssp HEEE-EEEEEEE
T ss_pred eecc-CcEEEEE
Confidence 8999 9999987
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.39 Score=45.87 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+++.+.+.+.+.++..++|.=||.|..+..+++.+++..++++|.|+.. .+.+++... .. ..++.++.++-.++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~A--l~~ak~~L~-~~-~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQA--IAFAKERLS-DF-EGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHH--HHHHHHHHh-hc-CCcEEEEeCCHHHHHH
Confidence 4445555567788889999999999999999998765555555555544 444444322 12 2356666653222221
Q ss_pred CC---CCCceeEEEEc
Q 019282 249 FG---SGVVYDLIYAS 261 (343)
Q Consensus 249 ~~---~~~~fDlIvs~ 261 (343)
.. ..+++|.|++.
T Consensus 84 ~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 84 HLDELLVTKIDGILVD 99 (305)
T ss_pred HHHhcCCCcccEEEEe
Confidence 11 12468888764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.57 E-value=3 Score=38.92 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=83.4
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-CCCCcEEEecccCCcC-CCC--------CC
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-LHKRPIIVRGEDMDFT-KFG--------SG 252 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-~~~~~~~~~~~~~dl~-~~~--------~~ 252 (343)
..|+.+|||-=.-...+. .+ .++++.++|.......+.+.+.+.+. ...+...+.. |+. ++. ..
T Consensus 83 ~qvV~LGaGlDTr~~Rl~--~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~---Dl~~~w~~~L~~~gfd~ 156 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLP--WP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPV---DLRQDWPAALAAAGFDP 156 (260)
T ss_pred cEEEEeCCccccHHHhcC--CC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEecc---CchhhHHHHHHhCCCCC
Confidence 469999999754444332 12 35789999987766554444333222 1223344433 332 111 11
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------------------------ccCCCHHHHH
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------------CSRLGGEECT 308 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------------~~~~~~~~l~ 308 (343)
+.--++++-.++.+++......+|+.+.+...| |+.+++....+. ...+.++++.
T Consensus 157 ~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~-gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 157 TAPTAWLWEGLLMYLTEEAVDALLAFIAELSAP-GSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CCCeeeeecchhhcCCHHHHHHHHHHHHHhCCC-CcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 234577788899999999998999999999989 999887631110 0011278888
Q ss_pred HHHHhcCCcEEEe
Q 019282 309 KRLTSLGLEYIGK 321 (343)
Q Consensus 309 ~~L~~aGf~~v~~ 321 (343)
++|+..||+....
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 8999999987654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.62 Score=45.68 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=82.1
Q ss_pred CCchhhhhhhhhcc-CCCc-cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH
Q 019282 146 CPGELLVEEHHSNY-GEPW-AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR 223 (343)
Q Consensus 146 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a 223 (343)
.++...+++|+.-+ +..+ +...+....+.+.+.++++....|+|.|.|......+.+.....-.++.+...+...+..
T Consensus 155 ipd~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~ 234 (419)
T KOG3924|consen 155 IPDPAILNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAEL 234 (419)
T ss_pred cCCHHHHHHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHH
Confidence 34455567666444 3333 445556666777789999999999999999999998887655444455544333332222
Q ss_pred H--hccc----CCCCCCCcEEEecccCCcCCCC----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 224 Y--ELPS----QGLLHKRPIIVRGEDMDFTKFG----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 224 ~--~~~~----~~~~~~~~~~~~~~~~dl~~~~----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+ .+.. .|...+....+.+ ++.+.. .....++|+++.+. .-++... -++++...+++ |-+++-.
T Consensus 235 ~~~~~kk~~k~fGk~~~~~~~i~g---sf~~~~~v~eI~~eatvi~vNN~~-Fdp~L~l--r~~eil~~ck~-gtrIiS~ 307 (419)
T KOG3924|consen 235 NKEEFKKLMKHFGKKPNKIETIHG---SFLDPKRVTEIQTEATVIFVNNVA-FDPELKL--RSKEILQKCKD-GTRIISS 307 (419)
T ss_pred HHHHHHHHHHHhCCCcCceeeccc---ccCCHHHHHHHhhcceEEEEeccc-CCHHHHH--hhHHHHhhCCC-cceEecc
Confidence 1 1111 1222223334433 332111 23457888887665 3344333 56789999998 7666543
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.71 Score=45.66 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=65.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceE-EEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFH-CLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~-vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+...++.||||..+-+|.=+.++|....+.+.. ..|........-.+ ...+.|.. +.+.+..+...|+.-...++|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~-n~~rlGv~--ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKA-NLHRLGVT--NTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHH-HHHHhCCC--ceEEEccCcccccccccCccc
Confidence 566889999999999999999999877665543 33333332222211 11223432 334444433344322233489
Q ss_pred eEEEEcccccc--CC--c----------------hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 256 DLIYASAVFLH--MP--D----------------KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 256 DlIvs~~v~~h--l~--~----------------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|.|..-.-..- +. + .....+|.....+++| ||+|+.+
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~-GGvLVYS 370 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA-GGVLVYS 370 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC-CcEEEEE
Confidence 99985321111 00 0 0123578888999999 9999876
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.36 Score=43.49 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=61.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC----CCC
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG----SGV 253 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~ 253 (343)
...|+|+|.=.|+-+..++..+ +...+.++|+|......... +......++.++.|+..+..... ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~----e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI----ESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG----GG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH----hhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 3489999999999999887644 44667777777654332211 11112357888888655432111 112
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec------------ccccc-CCCHHHHHHHHHhcC-CcE
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN------------IKFCS-RLGGEECTKRLTSLG-LEY 318 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~------------~~~~~-~~~~~~l~~~L~~aG-f~~ 318 (343)
..+-++...=-+|..+.. ...|+....+++| |+++++.+. .++.. ......+.+.|.+.. |++
T Consensus 109 ~~~~vlVilDs~H~~~hv-l~eL~~y~plv~~-G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~i 185 (206)
T PF04989_consen 109 PPHPVLVILDSSHTHEHV-LAELEAYAPLVSP-GSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEI 185 (206)
T ss_dssp --SSEEEEESS----SSH-HHHHHHHHHT--T-T-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEE
T ss_pred cCCceEEEECCCccHHHH-HHHHHHhCccCCC-CCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEe
Confidence 234233222223333322 2367889999999 999998731 11111 111677888887765 543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.6 Score=42.59 Aligned_cols=113 Identities=16% Similarity=0.198 Sum_probs=65.8
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCC----ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC---
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPE----NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--- 249 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~----~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--- 249 (343)
++++|+.+|||...-+|.=+..+++.+.+. .+.+-|+|......-. .+.. .+..........+...++..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~-~q~~--~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLV-HQLK--RLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHH-HHHh--ccCCcceeeecccceeccccccc
Confidence 688999999999999999999998876533 4556666654432221 1111 11221222222222223222
Q ss_pred --C--CCCceeEEEEc------cccccCCch---------------HHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 --G--SGVVYDLIYAS------AVFLHMPDK---------------LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 --~--~~~~fDlIvs~------~v~~hl~~~---------------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. ....||-|.+- .++.+-++- -...+|.+..++||+ ||.++.+
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~-GG~lVYS 295 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKV-GGRLVYS 295 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 1 23468988863 233222221 112578889999999 9999876
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=4.5 Score=37.57 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCC----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc-cCCcCCCCCCC
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNP----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE-DMDFTKFGSGV 253 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~-~~dl~~~~~~~ 253 (343)
+..+...+|+|.|+-.=+..+.+.+.. ..+..+|++.+-+... ++.+.. ..+.-.+.-+.++ ...+...+ .+
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t-a~ai~~-~y~~l~v~~l~~~~~~~La~~~-~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT-ATAILR-EYPGLEVNALCGDYELALAELP-RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH-HHHHHH-hCCCCeEeehhhhHHHHHhccc-CC
Confidence 344678999999999999999887755 4566777776554433 222221 1222122222221 01112222 22
Q ss_pred cee-EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 254 VYD-LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 254 ~fD-lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.-- .++...++..+.+.+...+|..+...|+| |-.+++.
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~p-Gd~~LlG 192 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRP-GDYFLLG 192 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCC-cceEEEe
Confidence 222 23345677788888888899999999999 8888774
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.14 Score=46.48 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-C-CCCceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-G-SGVVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~-~~~~fDl 257 (343)
....|+|.-||-|+.+..++.. ..+|+.||..+..++.++.+.+ .|+++ ++.+++|+..|+-.. . ....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~----~~~VisIdiDPikIa~AkhNaeiYGI~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ----GPYVIAIDIDPVKIACARHNAEVYGVPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh----CCeEEEEeccHHHHHHHhccceeecCCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 4458999999999999999884 4457777777788888887766 67766 999999855554211 1 1234566
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCC
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRP 285 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP 285 (343)
|+.+.- +-++.....-+-.+...++|
T Consensus 169 vf~spp--wggp~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 169 VFLSPP--WGGPSYLRADVYDLETHLKP 194 (263)
T ss_pred eecCCC--CCCcchhhhhhhhhhhhcch
Confidence 655421 12222222334445555555
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.21 E-value=2.9 Score=40.85 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=60.1
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-----cCCC
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-----FTKF 249 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-----l~~~ 249 (343)
...+.++.+||.+|||. |..+..+++..+...+.++ +.+..+...+++.. +. ..+.....+ +.++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~--~~-----~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHL--GA-----ETINFEEVDDVVEALREL 249 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcC--Cc-----EEEcCCcchHHHHHHHHH
Confidence 35677889999999988 8888888887643234444 44444444444321 11 111111111 1112
Q ss_pred CCCCceeEEEEcccc-----------ccC----CchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVF-----------LHM----PDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~-----------~hl----~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.....+|+|+-.-.- .|. ++. ...+.++.++++| +|++++.
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~G~iv~~ 305 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK-GGTVSII 305 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCc--hHHHHHHHHHhcc-CCEEEEE
Confidence 123368888764211 111 222 2378999999999 9999875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.93 Score=41.42 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=30.7
Q ss_pred HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 273 WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 273 ~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
...+.+++|+||| ||.+++... ......+...++++||.+..
T Consensus 52 ~~~l~E~~RVLKp-gg~l~if~~-----~~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 52 QPACNEMYRVLKK-DALMVSFYG-----WNRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHcCC-CCEEEEEec-----cccHHHHHHHHHHCCCEEee
Confidence 4588999999999 999876432 11234566778899998664
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.79 E-value=3.3 Score=39.60 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=42.5
Q ss_pred hccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHH
Q 019282 157 SNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAA 221 (343)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a 221 (343)
+||...|++...+.+++.. ......|+.+|||.-.....+...........+++|-++....
T Consensus 66 Gy~~R~~aI~~~v~~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~r 127 (335)
T KOG2918|consen 66 GYWARTMAIRHAVRAFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVER 127 (335)
T ss_pred hhhHHHHHHHHHHHHHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHH
Confidence 3333333455566666654 4555789999999998888888766445667888887766554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.47 Score=47.20 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=51.3
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
..|||||+|||.++...+++.. .. |+.++.-..|...+++... .+..+ .+..+.....+....+ ...-|.++.-
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~--vtA~EvfkPM~d~arkI~~kng~Sd-kI~vInkrStev~vg~-~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DS--VTACEVFKPMVDLARKIMHKNGMSD-KINVINKRSTEVKVGG-SSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-Ce--EEeehhhchHHHHHHHHHhcCCCcc-ceeeeccccceeeecC-cchhhhhhHh
Confidence 4699999999999998888653 33 4444444455555566544 34433 5666654334443221 2235555443
Q ss_pred cccccC-CchHHHHHHHHHHh-ccCC
Q 019282 262 AVFLHM-PDKLVWVGLERLAS-KLRP 285 (343)
Q Consensus 262 ~v~~hl-~~~~~~~~L~~l~r-~LkP 285 (343)
.....+ +...++ .++..++ +++|
T Consensus 143 ~fdtEligeGalp-s~qhAh~~L~~~ 167 (636)
T KOG1501|consen 143 DFDTELIGEGALP-SLQHAHDMLLVD 167 (636)
T ss_pred hhhhhhhccccch-hHHHHHHHhccc
Confidence 222222 222332 3455544 4454
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.58 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=48.7
Q ss_pred CCceeEEEEccccccCCc-----h----HHHHHHHHHHhccCCCCcEEEEEecc-----cc--ccCCCHHHHHHHHHhcC
Q 019282 252 GVVYDLIYASAVFLHMPD-----K----LVWVGLERLASKLRPYDGRIFVSHNI-----KF--CSRLGGEECTKRLTSLG 315 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~-----~----~~~~~L~~l~r~LkP~GG~lvi~~~~-----~~--~~~~~~~~l~~~L~~aG 315 (343)
.++||.+.|..+++|.+- + .....+.++.++||| ||.+++..+. .| .+-|++..+.-++ .|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~-GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~--~g 137 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKP-GGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMF--YG 137 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhcc-CCeEEEEeecCCcceEEecceeecHhHHHHHh--CC
Confidence 578999999999998632 1 122478899999999 9999987422 12 3334555554333 79
Q ss_pred CcEEEeeecc
Q 019282 316 LEYIGKKTHD 325 (343)
Q Consensus 316 f~~v~~~~~~ 325 (343)
|+.+..-..+
T Consensus 138 fe~i~tfs~~ 147 (177)
T PF03269_consen 138 FEWIDTFSGD 147 (177)
T ss_pred cEEEeeeccC
Confidence 9988765443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.7 Score=37.33 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=77.0
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHH--HHHhcccCCCCCCCcEEEecccCCcC-CCC-
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAA--FRYELPSQGLLHKRPIIVRGEDMDFT-KFG- 250 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a--~a~~~~~~~~~~~~~~~~~~~~~dl~-~~~- 250 (343)
.++++|+.+||=+|.+.|+.-.+..+-..+.+ ++.++.+...-..- .+++ .. +++-+..++ ..+ .|.
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----Rt--NiiPIiEDA-rhP~KYRm 222 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RT--NIIPIIEDA-RHPAKYRM 222 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cC--CceeeeccC-CCchheee
Confidence 36789999999999999999999888665544 45666555433222 1221 11 222221111 111 111
Q ss_pred CCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEEeccccccCCC------HHHHHHHHHhcCCcEEEeee
Q 019282 251 SGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG------GEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~------~~~l~~~L~~aGf~~v~~~~ 323 (343)
.-.-.|+|++ .++.+ +...+.-+..--||+ ||.++|+...+-+...- ..+. +.|++.-++..+.-+
T Consensus 223 lVgmVDvIFa-----Dvaqpdq~RivaLNA~~FLk~-gGhfvisikancidstv~ae~vFa~Ev-~klqee~lkP~Eqvt 295 (317)
T KOG1596|consen 223 LVGMVDVIFA-----DVAQPDQARIVALNAQYFLKN-GGHFVISIKANCIDSTVFAEAVFAAEV-KKLQEEQLKPKEQVT 295 (317)
T ss_pred eeeeEEEEec-----cCCCchhhhhhhhhhhhhhcc-CCeEEEEEecccccccccHHHHHHHHH-HHHHHhccCchheec
Confidence 1235677765 34333 233345567788999 99999985433222211 2222 356666676655555
Q ss_pred ccccccch
Q 019282 324 HDSLLFNH 331 (343)
Q Consensus 324 ~~~l~~~~ 331 (343)
..++--.|
T Consensus 296 LEP~erdh 303 (317)
T KOG1596|consen 296 LEPFERDH 303 (317)
T ss_pred cccccCCc
Confidence 44443333
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=2.5 Score=38.80 Aligned_cols=101 Identities=23% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHHHHhcC-C-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec--cc
Q 019282 168 DVFEFLAEASH-I-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG--ED 243 (343)
Q Consensus 168 ~~~~~l~~~~~-l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~--~~ 243 (343)
.+.+.|....+ + .++.++||||.|.-..=-.+-..--.-.++++++|...+..+.+.-..+.++.. .+.+... ..
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~-~I~lr~qk~~~ 141 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER-AIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh-heeEEeccCcc
Confidence 34444444322 2 356789999888754311111100113456777777766666443222222221 2222211 12
Q ss_pred CCcCCCC-CCCceeEEEEccccccCCc
Q 019282 244 MDFTKFG-SGVVYDLIYASAVFLHMPD 269 (343)
Q Consensus 244 ~dl~~~~-~~~~fDlIvs~~v~~hl~~ 269 (343)
.-|++.. ..+.||++.|+--||.-.+
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~s~~ 168 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHDSAA 168 (292)
T ss_pred ccccccccccceeeeEecCCCcchhHH
Confidence 2233332 3678999999999975443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=6.2 Score=40.51 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC---------cC-
Q 019282 179 ITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD---------FT- 247 (343)
Q Consensus 179 l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d---------l~- 247 (343)
..++.+||=+|||. |..+...++.++. .++++|+++ ...+.++... . ....+.....+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~--~rle~aeslG---A---~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRP--EVAEQVESMG---A---EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCH--HHHHHHHHcC---C---eEEEeccccccccccchhhhcch
Confidence 45788999999995 6666677776654 455666555 4444444422 1 10111100000 00
Q ss_pred C--------CC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 K--------FG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~--------~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+ +. ..+.+|+|+.......-+.+.. +.+++.+.+|| ||+++..
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~l--it~~~v~~mkp-GgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKL--ITAEMVASMKP-GSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcch--HHHHHHHhcCC-CCEEEEE
Confidence 0 00 0146899998665433223322 45999999999 9998754
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.13 E-value=0.91 Score=42.69 Aligned_cols=120 Identities=20% Similarity=0.216 Sum_probs=62.2
Q ss_pred ccchHHHHHHHHHhc---CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHH------------HHHHhcc
Q 019282 163 WAGGRDVFEFLAEAS---HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMA------------AFRYELP 227 (343)
Q Consensus 163 ~~~~~~~~~~l~~~~---~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~------------a~a~~~~ 227 (343)
|...-..+..+.+.. -...+++|||+|||.|.-.+....... +.+.-.|.+.... ....+..
T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~---~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~ 171 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA---VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEK 171 (282)
T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc---ceeeeEecchhheeeecccceecchhhhhhhh
Confidence 555555666666442 234578999999999988877655321 2222222222222 1110100
Q ss_pred cCCCCCCCcEEEecccCCcCCCC--CCC--ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 228 SQGLLHKRPIIVRGEDMDFTKFG--SGV--VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 228 ~~~~~~~~~~~~~~~~~dl~~~~--~~~--~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.. .+..+. ...+.++. ..+ .||+|.++.++........ -+......++++ +|.++..
T Consensus 172 e~~----~~~~i~--~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~-~~~~~r~~l~~~-D~~~~~a 233 (282)
T KOG2920|consen 172 ENH----KVDEIL--NSLLSDGVFNHTERTHYDLILSSETIYSIDSLAV-LYLLHRPCLLKT-DGVFYVA 233 (282)
T ss_pred hcc----cceecc--ccccccchhhhccccchhhhhhhhhhhCcchhhh-hHhhhhhhcCCc-cchhhhh
Confidence 000 000000 01000111 123 7999999998855544433 125666778888 9988765
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.5 Score=42.08 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-- 250 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-- 250 (343)
+.+.+...++..++|.--|.|+.+..+++.+++..+.++|.|+.....+ +++... . ..+..++.++-.++.++.
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a--~~~l~~-~-~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERA--KERLKK-F-DDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHH--HCCTCC-C-CTTEEEEES-GGGHHHHHHH
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHH--HHHHhh-c-cceEEEEeccHHHHHHHHHH
Confidence 3344467788899999999999999999988876666777666554444 443321 1 346777765222221110
Q ss_pred --CCCceeEEEEc
Q 019282 251 --SGVVYDLIYAS 261 (343)
Q Consensus 251 --~~~~fDlIvs~ 261 (343)
....+|.|++-
T Consensus 88 ~~~~~~~dgiL~D 100 (310)
T PF01795_consen 88 LNGINKVDGILFD 100 (310)
T ss_dssp TTTTS-EEEEEEE
T ss_pred ccCCCccCEEEEc
Confidence 12478888763
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.5 Score=40.65 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=64.5
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCc----CC
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDF----TK 248 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl----~~ 248 (343)
...+++|.+||=+|+|+ |..+...++.++...+.++|++...+..+ +++..... ....... .++ ..
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~A--k~~Ga~~~-----~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELA--KKFGATVT-----DPSSHKSSPQELAELVEK 236 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHH--HHhCCeEE-----eeccccccHHHHHHHHHh
Confidence 35788999999999994 77777778888888888888777555554 55432111 1111000 011 11
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...+..+|+.+-...++ . .++.....+++ ||.+++.
T Consensus 237 ~~g~~~~d~~~dCsG~~------~--~~~aai~a~r~-gGt~vlv 272 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE------V--TIRAAIKATRS-GGTVVLV 272 (354)
T ss_pred hccccCCCeEEEccCch------H--HHHHHHHHhcc-CCEEEEe
Confidence 11224588887655442 2 67778889999 9998776
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.7 Score=36.01 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343)
+.++.....+.-++..+.+|+|.|.|+.-...++.. . ...+|++.++-..++.+-
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~--~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-L--RPAVGVELNPWLVAYSRL 113 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-C--CcCCceeccHHHHHHHHH
Confidence 344444444555666799999999999988887743 1 234445555555555543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=85.52 E-value=3.2 Score=39.00 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=55.5
Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---CCCC
Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---KFGS 251 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---~~~~ 251 (343)
...+.++.+||..|+| .|..+..+++..+ +.++.++.+.......++. +. . ..+........ ....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s~~~~~~~~~~---g~-~---~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIKEEKLELAKEL---GA-D---EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHHh---CC-C---EEEcCCCcCHHHHHHHhc
Confidence 3457788899998876 3677777777543 3455555555444444321 21 1 11111111110 0112
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.+|+|+..... . ..++++.+.|++ +|.++..
T Consensus 230 ~~~~D~vid~~g~-----~---~~~~~~~~~l~~-~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT-----Q---PTFEDAQKAVKP-GGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC-----H---HHHHHHHHHhhc-CCEEEEE
Confidence 4568988754221 1 267889999999 9998764
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=84.20 E-value=3 Score=38.99 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-----CCCceEEEEcCh
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-----NPENFHCLERDE 215 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-----~~~~~~vvdid~ 215 (343)
.++..+.+.--+.++..++|+|||.|.++.+++..+ +...+..+|...
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 355666665556788899999999999999999987 345666777654
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=12 Score=35.72 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=52.6
Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCc
Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~ 254 (343)
....++.+||=+||| .|.++..+++......+.+++.+. ...+.++++... ..+.....++.+.. ..+.
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLAREMGAD-------KLVNPQNDDLDHYKAEKGY 235 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHHHcCCc-------EEecCCcccHHHHhccCCC
Confidence 345578899989875 344555556654433344555544 344444443211 11111111221111 1235
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|+|+-. .+... .+....+.|+| ||++++.
T Consensus 236 ~D~vid~-----~G~~~---~~~~~~~~l~~-~G~iv~~ 265 (343)
T PRK09880 236 FDVSFEV-----SGHPS---SINTCLEVTRA-KGVMVQV 265 (343)
T ss_pred CCEEEEC-----CCCHH---HHHHHHHHhhc-CCEEEEE
Confidence 8888653 33322 57788899999 9999875
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=83.84 E-value=22 Score=35.03 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcC-----CCceEEEEcCh
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLN-----PENFHCLERDE 215 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~-----~~~~~vvdid~ 215 (343)
...-.+..+|+|+|.|.|.--..|.+.+. +..+++|+++.
T Consensus 105 A~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 105 AFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 33444677999999999987777776552 23567777766
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.77 E-value=5.1 Score=38.16 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc-eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN-FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG 241 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~-~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~ 241 (343)
+++...+.+..+++...+|.--|.|+.+..++..++..+ ++++|.|+.....+ +++... ...++.++.+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a--~~~l~~--~~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIA--KERLKE--FDGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHH--HHHhhc--cCCcEEEEeC
Confidence 455566667888899999999999999999999987655 78888887666655 333221 1236677765
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=4.1 Score=38.36 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=42.9
Q ss_pred EEEecccCCcCCCCCCCceeEEEEcccccc------CC-----c---hHHHHHHHHHHhccCCCCcEEEEEeccccccCC
Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLH------MP-----D---KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302 (343)
Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h------l~-----~---~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~ 302 (343)
.++.++..++.....+++||+|++.--+.- .. . .....++.++.++||| ||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~-~G~i~i~~~~~~---- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKK-QGTMYIMNSTEN---- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCC-CcEEEEEcCchh----
Confidence 345454444321224568888888543311 00 0 1123588999999999 999998643211
Q ss_pred CHHHHHHHHHhcCCcEEE
Q 019282 303 GGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~ 320 (343)
.. ....+.+.||....
T Consensus 85 -~~-~~~~~~~~~f~~~~ 100 (284)
T PRK11524 85 -MP-FIDLYCRKLFTIKS 100 (284)
T ss_pred -hh-HHHHHHhcCcceEE
Confidence 11 23445567876544
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=82.71 E-value=4.4 Score=34.63 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343)
.++..+++........+| -|||+|=|.|+.=-++.+.++...++|.|-..
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l 62 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRAL 62 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS-
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeec
Confidence 366777887777665544 79999999999999999999999999988543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=3.5 Score=40.26 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHc--------CCCceEEEEcCh
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYL--------NPENFHCLERDE 215 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~--------~~~~~~vvdid~ 215 (343)
...++...++|||.|+|.++..+++.+ ....+..+++++
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 455666789999999999999998865 235566666655
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=81.38 E-value=2 Score=35.53 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=40.3
Q ss_pred CceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 253 VVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 253 ~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
..||+|+... ...--|+-....+|++++++++| ||.+.--. ....++..|.++||++.....
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~-~~~l~Tys--------~a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKP-GGTLATYS--------SAGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEE-EEEEEES----------BHHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCC-CcEEEEee--------chHHHHHHHHHcCCEEEEcCC
Confidence 5788888754 22222333345689999999999 88774321 135688999999999876554
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.01 E-value=5.7 Score=38.58 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
...++.+|+=+|||+ |.++..+++.++...+.++|.++. ..+++++.............. .............+|
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~--Rl~~A~~~~g~~~~~~~~~~~--~~~~~~~~t~g~g~D 240 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE--RLELAKEAGGADVVVNPSEDD--AGAEILELTGGRGAD 240 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHHHHHhCCCeEeecCcccc--HHHHHHHHhCCCCCC
Confidence 344555999999996 666677777777777666666554 444444421110000000000 000011111123689
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+++-... . ...+..+.++++| ||.+++.
T Consensus 241 ~vie~~G-----~---~~~~~~ai~~~r~-gG~v~~v 268 (350)
T COG1063 241 VVIEAVG-----S---PPALDQALEALRP-GGTVVVV 268 (350)
T ss_pred EEEECCC-----C---HHHHHHHHHHhcC-CCEEEEE
Confidence 9875433 1 1278999999999 9999775
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.96 E-value=9.8 Score=30.05 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCcCHHHHHHHHHcCCCc--eEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEEEEccccc
Q 019282 190 CGTLRVGVHFIRYLNPEN--FHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLIYASAVFL 265 (343)
Q Consensus 190 CGtG~~a~~la~~~~~~~--~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlIvs~~v~~ 265 (343)
||+|.++..+++.+...+ +.+++.++.. ....+. .+ ...+.++..+...+. .-...|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~--~~~~~~---~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~---- 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPER--VEELRE---EG-----VEVIYGDATDPEVLERAGIEKADAVVIL---- 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHH--HHHHHH---TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHH--HHHHHh---cc-----cccccccchhhhHHhhcCccccCEEEEc----
Confidence 678889999998775544 5555555533 332222 12 334555433332111 12467777764
Q ss_pred cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 266 HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 266 hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
.+++..-..+....+.+.| ...++.... .++..+.|+++|...+
T Consensus 70 -~~~d~~n~~~~~~~r~~~~-~~~ii~~~~--------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 70 -TDDDEENLLIALLARELNP-DIRIIARVN--------DPENAELLRQAGADHV 113 (116)
T ss_dssp -SSSHHHHHHHHHHHHHHTT-TSEEEEEES--------SHHHHHHHHHTT-SEE
T ss_pred -cCCHHHHHHHHHHHHHHCC-CCeEEEEEC--------CHHHHHHHHHCCcCEE
Confidence 2344443355666777888 777776542 2445677888887644
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 26/196 (13%)
Query: 151 LVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHC 210
V+ Y E +A D+ E + +VLE G GT G + L
Sbjct: 19 FVQGEDIQYKEVFAHYEDILEDVVNK----SFGNVLEFGVGT---G-NLTNKLLLAGRTV 70
Query: 211 LERDELSLMAAFRYELPSQGLL----HKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH 266
+ PS+ + K P + DF F D I ++ F H
Sbjct: 71 YGIE------------PSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHH 118
Query: 267 MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDS 326
+ D V + + + L G+I + I + ++ + G +
Sbjct: 119 LTDDEKNVAIAKYSQLLNK-GGKIVFADTIFA-DQDAYDKTVEAAKQRGFHQLANDLQTE 176
Query: 327 LLFNHYEIWFEFRRSG 342
+ F +G
Sbjct: 177 YYTRIPVMQTIFENNG 192
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 159 YGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFH--CLERDEL 216
+ + + R E L + P L++GCG R + YL + +++ +
Sbjct: 11 FTDKYELTRTHSEVLEAVKVVKP-GKTLDLGCGNGRNSL----YLAANGYDVDAWDKNAM 65
Query: 217 SLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGL 276
S+ + L + +V ++ F + YD I ++ V + + K + +
Sbjct: 66 SIANV-ERIKSIENLDNLHTRVVDLNNLTFDR-----QYDFILSTVVLMFLEAKTIPGLI 119
Query: 277 ERLASKLRPYDGRIFVSH 294
+ +P + V+
Sbjct: 120 ANMQRCTKPGGYNLIVAA 137
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-07
Identities = 59/351 (16%), Positives = 99/351 (28%), Gaps = 97/351 (27%)
Query: 21 VLTLSVAA------IFFF--FLLSSLSTCNCPLSSTTTDAANAVRNGAVSDFARSEDDSS 72
+ L V F F L+ L CN P T + + ++ D SS
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN-LKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 73 SSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLRKGI----NPR------TRAQQLQ 122
+ R E ++ + ++N L + NV N TR +Q+
Sbjct: 222 NIKLRIHS---IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 123 DLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPN 182
D + +H ++ H +V L +
Sbjct: 279 DFLSAATTTHIS-----------------LDHHSMTLTPD-----EVKSLLLK------- 309
Query: 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLH-----KR 235
L+ L V NP LS++A + + H
Sbjct: 310 --YLDCRPQDLPREVLTT---NP--RR------LSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 236 PIIVRGEDMDFTKFGSGVVYDLIYASAVF---LHMPDKLVWVGLERLASKLRPYDGRIFV 292
II + + +VF H+P L L + + D + V
Sbjct: 357 TII----ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFDVIKSDVMVVV 408
Query: 293 SHNIKFCSRL----GGEECTKRLTSLGLEYIGKKT-----HDSLLFNHYEI 334
+ K +E T + S+ LE K H S++ +HY I
Sbjct: 409 N---KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNI 455
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 42/269 (15%), Positives = 78/269 (28%), Gaps = 89/269 (33%)
Query: 105 DNVLRKGINPRTRAQQLQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSNYGEPWA 164
D+++ + + +L + K + + + E NY
Sbjct: 52 DHIIMSK-DAVSGTLRLFWTLLSKQEEMVQ--------------KFVEEVLRINYK---- 92
Query: 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-----PENF--HCLERDELS 217
FL + +I + + F + + R +
Sbjct: 93 -------FLMSPIKTEQRQPSMMT--------RMYIEQRDRLYNDNQVFAKYNVSRLQP- 136
Query: 218 LMAAFRYELPSQGLLHKRP---IIVRGEDMDFTKFGSG---VVYDLIYASAVFLHMPDKL 271
R Q LL RP +++ G + GSG V D+ + V M K+
Sbjct: 137 -YLKLR-----QALLELRPAKNVLIDG--V----LGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 272 VWVG-------------LERLASKLRP-YDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317
W+ L++L ++ P + R S NI +L L L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRL--- 237
Query: 318 YIGKKTH-DSLLF----NHYEIW--FEFR 339
+ K + + LL + + W F
Sbjct: 238 -LKSKPYENCLLVLLNVQNAKAWNAFNLS 265
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-07
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFH--CLERDELSLMAAFR 223
L VLE+ GT G ++ R+L+ L+ + A R
Sbjct: 31 DSAAPAALERLRAGNIRGDVLELASGT---G-YWTRHLSGLADRVTALDGSAEMIAEAGR 86
Query: 224 YELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKL 283
+ L + V D + +D ++ + H+PD E + S +
Sbjct: 87 HGLDN----------VEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAV 136
Query: 284 RPYDGRIFVS 293
P G +
Sbjct: 137 AP-GGVVEFV 145
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 13/141 (9%)
Query: 155 HHSNYGEPWAGGRDVFE-FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLER 213
+ + + E L + P + VLE GCG V + ++
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 214 DELSLMAAFRYELPSQGLLHKRPIIVRG--EDMDFTKFGSGVVYDLIYASAVFLHMPDKL 271
SL A R G+ + + ++ + F S +D I+ V H+
Sbjct: 70 SPESLEKA-RENTEKNGIKNVK--FLQANIFSLPFED-SS---FDHIFVCFVLEHLQSPE 122
Query: 272 VWVGLERLASKLRPYDGRIFV 292
L+ L L+P G I V
Sbjct: 123 --EALKSLKKVLKP-GGTITV 140
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 9e-07
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 26/158 (16%)
Query: 148 GELLVEEHHS----NYGEPWAGGRDVFEF---------LAEASHITPNSHVLEIGCGTLR 194
+ +E + PW R + + A + IG G L
Sbjct: 76 LGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLP 135
Query: 195 VGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254
+ + ++ + +E + + R + G+ I +D +F
Sbjct: 136 LTGILLSHVYGMRVNVVEIEPDIAELS-RKVIEGLGVDGVNVITGDETVIDGLEF----- 189
Query: 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292
D++ +A K + + + RI
Sbjct: 190 -DVLMVAA---LAEPKRRV--FRNIHRYVDT-ETRIIY 220
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 20/145 (13%)
Query: 153 EEHHSNYGEPWAGGRDVF--EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHC 210
+++ + E + G R++ + VL+IGCG G F+ E
Sbjct: 11 SDYYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGR---G-EFLELCKEEGIES 66
Query: 211 --LERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMP 268
++ +E + K ++ D + S H+
Sbjct: 67 IGVDINEDMIKFCEG----------KFNVVKSDAIEYLKSLPDK-YLDGVMISHFVEHLD 115
Query: 269 DKLVWVGLERLASKLRPYDGRIFVS 293
+ ++ L SK++ I +
Sbjct: 116 PERLFELLSLCYSKMKY-SSYIVIE 139
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG 230
FL E + T S L+ G G R+ + L ++ E L+ A + L +G
Sbjct: 69 RFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQA-KTYLGEEG 126
Query: 231 LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290
+ +D S YD+I+ V H+ D+ + L R LRP +G I
Sbjct: 127 KRVRNYFCCGLQDFTPEP-DS---YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP-NGII 181
Query: 291 FVSHNI 296
+ N+
Sbjct: 182 VIKDNM 187
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 32/156 (20%)
Query: 155 HHSNYGEPWAGG----------RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN 204
H Y EP + LA + + L++G G G R+L
Sbjct: 46 HVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAG---YG-GAARFLV 101
Query: 205 PENFHC----LERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK--FGSGVVYDLI 258
F L + GL + + F + YD I
Sbjct: 102 -RKFGVSIDCLNIAPVQNKRN-EEYNNQAGLADN----ITVKYGSFLEIPCEDN-SYDFI 154
Query: 259 YASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVS 293
++ FLH PDK V+ R+ L+P G + ++
Sbjct: 155 WSQDAFLHSPDKLKVFQECARV---LKP-RGVMAIT 186
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 22/143 (15%)
Query: 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLE 212
+ + Y E + +FL + + +LE+GCG G + + F
Sbjct: 18 RGNATAYAERQPRSATLTKFLG---ELPAGAKILELGCGA---G-YQAEAMLAAGFDVDA 70
Query: 213 RDELSLMAAFRYELPSQGLLH--KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDK 270
D S L R + M F + + YD ++A A LH+P
Sbjct: 71 TD------------GSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118
Query: 271 LVWVGLERLASKLRPYDGRIFVS 293
+ L+ + L+P G + S
Sbjct: 119 ELADVLKLIWRALKP-GGLFYAS 140
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 5/137 (3%)
Query: 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL-MAAFRYELPS 228
+ V+++GCG + ++ + E ++ L A R ++
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 229 QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDG 288
+ ++ I + + + YD V H+ + + + L RP
Sbjct: 78 LPEMQRKRISLFQSSLVYRDK-RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP--Q 134
Query: 289 RIFVSH-NIKFCSRLGG 304
+ VS N ++ G
Sbjct: 135 TVIVSTPNKEYNFHYGN 151
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 9/141 (6%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL-MAAFRYELPSQ 229
+ A + V+++GCG + ++ E ++ SL +A R +
Sbjct: 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRL 78
Query: 230 GLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR 289
+ + + + YD V H+ + L +P
Sbjct: 79 PRNQWERLQLIQGALTYQDKRFH-GYDAATVIEVIEHLDLSRLGAFERVLFEFAQP--KI 135
Query: 290 IFVS-----HNIKFCSRLGGE 305
+ V+ +N+KF + G+
Sbjct: 136 VIVTTPNIEYNVKFANLPAGK 156
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 30/153 (19%)
Query: 155 HHSNYGEPWAGG------RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENF 208
H + + A + + + + VL++GCG +G L
Sbjct: 29 HFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCG---IG-KPAVRLA-TAR 83
Query: 209 HC------LERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK--FGSGVVYDLIYA 260
+ R ++ + GL ++ V D F +D ++A
Sbjct: 84 DVRVTGISISRPQV---NQANARATAAGLANR----VTFSYADAMDLPFEDA-SFDAVWA 135
Query: 261 SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293
HMPD+ L +A LRP G + ++
Sbjct: 136 LESLHHMPDRGRA--LREMARVLRP-GGTVAIA 165
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 34/182 (18%)
Query: 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE------NFHCLERDELSLMA 220
+ + + +L IG G + + + + + N +E + A
Sbjct: 38 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI-A 96
Query: 221 AFRYELPSQGLLHKRPIIVRGEDMD-----FTKFGSGVVYDLIYASAVFLHMPDKLVWVG 275
++ + L E + +D I+ + ++ D
Sbjct: 97 KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP--AT 154
Query: 276 LERLASKLRPYDGRIFVSHNI----------KFCSRLGG---------EECTKRLTSLGL 316
L+ S L + ++ + K+ SR ++ T+ L +LGL
Sbjct: 155 LKFFHSLLGT-NAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGL 213
Query: 317 EY 318
+Y
Sbjct: 214 KY 215
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 11/140 (7%)
Query: 160 GEPWAGGRDVFEFLAEASHITP--NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS 217
G D+ + + S L+ G G R+ + + L LE +
Sbjct: 70 GMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT-TDLLEPVKHM 128
Query: 218 LMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLE 277
L A R L M+ YDLI +++ D +
Sbjct: 129 LEEAKRE------LAGMPVGKFILASMETATLPPNT-YDLIVIQWTAIYLTDADFVKFFK 181
Query: 278 RLASKLRPYDGRIFVSHNIK 297
L P +G IF N
Sbjct: 182 HCQQALTP-NGYIFFKENCS 200
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 21/127 (16%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS--LMAAFRYELPS 228
L E + +L++G GT G + +L + + L+ R PS
Sbjct: 31 RVLIEPWATGVDGVILDVGSGT---G-RWTGHLASLGHQIEGLE-PATRLVELARQTHPS 85
Query: 229 QGLLHKRPIIVRGEDMDFTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPY 286
H T + + A +HM + L L +
Sbjct: 86 VTFHH----------GTITDLSDSPKR-WAGLLAWYSLIHMGPGELPDALVALRMAVED- 133
Query: 287 DGRIFVS 293
G + +S
Sbjct: 134 GGGLLMS 140
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 20/178 (11%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQ 229
E+ + + S +++ GCG+ + + Y + ++ L A +
Sbjct: 711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770
Query: 230 GLLHKRPIIVRGEDMDFTKF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDG 288
D +F D+ V HM + E++ S P
Sbjct: 771 NKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP--K 828
Query: 289 RIFVS-----HNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRRS 341
+ VS N + ++ + F +++ FE+ R
Sbjct: 829 LLIVSTPNYEFNTIL-----------QRSTPETQEENNSEPQLPKFRNHDHKFEWTRE 875
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 11/133 (8%)
Query: 162 PWAGGR--DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLM 219
PW GR + L + S + P L GCG V L+ E +L
Sbjct: 46 PWDQGRATPLIVHLVDTSSL-PLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALA 102
Query: 220 AAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERL 279
A S D + ++DLI+ F + ++ + +
Sbjct: 103 KANE-TYGSSPKAEY----FSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSM 157
Query: 280 ASKLRPYDGRIFV 292
L+P DG +
Sbjct: 158 YELLKP-DGELIT 169
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 24/183 (13%)
Query: 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHC--LERDELSLMAAFRYEL 226
++ FL + + VL+ G G + + + + +E +L L A
Sbjct: 11 LYRFLKYCNESNLDKTVLDCGAGG---DLPPLSIFVEDGYKTYGIEISDLQLKKA-ENFS 66
Query: 227 PSQGLLHKRPIIVRGEDMDFTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLR 284
+ D K F +Y+ HM V ++ + L+
Sbjct: 67 RENNFK------LNISKGDIRKLPFKDE-SMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119
Query: 285 PYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE--------YIGKKTHDSLLFNHYEIWF 336
P G ++ R E L LE Y+ + D + ++
Sbjct: 120 P-GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178
Query: 337 EFR 339
E R
Sbjct: 179 EDR 181
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 165 GGRDVFE-FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR 223
G + ++ + +T ++ + +IGCGT + Y+ + ++ +
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQ-ITGIDLFPDFIEIF-N 86
Query: 224 YELPSQGLLHKRPIIVRGEDMDFTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERLAS 281
+ V+G F + DLI++ ++ + G+ +
Sbjct: 87 ENAVKANCADR----VKGITGSMDNLPFQNE-ELDLIWSEGAIYNIGFE---RGMNEWSK 138
Query: 282 KLRPYDGRIFVS 293
L+ G I VS
Sbjct: 139 YLKK-GGFIAVS 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.72 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.68 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.68 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.67 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.67 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.67 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.66 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.66 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.66 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.65 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.65 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.65 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.64 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.64 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.62 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.61 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.61 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.61 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.6 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.59 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.59 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.59 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.59 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.59 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.58 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.57 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.56 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.56 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.56 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.56 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.56 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.55 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.55 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.54 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.53 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.52 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.52 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.52 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.52 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.51 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.51 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.5 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.5 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.5 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.49 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.47 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.47 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.47 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.47 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.47 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.46 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.45 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.45 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.44 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.44 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.44 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.42 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.4 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.39 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.39 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.39 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.38 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.38 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.37 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.37 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.34 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.33 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.32 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.31 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.3 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.3 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.29 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.29 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.29 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.29 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.29 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.28 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.28 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.27 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.27 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.27 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.26 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.26 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.25 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.25 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.25 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.24 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.24 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.24 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.24 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.24 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.24 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.24 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.24 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.23 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.23 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.23 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.22 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.22 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.22 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.21 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.21 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.21 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.2 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.2 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.2 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.2 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.19 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.19 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.19 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.18 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.17 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.17 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.17 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.17 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.17 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.17 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.16 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.15 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.15 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.14 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.13 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.12 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.12 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.11 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.11 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.11 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.1 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.09 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.08 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.07 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.05 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.04 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.04 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.04 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.03 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.03 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.02 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.02 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.01 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.01 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.01 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.0 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.99 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.98 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.98 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.98 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.97 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.97 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.97 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.96 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.96 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.94 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.93 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.93 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.93 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.9 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.89 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.87 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.87 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.87 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.86 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.85 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.85 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.84 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.83 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.83 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.81 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.81 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.79 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.78 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.77 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.75 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.75 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.74 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.73 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.73 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.71 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.69 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.55 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.5 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.44 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.37 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.32 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.3 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.29 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.29 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.27 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.27 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.26 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.22 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.21 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.18 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.16 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.16 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.16 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.15 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.15 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.14 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.13 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.12 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.06 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.05 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.03 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.01 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.0 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.9 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.84 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.84 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.79 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.7 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.68 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.64 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.61 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.57 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.49 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.33 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.3 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.15 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.02 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.01 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.84 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.67 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.32 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.03 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 94.98 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 94.85 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.24 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.8 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 93.74 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.67 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.18 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.49 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.9 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.32 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.17 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 91.05 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.34 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.07 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.03 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 89.77 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.52 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 89.46 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.17 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 88.79 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 88.35 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 88.31 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 88.28 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 88.16 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.11 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 87.88 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 87.77 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 87.36 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 87.21 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.76 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 86.69 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 86.01 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 85.84 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 85.11 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 85.02 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 84.93 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 84.71 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 84.46 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 84.26 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 84.11 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 83.76 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 83.26 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 83.12 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 82.92 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 82.67 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 82.39 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 82.39 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 82.34 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 82.1 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 81.4 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 80.95 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 80.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.55 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 80.53 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 80.43 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=162.21 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=106.7
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|..+..+++.+...++.++++|.++.|.+.++++........++.++.++ +.+++ .+.||+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D---~~~~~-~~~~d~ 142 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD---IRDIA-IENASM 142 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---TTTCC-CCSEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecc---ccccc-cccccc
Confidence 47889999999999999999999987666667777777778877776654432233467777764 44343 347999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------c---------------------cc
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------F---------------------CS 300 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------~---------------------~~ 300 (343)
|+++.++||+++.+...+|++++++||| ||+|++..... + ..
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~Lkp-GG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~ 221 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNP-GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVML 221 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCC
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCC-CcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhccccc
Confidence 9999999999988877899999999999 99999873110 0 11
Q ss_pred CCCHHHHHHHHHhcCCcEEEee
Q 019282 301 RLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 301 ~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
.++.+++.++|+++||+.++..
T Consensus 222 ~~s~~~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 222 TDSVETHKARLHKAGFEHSELW 243 (261)
T ss_dssp CBCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCeEEEE
Confidence 2346788899999999988653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=148.57 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=118.1
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
..+....+.+.+.+.+.++.+|||||||+|.++..+++.+ ... ++++|.++.+.+.+++..... .++.++.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~--v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~ 111 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAH--THGIDICSNIVNMANERVSGN---NKIIFEANDI 111 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCE--EEEEESCHHHHHHHHHTCCSC---TTEEEEECCT
T ss_pred cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCE--EEEEeCCHHHHHHHHHHhhcC---CCeEEEECcc
Confidence 3456677778777888899999999999999999999865 234 555555555555555543322 3666676644
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----c------------ccCCCHHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----F------------CSRLGGEE 306 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----~------------~~~~~~~~ 306 (343)
.+++ + .+++||+|++..+++|++......+|++++++||| ||.+++..... + ...++.++
T Consensus 112 ~~~~-~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (266)
T 3ujc_A 112 LTKE-F-PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKP-TGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEE 188 (266)
T ss_dssp TTCC-C-CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHH
T ss_pred ccCC-C-CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCC-CCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHH
Confidence 4432 2 36799999999999999766667799999999999 99999874211 0 12345899
Q ss_pred HHHHHHhcCCcEEEeeeccccccchhHHhh
Q 019282 307 CTKRLTSLGLEYIGKKTHDSLLFNHYEIWF 336 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~~~~l~~~~~e~w~ 336 (343)
+.+.++++||+++.......-....+..|.
T Consensus 189 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 218 (266)
T 3ujc_A 189 YADILTACNFKNVVSKDLSDYWNQLLEVEH 218 (266)
T ss_dssp HHHHHHHTTCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEEeCCHHHHHHHHHHH
Confidence 999999999999987765544444444554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=149.21 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=118.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
..+.+.+.+.+.+.+.++.+|||||||+|.++..+++..+ ..++++| .++.+.+.+++... .+. ..++.++.++.
T Consensus 45 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD--~s~~~~~~a~~~~~~~~~-~~~~~~~~~d~ 120 (273)
T 3bus_A 45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD-VRVTGIS--ISRPQVNQANARATAAGL-ANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC-CEEEEEE--SCHHHHHHHHHHHHHTTC-TTTEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CEEEEEe--CCHHHHHHHHHHHHhcCC-CcceEEEECcc
Confidence 3566778888888889999999999999999999998652 4444554 44455554444333 333 23566776644
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c-----------------cccCCC
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K-----------------FCSRLG 303 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~-----------------~~~~~~ 303 (343)
.+++ + .+++||+|++..+++|+++... +|++++++||| ||++++.... . ....++
T Consensus 121 ~~~~-~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
T 3bus_A 121 MDLP-F-EDASFDAVWALESLHHMPDRGR--ALREMARVLRP-GGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGG 195 (273)
T ss_dssp TSCC-S-CTTCEEEEEEESCTTTSSCHHH--HHHHHHTTEEE-EEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred ccCC-C-CCCCccEEEEechhhhCCCHHH--HHHHHHHHcCC-CeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCC
Confidence 4433 2 3578999999999999988755 99999999999 9999887311 0 112234
Q ss_pred HHHHHHHHHhcCCcEEEeeeccccccchhHHhhh
Q 019282 304 GEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFE 337 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~~~~~~l~~~~~e~w~~ 337 (343)
.+++.++++++||+++.......-....+..|..
T Consensus 196 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 229 (273)
T 3bus_A 196 IDEYESDVRQAELVVTSTVDISAQARPSLVKTAE 229 (273)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEECcHhHHHHHHHHHH
Confidence 8999999999999999877665544556666664
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=148.33 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=112.6
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
......+.+.+.+.++++.+|||||||+|.++..+++.++ .. ++++|.++.+.+.+++... .+. ..++.+..++.
T Consensus 20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~-~~--v~gvD~s~~~l~~a~~~~~~~~~-~~~v~~~~~d~ 95 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-IT--GTGIDMSSLFTAQAKRRAEELGV-SERVHFIHNDA 95 (256)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CE--EEEEESCHHHHHHHHHHHHHTTC-TTTEEEEESCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC-Ce--EEEEeCCHHHHHHHHHHHHhcCC-CcceEEEECCh
Confidence 3456677777788899999999999999999999998752 34 4555555555555554433 333 23567777644
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------cccCCCHHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------FCSRLGGEE 306 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~~~~~~~~~ 306 (343)
.+++ .+++||+|++..+++|+++... +|++++++||| ||++++....- ....++.++
T Consensus 96 ~~~~---~~~~fD~V~~~~~~~~~~~~~~--~l~~~~r~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (256)
T 1nkv_A 96 AGYV---ANEKCDVAACVGATWIAGGFAG--AEELLAQSLKP-GGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPG 169 (256)
T ss_dssp TTCC---CSSCEEEEEEESCGGGTSSSHH--HHHHHTTSEEE-EEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHH
T ss_pred HhCC---cCCCCCEEEECCChHhcCCHHH--HHHHHHHHcCC-CeEEEEecCcccCCCChHHHHHHHhcccccccCCHHH
Confidence 4443 3678999999999999987655 99999999999 99999874210 012334789
Q ss_pred HHHHHHhcCCcEEEeeeccccccch
Q 019282 307 CTKRLTSLGLEYIGKKTHDSLLFNH 331 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~~~~l~~~~ 331 (343)
+.++++++||+++.....+.-.|..
T Consensus 170 ~~~~l~~aGf~~~~~~~~~~~~~~~ 194 (256)
T 1nkv_A 170 LVGAFDDLGYDVVEMVLADQEGWDR 194 (256)
T ss_dssp HHHHHHTTTBCCCEEEECCHHHHHH
T ss_pred HHHHHHHCCCeeEEEEeCCHHHHHH
Confidence 9999999999988766544433433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-17 Score=149.63 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
++.+++.+.+.+.++++.+|||||||+|.++..+++..+. . ++++|.++.+.+.+++.........++.+..+ |
T Consensus 49 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~--v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~---d 122 (287)
T 1kpg_A 49 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-N--VVGLTLSKNQANHVQQLVANSENLRSKRVLLA---G 122 (287)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-E--EEEEESCHHHHHHHHHHHHTCCCCSCEEEEES---C
T ss_pred HHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-E--EEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC---C
Confidence 4567777888788889999999999999999999966543 4 45555555555555544332222235666655 4
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---------------------------
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--------------------------- 298 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--------------------------- 298 (343)
+.+++ ++||+|++..+++|+++.....+|++++++||| ||++++......
T Consensus 123 ~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (287)
T 1kpg_A 123 WEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEI 199 (287)
T ss_dssp GGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHT
T ss_pred hhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCC-CCEEEEEEecCCCccccccccccccccccchhhhHHhee
Confidence 44343 789999999999999765556699999999999 999998631100
Q ss_pred ---ccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 299 ---CSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 299 ---~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
...++.+++.+.++++||+++......
T Consensus 200 ~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 200 FPGGRLPSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp STTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 011248899999999999999877543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=148.24 Aligned_cols=162 Identities=15% Similarity=0.131 Sum_probs=114.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
+...++.+.+.+.++++.+|||||||+|.++..+++.++ ..++++| .++.+.+.++++.. .+. ..++.+..+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD--~s~~~~~~a~~~~~~~~~-~~~v~~~~~--- 129 (302)
T 3hem_A 57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLT--LSENQYAHDKAMFDEVDS-PRRKEVRIQ--- 129 (302)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEE--CCHHHHHHHHHHHHHSCC-SSCEEEEEC---
T ss_pred HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEE--CCHHHHHHHHHHHHhcCC-CCceEEEEC---
Confidence 456777888888899999999999999999999998765 4444554 45555555554433 333 225666665
Q ss_pred CcCCCCCCCceeEEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEecc---------------------
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNI--------------------- 296 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~--------------------- 296 (343)
|+.++ +++||+|++..+++|+++ .....+++++.++||| ||++++....
T Consensus 130 d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 3hem_A 130 GWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHTITIPDKEEAQELGLTSPMSLLRF 206 (302)
T ss_dssp CGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT-TCEEEEEEEECCCHHHHHHHTCCCCHHHHHH
T ss_pred CHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC-CcEEEEEEEeccCccchhhccccccccccch
Confidence 44433 579999999999999955 4556699999999999 9999987311
Q ss_pred -ccc--------cCCCHHHHHHHHHhcCCcEEEeeeccccccchhHHhhh
Q 019282 297 -KFC--------SRLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFE 337 (343)
Q Consensus 297 -~~~--------~~~~~~~l~~~L~~aGf~~v~~~~~~~l~~~~~e~w~~ 337 (343)
++. .....+++.+.++++||+++.......-.....+.|..
T Consensus 207 ~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~tl~~w~~ 256 (302)
T 3hem_A 207 IKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWAD 256 (302)
T ss_dssp HHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCchhHHHHHHHHHH
Confidence 111 11238899999999999998877654433333445544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=147.91 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=108.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~ 248 (343)
++.+.+.+.+.++.+|||||||+|.++..+++... .++++|.++.+.+.+++... .+. . ++.++.++..+++
T Consensus 26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~v~gvD~s~~~l~~a~~~~~~~~~-~-~v~~~~~d~~~l~- 98 (260)
T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK----KVVAFDLTEDILKVARAFIEGNGH-Q-QVEYVQGDAEQMP- 98 (260)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS----EEEEEESCHHHHHHHHHHHHHTTC-C-SEEEEECCC-CCC-
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC----EEEEEeCCHHHHHHHHHHHHhcCC-C-ceEEEEecHHhCC-
Confidence 34455556778889999999999999999988542 45555555555555554332 232 2 4666666444433
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------cccCCCHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------FCSRLGGEECT 308 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~~~~~~~~~l~ 308 (343)
+ .+++||+|++..+++|+++... +|++++++||| ||++++..... ....+..+++.
T Consensus 99 ~-~~~~fD~V~~~~~l~~~~d~~~--~l~~~~r~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 99 F-TDERFHIVTCRIAAHHFPNPAS--FVSEAYRVLKK-GGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred C-CCCCEEEEEEhhhhHhcCCHHH--HHHHHHHHcCC-CCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHH
Confidence 2 3579999999999999998765 99999999999 99998863110 12234488999
Q ss_pred HHHHhcCCcEEEeeeccccccchhHHhhhh
Q 019282 309 KRLTSLGLEYIGKKTHDSLLFNHYEIWFEF 338 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l~~~~~e~w~~~ 338 (343)
++|+++||+++....... ...|..|+..
T Consensus 175 ~~l~~aGf~~~~~~~~~~--~~~~~~~~~~ 202 (260)
T 1vl5_A 175 KMLEEAGFELEELHCFHK--TFIFEDWCDR 202 (260)
T ss_dssp HHHHHHTCEEEEEEEEEE--EEEHHHHHHH
T ss_pred HHHHHCCCeEEEEEEeec--cCCHHHHHHh
Confidence 999999999887665432 1235666654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=147.45 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=108.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
++..++.+.+.+.+.++.+|||||||+|.++..+++.++ . .++++|.++.+.+.+++... .+. ..++.+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~--~v~gvD~s~~~~~~a~~~~~~~~~-~~~v~~~~~--- 147 (318)
T 2fk8_A 75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-V--NVIGLTLSKNQHARCEQVLASIDT-NRSRQVLLQ--- 147 (318)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-C--EEEEEESCHHHHHHHHHHHHTSCC-SSCEEEEES---
T ss_pred HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-C--EEEEEECCHHHHHHHHHHHHhcCC-CCceEEEEC---
Confidence 456777888878888999999999999999999998653 3 45555555555555554433 233 235666655
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------c----
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------------F---- 298 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------------~---- 298 (343)
|+.+++ ++||+|++..+++|++++....+++++.++||| ||++++..... +
T Consensus 148 d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
T 2fk8_A 148 GWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE 224 (318)
T ss_dssp CGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC-CcEEEEEEeccCCchhhhhccccccccccchhhHHHHh
Confidence 444332 689999999999999766666799999999999 99999863110 0
Q ss_pred ----ccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 299 ----CSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 299 ----~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
....+.+++.+.++++||+++.....
T Consensus 225 ~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 225 IFPGGRLPSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp TSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred cCCCCcCCCHHHHHHHHHhCCCEEEEEEec
Confidence 01124889999999999998876654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=143.08 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..++.+|||||||+|.++..+++..+ .++++|+ ++.+.+.+++... . ++.++.++..++ ..+++||+|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~--s~~~~~~a~~~~~----~-~v~~~~~d~~~~---~~~~~fD~v 107 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEA--SEEAISHAQGRLK----D-GITYIHSRFEDA---QLPRRYDNI 107 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEES--CHHHHHHHHHHSC----S-CEEEEESCGGGC---CCSSCEEEE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeC--CHHHHHHHHHhhh----C-CeEEEEccHHHc---CcCCcccEE
Confidence 34677999999999999999987532 4445554 4555555544321 1 456666543333 346789999
Q ss_pred EEccccccCCchHHHHHHHHHH-hccCCCCcEEEEEeccc----------------------------cccCCCHHHHHH
Q 019282 259 YASAVFLHMPDKLVWVGLERLA-SKLRPYDGRIFVSHNIK----------------------------FCSRLGGEECTK 309 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~-r~LkP~GG~lvi~~~~~----------------------------~~~~~~~~~l~~ 309 (343)
++..+++|++++.. +|++++ ++||| ||++++..... +...++.+++.+
T Consensus 108 ~~~~~l~~~~~~~~--~l~~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (250)
T 2p7i_A 108 VLTHVLEHIDDPVA--LLKRINDDWLAE-GGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLER 184 (250)
T ss_dssp EEESCGGGCSSHHH--HHHHHHHTTEEE-EEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHH
T ss_pred EEhhHHHhhcCHHH--HHHHHHHHhcCC-CCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHH
Confidence 99999999998765 999999 99999 99999874211 112345899999
Q ss_pred HHHhcCCcEEEeeecc
Q 019282 310 RLTSLGLEYIGKKTHD 325 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~ 325 (343)
+++++||+++......
T Consensus 185 ~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 185 DASRAGLQVTYRSGIF 200 (250)
T ss_dssp HHHHTTCEEEEEEEEE
T ss_pred HHHHCCCeEEEEeeeE
Confidence 9999999999876543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-16 Score=138.40 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=104.1
Q ss_pred HHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+...+. ..++.+|||||||+|.++..+++..+...++++|+++..... +++..... . ++.++.++ +.
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~--a~~~~~~~--~-~~~~~~~d---~~ 102 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI--AKNRFRGN--L-KVKYIEAD---YS 102 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH--HHHHTCSC--T-TEEEEESC---TT
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHH--HHHhhccC--C-CEEEEeCc---hh
Confidence 3444554444 567789999999999999999998765666666665544444 44332211 1 56666664 33
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------------------
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------------------ 297 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------------------ 297 (343)
+.+..++||+|++..+++|++++....++++++++||| ||++++.....
T Consensus 103 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (234)
T 3dtn_A 103 KYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKE-SGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAA 181 (234)
T ss_dssp TCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHT
T ss_pred ccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCC-CcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHH
Confidence 33334799999999999999888777799999999999 99999873110
Q ss_pred ------cccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 298 ------FCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 298 ------~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
....++.+++.++|+++||+.++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 182 GYERSKLDKDIEMNQQLNWLKEAGFRDVSCIY 213 (234)
T ss_dssp TC----CCCCCBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcccccccCHHHHHHHHHHcCCCceeeee
Confidence 01123478889999999999987653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=141.92 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=104.7
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|.++..+++. +..++++|.++.+...+++.. .+.+..+ ++...+.+++||+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~---d~~~~~~~~~fD~ 105 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRRL-------GRPVRTM---LFHQLDAIDAYDA 105 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHH-------TSCCEEC---CGGGCCCCSCEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc----CCeEEEECCCHHHHHHHHHhc-------CCceEEe---eeccCCCCCcEEE
Confidence 4667889999999999999999884 334555555555555554432 1222333 3333335789999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------cccCCCHHHHHHHHHhcC-CcEEEeeeccc
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------FCSRLGGEECTKRLTSLG-LEYIGKKTHDS 326 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------~~~~~~~~~l~~~L~~aG-f~~v~~~~~~~ 326 (343)
|++..+++|++......+|++++++||| ||++++..... ....++.+++.++++++| |+++.......
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 106 VWAHACLLHVPRDELADVLKLIWRALKP-GGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEG 184 (211)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred EEecCchhhcCHHHHHHHHHHHHHhcCC-CcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence 9999999999976767799999999999 99999874211 122346999999999999 99998775443
Q ss_pred ccc-chhHHhhhhhcc
Q 019282 327 LLF-NHYEIWFEFRRS 341 (343)
Q Consensus 327 l~~-~~~e~w~~~~~~ 341 (343)
..+ ...+.|+.+.+.
T Consensus 185 ~~~~~~~~~wl~~~~~ 200 (211)
T 3e23_A 185 KGFDQELAQFLHVSVR 200 (211)
T ss_dssp ECTTSCEEEEEEEEEE
T ss_pred CCCCCCCceEEEEEEe
Confidence 322 334567665543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=146.60 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhc----CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEe
Q 019282 166 GRDVFEFLAEAS----HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVR 240 (343)
Q Consensus 166 ~~~~~~~l~~~~----~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~ 240 (343)
.++..+.+.+.+ .+.++.+|||||||+|.++..+++.++ .. ++++|.++.+.+.+++... .+. ..++.++.
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~--v~gvD~s~~~~~~a~~~~~~~~~-~~~~~~~~ 138 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-VS--IDCLNIAPVQNKRNEEYNNQAGL-ADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CE--EEEEESCHHHHHHHHHHHHHHTC-TTTEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC-CE--EEEEeCCHHHHHHHHHHHHhcCC-CcceEEEE
Confidence 455667777777 888999999999999999999998653 34 4445555555554444332 333 23566776
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------cccCCC
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------FCSRLG 303 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~~~~~~ 303 (343)
++..+++ + .+++||+|++..+++|+++... +|++++++||| ||++++..... .....+
T Consensus 139 ~d~~~~~-~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (297)
T 2o57_A 139 GSFLEIP-C-EDNSYDFIWSQDAFLHSPDKLK--VFQECARVLKP-RGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGS 213 (297)
T ss_dssp CCTTSCS-S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCC
T ss_pred cCcccCC-C-CCCCEeEEEecchhhhcCCHHH--HHHHHHHHcCC-CeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCC
Confidence 6444433 2 3578999999999999998654 99999999999 99999873210 001124
Q ss_pred HHHHHHHHHhcCCcEEEeeecc
Q 019282 304 GEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
.+++.++++++||+++......
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHHHCCCeEEEEEECc
Confidence 8889999999999998876543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=143.24 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=100.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-CCCCCCceeE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-KFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-~~~~~~~fDl 257 (343)
++++.+|||||||+|.++..+++. +..++++|.+..+.+.+++. +.++.++..++. .+ .+++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-~~~~fD~ 104 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-PDKYLDG 104 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH----TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-CTTCBSE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC----CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-CCCCeeE
Confidence 567789999999999999999885 33466667777777766542 344444333321 23 3679999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------cccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------FCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
|++..+++|++++....++++++++||| ||++++..... ....+..+++.++++++||+++....
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKY-SSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCT-TCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCC-CcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999988667799999999999 99999874211 12334589999999999999998887
Q ss_pred cccc
Q 019282 324 HDSL 327 (343)
Q Consensus 324 ~~~l 327 (343)
..++
T Consensus 184 ~~~~ 187 (240)
T 3dli_A 184 FEEC 187 (240)
T ss_dssp ECCC
T ss_pred eccC
Confidence 6643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=140.27 Aligned_cols=149 Identities=10% Similarity=0.088 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC-----------CCCCCcE
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG-----------LLHKRPI 237 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~-----------~~~~~~~ 237 (343)
+.+.+ ..+.++++.+|||+|||+|..+..+++. ++.++++|.++.|.+.+++..... ....++.
T Consensus 11 l~~~~-~~l~~~~~~~vLD~GCG~G~~~~~la~~----g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 11 LQQYW-SSLNVVPGARVLVPLCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp HHHHH-HHHCCCTTCEEEETTTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHH-HhcccCCCCEEEEeCCCCcHhHHHHHHC----CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 33443 3456778899999999999999999984 445666666666666665432210 0123566
Q ss_pred EEecccCCcCCCCCC-CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEE-EEecccc----c--cCCCHHHHHH
Q 019282 238 IVRGEDMDFTKFGSG-VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF-VSHNIKF----C--SRLGGEECTK 309 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~-~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv-i~~~~~~----~--~~~~~~~l~~ 309 (343)
++.++..+++ + .+ ++||+|++..+++|++......++++++++||| ||+++ ++...+. . ..+..+++.+
T Consensus 86 ~~~~d~~~l~-~-~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp-gG~~~l~~~~~~~~~~~~~~~~~~~~el~~ 162 (203)
T 1pjz_A 86 IWCGDFFALT-A-RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLITLEYDQALLEGPPFSVPQTWLHR 162 (203)
T ss_dssp EEEECCSSST-H-HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEEEESSCSSSSSSCCCCCCHHHHHH
T ss_pred EEECccccCC-c-ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCccccCCCCCCCCHHHHHH
Confidence 7776444333 1 12 689999999999999887777799999999999 99843 4322110 0 1134899999
Q ss_pred HHHhcCCcEEEeeeccc
Q 019282 310 RLTSLGLEYIGKKTHDS 326 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~~ 326 (343)
.+++ ||+++.....+.
T Consensus 163 ~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 163 VMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp TSCS-SEEEEEEEESSC
T ss_pred HhcC-CcEEEEeccccc
Confidence 9988 999887665543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=139.15 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+.+.+.+....+++ +|||||||+|.++..+++. +...++++|+ ++.+.+.+++... .+. ..++.++.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~--s~~~~~~a~~~~~~~~~-~~~~~~~~~d~~ 103 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDF--SKHMNEIALKNIADANL-NDRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEES--CHHHHHHHHHHHHHTTC-TTTEEEEECBTT
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEEC--CHHHHHHHHHHHHhccc-cCceEEEEcCHH
Confidence 44566667766777777 9999999999999999986 3334445544 4455554444433 233 335677766544
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cc
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FC 299 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~ 299 (343)
+++ + .+++||+|++..+++|+++... ++++++++||| ||.+++..... ..
T Consensus 104 ~~~-~-~~~~~D~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (219)
T 3dlc_A 104 NIP-I-EDNYADLIVSRGSVFFWEDVAT--AFREIYRILKS-GGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNI 178 (219)
T ss_dssp BCS-S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred HCC-C-CcccccEEEECchHhhccCHHH--HHHHHHHhCCC-CCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhcc
Confidence 433 2 3579999999999999987665 99999999999 99999873110 01
Q ss_pred cCCCHHHHHHHHHhcCCcEEEeee
Q 019282 300 SRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 300 ~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
..++.+++.++|+++||+.+....
T Consensus 179 ~~~~~~~~~~~l~~aGf~~v~~~~ 202 (219)
T 3dlc_A 179 SQENVERFQNVLDEIGISSYEIIL 202 (219)
T ss_dssp SHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEe
Confidence 112268999999999999887664
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=146.55 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
.....+.+.+.+. +.++.+|||||||+|.++..+++.+. .. ++++|.++.+.+.++++.. .++ ..++.++.++.
T Consensus 101 ~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~--v~gvD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~ 176 (312)
T 3vc1_A 101 ESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG-SR--VEGVTLSAAQADFGNRRARELRI-DDHVRSRVCNM 176 (312)
T ss_dssp HHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC-CE--EEEEESCHHHHHHHHHHHHHTTC-TTTEEEEECCT
T ss_pred HHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC-CE--EEEEeCCHHHHHHHHHHHHHcCC-CCceEEEECCh
Confidence 3444566776676 88899999999999999999998652 34 5555555555555554433 333 33677777654
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------------------ccCCCHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------CSRLGGE 305 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------~~~~~~~ 305 (343)
.+++ + .+++||+|++..+++|++ ...+|++++++||| ||++++...... ...+..+
T Consensus 177 ~~~~-~-~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 250 (312)
T 3vc1_A 177 LDTP-F-DKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV-GGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRR 250 (312)
T ss_dssp TSCC-C-CTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE-EEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHH
T ss_pred hcCC-C-CCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC-CcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHH
Confidence 4443 2 357999999999999994 34599999999999 999988631100 1123488
Q ss_pred HHHHHHHhcCCcEEEeeeccccccchhHHhh
Q 019282 306 ECTKRLTSLGLEYIGKKTHDSLLFNHYEIWF 336 (343)
Q Consensus 306 ~l~~~L~~aGf~~v~~~~~~~l~~~~~e~w~ 336 (343)
++.++++++||+++..........+.|..++
T Consensus 251 ~~~~~l~~aGf~~~~~~~~~~~~~~~w~~~~ 281 (312)
T 3vc1_A 251 EYLRAMADNRLVPHTIVDLTPDTLPYWELRA 281 (312)
T ss_dssp HHHHHHHTTTEEEEEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999988876544444444443
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=139.48 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=106.2
Q ss_pred HHHHHHHHHhc-CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 167 RDVFEFLAEAS-HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 167 ~~~~~~l~~~~-~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
......+...+ .++++.+|||||||+|.++..+++..+. .++++|+++ .+.+.++++.. .+. .+++.++.++..
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~--~~~~~a~~~~~~~~~-~~~~~~~~~d~~ 106 (257)
T 3f4k_A 31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFP--DFIEIFNENAVKANC-ADRVKGITGSMD 106 (257)
T ss_dssp HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCH--HHHHHHHHHHHHTTC-TTTEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCH--HHHHHHHHHHHHcCC-CCceEEEECChh
Confidence 34444454444 6788899999999999999999997653 555555555 44444444433 333 335777776544
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c-------------cccCCCHHHHH
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K-------------FCSRLGGEECT 308 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~-------------~~~~~~~~~l~ 308 (343)
+++ + .+++||+|++..+++|+ +.. .++++++++||| ||++++.... . +....+.+++.
T Consensus 107 ~~~-~-~~~~fD~v~~~~~l~~~-~~~--~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (257)
T 3f4k_A 107 NLP-F-QNEELDLIWSEGAIYNI-GFE--RGMNEWSKYLKK-GGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCI 180 (257)
T ss_dssp SCS-S-CTTCEEEEEEESCSCCC-CHH--HHHHHHHTTEEE-EEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHH
T ss_pred hCC-C-CCCCEEEEEecChHhhc-CHH--HHHHHHHHHcCC-CcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHH
Confidence 443 2 35799999999999999 443 489999999999 9999987421 0 01122478899
Q ss_pred HHHHhcCCcEEEeeecccccc
Q 019282 309 KRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l~~ 329 (343)
+.++++||+++.......-.|
T Consensus 181 ~~l~~aGf~~v~~~~~~~~~w 201 (257)
T 3f4k_A 181 DKMERAGYTPTAHFILPENCW 201 (257)
T ss_dssp HHHHHTTEEEEEEEECCGGGT
T ss_pred HHHHHCCCeEEEEEECChhhH
Confidence 999999999998765544444
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=141.83 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
....+.+.+...++.+|||||||+|.++..+++.. ...++++|+++ .+.+.+++..... .++.++.++..+++
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~--~~~~~a~~~~~~~---~~~~~~~~d~~~~~- 153 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVK--HMLEEAKRELAGM---PVGKFILASMETAT- 153 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCH--HHHHHHHHHTTTS---SEEEEEESCGGGCC-
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCH--HHHHHHHHHhccC---CceEEEEccHHHCC-
Confidence 34455555667788999999999999999998865 23455555555 4444444432211 24556665433332
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------cccCCCHHHHHHHHHhcCCc
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------FCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~~~~~~~~~l~~~L~~aGf~ 317 (343)
+ .+++||+|++..+++|+++.....+|++++++||| ||++++..... ....++.+++.++++++||+
T Consensus 154 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 231 (254)
T 1xtp_A 154 L-PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTP-NGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231 (254)
T ss_dssp C-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred C-CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCE
Confidence 2 35789999999999999876667799999999999 99999875211 11123489999999999999
Q ss_pred EEEeeeccccccchh
Q 019282 318 YIGKKTHDSLLFNHY 332 (343)
Q Consensus 318 ~v~~~~~~~l~~~~~ 332 (343)
++.......++...+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (254)
T 1xtp_A 232 VVKEAFQEEWPTDLF 246 (254)
T ss_dssp EEEEEECTTCCTTSC
T ss_pred EEEeeecCCCCchhh
Confidence 998877665554444
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=143.13 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=101.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
.+...+..+ +.+|||||||+|.++..+++. +..++++|.++.+.+.+++.........++.++.++..+++.+ .
T Consensus 60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 133 (285)
T 4htf_A 60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER----GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-L 133 (285)
T ss_dssp HHHHHTCSS-CCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-C
T ss_pred HHHHhcCCC-CCEEEEeCCcchHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-c
Confidence 344444433 679999999999999999984 3345555555555555555433222223566776655544423 4
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------------------cccCC
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------------------FCSRL 302 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------------------~~~~~ 302 (343)
+++||+|++..+++|+++... +|++++++||| ||++++..... ....+
T Consensus 134 ~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVADPRS--VLQTLWSVLRP-GGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp SSCEEEEEEESCGGGCSCHHH--HHHHHHHTEEE-EEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CCCceEEEECchhhcccCHHH--HHHHHHHHcCC-CeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCC
Confidence 679999999999999988765 99999999999 99999873110 01223
Q ss_pred CHHHHHHHHHhcCCcEEEeeec
Q 019282 303 GGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+++++.++|+++||+++.....
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHCCCceeeeeeE
Confidence 4899999999999999976653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=135.87 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=98.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .++.++.++..+++ ..++||+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~---~~~~fD~ 109 (220)
T 3hnr_A 42 VNKSFGNVLEFGVGTGNLTNKLLLA----GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE---VPTSIDT 109 (220)
T ss_dssp HHTCCSEEEEECCTTSHHHHHHHHT----TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC---CCSCCSE
T ss_pred hccCCCeEEEeCCCCCHHHHHHHhC----CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC---CCCCeEE
Confidence 3447889999999999999999884 4456666666666666654322 24556655433333 3379999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------c---------ccCCCHHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------F---------CSRLGGEECTKRL 311 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~---------~~~~~~~~l~~~L 311 (343)
|++..+++|++++....+|++++++||| ||.+++..... + ...++.+++.+++
T Consensus 110 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNK-GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCT-TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred EEECcchhcCChHHHHHHHHHHHHhcCC-CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 9999999999998777799999999999 99999873110 0 0112478999999
Q ss_pred HhcCCcEEEeeec
Q 019282 312 TSLGLEYIGKKTH 324 (343)
Q Consensus 312 ~~aGf~~v~~~~~ 324 (343)
+++||+++.....
T Consensus 189 ~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 189 ENNGFHVTFTRLN 201 (220)
T ss_dssp HHTTEEEEEEECS
T ss_pred HHCCCEEEEeecc
Confidence 9999998876653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=136.82 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.....+.+.+.+.++.+|||||||+|.++..+++.++...++++|+++.....+ ++. ..++.+..++..+++
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a--~~~------~~~~~~~~~d~~~~~ 91 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA--ADR------LPNTNFGKADLATWK 91 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHH--HHH------STTSEEEECCTTTCC
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHh------CCCcEEEECChhhcC
Confidence 344556666677888999999999999999999987666777777666554444 332 124566665444433
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------c-----------c
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------F-----------C 299 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~-----------~ 299 (343)
.+++||+|++..+++|+++... +|++++++||| ||++++..... + .
T Consensus 92 ---~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T 2p35_A 92 ---PAQKADLLYANAVFQWVPDHLA--VLSQLMDQLES-GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRK 165 (259)
T ss_dssp ---CSSCEEEEEEESCGGGSTTHHH--HHHHHGGGEEE-EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------C
T ss_pred ---ccCCcCEEEEeCchhhCCCHHH--HHHHHHHhcCC-CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhcccccccc
Confidence 4678999999999999987655 99999999999 99999874211 0 1
Q ss_pred cCCCHHHHHHHHHhcCCcEEEee
Q 019282 300 SRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 300 ~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+..+++.++|+++||++....
T Consensus 166 ~~~~~~~~~~~l~~aGf~v~~~~ 188 (259)
T 2p35_A 166 PLPPPSDYFNALSPKSSRVDVWH 188 (259)
T ss_dssp CCCCHHHHHHHHGGGEEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCceEEEE
Confidence 12348999999999999754433
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=139.11 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=102.2
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
...+++ .+|||||||+|.++..+++ .+..++++|.++.+.+.+++.........++.++.+ |+.++..+++|
T Consensus 62 ~~~~~~-~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~f 133 (235)
T 3lcc_A 62 TSSLPL-GRALVPGCGGGHDVVAMAS----PERFVVGLDISESALAKANETYGSSPKAEYFSFVKE---DVFTWRPTELF 133 (235)
T ss_dssp TTCSCC-EEEEEETCTTCHHHHHHCB----TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECC---CTTTCCCSSCE
T ss_pred hcCCCC-CCEEEeCCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEEC---chhcCCCCCCe
Confidence 344544 4999999999999998876 456677777777777766654332111224566665 44444456699
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc------ccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------CSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
|+|++..+++|+++.....++++++++||| ||++++...... ...+..+++.++++++||+++......
T Consensus 134 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 134 DLIFDYVFFCAIEPEMRPAWAKSMYELLKP-DGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp EEEEEESSTTTSCGGGHHHHHHHHHHHEEE-EEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred eEEEEChhhhcCCHHHHHHHHHHHHHHCCC-CcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 999999999999966667799999999999 999988632111 112458999999999999998876543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=140.39 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=104.7
Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
.....+...+. ++++.+|||||||+|.++..+++. +...++++|+++ .+.+.+++... .+. .+++.++.++..+
T Consensus 32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~--~~~~~a~~~~~~~~~-~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLS--GFIDIFNRNARQSGL-QNRVTGIVGSMDD 107 (267)
T ss_dssp HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCH--HHHHHHHHHHHHTTC-TTTEEEEECCTTS
T ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCH--HHHHHHHHHHHHcCC-CcCcEEEEcChhh
Confidence 34444444444 778899999999999999999986 334555555554 55554454433 333 3357777764444
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c-------------cccCCCHHHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K-------------FCSRLGGEECTK 309 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~-------------~~~~~~~~~l~~ 309 (343)
++ + .+++||+|++..+++|+ +.. .++++++++||| ||++++.... . +....+.+++.+
T Consensus 108 ~~-~-~~~~fD~i~~~~~~~~~-~~~--~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (267)
T 3kkz_A 108 LP-F-RNEELDLIWSEGAIYNI-GFE--RGLNEWRKYLKK-GGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVA 181 (267)
T ss_dssp CC-C-CTTCEEEEEESSCGGGT-CHH--HHHHHHGGGEEE-EEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHH
T ss_pred CC-C-CCCCEEEEEEcCCceec-CHH--HHHHHHHHHcCC-CCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence 33 2 36799999999999999 443 489999999999 9999987421 0 011123788999
Q ss_pred HHHhcCCcEEEeeecccccc
Q 019282 310 RLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~~~l~~ 329 (343)
.++++||+++.......-.|
T Consensus 182 ~l~~aGf~~v~~~~~~~~~w 201 (267)
T 3kkz_A 182 KIHKAGYLPVATFILPENCW 201 (267)
T ss_dssp HHHHTTEEEEEEEECCGGGT
T ss_pred HHHHCCCEEEEEEECCHhHH
Confidence 99999999998776554444
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=135.15 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=103.5
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCC---CCcEEEe
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLH---KRPIIVR 240 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~---~~~~~~~ 240 (343)
.....++.+.+.+...++.+|||||||+|.++..+++..+...++++|+++.....+ ++... .++.. .++.++.
T Consensus 13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a--~~~~~~~~~~~~~~~~v~~~~ 90 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA--KDRLKIDRLPEMQRKRISLFQ 90 (219)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHH--HHHHTGGGSCHHHHTTEEEEE
T ss_pred chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHH--HHHHHhhccccccCcceEEEe
Confidence 344455666555555678899999999999999999866545666666665554444 43322 22211 1456666
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc-----------------cCCC
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC-----------------SRLG 303 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~-----------------~~~~ 303 (343)
++..... . .+++||+|++..+++|++++....++++++++||| ||.++.+....+. ..++
T Consensus 91 ~d~~~~~-~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3jwg_A 91 SSLVYRD-K-RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWT 167 (219)
T ss_dssp CCSSSCC-G-GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC-SEEEEEEEBGGGGGCCCCT-----GGGCCTTSBC
T ss_pred Ccccccc-c-ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC-CEEEEEccchhhhhhhcccCcccccccCceeeec
Confidence 5332221 1 35789999999999999988767799999999999 9977776433321 1124
Q ss_pred HHHHH----HHHHhcCCcEEEee
Q 019282 304 GEECT----KRLTSLGLEYIGKK 322 (343)
Q Consensus 304 ~~~l~----~~L~~aGf~~v~~~ 322 (343)
.+++. +.++++||++....
T Consensus 168 ~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 168 RKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCcEEEEEe
Confidence 77777 77889999876554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=133.49 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=104.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
.+.+.+.+.++.+|||||||+|.++..+++.. +...++++|+++.....+ ++... .+.. ++.++.++..+++ +
T Consensus 28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a--~~~~~~~~~~--~~~~~~~d~~~~~-~ 102 (219)
T 3dh0_A 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYA--WEKVNKLGLK--NVEVLKSEENKIP-L 102 (219)
T ss_dssp HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHH--HHHHHHHTCT--TEEEEECBTTBCS-S
T ss_pred HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH--HHHHHHcCCC--cEEEEecccccCC-C
Confidence 34445578889999999999999999999876 444556666655544444 43322 2322 4666666444433 2
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--------ccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--------KFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--------~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
.+++||+|++..+++|+++... ++++++++||| ||.+++.... .....+..+++.+.++++||+++..
T Consensus 103 -~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 103 -PDNTVDFIFMAFTFHELSEPLK--FLEELKRVAKP-FAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp -CSSCEEEEEEESCGGGCSSHHH--HHHHHHHHEEE-EEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred -CCCCeeEEEeehhhhhcCCHHH--HHHHHHHHhCC-CeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 3578999999999999987655 99999999999 9999987421 2233456899999999999998876
Q ss_pred eec
Q 019282 322 KTH 324 (343)
Q Consensus 322 ~~~ 324 (343)
...
T Consensus 179 ~~~ 181 (219)
T 3dh0_A 179 VEV 181 (219)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-16 Score=136.28 Aligned_cols=150 Identities=16% Similarity=0.085 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCC---CCcEEEecc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLH---KRPIIVRGE 242 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~---~~~~~~~~~ 242 (343)
+..++.+.+.+...++.+|||||||+|.++..+++..+...++++|+++.....+ ++... .+... .++.++.++
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a--~~~~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIA--QERLDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHH--HHHHTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHH--HHHHHHhcCCcccCcceEEEeCC
Confidence 3455556555555678899999999999999999865545666666665554444 43322 22210 146666653
Q ss_pred cCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-----------------ccCCCH
Q 019282 243 DMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-----------------CSRLGG 304 (343)
Q Consensus 243 ~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-----------------~~~~~~ 304 (343)
+.... ..++||+|++..+++|++++....++++++++||| ||.++++....+ ...+++
T Consensus 93 ---~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (217)
T 3jwh_A 93 ---LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTR 168 (217)
T ss_dssp ---TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC-SEEEEEEEBHHHHHHTC-----------CCSCBCH
T ss_pred ---cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC-CEEEEEccCcccchhhcccccccccccccccccCH
Confidence 32222 24689999999999999988777799999999999 998877643222 111357
Q ss_pred HHHH----HHHHhcCCcEEEee
Q 019282 305 EECT----KRLTSLGLEYIGKK 322 (343)
Q Consensus 305 ~~l~----~~L~~aGf~~v~~~ 322 (343)
+++. +.++++||+++...
T Consensus 169 ~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 169 SQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp HHHHHHHHHHHHHSSEEEEECC
T ss_pred HHHHHHHHHHHHHcCceEEEEe
Confidence 7777 78889999886653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=137.56 Aligned_cols=156 Identities=16% Similarity=0.297 Sum_probs=108.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~ 248 (343)
...+.+.+.++++.+|||||||+|.++..+++.. ..++++|+ ++.+.+.+++... .+. .++.++.++..+++
T Consensus 10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~--s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~- 82 (239)
T 1xxl_A 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDA--TKEMVEVASSFAQEKGV--ENVRFQQGTAESLP- 82 (239)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEES--CHHHHHHHHHHHHHHTC--CSEEEEECBTTBCC-
T ss_pred cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEEC--CHHHHHHHHHHHHHcCC--CCeEEEecccccCC-
Confidence 3445556788999999999999999999998754 24445554 4455554444322 222 14566666444433
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------cccCCCHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------FCSRLGGEECT 308 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~~~~~~~~~l~ 308 (343)
+ .+++||+|++..+++|+++... +|++++++||| ||++++..... ....+..+++.
T Consensus 83 ~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 83 F-PDDSFDIITCRYAAHHFSDVRK--AVREVARVLKQ-DGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred C-CCCcEEEEEECCchhhccCHHH--HHHHHHHHcCC-CcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHH
Confidence 2 3578999999999999988765 99999999999 99999863211 12234589999
Q ss_pred HHHHhcCCcEEEeeeccccccchhHHhhhh
Q 019282 309 KRLTSLGLEYIGKKTHDSLLFNHYEIWFEF 338 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l~~~~~e~w~~~ 338 (343)
++|+++||+++....... .-.|..|+..
T Consensus 159 ~ll~~aGf~~~~~~~~~~--~~~~~~w~~~ 186 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKWNL--PIQYDSWIKR 186 (239)
T ss_dssp HHHHHTTEEEEEEEEEEE--EEEHHHHHHH
T ss_pred HHHHHCCCcEEEEEeecC--ccCHHHHHHH
Confidence 999999999887665421 1235666644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=137.71 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=101.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
...+.+.+...++.+|||||||+|.++..+++... ..++++|+ ++.+.+.+++... ..++.++.++..+++ +
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~--s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~ 104 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDL--SERMLTEAKRKTT----SPVVCYEQKAIEDIA-I 104 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEES--CHHHHHHHHHHCC----CTTEEEEECCGGGCC-C
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEEC--CHHHHHHHHHhhc----cCCeEEEEcchhhCC-C
Confidence 34455555666789999999999999999988532 24445554 4455554444322 235666766444433 2
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-------------------------------
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF------------------------------- 298 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~------------------------------- 298 (343)
.+++||+|++..+++|+++... +|++++++||| ||.+++......
T Consensus 105 -~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (253)
T 3g5l_A 105 -EPDAYNVVLSSLALHYIASFDD--ICKKVYINLKS-SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMR 180 (253)
T ss_dssp -CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEE
T ss_pred -CCCCeEEEEEchhhhhhhhHHH--HHHHHHHHcCC-CcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceE
Confidence 3679999999999999987655 99999999999 999998621110
Q ss_pred ----------ccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 299 ----------CSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 299 ----------~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
...++.+++.++|+++||+++.....
T Consensus 181 ~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 181 TSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred EEeeccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 00126899999999999999987754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=133.33 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=98.6
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
+.+|||||||+|.++..+++. +..++++|.++.+.+.+++.. .++.++.++..+++ + .+++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~-~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS-D-SPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT----TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG-G-SCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc-c-CCCCeEEEEeh
Confidence 779999999999999999884 334566666666666555421 14566665444433 2 35799999999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------cccCCCHHHHHHHHHhcCCcEEEeeeccc
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------FCSRLGGEECTKRLTSLGLEYIGKKTHDS 326 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------~~~~~~~~~l~~~L~~aGf~~v~~~~~~~ 326 (343)
.+++|++......+|++++++||| ||.+++..... ....++.+++.++++++||+++.......
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVED-GGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEE-EEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCC-CcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 999999865566699999999999 99999874211 11224589999999999999998887655
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=133.77 Aligned_cols=134 Identities=21% Similarity=0.168 Sum_probs=98.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|.++..+++. +..++++|.++.+.+.+++ .+. .++.++.++..++ ..+++||+
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~---~~~--~~~~~~~~d~~~~---~~~~~~D~ 110 (218)
T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGL----ADRVTALDGSAEMIAEAGR---HGL--DNVEFRQQDLFDW---TPDRQWDA 110 (218)
T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHGG---GCC--TTEEEEECCTTSC---CCSSCEEE
T ss_pred cCCCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHh---cCC--CCeEEEecccccC---CCCCceeE
Confidence 4777889999999999999999985 3345555555566665554 222 2566666644433 35689999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------------c--------------ccCCCHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------------F--------------CSRLGGEECT 308 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------------~--------------~~~~~~~~l~ 308 (343)
|++..+++|++++....+|++++++||| ||.+++..... . ...++++++.
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAP-GGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCC-CeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHH
Confidence 9999999999998667799999999999 99998873210 0 0123589999
Q ss_pred HHHHhcCCcEEEeeec
Q 019282 309 KRLTSLGLEYIGKKTH 324 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~ 324 (343)
++++++||++......
T Consensus 190 ~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCEEEeeecc
Confidence 9999999996655543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=134.23 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+... ++++.+|||||||+|.++..+++. +..++++|.++.+.+.+++.. ...++.++.++..+++
T Consensus 42 ~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 42 TIIPFFEQY--VKKEAEVLDVGCGDGYGTYKLSRT----GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP 111 (242)
T ss_dssp THHHHHHHH--SCTTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS
T ss_pred HHHHHHHHH--cCCCCeEEEEcCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC
Confidence 455666544 457889999999999999999984 334555565666666555432 2235667766544443
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------cccCCCHHHHHHH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------FCSRLGGEECTKR 310 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~~~~~~~~~l~~~ 310 (343)
+ .+++||+|++..+++|+++... ++++++++|+| ||++++..... ....+.++++.++
T Consensus 112 -~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (242)
T 3l8d_A 112 -F-ENEQFEAIMAINSLEWTEEPLR--ALNEIKRVLKS-DGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQL 186 (242)
T ss_dssp -S-CTTCEEEEEEESCTTSSSCHHH--HHHHHHHHEEE-EEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHH
T ss_pred -C-CCCCccEEEEcChHhhccCHHH--HHHHHHHHhCC-CeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHH
Confidence 2 3679999999999999988765 99999999999 99999874111 1122458899999
Q ss_pred HHhcCCcEEEeee
Q 019282 311 LTSLGLEYIGKKT 323 (343)
Q Consensus 311 L~~aGf~~v~~~~ 323 (343)
++++||+++....
T Consensus 187 l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 187 VKEQGFKVVDGIG 199 (242)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCEEEEeec
Confidence 9999999998663
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=138.33 Aligned_cols=147 Identities=21% Similarity=0.330 Sum_probs=102.0
Q ss_pred HHHHHHHHh-cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEA-SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~-~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
..++.+.+. ..+.++.+|||||||+|.++..+++.++. ..++++|+++ .+.+.+++.... . ..++.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~--~~~~~a~~~~~~-~-~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE--TLLAEARELFRL-L-PYDSEFLEGDATE 83 (284)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH--HHHHHHHHHHHS-S-SSEEEEEESCTTT
T ss_pred HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHh-c-CCceEEEEcchhh
Confidence 344445444 36778899999999999999999987763 4555555555 444444443221 1 1156666664443
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc------cc---------------------
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI------KF--------------------- 298 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~------~~--------------------- 298 (343)
++.+++||+|++..+++|+++... ++++++++||| ||++++.... .+
T Consensus 84 ---~~~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (284)
T 3gu3_A 84 ---IELNDKYDIAICHAFLLHMTTPET--MLQKMIHSVKK-GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFE 157 (284)
T ss_dssp ---CCCSSCEEEEEEESCGGGCSSHHH--HHHHHHHTEEE-EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHH
T ss_pred ---cCcCCCeeEEEECChhhcCCCHHH--HHHHHHHHcCC-CCEEEEEecchhcccccceecCcchhhccchHHHHHHHH
Confidence 334579999999999999988765 99999999999 9999987432 00
Q ss_pred ------cc-CCCHHHHHHHHHhcCCcEEEeeec
Q 019282 299 ------CS-RLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 299 ------~~-~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.. ....+++.++|+++||+.+.....
T Consensus 158 ~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 158 SDTQRNGKDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTCCCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHhhhhcccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 00 111567889999999999977543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-15 Score=135.35 Aligned_cols=153 Identities=10% Similarity=-0.043 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC----------C------C
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ----------G------L 231 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~----------~------~ 231 (343)
.+.+.+.......++.+|||+|||+|..+..|++ .++.|+++|.++.+.+.+++.... + .
T Consensus 55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~----~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T 2gb4_A 55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFAD----RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130 (252)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHH----TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHhccccccccccccccccccccc
Confidence 3444444333446788999999999999999998 466788888888888776543210 0 0
Q ss_pred CCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE-Eecccc----cc--CCCH
Q 019282 232 LHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV-SHNIKF----CS--RLGG 304 (343)
Q Consensus 232 ~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi-~~~~~~----~~--~~~~ 304 (343)
...++.++.++..+++ ....++||+|++..+++|++......+++++.++||| ||++++ +...+. .. .+.+
T Consensus 131 ~~~~i~~~~~D~~~l~-~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp-GG~l~l~~~~~~~~~~~g~~~~~~~ 208 (252)
T 2gb4_A 131 SSGSISLYCCSIFDLP-RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK-EFQYLVAVLSYDPTKHAGPPFYVPS 208 (252)
T ss_dssp TTSSEEEEESCTTTGG-GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE-EEEEEEEEEECCTTSCCCSSCCCCH
T ss_pred CCCceEEEECccccCC-cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC-CeEEEEEEEecCCccCCCCCCCCCH
Confidence 1235677776444443 1112799999999999999887777799999999999 999964 322110 01 1458
Q ss_pred HHHHHHHHhcCCcEEEeeecccc
Q 019282 305 EECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
+++.+.+.. +|+++.....+.+
T Consensus 209 ~el~~~l~~-~f~v~~~~~~~~~ 230 (252)
T 2gb4_A 209 AELKRLFGT-KCSMQCLEEVDAL 230 (252)
T ss_dssp HHHHHHHTT-TEEEEEEEEEECC
T ss_pred HHHHHHhhC-CeEEEEEeccccc
Confidence 999999977 6998887765543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=136.50 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=96.8
Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
+.+.+.++.+|||||||+|.++..+++ +.. .++++|.++.+.+.+++.. .++.+..++..+++ .+++
T Consensus 51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~--~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~---~~~~ 117 (279)
T 3ccf_A 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--SGA--EVLGTDNAATMIEKARQNY------PHLHFDVADARNFR---VDKP 117 (279)
T ss_dssp HHHCCCTTCEEEEETCTTSHHHHHHHH--TTC--EEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC---CSSC
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHh--CCC--eEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC---cCCC
Confidence 334677888999999999999999988 333 4555555556655554422 24455555444433 4579
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------------c---ccCCCHHHHH
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------------F---CSRLGGEECT 308 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------------~---~~~~~~~~l~ 308 (343)
||+|++..+++|+++... +|++++++||| ||++++..... . ...+..+++.
T Consensus 118 fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEPEA--AIASIHQALKS-GGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYV 194 (279)
T ss_dssp EEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHH
T ss_pred cCEEEEcchhhhCcCHHH--HHHHHHHhcCC-CcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHH
Confidence 999999999999998765 99999999999 99999863211 0 0122488999
Q ss_pred HHHHhcCCcEEEeeec
Q 019282 309 KRLTSLGLEYIGKKTH 324 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~ 324 (343)
++|+++||+++.....
T Consensus 195 ~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 195 NILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHTEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEe
Confidence 9999999999876543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=134.89 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=99.7
Q ss_pred HHHHHHHH-hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAE-ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~-~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
.+.+.+.. ...+.++.+|||||||+|.++..+++. +..++++|.++.+.+.+++.. .+. ..++.+..++..++
T Consensus 25 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~~d~~~~ 98 (263)
T 2yqz_A 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR----GYRYIALDADAAMLEVFRQKI-AGV-DRKVQVVQADARAI 98 (263)
T ss_dssp HHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT----TCEEEEEESCHHHHHHHHHHT-TTS-CTTEEEEESCTTSC
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHh-hcc-CCceEEEEcccccC
Confidence 34444433 236778899999999999999999874 334555555555555555433 111 23566666644443
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---c---------------c-------cC
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---F---------------C-------SR 301 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---~---------------~-------~~ 301 (343)
+ + .+++||+|++..++||+++... ++++++++||| ||.+++..... . . ..
T Consensus 99 ~-~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T 2yqz_A 99 P-L-PDESVHGVIVVHLWHLVPDWPK--VLAEAIRVLKP-GGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHA 173 (263)
T ss_dssp C-S-CTTCEEEEEEESCGGGCTTHHH--HHHHHHHHEEE-EEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHH
T ss_pred C-C-CCCCeeEEEECCchhhcCCHHH--HHHHHHHHCCC-CcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCccccccc
Confidence 3 2 3578999999999999987655 99999999999 99998863221 0 0 01
Q ss_pred CCHHHHHHHHHhcCCcEEEeee
Q 019282 302 LGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+..+++.++|+++||+++....
T Consensus 174 ~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 174 KRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHHHHcCCCcceEEE
Confidence 1277888999999999776544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=134.54 Aligned_cols=144 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
+++.+|||||||+|.++..+++.. ...++++|+++ .+.+.+++...... ..++.++.++..++. . .+++||+|+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~--~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~-~-~~~~fD~v~ 151 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITE--DFLVQAKTYLGEEG-KRVRNYFCCGLQDFT-P-EPDSYDVIW 151 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCH--HHHHHHHHHTGGGG-GGEEEEEECCGGGCC-C-CSSCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCH--HHHHHHHHHhhhcC-CceEEEEEcChhhcC-C-CCCCEEEEE
Confidence 367899999999999999888754 23455555555 44444444322110 113455555333333 2 356899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc----------ccCCCHHHHHHHHHhcCCcEEEeeecccccc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF----------CSRLGGEECTKRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~----------~~~~~~~~l~~~L~~aGf~~v~~~~~~~l~~ 329 (343)
+..+++|++++....+|++++++||| ||++++...... ......+++.++++++||+++.......++.
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 230 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRP-NGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENLPD 230 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSCCT
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCCCcc
Confidence 99999999987766799999999999 999998642111 1112489999999999999999877665554
Q ss_pred c
Q 019282 330 N 330 (343)
Q Consensus 330 ~ 330 (343)
.
T Consensus 231 ~ 231 (241)
T 2ex4_A 231 E 231 (241)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=131.87 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=97.0
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCC---CCCcEEEecccCCcCCCCCCCc
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLL---HKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~---~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
++++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+.. ..++.+..++..+++ + .+++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK----GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-F-HDSS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-S-CTTC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-C-CCCc
Confidence 457889999999999999999985 3344455555555555444332 2221 113455555433333 2 3678
Q ss_pred eeEEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEeccc------------------------------------
Q 019282 255 YDLIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSHNIK------------------------------------ 297 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~~~~------------------------------------ 297 (343)
||+|++..+++|+++.. ...++++++++||| ||++++.....
T Consensus 102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKP-GAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCC-CeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcce
Confidence 99999999999998754 44599999999999 99998873110
Q ss_pred cccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 298 FCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 298 ~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
....++.+++.++|+++||+++.....
T Consensus 181 ~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 181 IAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 112346999999999999999987654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-15 Score=135.51 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+.+.+.....++++.+|||||||+|.++..+++..+...++++|+++..... +++... .+. . ++.++.++..+
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~--a~~~~~~~~~-~-~~~~~~~d~~~ 98 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK--ARENTEKNGI-K-NVKFLQANIFS 98 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH--HHHHHHHTTC-C-SEEEEECCGGG
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH--HHHHHHHcCC-C-CcEEEEccccc
Confidence 345555655566788999999999999999999998766666666665554444 443322 222 2 46666654444
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc--------------------------c
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--------------------------C 299 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--------------------------~ 299 (343)
++ + .+++||+|++..+++|+++... ++++++++||| ||++++...... .
T Consensus 99 ~~-~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (276)
T 3mgg_A 99 LP-F-EDSSFDHIFVCFVLEHLQSPEE--ALKSLKKVLKP-GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKG 173 (276)
T ss_dssp CC-S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTC
T ss_pred CC-C-CCCCeeEEEEechhhhcCCHHH--HHHHHHHHcCC-CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCC
Confidence 33 2 3679999999999999998765 99999999999 999998642100 0
Q ss_pred cCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 300 SRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 300 ~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
..+...++.++|+++||+++.....
T Consensus 174 ~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 174 NSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp CTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred CcchHHHHHHHHHHCCCCeEEEeeE
Confidence 1122578889999999999987754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=139.74 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHH----cCCCceEEEEcChhHHHHHHHHhcccC--CCCCCCcEEEecccCCcC-----C
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRY----LNPENFHCLERDELSLMAAFRYELPSQ--GLLHKRPIIVRGEDMDFT-----K 248 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~----~~~~~~~vvdid~s~~~~a~a~~~~~~--~~~~~~~~~~~~~~~dl~-----~ 248 (343)
.++.+|||||||+|.++..++.. .+...+.++++|++..|.+.+++.... +..+....+..++..++. .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 56779999999999877654432 233322347778887877766654332 221111122222222222 0
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTK 309 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~ 309 (343)
+ .+++||+|++..++||+++... .|++++++||| ||++++..... ....+..+++.+
T Consensus 131 ~-~~~~fD~V~~~~~l~~~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (292)
T 2aot_A 131 K-ELQKWDFIHMIQMLYYVKDIPA--TLKFFHSLLGT-NAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQ 206 (292)
T ss_dssp T-CCCCEEEEEEESCGGGCSCHHH--HHHHHHHTEEE-EEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHH
T ss_pred c-CCCceeEEEEeeeeeecCCHHH--HHHHHHHHcCC-CcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHH
Confidence 1 3578999999999999998866 99999999999 99998863111 112245899999
Q ss_pred HHHhcCCcEEEeee
Q 019282 310 RLTSLGLEYIGKKT 323 (343)
Q Consensus 310 ~L~~aGf~~v~~~~ 323 (343)
+|+++||+++....
T Consensus 207 ~l~~aGf~~~~~~~ 220 (292)
T 2aot_A 207 MLDNLGLKYECYDL 220 (292)
T ss_dssp HHHHHTCCEEEEEE
T ss_pred HHHHCCCceEEEEe
Confidence 99999999876433
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=129.46 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=99.0
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
.+...++..++.+|||||||+|.++..+++. +...++++| .++.+.+.+++... ..++.+..++..+++ + .
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD--~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~-~ 104 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLD--LSEKMLARARAAGP----DTGITYERADLDKLH-L-P 104 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEE--SCHHHHHHHHHTSC----SSSEEEEECCGGGCC-C-C
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEc--CCHHHHHHHHHhcc----cCCceEEEcChhhcc-C-C
Confidence 3444566678899999999999999999884 222444554 45555555554322 124556655433333 2 3
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------------c---------
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------------F--------- 298 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------------~--------- 298 (343)
+++||+|++..+++|+++... +|++++++||| ||++++..... +
T Consensus 105 ~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVEDVAR--LFRTVHQALSP-GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTD 181 (243)
T ss_dssp TTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTT
T ss_pred CCCceEEEEeccccccchHHH--HHHHHHHhcCc-CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeee
Confidence 678999999999999987655 99999999999 99999863110 0
Q ss_pred -------ccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 299 -------CSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 299 -------~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
...++.+++.++|+++||+++.....
T Consensus 182 ~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 182 WLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00135899999999999999887654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=132.56 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhH----HHHHHHHhcccCCCCCCCcEEEe
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELS----LMAAFRYELPSQGLLHKRPIIVR 240 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~----~~~a~a~~~~~~~~~~~~~~~~~ 240 (343)
+.+....+.+.+.++++.+|||||||+|.++..+++.. +...++++|+++.. .+.+.++++........++.+..
T Consensus 28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 44566667777788999999999999999999999876 33455555555430 13334443322211122556665
Q ss_pred cccCCcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------
Q 019282 241 GEDMDFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------------------- 297 (343)
Q Consensus 241 ~~~~dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------------------- 297 (343)
++.......+ .+++||+|++..+++|++++.. +++.+.++++| ||++++.....
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~--~~~~~~~l~~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWYFASANA--LALLFKNMAAV-CDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYA 184 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHH--HHHHHHHHTTT-CSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHH
T ss_pred CChhhhccCCCCCCCEEEEEEccchhhCCCHHH--HHHHHHHHhCC-CCEEEEEEecCCCCchhhhhHHHHHHHHHHHhh
Confidence 5300011111 3578999999999999998865 88888999999 99999863100
Q ss_pred -------c-ccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 298 -------F-CSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 298 -------~-~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
. ...++.+++.++++++||+++.....
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 01234889999999999999987765
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-16 Score=150.03 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=107.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+.+.+.+...+.++.+|||||||+|.++..+++ .+..++++|++..+.+.+++. +.......+..+...
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~----~g~~v~gvD~s~~~~~~a~~~---~~~~~~~~~~~~~~~ 163 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQE----AGVRHLGFEPSSGVAAKAREK---GIRVRTDFFEKATAD 163 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHH----TTCEEEEECCCHHHHHHHHTT---TCCEECSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHH----cCCcEEEECCCHHHHHHHHHc---CCCcceeeechhhHh
Confidence 3456677777778888899999999999999999988 355788888888888777653 221101111111111
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---------------ccccCCCHHHHHH
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---------------KFCSRLGGEECTK 309 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---------------~~~~~~~~~~l~~ 309 (343)
+++ + .+++||+|++..+++|+++... +|++++++||| ||++++.... .....++.+++.+
T Consensus 164 ~l~-~-~~~~fD~I~~~~vl~h~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 164 DVR-R-TEGPANVIYAANTLCHIPYVQS--VLEGVDALLAP-DGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQG 238 (416)
T ss_dssp HHH-H-HHCCEEEEEEESCGGGCTTHHH--HHHHHHHHEEE-EEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHH
T ss_pred hcc-c-CCCCEEEEEECChHHhcCCHHH--HHHHHHHHcCC-CeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHH
Confidence 111 1 2578999999999999997765 99999999999 9999997421 1122345899999
Q ss_pred HHHhcCCcEEEeeec
Q 019282 310 RLTSLGLEYIGKKTH 324 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~ 324 (343)
+++++||+++.....
T Consensus 239 ll~~aGf~~~~~~~~ 253 (416)
T 4e2x_A 239 MAQRCGFELVDVQRL 253 (416)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCEEEEEEEc
Confidence 999999999887653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=139.60 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC--CCCcEEEecccCCc
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL--HKRPIIVRGEDMDF 246 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~--~~~~~~~~~~~~dl 246 (343)
....+.+.+...++ +|||||||+|.++..+++. ...++++|++ +.+.+.+++....... ..++.++.++..++
T Consensus 71 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 71 EAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL--GWEVTALELS--TSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT--TCCEEEEESC--HHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc--CCeEEEEECC--HHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 44445444454444 9999999999999999884 2344555554 4555544443322110 02567777644443
Q ss_pred CCCCCCCceeEEEEc-cccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---------------------------
Q 019282 247 TKFGSGVVYDLIYAS-AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--------------------------- 298 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~-~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--------------------------- 298 (343)
+.+++||+|++. .+++|+++.....+|++++++||| ||+|++......
T Consensus 146 ---~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (299)
T 3g2m_A 146 ---ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP-GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221 (299)
T ss_dssp ---CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE-EEEEEEEEECCHHHHSCCCCC-------------CCEEE
T ss_pred ---CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC-CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEE
Confidence 346799999865 677777766667799999999999 999998621100
Q ss_pred ---------------------------ccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 299 ---------------------------CSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 299 ---------------------------~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
...++.+++.++|+++||+++......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 012358999999999999999877543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-15 Score=131.11 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ++.++.++..+ .+..++||+|
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~----~~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~---~~~~~~fD~v 105 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISN---LNINRKFDLI 105 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGG---CCCSCCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC----CCcEEEEECCHHHHHHHHHHHhhcCC---CeEEEeccccc---CCccCCceEE
Confidence 36789999999999999999874 3456666666666665554332 222 45566553333 3233789999
Q ss_pred EEcc-ccccCCc-hHHHHHHHHHHhccCCCCcEEEEEeccc---------------------------------------
Q 019282 259 YASA-VFLHMPD-KLVWVGLERLASKLRPYDGRIFVSHNIK--------------------------------------- 297 (343)
Q Consensus 259 vs~~-v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------------------------- 297 (343)
++.. +++|+++ .....+|++++++||| ||.+++.....
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKE-GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFF 184 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEE-EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCC-CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEE
Confidence 9998 9999944 4556699999999999 99998852100
Q ss_pred --------------cccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 298 --------------FCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 298 --------------~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
....++.+++.++|+++||+++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 185 VRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp EECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 01334699999999999999988754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.06 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+.+.+... ++++.+|||||||+|.++..+++. +..++++|.++.+.+.+++.. . ++.++.++..+
T Consensus 38 ~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~----~--~~~~~~~d~~~- 104 (263)
T 3pfg_A 38 ADLAALVRRH--SPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARRRN----P--DAVLHHGDMRD- 104 (263)
T ss_dssp HHHHHHHHHH--CTTCCEEEEETCTTSHHHHHHTTT----SSEEEEEESCHHHHHHHHHHC----T--TSEEEECCTTT-
T ss_pred HHHHHHHHhh--CCCCCcEEEeCCcCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhC----C--CCEEEECChHH-
Confidence 4455555543 356789999999999999998874 234555555555555555422 1 45666654333
Q ss_pred CCCCCCCceeEEEEcc-ccccCCc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASA-VFLHMPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~-v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++.+++||+|++.. +++|+++ .....+|++++++||| ||++++.
T Consensus 105 --~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~i~ 150 (263)
T 3pfg_A 105 --FSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP-DGVVVVE 150 (263)
T ss_dssp --CCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE-EEEEEEC
T ss_pred --CCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC-CcEEEEE
Confidence 33467999999998 9999965 3455689999999999 9999984
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-14 Score=126.30 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=97.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+++. + .. ++++|.+..+.+.+++.. ..+..++..++.....+++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~--~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TR--VSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CE--EEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-Ce--EEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEE
Confidence 67789999999999999999885 3 44 444555555555554321 134444333321111357899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHHhc
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLTSL 314 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~~a 314 (343)
+..+++|+++... ++++++++|+| ||.+++..... ....++.+++.++++++
T Consensus 99 ~~~~l~~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (230)
T 3cc8_A 99 FGDVLEHLFDPWA--VIEKVKPYIKQ-NGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKA 175 (230)
T ss_dssp EESCGGGSSCHHH--HHHHTGGGEEE-EEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHT
T ss_pred ECChhhhcCCHHH--HHHHHHHHcCC-CCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHc
Confidence 9999999988765 99999999999 99999874210 01224589999999999
Q ss_pred CCcEEEeeeccccccchhHHhh
Q 019282 315 GLEYIGKKTHDSLLFNHYEIWF 336 (343)
Q Consensus 315 Gf~~v~~~~~~~l~~~~~e~w~ 336 (343)
||+++......... ..+..|.
T Consensus 176 Gf~~~~~~~~~~~~-~~~~~~~ 196 (230)
T 3cc8_A 176 GYSISKVDRVYVDH-KMYEPLI 196 (230)
T ss_dssp TEEEEEEEEEECCC-GGGHHHH
T ss_pred CCeEEEEEecccCh-hhccchH
Confidence 99998877644332 3444444
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=126.04 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=96.2
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+.+.++.+|||||||+|.++..+++.. ..++++|.++.+.+.+++. ..++.+..++ .+ + .+++||
T Consensus 13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~-~-~~~~~D 77 (170)
T 3i9f_A 13 IFEGKKGVIVDYGCGNGFYCKYLLEFA----TKLYCIDINVIALKEVKEK------FDSVITLSDP---KE-I-PDNSVD 77 (170)
T ss_dssp HHSSCCEEEEEETCTTCTTHHHHHTTE----EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GG-S-CTTCEE
T ss_pred cCcCCCCeEEEECCCCCHHHHHHHhhc----CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CC-C-CCCceE
Confidence 356778899999999999999999854 2566666666666655543 2256666553 22 3 357899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--------ccccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--------KFCSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--------~~~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
+|++..+++|+++... ++++++++||| ||++++.... .....+..+++.++++ ||+++......
T Consensus 78 ~v~~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~ 149 (170)
T 3i9f_A 78 FILFANSFHDMDDKQH--VISEVKRILKD-DGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT 149 (170)
T ss_dssp EEEEESCSTTCSCHHH--HHHHHHHHEEE-EEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred EEEEccchhcccCHHH--HHHHHHHhcCC-CCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence 9999999999987765 99999999999 9999987421 1233356889999888 99998876543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=130.71 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+.+.+.+.+.+.++.+|||||||+|.++..+++ .+..++++|.++.+.+.+++. . ++.++.++..++
T Consensus 20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~~d~~~~ 88 (261)
T 3ege_A 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN----QGLFVYAVEPSIVMRQQAVVH----P---QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT----TTCEEEEECSCHHHHHSSCCC----T---TEEEECCCTTSC
T ss_pred HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh----CCCEEEEEeCCHHHHHHHHhc----c---CCEEEECchhhC
Confidence 34666677777788899999999999999999987 345677777777777644321 1 566666544443
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe-ccc-----cc------------cCC-CHHHH
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH-NIK-----FC------------SRL-GGEEC 307 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~-~~~-----~~------------~~~-~~~~l 307 (343)
+ + .+++||+|++..+++|+++... ++++++++|| ||++++.. ... +. ..+ ..+++
T Consensus 89 ~-~-~~~~fD~v~~~~~l~~~~~~~~--~l~~~~~~Lk--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (261)
T 3ege_A 89 A-L-PDKSVDGVISILAIHHFSHLEK--SFQEMQRIIR--DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQI 162 (261)
T ss_dssp C-S-CTTCBSEEEEESCGGGCSSHHH--HHHHHHHHBC--SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHH
T ss_pred C-C-CCCCEeEEEEcchHhhccCHHH--HHHHHHHHhC--CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHH
Confidence 3 2 3579999999999999987765 9999999999 78766652 111 10 112 26778
Q ss_pred HHHHHhcCCcEEEeeec
Q 019282 308 TKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~~ 324 (343)
. +|+++||+.+.....
T Consensus 163 ~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 163 N-LLQENTKRRVEAIPF 178 (261)
T ss_dssp H-HHHHHHCSEEEEEEC
T ss_pred H-HHHHcCCCceeEEEe
Confidence 8 999999998887654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=135.96 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHH-HHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFI-RYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la-~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..++++.+|||||||+|.++..++ ...+...++++|+++ .+.+.++++.......+++.++.++..+++ ..++|
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~f 188 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDP--EALDGATRLAAGHALAGQITLHRQDAWKLD---TREGY 188 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEECCGGGCC---CCSCE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECchhcCC---ccCCe
Confidence 456788999999999999999885 334444555555555 445444544332222334677776444433 34899
Q ss_pred eEEEEccccccCCchHH-HHHHHHHHhccCCCCcEEEEEecc---------ccc-------------------------c
Q 019282 256 DLIYASAVFLHMPDKLV-WVGLERLASKLRPYDGRIFVSHNI---------KFC-------------------------S 300 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~-~~~L~~l~r~LkP~GG~lvi~~~~---------~~~-------------------------~ 300 (343)
|+|+++.+++|++++.. ..++++++++||| ||++++.... .+. .
T Consensus 189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDDARVTELYRRFWQALKP-GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNA 267 (305)
T ss_dssp EEEECCSSGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCC
T ss_pred EEEEECChhhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhc
Confidence 99999999999977643 3579999999999 9999987411 100 1
Q ss_pred CCCHHHHHHHHHhcCCcEEEeee
Q 019282 301 RLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 301 ~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
.++.+++.+.|+++||+++....
T Consensus 268 ~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 268 LRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHCCCEEEEEEc
Confidence 24589999999999999988764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=125.36 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=94.2
Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCC
Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
+.+...++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. .++.+..++..+++ .++
T Consensus 26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~---~~~ 96 (199)
T 2xvm_A 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENL--DNLHTRVVDLNNLT---FDR 96 (199)
T ss_dssp HHTTTSCSCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTC--TTEEEEECCGGGCC---CCC
T ss_pred HHhhccCCCeEEEEcCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhCCC--CCcEEEEcchhhCC---CCC
Confidence 3345567789999999999999999884 3345555555555554444322 222 13556655333332 367
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---------ccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---------KFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---------~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+||+|++..+++|++......+++++.++||| ||.+++.... .+...+..+++.+++++ |+++....
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEE-EEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 89999999999999866667799999999999 9998775311 11123358889888876 98887653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=133.16 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=97.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|.++..+++. +...++++|+++ .+.+.+++.........++.++.++..+++ +..+++||+
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~ 136 (298)
T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAE--VSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDV 136 (298)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCH--HHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCH--HHHHHHHHHHHhcCCCccEEEEECCccccc-cCCCCCcCE
Confidence 3578889999999999999998774 333455555555 444444443322111224566666444433 223678999
Q ss_pred EEEcccccc--CCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------------c---------
Q 019282 258 IYASAVFLH--MPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------------------F--------- 298 (343)
Q Consensus 258 Ivs~~v~~h--l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------------------~--------- 298 (343)
|++..++|| ........+|++++++||| ||++++..... .
T Consensus 137 v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (298)
T 1ri5_A 137 ISSQFSFHYAFSTSESLDIAQRNIARHLRP-GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT 215 (298)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred EEECchhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence 999999988 4445556699999999999 99999873210 0
Q ss_pred ---------ccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 299 ---------CSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 299 ---------~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
...++++++.++++++||+++......
T Consensus 216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred EchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 011247999999999999999876544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=134.61 Aligned_cols=142 Identities=16% Similarity=0.054 Sum_probs=102.7
Q ss_pred HhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCC
Q 019282 175 EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
+.....+..+|||||||+|.++..+++.++...++++|+ + .+.+.+++... .+. ..++.+..++.. ..+ + .
T Consensus 163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~-~~~v~~~~~d~~--~~~-p-~ 234 (332)
T 3i53_A 163 AKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-Q--GPASAAHRRFLDTGL-SGRAQVVVGSFF--DPL-P-A 234 (332)
T ss_dssp GSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTC-TTTEEEEECCTT--SCC-C-C
T ss_pred HhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-H--HHHHHHHHhhhhcCc-CcCeEEecCCCC--CCC-C-C
Confidence 334456678999999999999999999887766666665 4 34444443322 333 236777766332 222 2 2
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-----------------ccCCCHHHHHHHHHhcCC
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-----------------CSRLGGEECTKRLTSLGL 316 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-----------------~~~~~~~~l~~~L~~aGf 316 (343)
.||+|++..++||++++....+|++++++||| ||++++...... ...++.+++.++++++||
T Consensus 235 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 313 (332)
T 3i53_A 235 GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS-GGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGL 313 (332)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT-TCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTE
T ss_pred CCcEEEEehhhccCCHHHHHHHHHHHHHhcCC-CCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCC
Confidence 89999999999999998777899999999999 999998742110 123458999999999999
Q ss_pred cEEEeeecc
Q 019282 317 EYIGKKTHD 325 (343)
Q Consensus 317 ~~v~~~~~~ 325 (343)
++++.....
T Consensus 314 ~~~~~~~~~ 322 (332)
T 3i53_A 314 AVRAAHPIS 322 (332)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEECC
Confidence 998876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=133.24 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCC--CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 168 DVFEFLAEASHI--TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 168 ~~~~~l~~~~~l--~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.....+.+.... .++.+|||||||+|.++..+++.++...++++|++ .+.+.+++... .+. ..++.++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~~a~~~~~~~~~-~~~v~~~~~--- 222 (335)
T 2r3s_A 150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA---SVLEVAKENARIQGV-ASRYHTIAG--- 222 (335)
T ss_dssp HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH---HHHHHHHHHHHHHTC-GGGEEEEES---
T ss_pred hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH---HHHHHHHHHHHhcCC-CcceEEEec---
Confidence 344455555566 77889999999999999999998766555555555 34444443322 232 225666665
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------cccCC
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------------FCSRL 302 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------------~~~~~ 302 (343)
|+.+.+..+.||+|++..++||++++....+|++++++|+| ||++++..... ....+
T Consensus 223 d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (335)
T 2r3s_A 223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV-EGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAY 301 (335)
T ss_dssp CTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCC
T ss_pred ccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC-CcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcC
Confidence 33322233459999999999999888777899999999999 99988863211 11234
Q ss_pred CHHHHHHHHHhcCCcEEEeee
Q 019282 303 GGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+.+++.++++++||+.++...
T Consensus 302 t~~~~~~ll~~aGf~~~~~~~ 322 (335)
T 2r3s_A 302 TFAEYESMFSNAGFSHSQLHS 322 (335)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC
T ss_pred CHHHHHHHHHHCCCCeeeEEE
Confidence 589999999999999988654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=138.57 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=100.2
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccC------C-CCCCCcEEEecccCCcC---
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQ------G-LLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~------~-~~~~~~~~~~~~~~dl~--- 247 (343)
+.++.+|||||||+|.++..+++.+ +...++++|+++ .+.+.++++... | ....++.++.++..++.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD--NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCH--HHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 5578899999999999999999876 344555555544 555555543221 2 22246777777555542
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------------cccCCCHHHH
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------------FCSRLGGEEC 307 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------------~~~~~~~~~l 307 (343)
.+ .+++||+|+++.+++|+++... +|++++++||| ||++++..... ....+..+++
T Consensus 159 ~~~~-~~~~fD~V~~~~~l~~~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
T 4fsd_A 159 PEGV-PDSSVDIVISNCVCNLSTNKLA--LFKEIHRVLRD-GGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF 234 (383)
T ss_dssp SCCC-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred cCCC-CCCCEEEEEEccchhcCCCHHH--HHHHHHHHcCC-CCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence 12 3679999999999999988755 99999999999 99999873111 0112347999
Q ss_pred HHHHHhcCCcEEEeeecc
Q 019282 308 TKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~~~ 325 (343)
.++|+++||+.++.....
T Consensus 235 ~~ll~~aGF~~v~~~~~~ 252 (383)
T 4fsd_A 235 RRLVAEAGFRDVRLVSVG 252 (383)
T ss_dssp HHHHHHTTCCCEEEEEEE
T ss_pred HHHHHHCCCceEEEEecc
Confidence 999999999987655433
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=126.75 Aligned_cols=131 Identities=17% Similarity=0.154 Sum_probs=90.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC--CCCCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--KFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--~~~~~~~f 255 (343)
...++.+|||||||+|.++..+++. +..++++|.++.+.+.+++. ....+..++..++. ....+++|
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADR----GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHC----CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCc
Confidence 3445689999999999999999884 33455555555666655543 12333433333331 12345569
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---------------------------ccCCCHHHHH
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF---------------------------CSRLGGEECT 308 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~---------------------------~~~~~~~~l~ 308 (343)
|+|++..+++ ..+... ++++++++||| ||++++...... ...++.+++.
T Consensus 118 D~v~~~~~l~-~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 118 DLICANFALL-HQDIIE--LLSAMRTLLVP-GGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEEEESCCC-SSCCHH--HHHHHHHTEEE-EEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred cEEEECchhh-hhhHHH--HHHHHHHHhCC-CeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHH
Confidence 9999999998 555544 99999999999 999998742110 0113589999
Q ss_pred HHHHhcCCcEEEeee
Q 019282 309 KRLTSLGLEYIGKKT 323 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~ 323 (343)
++|+++||+++....
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998665
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=136.87 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=95.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC----------------------------
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL---------------------------- 231 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~---------------------------- 231 (343)
.++.+|||||||+|.++..+++.++...++++|+++..+..+ ++......
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSA--RQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHH--HHTC--------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHH--HHHHHhhhhhhccccccccccccccccccccccccc
Confidence 357899999999999999999988767767777766555544 43322110
Q ss_pred -----------------------------CCCCcEEEecccCCcC----CCCCCCceeEEEEccccccC----CchHHHH
Q 019282 232 -----------------------------LHKRPIIVRGEDMDFT----KFGSGVVYDLIYASAVFLHM----PDKLVWV 274 (343)
Q Consensus 232 -----------------------------~~~~~~~~~~~~~dl~----~~~~~~~fDlIvs~~v~~hl----~~~~~~~ 274 (343)
...++.+..++..+.. .+ ..+.||+|+|..+++|+ .+.....
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~-~~~~fD~I~~~~vl~~ihl~~~~~~~~~ 201 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEA-QTPEYDVVLCLSLTKWVHLNWGDEGLKR 201 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTT-CCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccc-cCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence 0025666665332211 11 35789999999999887 5556667
Q ss_pred HHHHHHhccCCCCcEEEEEecc--cc---------------ccCCCHHHHHHHHHh--cCCcEEEeee
Q 019282 275 GLERLASKLRPYDGRIFVSHNI--KF---------------CSRLGGEECTKRLTS--LGLEYIGKKT 323 (343)
Q Consensus 275 ~L~~l~r~LkP~GG~lvi~~~~--~~---------------~~~~~~~~l~~~L~~--aGf~~v~~~~ 323 (343)
+|++++++||| ||+|++.... .+ ...+.++++.++|.+ +||+.++...
T Consensus 202 ~l~~~~~~Lkp-GG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 202 MFRRIYRHLRP-GGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHHHHHEEE-EEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHHHHHhCC-CcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999999 9999997210 00 012237889999998 9998776554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=133.07 Aligned_cols=146 Identities=23% Similarity=0.198 Sum_probs=106.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
....+.+..++.+..+|||||||+|.++..+++.++...++++|+ + .+.+.+++... .+. ..++.+..+ |+.
T Consensus 190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~l-~~~v~~~~~---d~~ 262 (369)
T 3gwz_A 190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-P--PVAEEARELLTGRGL-ADRCEILPG---DFF 262 (369)
T ss_dssp HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTC-TTTEEEEEC---CTT
T ss_pred hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-H--HHHHHHHHhhhhcCc-CCceEEecc---CCC
Confidence 345566667778889999999999999999999887666666665 4 34444443322 333 336777766 333
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-------------------ccCCCHHHHH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-------------------CSRLGGEECT 308 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-------------------~~~~~~~~l~ 308 (343)
+. ....||+|++..++|+++++....+|++++++||| ||++++...... ...++.+++.
T Consensus 263 ~~-~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 340 (369)
T 3gwz_A 263 ET-IPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP-DSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFA 340 (369)
T ss_dssp TC-CCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHH
T ss_pred CC-CCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHH
Confidence 22 12389999999999999998877799999999999 999998632110 1124589999
Q ss_pred HHHHhcCCcEEEeee
Q 019282 309 KRLTSLGLEYIGKKT 323 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~ 323 (343)
++++++||++++...
T Consensus 341 ~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 341 ALLEKSGLRVERSLP 355 (369)
T ss_dssp HHHHTTTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 999999999988754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=135.94 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=103.4
Q ss_pred HHHHhcCCCC-CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 172 FLAEASHITP-NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 172 ~l~~~~~l~~-~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
.+.+..++.+ +.+|||||||+|.++..+++.++...++++|+ +. +.+.+++... .+. ..++.++.++..+.+.+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~ 244 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PT--TRDAARKTIHAHDL-GGRVEFFEKNLLDARNF 244 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GG--GHHHHHHHHHHTTC-GGGEEEEECCTTCGGGG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HH--HHHHHHHHHHhcCC-CCceEEEeCCcccCccc
Confidence 4555566666 78999999999999999999887777777776 33 3333333222 232 23566776633322211
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------c---------------cccCCCHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------K---------------FCSRLGGEEC 307 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------~---------------~~~~~~~~~l 307 (343)
..+.||+|++..++||++++....+|++++++||| ||++++.... . ....++.+++
T Consensus 245 -~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 245 -EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP-GGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp -TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE-EEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred -CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHH
Confidence 34579999999999999998777899999999999 9999886311 0 1123458999
Q ss_pred HHHHHhcCCcEEEe
Q 019282 308 TKRLTSLGLEYIGK 321 (343)
Q Consensus 308 ~~~L~~aGf~~v~~ 321 (343)
.++++++||++++.
T Consensus 323 ~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 323 AGVVRDAGLAVGER 336 (352)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHCCCceeee
Confidence 99999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=120.69 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=94.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
++++.+|||||||+|.++..+++. +..++++|.++.+.+.+++.. .++.++.++..+++ + .+++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~-~-~~~~~D~i 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ-I-SETDFDLI 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC-C-CCCCEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC----CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC-C-CCCceeEE
Confidence 567889999999999999999884 234455555555555444422 13455555333332 2 35789999
Q ss_pred EEc-cccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 259 YAS-AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 259 vs~-~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
++. .+++|++.+....+++++.++|+| ||.+++.... ...+..+++.+.++++||+++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~G~l~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGA-DGRAVIGFGA--GRGWVFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEET--TSSCCHHHHHHHHHHHTEEEEEEES
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCC-CCEEEEEeCC--CCCcCHHHHHHHHHHcCCEEeeeec
Confidence 998 789998777677799999999999 9999987532 2335689999999999999887643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=126.58 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=98.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~ 254 (343)
++++||.+|||+|||+|.++.++++...+ ..++++|+++.+...+ ++.... . .++..+.++..+...+. ..+.
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l--~~~a~~-~--~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDL--LTVVRD-R--RNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHH--HHHSTT-C--TTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHH--HHhhHh-h--cCeeEEEEeccCccccccccce
Confidence 56899999999999999999999998754 4456666666554444 332221 1 24555655443333222 3578
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc---cCCC--HHHHHHHHHhcCCcEEEeeecccccc
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC---SRLG--GEECTKRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~---~~~~--~~~l~~~L~~aGf~~v~~~~~~~l~~ 329 (343)
+|+|++... |-.+.. .++.++++.||| ||++++....... .... -.+..+.|+++||+.++.....++.+
T Consensus 148 vDvVf~d~~--~~~~~~--~~l~~~~r~LKp-GG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~ 222 (233)
T 4df3_A 148 VDGLYADVA--QPEQAA--IVVRNARFFLRD-GGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDR 222 (233)
T ss_dssp EEEEEECCC--CTTHHH--HHHHHHHHHEEE-EEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTST
T ss_pred EEEEEEecc--CChhHH--HHHHHHHHhccC-CCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCC
Confidence 999987532 333333 489999999999 9999987421111 1111 23345678899999999888888888
Q ss_pred chhH
Q 019282 330 NHYE 333 (343)
Q Consensus 330 ~~~e 333 (343)
+|+.
T Consensus 223 ~H~l 226 (233)
T 4df3_A 223 DHAM 226 (233)
T ss_dssp TEEE
T ss_pred ceEE
Confidence 8864
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=125.52 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.....+.......++.+|||||||+|.++..+++.. ..++++|.++.+.+.+++.... ..++.++.++..+
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~-- 108 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC----KRLTVIDVMPRAIGRACQRTKR---WSHISWAATDILQ-- 108 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE----EEEEEEESCHHHHHHHHHHTTT---CSSEEEEECCTTT--
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC----CEEEEEECCHHHHHHHHHhccc---CCCeEEEEcchhh--
Confidence 444555555677788899999999999999998853 3455555555555555543322 1256666664433
Q ss_pred CCCCCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEEeccc-----cccCCCHHHHHHHHHh
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVSHNIK-----FCSRLGGEECTKRLTS 313 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~~~~~-----~~~~~~~~~l~~~L~~ 313 (343)
+..+++||+|++..+++|++++ ....++++++++||| ||.+++..... +......+.+...+.+
T Consensus 109 -~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (216)
T 3ofk_A 109 -FSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAP-GGHLVFGSARDATCRRWGHVAGAETVITILTE 178 (216)
T ss_dssp -CCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEE-EEEEEEEEECHHHHHHTTCSCCHHHHHHHHHH
T ss_pred -CCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCC-CCEEEEEecCCCcchhhhhhhhHHHHHHHHHh
Confidence 3356899999999999999974 444689999999999 99999874221 2223346666666643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=132.25 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=102.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
...+.+..+++++.+|||||||+|.++..+++.++.. .++++|.+.... .......+. ..++.++.++.. ...
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~--~~~~~~~~~-~~~v~~~~~d~~--~~~ 245 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGL--QGVLLDRAEVVA--RHRLDAPDV-AGRWKVVEGDFL--REV 245 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTE--EEEEEECHHHHT--TCCCCCGGG-TTSEEEEECCTT--TCC
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCC--EEEEecCHHHhh--cccccccCC-CCCeEEEecCCC--CCC
Confidence 3456666778888999999999999999999987654 455555544333 111111222 235677765322 222
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------cccCCCHHHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------FCSRLGGEECTK 309 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~~~~~~~~~l~~ 309 (343)
. .||+|++..++||++++....+|++++++||| ||++++.+... ....++.+++.+
T Consensus 246 --p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp-gG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ 321 (348)
T 3lst_A 246 --P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPA-HGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEP 321 (348)
T ss_dssp --C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT-TCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHH
T ss_pred --C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHH
Confidence 2 89999999999999998767799999999999 99999874210 011234899999
Q ss_pred HHHhcCCcEEEeee
Q 019282 310 RLTSLGLEYIGKKT 323 (343)
Q Consensus 310 ~L~~aGf~~v~~~~ 323 (343)
+++++||++++...
T Consensus 322 ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 322 LFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHTTEEEEEEEE
T ss_pred HHHHCCCceEEEEE
Confidence 99999999988765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=129.72 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
...+.+.+...+.++.+|||||||+|.++..+++.++...++++|+ +.....+ ++... .+. .+++.++.++..+.
T Consensus 177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a--~~~~~~~~~-~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLV--NENAAEKGV-ADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHH--HHHHHHTTC-TTTEEEEECCTTTS
T ss_pred hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHH--HHHHHhcCC-CCCEEEEeCccccC
Confidence 3445666667788889999999999999999999887666677776 5444433 33322 233 33577776633332
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-----------------c--ccC----CC
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-----------------F--CSR----LG 303 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-----------------~--~~~----~~ 303 (343)
+.. .+|+|++..++||++++....+|++++++||| ||++++..... . ... ++
T Consensus 253 ---~~~-~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t 327 (359)
T 1x19_A 253 ---SYP-EADAVLFCRILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKE 327 (359)
T ss_dssp ---CCC-CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCC
T ss_pred ---CCC-CCCEEEEechhccCCHHHHHHHHHHHHHhcCC-CCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCC
Confidence 222 34999999999999987777799999999999 99998764110 0 112 56
Q ss_pred HHHHHHHHHhcCCcEEEeeec
Q 019282 304 GEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.+++.++++++||+.++....
T Consensus 328 ~~e~~~ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 328 QARYKEILESLGYKDVTMVRK 348 (359)
T ss_dssp GGGHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEec
Confidence 899999999999998876653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=131.49 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=104.2
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
..+.+...++++.+|||||||+|.++..+++.++...++++|+ + .+.+.+++... .+. ..++.++.++..+ .+
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~~~~~~~-~~~v~~~~~d~~~--~~ 245 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-A--GPAERARRRFADAGL-ADRVTVAEGDFFK--PL 245 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTC-TTTEEEEECCTTS--CC
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-H--HHHHHHHHHHHhcCC-CCceEEEeCCCCC--cC
Confidence 4455556777889999999999999999999876555555555 4 44444444322 333 2356777663322 12
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--c-cc-------------------ccCCCHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--I-KF-------------------CSRLGGEEC 307 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~-~~-------------------~~~~~~~~l 307 (343)
...||+|++..++||++++....+|++++++||| ||++++... . +. ...++.+++
T Consensus 246 --~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (374)
T 1qzz_A 246 --PVTADVVLLSFVLLNWSDEDALTILRGCVRALEP-GGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEV 322 (374)
T ss_dssp --SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred --CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHH
Confidence 2349999999999999988766799999999999 999988654 1 10 112468999
Q ss_pred HHHHHhcCCcEEEeeecc
Q 019282 308 TKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~~~ 325 (343)
.++++++||++++.....
T Consensus 323 ~~ll~~aGf~~~~~~~~~ 340 (374)
T 1qzz_A 323 VDLAGSAGLALASERTSG 340 (374)
T ss_dssp HHHHHTTTEEEEEEEEEC
T ss_pred HHHHHHCCCceEEEEECC
Confidence 999999999998876543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=123.39 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
...+.+... ++++.+|||||||+|.++..+++. .. ++++|.++.+.+.+++...... .++.++.++..+
T Consensus 22 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~--v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~-- 90 (243)
T 3d2l_A 22 EWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH---YE--VTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRE-- 90 (243)
T ss_dssp HHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT---SE--EEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGG--
T ss_pred HHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC---Ce--EEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhh--
Confidence 345555544 456789999999999999988874 34 4444555555554444332111 245666553333
Q ss_pred CCCCCCceeEEEEcc-ccccCC-chHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASA-VFLHMP-DKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~-v~~hl~-~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+..++||+|++.. +++|+. ......++++++++||| ||.+++.
T Consensus 91 -~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 136 (243)
T 3d2l_A 91 -LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTD-GGKLLFD 136 (243)
T ss_dssp -CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred -cCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 33347899999986 999984 34556689999999999 9999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=127.62 Aligned_cols=143 Identities=12% Similarity=0.044 Sum_probs=93.7
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-C-----------------------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-H----------------------- 233 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-~----------------------- 233 (343)
...++.+|||||||+|.++..++.... . .++++|.++.+.+.+++....... .
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-T--EIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-E--EEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-C--eEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 445678999999999999988876321 2 455555555555555443221100 0
Q ss_pred ----CCc-EEEecccCCcCCCCCC---CceeEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccc------
Q 019282 234 ----KRP-IIVRGEDMDFTKFGSG---VVYDLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIK------ 297 (343)
Q Consensus 234 ----~~~-~~~~~~~~dl~~~~~~---~~fDlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~------ 297 (343)
.++ .+..++..+.... .+ ++||+|++..+++|+... ....+|++++++||| ||++++.....
T Consensus 130 ~~l~~~v~~~~~~d~~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~~~~~~~~ 207 (265)
T 2i62_A 130 EKLRRAIKQVLKCDVTQSQPL-GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP-GGFLVMVDALKSSYYMI 207 (265)
T ss_dssp HHHHHHEEEEEECCTTSSSTT-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCCEEEE
T ss_pred HHhhhhheeEEEeeeccCCCC-CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEecCCCceEEc
Confidence 013 4555533333211 23 789999999999955432 445599999999999 99999874211
Q ss_pred -----cccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 298 -----FCSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 298 -----~~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
....+..+++.+.|+++||+++......
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 208 GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 1223458899999999999998877543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-14 Score=129.52 Aligned_cols=122 Identities=18% Similarity=0.280 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC--CCCCcEEEeccc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL--LHKRPIIVRGED 243 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~--~~~~~~~~~~~~ 243 (343)
....+.+...+...++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ...++.+..++.
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 334455555555567889999999999999999884 3345555555555555543221 111 112344555433
Q ss_pred CCcC-CCCCCCceeEEEEc-cccccCCc-----hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 244 MDFT-KFGSGVVYDLIYAS-AVFLHMPD-----KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 244 ~dl~-~~~~~~~fDlIvs~-~v~~hl~~-----~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+++ ++..+++||+|++. .+++|+++ .....++++++++||| ||++++.
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 174 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP-GGLLVID 174 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 3332 11135799999998 89999998 5556699999999999 9999986
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=121.30 Aligned_cols=110 Identities=19% Similarity=0.286 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+.... +++.+|||||||+|.++..+++..+ .++++|+++ .+.+.+++.. .++.++.++..+
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~--~~~~~a~~~~------~~~~~~~~d~~~-- 94 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSE--DMLTHARKRL------PDATLHQGDMRD-- 94 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCH--HHHHHHHHHC------TTCEEEECCTTT--
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCH--HHHHHHHHhC------CCCEEEECCHHH--
Confidence 3445555433 6778999999999999999998653 455555554 5555444321 135556553333
Q ss_pred CCCCCCceeEEEE-ccccccCCc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYA-SAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs-~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+..+++||+|+| ..+++|+++ .....+|++++++||| ||.+++.
T Consensus 95 -~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 140 (239)
T 3bxo_A 95 -FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP-GGVVVVE 140 (239)
T ss_dssp -CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEE-EEEEEEC
T ss_pred -cccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 333678999996 459999965 4556799999999999 9999886
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=132.50 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=99.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--CCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--GSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~~~fDl 257 (343)
.+..+|||||||+|.++..+++.++...++++|+ + .+.+.+++.........++.++.+ |+.+. +..+.||+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~p~~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-P--QQLEMMRKQTAGLSGSERIHGHGA---NLLDRDVPFPTGFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-H--HHHHHHHHHHTTCTTGGGEEEEEC---CCCSSSCCCCCCCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-H--HHHHHHHHHHHhcCcccceEEEEc---cccccCCCCCCCcCE
Confidence 4567999999999999999999887766666665 3 444444443322112235677766 33332 12368999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCCHHHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLGGEECTKRLT 312 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~~~~l~~~L~ 312 (343)
|++..++|+++++....+|++++++||| ||++++..... ....++.+++.++|+
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 330 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGK-DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIE 330 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCT-TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHH
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCC-CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHH
Confidence 9999999999998877899999999999 99998863110 011335899999999
Q ss_pred hcCCcEEEeee
Q 019282 313 SLGLEYIGKKT 323 (343)
Q Consensus 313 ~aGf~~v~~~~ 323 (343)
++||++++...
T Consensus 331 ~AGf~~v~~~~ 341 (363)
T 3dp7_A 331 NAGLEVEEIQD 341 (363)
T ss_dssp TTTEEESCCCC
T ss_pred HcCCeEEEEEe
Confidence 99999877653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=129.50 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ++.++.++..+ ...+++||+|
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~----g~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~---~~~~~~fD~i 188 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEKENL---NISTALYDINA---ANIQENYDFI 188 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGG---CCCCSCEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHcCC---ceEEEEecccc---ccccCCccEE
Confidence 36789999999999999999984 3345555555555555554433 232 55666653333 3336799999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------cccCCCHHHHHHHHHhcCCcEEEee
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------FCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
++..+++|++++....+++++.++||| ||.+++..... +...+..+++.+.+.. |+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNV-GGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEE-EEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCC-CcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 999999999888877899999999999 99987753211 1222337788887754 8877654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=129.63 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
++++.|.+.. +.+.+|||||||+|.++..|++. ...++++|++..|.+.+++ ..++.+..++..+++
T Consensus 28 ~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~----~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~ 94 (257)
T 4hg2_A 28 ALFRWLGEVA--PARGDALDCGCGSGQASLGLAEF----FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG 94 (257)
T ss_dssp HHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT----CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC
T ss_pred HHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh----CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc
Confidence 3667776553 34579999999999999999884 3456677777777764432 125667776555544
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+ ++++||+|++..++||+.. .. ++++++|+||| ||+|++.
T Consensus 95 -~-~~~sfD~v~~~~~~h~~~~-~~--~~~e~~rvLkp-gG~l~~~ 134 (257)
T 4hg2_A 95 -L-PPASVDVAIAAQAMHWFDL-DR--FWAELRRVARP-GAVFAAV 134 (257)
T ss_dssp -C-CSSCEEEEEECSCCTTCCH-HH--HHHHHHHHEEE-EEEEEEE
T ss_pred -c-cCCcccEEEEeeehhHhhH-HH--HHHHHHHHcCC-CCEEEEE
Confidence 3 4789999999999988854 33 89999999999 9999775
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=123.71 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=97.5
Q ss_pred HHHHHHH---HHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 167 RDVFEFL---AEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 167 ~~~~~~l---~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
....+.+ .+.+.+.++.+|||+|||+|.++..+++..+...++++|+++ .+.+.+++..... .++.++.++.
T Consensus 57 ~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~--~~~~~a~~~~~~~---~~v~~~~~d~ 131 (230)
T 1fbn_A 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAP--RIMRELLDACAER---ENIIPILGDA 131 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH--HHHHHHHHHTTTC---TTEEEEECCT
T ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH--HHHHHHHHHhhcC---CCeEEEECCC
Confidence 3344555 444567788999999999999999999976644555555555 4444444333221 3566666644
Q ss_pred CCcCC-CCCCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEEEeccccccCCC-------HHHHHHHHHhc
Q 019282 244 MDFTK-FGSGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-------GEECTKRLTSL 314 (343)
Q Consensus 244 ~dl~~-~~~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-------~~~l~~~L~~a 314 (343)
.+... ....+.||+|+ ++++++ ....+++++.++||| ||.+++..... +...+ .+++. .|+++
T Consensus 132 ~~~~~~~~~~~~~D~v~-----~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~-~~~~~~~~~~~~~~~l~-~l~~~ 203 (230)
T 1fbn_A 132 NKPQEYANIVEKVDVIY-----EDVAQPNQAEILIKNAKWFLKK-GGYGMIAIKAR-SIDVTKDPKEIFKEQKE-ILEAG 203 (230)
T ss_dssp TCGGGGTTTSCCEEEEE-----ECCCSTTHHHHHHHHHHHHEEE-EEEEEEEEEGG-GTCSSSCHHHHHHHHHH-HHHHH
T ss_pred CCcccccccCccEEEEE-----EecCChhHHHHHHHHHHHhCCC-CcEEEEEEecC-CCCCCCCHHHhhHHHHH-HHHHC
Confidence 43110 22236899998 455544 223479999999999 99999873211 11111 36676 88999
Q ss_pred CCcEEEeeeccccccchh
Q 019282 315 GLEYIGKKTHDSLLFNHY 332 (343)
Q Consensus 315 Gf~~v~~~~~~~l~~~~~ 332 (343)
||+.+.....+++...|+
T Consensus 204 Gf~~~~~~~~~~~~~~~~ 221 (230)
T 1fbn_A 204 GFKIVDEVDIEPFEKDHV 221 (230)
T ss_dssp TEEEEEEEECTTTSTTEE
T ss_pred CCEEEEEEccCCCccceE
Confidence 999988776655544444
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=129.15 Aligned_cols=146 Identities=17% Similarity=0.081 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
.....+.+..++.+ .+|||||||+|..+..+++.++...++++|+ +.....+ ++... .+. ..++.++.+ |+
T Consensus 155 ~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a--~~~~~~~~~-~~~v~~~~~---d~ 226 (334)
T 2ip2_A 155 LAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVA--RDNLSSLLA-GERVSLVGG---DM 226 (334)
T ss_dssp HHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHH--HHHTHHHHH-TTSEEEEES---CT
T ss_pred HHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHH--HHHHhhcCC-CCcEEEecC---CC
Confidence 34455666666777 8999999999999999999887666777776 5444333 33221 222 225667766 33
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------c--------------ccCCCHHH
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------F--------------CSRLGGEE 306 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------~--------------~~~~~~~~ 306 (343)
.+. ..+.||+|++..++||++++....+|++++++||| ||++++..... . ...++.++
T Consensus 227 ~~~-~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 304 (334)
T 2ip2_A 227 LQE-VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG-DGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEE 304 (334)
T ss_dssp TTC-CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT-TCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHH
T ss_pred CCC-CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHH
Confidence 321 23679999999999999988877799999999999 99999874210 0 12235899
Q ss_pred HHHHHHhcCCcEEEeee
Q 019282 307 CTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~ 323 (343)
+.++++++||++++...
T Consensus 305 ~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 305 VVDLLGRGGFAVERIVD 321 (334)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999999887654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=116.87 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+...+.+.+.+.++.+|||||||+|.++..+++.++.. .++++|.++.+.+.++++.. .+.. .++ ++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQT--TAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSE--EEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTG
T ss_pred HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCC--eEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHh
Confidence 4455666666788889999999999999999999866444 45555555555555554433 2332 244 55543322
Q ss_pred cCCCCC-CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 246 FTKFGS-GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 246 l~~~~~-~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.++. .++||+|++...++| ..+++++.++||| ||++++..... .....+.+.+++.|++.......
T Consensus 87 --~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~-gG~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 87 --AFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPV-GGRLVANAVTV----ESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp --GGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCT-TCEEEEEECSH----HHHHHHHHHHHHHCCEEEEEEEE
T ss_pred --hhhccCCCCCEEEECCcccH------HHHHHHHHHhcCC-CCEEEEEeecc----ccHHHHHHHHHHcCCeeEEEEee
Confidence 1221 278999999999987 2389999999999 99999875211 12566788899999988775544
Q ss_pred cc
Q 019282 325 DS 326 (343)
Q Consensus 325 ~~ 326 (343)
..
T Consensus 154 ~~ 155 (178)
T 3hm2_A 154 HE 155 (178)
T ss_dssp EE
T ss_pred cC
Confidence 33
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=128.45 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=90.1
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC--CCC----------------------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG--LLH---------------------- 233 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~--~~~---------------------- 233 (343)
+..++.+|||||||+|.++..++.. .... ++++|.++.+.+.+++..+.. ..+
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~--v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQD--ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEE--EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcc--eeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHH
Confidence 5567889999999999887655542 1123 444555555555444332111 000
Q ss_pred ----CCcE-EEecccCCcCCCC--CCCceeEEEEccccccCC-c-hHHHHHHHHHHhccCCCCcEEEEEeccc-------
Q 019282 234 ----KRPI-IVRGEDMDFTKFG--SGVVYDLIYASAVFLHMP-D-KLVWVGLERLASKLRPYDGRIFVSHNIK------- 297 (343)
Q Consensus 234 ----~~~~-~~~~~~~dl~~~~--~~~~fDlIvs~~v~~hl~-~-~~~~~~L~~l~r~LkP~GG~lvi~~~~~------- 297 (343)
..+. ++.++..+...+. ..++||+|+++.++||+. + +....++++++++||| ||.|++.....
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP-GG~li~~~~~~~~~~~~g 207 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP-GGHLVTTVTLRLPSYMVG 207 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCCEEEET
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC-CcEEEEEEeecCccceeC
Confidence 0111 4444333211111 246899999999999963 2 3445699999999999 99999884211
Q ss_pred ---cc-cCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 298 ---FC-SRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 298 ---~~-~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+. ..++.+++.+.|+++||+++.....
T Consensus 208 ~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 208 KREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 11 1246899999999999999887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=121.73 Aligned_cols=113 Identities=13% Similarity=0.212 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~ 248 (343)
++.+......+++.+|||+|||+|.++..+++. +..++++|.++.+.+.+++... .+. ++.++.++..+
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~--- 99 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLE--- 99 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGG---
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEECChhh---
Confidence 344444455567789999999999999999884 3445555555555555554332 222 46666654333
Q ss_pred CCCCCceeEEEEc-cccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYAS-AVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~-~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....++||+|++. ..++|+.......++++++++||| ||.+++.
T Consensus 100 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~li~~ 144 (252)
T 1wzn_A 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFITD 144 (252)
T ss_dssp CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 3335689999987 456666666667799999999999 9999864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-13 Score=128.57 Aligned_cols=145 Identities=24% Similarity=0.201 Sum_probs=103.1
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
..+.+...+.++.+|||||||+|.++..+++..+...++++|+ +..... +++... .+. ..++.++.++..+ .+
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~--a~~~~~~~~~-~~~v~~~~~d~~~--~~ 246 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDT--ARSYLKDEGL-SDRVDVVEGDFFE--PL 246 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHH--HHHHHHHTTC-TTTEEEEECCTTS--CC
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHH--HHHHHHhcCC-CCceEEEeCCCCC--CC
Confidence 3445556778889999999999999999999876555555554 444333 333322 333 2356777663322 12
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--cc-------------------ccCCCHHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--KF-------------------CSRLGGEECT 308 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--~~-------------------~~~~~~~~l~ 308 (343)
...||+|++..++||++++....++++++++||| ||++++.... +. ...++.+++.
T Consensus 247 --~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (360)
T 1tw3_A 247 --PRKADAIILSFVLLNWPDHDAVRILTRCAEALEP-GGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWD 323 (360)
T ss_dssp --SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE-EEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHH
T ss_pred --CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHH
Confidence 2359999999999999988766799999999999 9999887533 10 1123489999
Q ss_pred HHHHhcCCcEEEeeec
Q 019282 309 KRLTSLGLEYIGKKTH 324 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~ 324 (343)
++++++||+++.....
T Consensus 324 ~ll~~aGf~~~~~~~~ 339 (360)
T 1tw3_A 324 GLAASAGLVVEEVRQL 339 (360)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCeEEEEEeC
Confidence 9999999999876654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=122.14 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
+.+|||||||+|.++..++. . +++|+++ .+.+.+++. ++.++.++..+++ + .+++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~----~--~~vD~s~--~~~~~a~~~--------~~~~~~~d~~~~~-~-~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI----K--IGVEPSE--RMAEIARKR--------GVFVLKGTAENLP-L-KDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC----C--EEEESCH--HHHHHHHHT--------TCEEEECBTTBCC-S-CTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHH----H--hccCCCH--HHHHHHHhc--------CCEEEEcccccCC-C-CCCCeeEEEEc
Confidence 78999999999999987765 2 5555555 444444432 3445555433333 2 35689999999
Q ss_pred cccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHHHHHHhcCCcEEEee
Q 019282 262 AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 262 ~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
.+++|+++... +|+++.++|+| ||.+++..... ....++.+++.++|+++||+++...
T Consensus 110 ~~l~~~~~~~~--~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 110 TTICFVDDPER--ALKEAYRILKK-GGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp SCGGGSSCHHH--HHHHHHHHEEE-EEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred chHhhccCHHH--HHHHHHHHcCC-CcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 99999988755 99999999999 99999873211 1122458999999999999998866
Q ss_pred ec
Q 019282 323 TH 324 (343)
Q Consensus 323 ~~ 324 (343)
..
T Consensus 187 ~~ 188 (219)
T 1vlm_A 187 QT 188 (219)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=127.43 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC--CC------------C-----------
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL--LH------------K----------- 234 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~--~~------------~----------- 234 (343)
.++.+|||||||+|..+..++. .... .++++|.++.+.+.+++...... .+ .
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~-~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 146 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSAC-SHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 146 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG-GGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhc-cCCC--eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence 3678999999999995543333 2223 46666666666665544221100 00 0
Q ss_pred ----CcEEEecccCCcCCC----CCCCceeEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEecc--c-----
Q 019282 235 ----RPIIVRGEDMDFTKF----GSGVVYDLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNI--K----- 297 (343)
Q Consensus 235 ----~~~~~~~~~~dl~~~----~~~~~fDlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~--~----- 297 (343)
...++.++..+...+ ..+++||+|+++.+++|+... ....+|++++++||| ||+|++.... .
T Consensus 147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp-GG~l~~~~~~~~~~~~~~ 225 (289)
T 2g72_A 147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP-GGHLLLIGALEESWYLAG 225 (289)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEEESCCEEEET
T ss_pred HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEEecCcceEEcC
Confidence 012222222221111 124679999999999995432 445699999999999 9999986311 1
Q ss_pred ---c-ccCCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 298 ---F-CSRLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 298 ---~-~~~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
+ ...++.+++.++|+++||+++......
T Consensus 226 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 226 EARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 1 223469999999999999998866543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=127.71 Aligned_cols=114 Identities=15% Similarity=-0.000 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+.+.+.+.++.+|||||||+|.++..+++. +..++++|.++.|.+.++++.... .+ ... ..++..
T Consensus 33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~----g~~V~gvD~S~~ml~~Ar~~~~~~----~v-~~~--~~~~~~ 101 (261)
T 3iv6_A 33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER----GASVTVFDFSQRMCDDLAEALADR----CV-TID--LLDITA 101 (261)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTSSS----CC-EEE--ECCTTS
T ss_pred HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHhc----cc-eee--eeeccc
Confidence 4455666778889999999999999999999983 445666666667776666543221 11 111 122221
Q ss_pred ---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 249 ---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 249 ---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
...+++||+|+++.+++|+........+.++.++| | ||+++++..
T Consensus 102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P-GG~l~lS~~ 149 (261)
T 3iv6_A 102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-G-SGTVRASVK 149 (261)
T ss_dssp CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T-TSEEEEEEE
T ss_pred ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c-CcEEEEEec
Confidence 11256899999999999998877778999999999 9 999998853
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=122.28 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=91.8
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHH--HHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAF--RYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~--a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
.+.++.+|||||||+|.++..+++..+...++++|+++.++.... +++....... .++.++.++..+++ + .++.
T Consensus 24 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~-~-~~~~- 99 (218)
T 3mq2_A 24 RSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLP-P-LSGV- 99 (218)
T ss_dssp HTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCC-S-CCCE-
T ss_pred hccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCC-C-CCCC-
Confidence 466788999999999999999999776666667777665444221 2222221111 25667776555544 2 2334
Q ss_pred eEEEEc---ccc--ccCCchHHHHHHHHHHhccCCCCcEEEEEecccc----------ccCCC----HHHHHHHHHhcCC
Q 019282 256 DLIYAS---AVF--LHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF----------CSRLG----GEECTKRLTSLGL 316 (343)
Q Consensus 256 DlIvs~---~v~--~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~----------~~~~~----~~~l~~~L~~aGf 316 (343)
|.|+.. ... +|++++.. ++++++++||| ||++++..+... ...+. .+.+...++++||
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 176 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPE--MLRGMAAVCRP-GASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGW 176 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSH--HHHHHHHTEEE-EEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTE
T ss_pred CEEEEEccchhhhhhhhccHHH--HHHHHHHHcCC-CcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCC
Confidence 666532 233 26666544 89999999999 999998742111 01112 4557889999999
Q ss_pred cEEEeeecccc
Q 019282 317 EYIGKKTHDSL 327 (343)
Q Consensus 317 ~~v~~~~~~~l 327 (343)
++......+.-
T Consensus 177 ~i~~~~~~~~~ 187 (218)
T 3mq2_A 177 KLADCRYLEPE 187 (218)
T ss_dssp EEEEEEEECHH
T ss_pred Cceeeeccchh
Confidence 99887765543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=118.56 Aligned_cols=138 Identities=17% Similarity=0.117 Sum_probs=92.9
Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
..++++.+|||+||| +|.++..+++.. ...++++|+++.. .+.++++.. .+. ++.++.++...+..+. +++
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~--~~~a~~~~~~~~~---~v~~~~~d~~~~~~~~-~~~ 123 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEF--FEYARRNIERNNS---NVRLVKSNGGIIKGVV-EGT 123 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHH--HHHHHHHHHHTTC---CCEEEECSSCSSTTTC-CSC
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHH--HHHHHHHHHHhCC---CcEEEeCCchhhhhcc-cCc
Confidence 457789999999999 999999999865 3455566655544 444444333 333 5667766443344443 579
Q ss_pred eeEEEEccccccCCchH-----------------HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc
Q 019282 255 YDLIYASAVFLHMPDKL-----------------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~-----------------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343)
||+|+++..+++.++.. ...+++++.++||| ||++++...... ...+++.+.++++||+
T Consensus 124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~---~~~~~~~~~l~~~g~~ 199 (230)
T 3evz_A 124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP-GGKVALYLPDKE---KLLNVIKERGIKLGYS 199 (230)
T ss_dssp EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEE-EEEEEEEEESCH---HHHHHHHHHHHHTTCE
T ss_pred eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC-CeEEEEEecccH---hHHHHHHHHHHHcCCc
Confidence 99999998776654321 24589999999999 999988642111 1257788899999998
Q ss_pred EEEeeecc
Q 019282 318 YIGKKTHD 325 (343)
Q Consensus 318 ~v~~~~~~ 325 (343)
+...+...
T Consensus 200 ~~~~~~~~ 207 (230)
T 3evz_A 200 VKDIKFKV 207 (230)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
Confidence 77665433
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=118.20 Aligned_cols=140 Identities=8% Similarity=0.004 Sum_probs=84.7
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..++++.+|||+|||+|.++..+++. +..++++|.++.+.+.++++.. .+. .++.++.++..++..+. +++|
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~la~~----~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~~~~~l~~~~-~~~f 90 (185)
T 3mti_A 18 EVLDDESIVVDATMGNGNDTAFLAGL----SKKVYAFDVQEQALGKTSQRLSDLGI--ENTELILDGHENLDHYV-REPI 90 (185)
T ss_dssp TTCCTTCEEEESCCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHHTC--CCEEEEESCGGGGGGTC-CSCE
T ss_pred HhCCCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCcHHHHHhhc-cCCc
Confidence 46778999999999999999999985 3345555555555555554433 333 35666665444443343 6789
Q ss_pred eEEEEccccccC-------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHH---HhcCCcEEEeeec
Q 019282 256 DLIYASAVFLHM-------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRL---TSLGLEYIGKKTH 324 (343)
Q Consensus 256 DlIvs~~v~~hl-------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L---~~aGf~~v~~~~~ 324 (343)
|+|+++..+.+. ........++++.++||| ||++++........... .+.+.+++ ...+|.+......
T Consensus 91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV-GGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPL 169 (185)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHEEE-EEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEES
T ss_pred CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCC-CcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhh
Confidence 999987322221 113344588999999999 99998874221111111 23344444 4456877766554
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=124.84 Aligned_cols=145 Identities=16% Similarity=0.068 Sum_probs=106.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
...+.+..++.+..+|||||||+|.++..+++.+|....++.|+ . .+.+.+++....+. ..++.++.+ |+.+.
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl--p-~v~~~a~~~~~~~~-~~rv~~~~g---D~~~~ 240 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI--P-EVVWTAKQHFSFQE-EEQIDFQEG---DFFKD 240 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC--H-HHHHHHHHHSCC---CCSEEEEES---CTTTS
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC--H-HHHHHHHHhhhhcc-cCceeeecC---ccccC
Confidence 34555556777788999999999999999999998776666554 2 23444444333333 347777776 44322
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc---c----c--------------ccCCCHHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI---K----F--------------CSRLGGEECT 308 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~---~----~--------------~~~~~~~~l~ 308 (343)
+ ...+|+|++..++|+++++....+|+++++.|+| ||+++|.+.. + . ...++.++|.
T Consensus 241 ~-~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p-gg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~ 318 (353)
T 4a6d_A 241 P-LPEADLYILARVLHDWADGKCSHLLERIYHTCKP-GGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYH 318 (353)
T ss_dssp C-CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT-TCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred C-CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC-CCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 2 3458999999999999999888899999999999 9999987421 0 0 1223589999
Q ss_pred HHHHhcCCcEEEeee
Q 019282 309 KRLTSLGLEYIGKKT 323 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~ 323 (343)
++|+++||+.++...
T Consensus 319 ~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 319 MLLSSAGFRDFQFKK 333 (353)
T ss_dssp HHHHHHTCEEEEEEC
T ss_pred HHHHHCCCceEEEEE
Confidence 999999999988654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-14 Score=129.72 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=86.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..+|.+|||||||+|..+..+++..+ ..++++|+ ++.+.+.++++..... ..+.++.++..++.....+++||.|
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~--~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i 132 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIEC--NDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEEC--CHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeC--CHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceE
Confidence 35788999999999999998887433 34445554 5556665565443221 2445555544443322246789999
Q ss_pred EE-----ccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----ccccCCC------HHHHHHHHHhcCCcEEEee
Q 019282 259 YA-----SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----KFCSRLG------GEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 259 vs-----~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----~~~~~~~------~~~l~~~L~~aGf~~v~~~ 322 (343)
++ ....+|+++... ++++++|+||| ||+|++.... .....+. .+.+...|.++||+++...
T Consensus 133 ~~D~~~~~~~~~~~~~~~~--~~~e~~rvLkP-GG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i~ 208 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNF--IKNHAFRLLKP-GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIR 208 (236)
T ss_dssp EECCCCCBGGGTTTHHHHH--HHHTHHHHEEE-EEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGEE
T ss_pred EEeeeecccchhhhcchhh--hhhhhhheeCC-CCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEEE
Confidence 75 445556666555 99999999999 9999875311 1111111 4556667889999865433
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=126.55 Aligned_cols=139 Identities=13% Similarity=0.080 Sum_probs=99.7
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
...+.+... +.+..+|||||||+|.++..+++.++...++++|+ +.+.+.+++ ..++.++.++..+ .
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------~~~v~~~~~d~~~--~ 258 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL---PHVIQDAPA-------FSGVEHLGGDMFD--G 258 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCC-------CTTEEEEECCTTT--C
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh---HHHHHhhhh-------cCCCEEEecCCCC--C
Confidence 344554444 66778999999999999999999887665555554 334432221 1356677663332 2
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCCC
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRLG 303 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~~ 303 (343)
+ +. . |+|++..++||++++....+|++++++||| ||+++|.+... ....++
T Consensus 259 ~-p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt 334 (368)
T 3reo_A 259 V-PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPD-HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT 334 (368)
T ss_dssp C-CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCT-TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred C-CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence 3 23 3 999999999999998877899999999999 99998873110 012234
Q ss_pred HHHHHHHHHhcCCcEEEeeec
Q 019282 304 GEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.+++.++++++||+.++....
T Consensus 335 ~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 335 EKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp HHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHCCCeeeEEEEe
Confidence 899999999999999886654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=118.40 Aligned_cols=145 Identities=13% Similarity=0.005 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+...+...+.+.++.+|||||||+|.++..+++. ... ++++|.++.+.+.++++.+ .+.. .++.++.++..
T Consensus 40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~--v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~ 114 (204)
T 3njr_A 40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGR--AITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAP 114 (204)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCE--EEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTT
T ss_pred cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCE--EEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchh
Confidence 3455556666778889999999999999999999985 334 4455555555555554433 3332 25667776544
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+.. .....||+|++...+ + .. +++++.++||| ||++++..... -...++.+.+++.|+++......
T Consensus 115 ~~~--~~~~~~D~v~~~~~~----~--~~-~l~~~~~~Lkp-gG~lv~~~~~~----~~~~~~~~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 115 AAL--ADLPLPEAVFIGGGG----S--QA-LYDRLWEWLAP-GTRIVANAVTL----ESETLLTQLHARHGGQLLRIDIA 180 (204)
T ss_dssp GGG--TTSCCCSEEEECSCC----C--HH-HHHHHHHHSCT-TCEEEEEECSH----HHHHHHHHHHHHHCSEEEEEEEE
T ss_pred hhc--ccCCCCCEEEECCcc----c--HH-HHHHHHHhcCC-CcEEEEEecCc----ccHHHHHHHHHhCCCcEEEEEee
Confidence 422 223579999987644 1 23 89999999999 99999875211 12567788899999998887655
Q ss_pred ccccc
Q 019282 325 DSLLF 329 (343)
Q Consensus 325 ~~l~~ 329 (343)
...+.
T Consensus 181 ~~~~~ 185 (204)
T 3njr_A 181 QAEPL 185 (204)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 44333
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=117.14 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=91.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
++++ +|||||||+|.++..+++. +..++++|.++.+.+.+++... .+. ++.+..++..+++ + .+++||+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~-~-~~~~fD~ 97 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFD-I-VADAWEG 97 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT----TCEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBS-C-CTTTCSE
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcC-C-CcCCccE
Confidence 4566 9999999999999998873 3456666666666666554432 222 4555655433332 2 3578999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------------cccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------------FCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------------~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
|+++ +.|++......+++++.++||| ||.+++..... ....++++++.++++ ||+++.....
T Consensus 98 v~~~--~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 98 IVSI--FCHLPSSLRQQLYPKVYQGLKP-GGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp EEEE--CCCCCHHHHHHHHHHHHTTCCS-SEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred EEEE--hhcCCHHHHHHHHHHHHHhcCC-CcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 9995 4466655666799999999999 99999874211 112345999999998 9999886653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=115.41 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
+++.+|||||||+|.++..+++..+...++++|+++.....+ +++.. .+. .++.++.++..++.+...+++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a--~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA--LDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH--HHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHH--HHHHHHcCC--CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 357799999999999999999987766666666666555444 33322 233 3567777765554432235789999
Q ss_pred EEccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee--c----cc
Q 019282 259 YASAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT--H----DS 326 (343)
Q Consensus 259 vs~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~--~----~~ 326 (343)
+++....+.... ....+++++.++||| ||.+++....... .+.+.+.++++||+.+.... + ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 190 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKTDNRGL----FEYSLVSFSQYGMKLNGVWLDLHASDFEG 190 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEESCHHH----HHHHHHHHHHHTCEEEEEESSGGGSCCCC
T ss_pred EEECCCCccccchhhhccCCHHHHHHHHHHcCC-CcEEEEEeCCHHH----HHHHHHHHHHCCCeeeeccccccccCCCC
Confidence 998655332211 113489999999999 9999987532111 35677788999999876542 1 12
Q ss_pred cccchhHHhhh
Q 019282 327 LLFNHYEIWFE 337 (343)
Q Consensus 327 l~~~~~e~w~~ 337 (343)
.....||.++.
T Consensus 191 ~~~t~~e~~~~ 201 (214)
T 1yzh_A 191 NVMTEYEQKFS 201 (214)
T ss_dssp CCCCHHHHHTG
T ss_pred CCCcHHHHHHH
Confidence 23456776654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=122.62 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCC-CCCCCcEEEecccC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQG-LLHKRPIIVRGEDM 244 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~-~~~~~~~~~~~~~~ 244 (343)
..+++.+... ...++.+|||||||+|.++..+++.+ +...++++|+++ .+.+.++++.... ....++.++.++..
T Consensus 23 ~~~~~~l~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEY-HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA--TMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHH-CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCH--HHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHH-hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 3456666654 34678899999999999999999865 445555555554 5555445433321 12336777776555
Q ss_pred CcCCCCC-----CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 245 DFTKFGS-----GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 245 dl~~~~~-----~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
+++ +.. .++||+|++..++||+ +... ++++++++||| ||.+++
T Consensus 100 ~~~-~~~~~~~~~~~fD~V~~~~~l~~~-~~~~--~l~~~~~~Lkp-gG~l~i 147 (299)
T 3g5t_A 100 DFK-FLGADSVDKQKIDMITAVECAHWF-DFEK--FQRSAYANLRK-DGTIAI 147 (299)
T ss_dssp CCG-GGCTTTTTSSCEEEEEEESCGGGS-CHHH--HHHHHHHHEEE-EEEEEE
T ss_pred hCC-ccccccccCCCeeEEeHhhHHHHh-CHHH--HHHHHHHhcCC-CcEEEE
Confidence 443 211 2789999999999999 6544 99999999999 999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=124.70 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=100.9
Q ss_pred HHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
....+.+... +.+..+|||||||+|.++..+++.++...++++|+ +.+.+.+++ ..++.++.++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------~~~v~~~~~D~~~-- 255 (364)
T 3p9c_A 188 ITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL---PHVISEAPQ-------FPGVTHVGGDMFK-- 255 (364)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCC-------CTTEEEEECCTTT--
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC---HHHHHhhhh-------cCCeEEEeCCcCC--
Confidence 3444555555 77788999999999999999999887766555555 334432221 1366777663332
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------------cccCC
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------------FCSRL 302 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------------~~~~~ 302 (343)
.+ +. . |+|++..++|+++++....+|++++++||| ||+++|.+... ....+
T Consensus 256 ~~-p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 331 (364)
T 3p9c_A 256 EV-PS-G-DTILMKWILHDWSDQHCATLLKNCYDALPA-HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331 (364)
T ss_dssp CC-CC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCT-TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred CC-CC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccC
Confidence 23 23 3 999999999999998877899999999999 99998863110 01123
Q ss_pred CHHHHHHHHHhcCCcEEEeeec
Q 019282 303 GGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+.++|.++++++||+.++....
T Consensus 332 t~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 332 YEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp BHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEEc
Confidence 3899999999999999886643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=119.51 Aligned_cols=137 Identities=15% Similarity=0.199 Sum_probs=90.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
..+++.+|||+|||+|..+..++... +..++++|.++.+.+.+++...... .++.+..++..+++ + .+++||+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-~-~~~~fD~ 92 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVED---GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLP-F-KDESMSF 92 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHHT---TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCC-S-CTTCEEE
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCC-C-CCCceeE
Confidence 45678899999999999854444332 2344455555555554444322111 13455555433332 2 3578999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------------c----------ccCCCHHHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------------F----------CSRLGGEECTKRLT 312 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------------~----------~~~~~~~~l~~~L~ 312 (343)
|++..+++|++......++++++++||| ||++++..... + ...++.+++.+.+.
T Consensus 93 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 171 (209)
T 2p8j_A 93 VYSYGTIFHMRKNDVKEAIDEIKRVLKP-GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFK 171 (209)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTT
T ss_pred EEEcChHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHh
Confidence 9999999999766667799999999999 99999873110 0 01234888999999
Q ss_pred hcCCcEEEee
Q 019282 313 SLGLEYIGKK 322 (343)
Q Consensus 313 ~aGf~~v~~~ 322 (343)
++||......
T Consensus 172 ~~g~~~~~~~ 181 (209)
T 2p8j_A 172 DMKVLFKEDR 181 (209)
T ss_dssp TSEEEEEEEE
T ss_pred hcCceeeeee
Confidence 9998776544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=123.50 Aligned_cols=143 Identities=14% Similarity=0.070 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+.... ..++.+|||||||+|.++..+++.. .. .++++|.++.+.+.++++.... ..++.++.++..++.
T Consensus 48 ~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~-~~--~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 48 PYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP-ID--EHWIIECNDGVFQRLRDWAPRQ--THKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSC-EE--EEEEEECCHHHHHHHHHHGGGC--SSEEEEEESCHHHHG
T ss_pred HHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcC-CC--eEEEEcCCHHHHHHHHHHHHhc--CCCeEEEecCHHHhh
Confidence 3444444432 4678899999999999999997632 12 4555555556666555543321 125666666444441
Q ss_pred -CCCCCCceeEEEE-cccc--ccCCchHHHHHHHHHHhccCCCCcEEEEEecccc----ccCCC------HHHHHHHHHh
Q 019282 248 -KFGSGVVYDLIYA-SAVF--LHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF----CSRLG------GEECTKRLTS 313 (343)
Q Consensus 248 -~~~~~~~fDlIvs-~~v~--~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~----~~~~~------~~~l~~~L~~ 313 (343)
.+ .+++||+|++ ...+ +.........++++++++||| ||++++...... ...+. .+.....|.+
T Consensus 122 ~~~-~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (236)
T 1zx0_A 122 PTL-PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 199 (236)
T ss_dssp GGS-CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHH
T ss_pred ccc-CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC-CeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHH
Confidence 13 3579999999 4443 222223334579999999999 999987632111 11111 3555678899
Q ss_pred cCCcE
Q 019282 314 LGLEY 318 (343)
Q Consensus 314 aGf~~ 318 (343)
+||+.
T Consensus 200 aGF~~ 204 (236)
T 1zx0_A 200 AGFRR 204 (236)
T ss_dssp TTCCG
T ss_pred CCCCC
Confidence 99984
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=112.27 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+++...+...+.+.++.+|||||||+|.++..+++..+...++++|+++.....+ +++.. .+. .++.++.++..
T Consensus 25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a--~~~~~~~~~--~~v~~~~~d~~ 100 (204)
T 3e05_A 25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFI--RDNLKKFVA--RNVTLVEAFAP 100 (204)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHH--HHHHHHHTC--TTEEEEECCTT
T ss_pred hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH--HHHHHHhCC--CcEEEEeCChh
Confidence 34555667777888999999999999999999999987656666666666554444 43322 233 35666665433
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343)
+.. ...+.||+|++...++ + ...+++++.++||| ||++++..... ...+++.+.++++||.
T Consensus 101 ~~~--~~~~~~D~i~~~~~~~---~--~~~~l~~~~~~Lkp-gG~l~~~~~~~----~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 101 EGL--DDLPDPDRVFIGGSGG---M--LEEIIDAVDRRLKS-EGVIVLNAVTL----DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp TTC--TTSCCCSEEEESCCTT---C--HHHHHHHHHHHCCT-TCEEEEEECBH----HHHHHHHHHHHHTTCE
T ss_pred hhh--hcCCCCCEEEECCCCc---C--HHHHHHHHHHhcCC-CeEEEEEeccc----ccHHHHHHHHHHCCCc
Confidence 222 1236799999988775 2 23489999999999 99999874211 1267788899999983
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=118.30 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=92.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC---CCCc
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG---SGVV 254 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~ 254 (343)
.+.++.+|||||||+|.++..+++... .++++|+++ .+.+.++++. ...++.++.++..++.... ....
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~--~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 124 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSK--SALEIAAKEN----TAANISYRLLDGLVPEQAAQIHSEIG 124 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCH--HHHHHHHHHS----CCTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCH--HHHHHHHHhC----cccCceEEECcccccccccccccccC
Confidence 467888999999999999999998654 455555555 4454444432 1225666665433322100 1124
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc----------------------------ccCCCHHH
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF----------------------------CSRLGGEE 306 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~----------------------------~~~~~~~~ 306 (343)
||+|++..++||+++.....++++++++||| ||++++...... ...++.++
T Consensus 125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (245)
T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGK-QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAED 203 (245)
T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTT-TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHH
T ss_pred ccEEEEcchhhcCCHHHHHHHHHHHHHHcCC-CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHH
Confidence 9999999999999976666799999999999 999877631110 01234788
Q ss_pred HHHHHHhcCCcEEEeee
Q 019282 307 CTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~ 323 (343)
+.+.+ +||+++....
T Consensus 204 ~~~~~--aGf~~~~~~~ 218 (245)
T 3ggd_A 204 IELYF--PDFEILSQGE 218 (245)
T ss_dssp HHHHC--TTEEEEEEEC
T ss_pred HHHHh--CCCEEEeccc
Confidence 88888 9999987543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=115.12 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.+.+.+.+ .++++.+|||||||+|.++..+++..+ .++++|+++ .+.+.+++...... .++.++.++..++
T Consensus 26 ~~~~~~l~~--~~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~--~~~~~a~~~~~~~~--~~~~~~~~d~~~~ 97 (227)
T 1ve3_A 26 ETLEPLLMK--YMKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISE--DMIRKAREYAKSRE--SNVEFIVGDARKL 97 (227)
T ss_dssp HHHHHHHHH--SCCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCH--HHHHHHHHHHHHTT--CCCEEEECCTTSC
T ss_pred HHHHHHHHH--hcCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCH--HHHHHHHHHHHhcC--CCceEEECchhcC
Confidence 334555543 345588999999999999999988543 455555554 44444444322111 2566666644333
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+ + .+++||+|++..++++........++++++++||| ||++++.
T Consensus 98 ~-~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~ 141 (227)
T 1ve3_A 98 S-F-EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP-SGKFIMY 141 (227)
T ss_dssp C-S-CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred C-C-CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 2 2 35689999999995555444455699999999999 9999886
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=115.82 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~f 255 (343)
+.++++.+|||||||+|..+..+++..+.. .++++|.++.+.+...+.... . .++.++.++..+... ....++|
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~--~V~gvD~s~~~l~~~~~~a~~-~--~~v~~~~~d~~~~~~~~~~~~~f 127 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEG--IIYAVEYSAKPFEKLLELVRE-R--NNIIPLLFDASKPWKYSGIVEKV 127 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTS--EEEEECCCHHHHHHHHHHHHH-C--SSEEEECSCTTCGGGTTTTCCCE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHhc-C--CCeEEEEcCCCCchhhcccccce
Confidence 356788999999999999999999876533 455555555433211111111 1 144555543333211 1124789
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc-cCCCHHHHH----HHHHhcCCcEEEeeeccccccc
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC-SRLGGEECT----KRLTSLGLEYIGKKTHDSLLFN 330 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~-~~~~~~~l~----~~L~~aGf~~v~~~~~~~l~~~ 330 (343)
|+|++.. .++ .....++++++++||| ||++++....... ....++++. +.|+++ |++++.....++...
T Consensus 128 D~V~~~~-~~~---~~~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~ 201 (210)
T 1nt2_A 128 DLIYQDI-AQK---NQIEILKANAEFFLKE-KGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRD 201 (210)
T ss_dssp EEEEECC-CST---THHHHHHHHHHHHEEE-EEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTT
T ss_pred eEEEEec-cCh---hHHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCC
Confidence 9999973 222 2233368999999999 9999988532211 122344442 337888 999987766554444
Q ss_pred hh
Q 019282 331 HY 332 (343)
Q Consensus 331 ~~ 332 (343)
||
T Consensus 202 h~ 203 (210)
T 1nt2_A 202 HI 203 (210)
T ss_dssp EE
T ss_pred cE
Confidence 43
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=113.90 Aligned_cols=117 Identities=20% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+ + . ..++++|.++.+.+.+++.. .++.++.++..+++ + .+++||+|+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l----~-~-~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~-~~~~fD~v~ 100 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL----P-Y-PQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALP-F-PGESFDVVL 100 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC----C-C-SEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCC-S-CSSCEEEEE
T ss_pred CCCCeEEEECCCCCHhHHhC----C-C-CeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCC-C-CCCcEEEEE
Confidence 37889999999999998766 1 2 04555555556665555422 24555655433333 2 357899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--------------------cccCCCHHHHHHHHHhcC
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--------------------FCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--------------------~~~~~~~~~l~~~L~~aG 315 (343)
+..+++|+++... +++++.++||| ||.+++..... ....++.+++.++|+ |
T Consensus 101 ~~~~l~~~~~~~~--~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVEDVER--VLLEARRVLRP-GGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCSCHHH--HHHHHHHHEEE-EEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcCCHHH--HHHHHHHHcCC-CCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999987765 99999999999 99999873211 122346899999888 7
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-13 Score=115.92 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+.+.+... ++++.+|||||||+|.++..+++. +...++++|+++.. .+.++++.. .+. . ++.+..+
T Consensus 47 ~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~--~~~a~~~~~~~~~-~-~v~~~~~--- 116 (205)
T 3grz_A 47 TQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDES--MTAAEENAALNGI-Y-DIALQKT--- 116 (205)
T ss_dssp HHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHH--HHHHHHHHHHTTC-C-CCEEEES---
T ss_pred HHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHH--HHHHHHHHHHcCC-C-ceEEEec---
Confidence 44455555433 567889999999999999998873 33455566665544 444444333 233 2 2666665
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
|+.+. .+++||+|+++..++++ ..+++++.++||| ||++++..... ...+++.+.++++||+.+....
T Consensus 117 d~~~~-~~~~fD~i~~~~~~~~~-----~~~l~~~~~~L~~-gG~l~~~~~~~----~~~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 117 SLLAD-VDGKFDLIVANILAEIL-----LDLIPQLDSHLNE-DGQVIFSGIDY----LQLPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp STTTT-CCSCEEEEEEESCHHHH-----HHHGGGSGGGEEE-EEEEEEEEEEG----GGHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccc-CCCCceEEEECCcHHHH-----HHHHHHHHHhcCC-CCEEEEEecCc----ccHHHHHHHHHHcCCceEEeec
Confidence 33333 25799999999888664 3489999999999 99999863211 1367889999999999887554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=124.29 Aligned_cols=138 Identities=15% Similarity=0.062 Sum_probs=98.5
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
...+.+... ++++.+|||||||+|.++..+++.++.. .++++|. +.+.+.+++ . .++.++.+ |+.+
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~-~~~~~~a~~-----~--~~v~~~~~---d~~~ 263 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI--KGINFDL-PQVIENAPP-----L--SGIEHVGG---DMFA 263 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEEC-HHHHTTCCC-----C--TTEEEEEC---CTTT
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCC--eEEEeCh-HHHHHhhhh-----c--CCCEEEeC---Cccc
Confidence 345555554 6778899999999999999999987655 4554454 344443321 1 24666665 3332
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec---cc-c--------------------ccCCCH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN---IK-F--------------------CSRLGG 304 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~---~~-~--------------------~~~~~~ 304 (343)
+... ||+|++..++||++++....+|++++++||| ||++++... .. . ...++.
T Consensus 264 -~~~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~ 340 (372)
T 1fp1_D 264 -SVPQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSP-NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTE 340 (372)
T ss_dssp -CCCC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEH
T ss_pred -CCCC-CCEEEEecccccCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCH
Confidence 1223 9999999999999998866799999999999 999988731 00 0 111248
Q ss_pred HHHHHHHHhcCCcEEEeee
Q 019282 305 EECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 305 ~~l~~~L~~aGf~~v~~~~ 323 (343)
+++.++++++||++++...
T Consensus 341 ~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 341 KQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 8999999999999987664
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=126.97 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCC--C--CcEEEeccc------CCcCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLH--K--RPIIVRGED------MDFTK 248 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~--~--~~~~~~~~~------~dl~~ 248 (343)
+++.+|||||||+|..+..++.. ....++++|.+..+.+.|+++.. .+... . .+.+...+. .++.+
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~ 123 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE 123 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred CCCCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc
Confidence 35789999999999876655542 22345555666666665555432 22110 0 022333211 11221
Q ss_pred CCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEec-----------------------cc-------
Q 019282 249 FGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHN-----------------------IK------- 297 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~-----------------------~~------- 297 (343)
..++++||+|+|..++|++ .......+|++++++||| ||+++++.. ..
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp-GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 202 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS-GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKI 202 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE-EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEE
T ss_pred cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccc
Confidence 1235799999999999876 223345799999999999 999988621 00
Q ss_pred -------ccc----------CCCHHHHHHHHHhcCCcEEEeeecc
Q 019282 298 -------FCS----------RLGGEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 298 -------~~~----------~~~~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
+.. -+.++++.++++++||+.+....+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 203 ADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp ETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred cccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence 000 0126889999999999999887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-13 Score=117.89 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
++++.+|||||||+|.++..+++. +..++++|.++.+.+.++++ ..++.++.++..+...+..+++||+|
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ----AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEE
Confidence 467889999999999999999885 33455555555666655543 12466666644222223226799999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeeccc-cccchhHHh
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDS-LLFNHYEIW 335 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~~-l~~~~~e~w 335 (343)
++.. +.. .++++++++||| ||.++... .....+++.+.++++||+.+....... ..++.++.|
T Consensus 116 ~~~~------~~~--~~l~~~~~~Lkp-gG~l~~~~-----~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 179 (226)
T 3m33_A 116 VSRR------GPT--SVILRLPELAAP-DAHFLYVG-----PRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDW 179 (226)
T ss_dssp EEES------CCS--GGGGGHHHHEEE-EEEEEEEE-----SSSCCTHHHHHHHHTTCEEEEEEEEEEEEEECSHHHH
T ss_pred EeCC------CHH--HHHHHHHHHcCC-CcEEEEeC-----CcCCHHHHHHHHHHCCCeEEEEEeeeecccCcCHHHH
Confidence 9972 222 278999999999 99998221 223467889999999999887654322 334445544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=116.43 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=92.0
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCC
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGV 253 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~ 253 (343)
...+.++.+|||+|||+|.++..+++.+ +...++++|+++ .+.+.+.+..... .++.++.++..+...++ .++
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~--~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSH--RSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCH--HHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence 3567888999999999999999999876 334455555544 3322222211111 25666666444321111 356
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc-ccCCC-----HHHHHHHHHhcCCcEEEeeecccc
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF-CSRLG-----GEECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-~~~~~-----~~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
+||+|++... .......++.++.++||| ||++++...... ..... ..+ .++|+++||++++....+++
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~ 220 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRN-GGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPY 220 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEE-EEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTT
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCC-CeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCc
Confidence 8999999544 222223468899999999 999998743211 00111 223 47889999999987777777
Q ss_pred ccchhH
Q 019282 328 LFNHYE 333 (343)
Q Consensus 328 ~~~~~e 333 (343)
+..|+-
T Consensus 221 ~~~~~~ 226 (233)
T 2ipx_A 221 ERDHAV 226 (233)
T ss_dssp SSSEEE
T ss_pred cCCcEE
Confidence 666653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=111.07 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||+|||+|.++..+++.. .++++|.++.+.+. ..++.++.++..+ ...+++||+|+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~-----~v~gvD~s~~~~~~----------~~~~~~~~~d~~~---~~~~~~fD~i~ 83 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN-----TVVSTDLNIRALES----------HRGGNLVRADLLC---SINQESVDVVV 83 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS-----EEEEEESCHHHHHT----------CSSSCEEECSTTT---TBCGGGCSEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhcC-----cEEEEECCHHHHhc----------ccCCeEEECChhh---hcccCCCCEEE
Confidence 456799999999999999998743 56666666666553 1234556553333 22347999999
Q ss_pred EccccccCCch-------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 260 ASAVFLHMPDK-------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 260 s~~v~~hl~~~-------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
++..+++.++. ....+++++.+.+ | ||.+++.... ....+++.+.++++||+.+....
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p-gG~l~~~~~~----~~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-T-VGMLYLLVIE----ANRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-C-SSEEEEEEEG----GGCHHHHHHHHHHTTCEEEEEEE
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhC-C-CCEEEEEEec----CCCHHHHHHHHHHCCCcEEEEEe
Confidence 99998865544 2334788999988 9 9999887521 12378899999999999876554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-12 Score=115.35 Aligned_cols=155 Identities=11% Similarity=0.051 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhc---CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHH--HHHHHhcccCCCCCCCcEEE
Q 019282 166 GRDVFEFLAEAS---HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLM--AAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 166 ~~~~~~~l~~~~---~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~--~a~a~~~~~~~~~~~~~~~~ 239 (343)
+......+...+ .++++.+|||+|||+|.++.++++... ...++++|+++.+.. ...+++ . .++.++
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~----r---~nv~~i 130 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR----R---PNIFPL 130 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH----C---TTEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----c---CCeEEE
Confidence 334445554443 488999999999999999999998764 345566666655432 222221 1 246666
Q ss_pred ecccCCcCCC-CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---c--cCCCHHHHHHHHHh
Q 019282 240 RGEDMDFTKF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF---C--SRLGGEECTKRLTS 313 (343)
Q Consensus 240 ~~~~~dl~~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~---~--~~~~~~~l~~~L~~ 313 (343)
.++......+ ...++||+|++.... ++. ...++..+.+.||| ||+|++...... . ..-..++..+.|++
T Consensus 131 ~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~-~~il~~~~~~~Lkp-GG~lvisik~~~~d~t~~~~e~~~~~~~~L~~ 205 (232)
T 3id6_C 131 LADARFPQSYKSVVENVDVLYVDIAQ---PDQ-TDIAIYNAKFFLKV-NGDMLLVIKARSIDVTKDPKEIYKTEVEKLEN 205 (232)
T ss_dssp ECCTTCGGGTTTTCCCEEEEEECCCC---TTH-HHHHHHHHHHHEEE-EEEEEEEEC-------CCSSSSTTHHHHHHHH
T ss_pred EcccccchhhhccccceEEEEecCCC---hhH-HHHHHHHHHHhCCC-CeEEEEEEccCCcccCCCHHHHHHHHHHHHHH
Confidence 6644332211 124689999997544 222 22245566779999 999998732111 0 00012445567889
Q ss_pred cCCcEEEeeeccccccchh
Q 019282 314 LGLEYIGKKTHDSLLFNHY 332 (343)
Q Consensus 314 aGf~~v~~~~~~~l~~~~~ 332 (343)
+||++++.....++-.+|+
T Consensus 206 ~gf~~~~~~~l~p~~~~h~ 224 (232)
T 3id6_C 206 SNFETIQIINLDPYDKDHA 224 (232)
T ss_dssp TTEEEEEEEECTTTCSSCE
T ss_pred CCCEEEEEeccCCCcCceE
Confidence 9999998777666555554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=114.16 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=89.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..++++.+|||+|||+|.++..+++.++ ... ++++|.++.+.+.++++........++.++.++..++... .+++|
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~f 94 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGR--VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-IDCPV 94 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCE--EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-CCSCE
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCE--EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-ccCCc
Confidence 3567889999999999999999998763 334 4455555555555554433221223567777655555433 35789
Q ss_pred eEEEEcccccc-------CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHHHHHHH---HhcCCcEEEeeec
Q 019282 256 DLIYASAVFLH-------MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEECTKRL---TSLGLEYIGKKTH 324 (343)
Q Consensus 256 DlIvs~~v~~h-------l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~l~~~L---~~aGf~~v~~~~~ 324 (343)
|+|++...+.. ........+++++.++||| ||++++.......... ..+.+.+++ ...+|++......
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT-GGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE-EEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEET
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcC-CCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEec
Confidence 99999865511 1112334589999999999 9999887422211111 133444444 3456877766554
Q ss_pred c
Q 019282 325 D 325 (343)
Q Consensus 325 ~ 325 (343)
+
T Consensus 174 ~ 174 (197)
T 3eey_A 174 N 174 (197)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-12 Score=116.81 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=94.9
Q ss_pred HHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC
Q 019282 173 LAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 173 l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
+.....++ ++.+|||+|||+|.++..+++..+. . ++++|.++.+.+.++++........++.++.++..++.....
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~--v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~ 116 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-K--IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP 116 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-E--EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-c--EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc
Confidence 44446777 8899999999999999999886432 4 555555555555555544322223357777765554442223
Q ss_pred CCceeEEEEccccccC------------------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh
Q 019282 252 GVVYDLIYASAVFLHM------------------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS 313 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl------------------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~ 313 (343)
.++||+|+++..+.+. .......+++.+.++||| ||++++... .....++...+++
T Consensus 117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~-----~~~~~~~~~~l~~ 190 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ-GGKANFVHR-----PERLLDIIDIMRK 190 (259)
T ss_dssp TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEE-EEEEEEEEC-----TTTHHHHHHHHHH
T ss_pred cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC-CcEEEEEEc-----HHHHHHHHHHHHH
Confidence 6799999998665433 112334689999999999 999998753 2236778888999
Q ss_pred cCCcEEEeee
Q 019282 314 LGLEYIGKKT 323 (343)
Q Consensus 314 aGf~~v~~~~ 323 (343)
.||.......
T Consensus 191 ~~~~~~~~~~ 200 (259)
T 3lpm_A 191 YRLEPKRIQF 200 (259)
T ss_dssp TTEEEEEEEE
T ss_pred CCCceEEEEE
Confidence 9998776553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=114.41 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||||||+|.++..+++..+...++++| .+..+.+.++++.. .+. .++.++.++..++.....++.||.|+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD--~s~~~l~~a~~~~~~~~~--~nv~~~~~d~~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIE--LFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVY 113 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEEC--SCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEE--echHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence 56799999999999999999877655555555 45455554444332 333 25677776555543222357899998
Q ss_pred EccccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 260 ASAVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 260 s~~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
+.....+.... ....+++++.++||| ||.+++....... .+.+.+.++++||+.+..
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkp-gG~l~~~td~~~~----~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGK-GGSIHFKTDNRGL----FEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTT-SCEEEEEESCHHH----HHHHHHHHHHHTCEEEEE
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcCC-CCEEEEEeCCHHH----HHHHHHHHHHCCCccccc
Confidence 86544332211 023489999999999 9999987521111 345667788899987654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=115.57 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=88.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChh-HHHHHH---HHhccc-CCCCCCCcEEEecccCCcCCCCCCC
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDEL-SLMAAF---RYELPS-QGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s-~~~~a~---a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
..++.+|||||||+|.++..+++..+ +..++++|.+ ..+.+. ++++.. .+. .++.+..++..+++.. ..+
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~--~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~~~d~~~l~~~-~~d 96 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQ--NTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFVIAAAESLPFE-LKN 96 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCT--TEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEECCBTTBCCGG-GTT
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEcCHHHhhhh-ccC
Confidence 35678999999999999999986544 3455555655 334332 344433 233 2466776655555321 124
Q ss_pred ceeEEEEcccccc----CCchHHHHHHHHHHhccCCCCcEEEEEec--ccc---------ccCCC-----HHHHHHHHHh
Q 019282 254 VYDLIYASAVFLH----MPDKLVWVGLERLASKLRPYDGRIFVSHN--IKF---------CSRLG-----GEECTKRLTS 313 (343)
Q Consensus 254 ~fDlIvs~~v~~h----l~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~~~---------~~~~~-----~~~l~~~L~~ 313 (343)
.+|.|+++....+ ... ....+|++++++||| ||++++... ..+ ...+. .+++.+.+++
T Consensus 97 ~v~~i~~~~~~~~~~~~~~~-~~~~~l~~~~r~Lkp-GG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~ 174 (225)
T 3p2e_A 97 IADSISILFPWGTLLEYVIK-PNRDILSNVADLAKK-EAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSN 174 (225)
T ss_dssp CEEEEEEESCCHHHHHHHHT-TCHHHHHHHHTTEEE-EEEEEEEECCCC--------------CCHHHHHSHHHHHHHHH
T ss_pred eEEEEEEeCCCcHHhhhhhc-chHHHHHHHHHhcCC-CcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHH
Confidence 5555555432211 100 012479999999999 999988321 100 01112 2248889999
Q ss_pred cCCcEEEeeeccccccchh-HHhhhh
Q 019282 314 LGLEYIGKKTHDSLLFNHY-EIWFEF 338 (343)
Q Consensus 314 aGf~~v~~~~~~~l~~~~~-e~w~~~ 338 (343)
+||+++.....+.-....| ..|...
T Consensus 175 aGf~v~~~~~~~~~~~~~~~~~w~~~ 200 (225)
T 3p2e_A 175 SGFRIDDVKELDNEYVKQFNSLWAKR 200 (225)
T ss_dssp HTCEEEEEEEECHHHHTTCCSHHHHH
T ss_pred cCCCeeeeeecCHHHHHHHHHHHhcc
Confidence 9999988877664333333 245544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-12 Score=111.45 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...++.+|||||||+|.++..++ ..++++|+++. ++.+..++..+++ + .+++||+
T Consensus 64 ~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~-~-~~~~fD~ 118 (215)
T 2zfu_A 64 QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVP-L-EDESVDV 118 (215)
T ss_dssp TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCS-C-CTTCEEE
T ss_pred ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCC-C-CCCCEeE
Confidence 34677899999999999987662 46677777664 1223333333322 2 3578999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
|++..++|+ .+.. .++++++++|+| ||.+++..... .....+++.++++++||+++....
T Consensus 119 v~~~~~l~~-~~~~--~~l~~~~~~L~~-gG~l~i~~~~~--~~~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 119 AVFCLSLMG-TNIR--DFLEEANRVLKP-GGLLKVAEVSS--RFEDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp EEEESCCCS-SCHH--HHHHHHHHHEEE-EEEEEEEECGG--GCSCHHHHHHHHHHTTEEEEEEEC
T ss_pred EEEehhccc-cCHH--HHHHHHHHhCCC-CeEEEEEEcCC--CCCCHHHHHHHHHHCCCEEEEEec
Confidence 999999964 5544 499999999999 99999875322 122589999999999999887554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-11 Score=114.64 Aligned_cols=141 Identities=12% Similarity=0.136 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+.+.+.+.+. .++.+|||+|||+|..+..++...+...++++|+++ .+.+.++++.. .+. . ++.++.++..+
T Consensus 96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~-~-~v~~~~~d~~~ 170 (276)
T 2b3t_A 96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP--DAVSLAQRNAQHLAI-K-NIHILQSDWFS 170 (276)
T ss_dssp HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH--HHHHHHHHHHHHHTC-C-SEEEECCSTTG
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC-C-ceEEEEcchhh
Confidence 345666666555 567899999999999999999877655555555555 44444444332 232 2 46666653333
Q ss_pred cCCCCCCCceeEEEEcccc-------------ccCCc----------hHHHHHHHHHHhccCCCCcEEEEEeccccccCC
Q 019282 246 FTKFGSGVVYDLIYASAVF-------------LHMPD----------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL 302 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~-------------~hl~~----------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~ 302 (343)
....++||+|+++..+ +|.|. .....+++++.++||| ||++++..+ ..
T Consensus 171 ---~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp-gG~l~~~~~-----~~ 241 (276)
T 2b3t_A 171 ---ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEHG-----WQ 241 (276)
T ss_dssp ---GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEECC-----SS
T ss_pred ---hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEEC-----ch
Confidence 2225689999998433 33331 2335689999999999 999999753 22
Q ss_pred CHHHHHHHHHhcCCcEEEe
Q 019282 303 GGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~ 321 (343)
..+++.+.++++||+.+..
T Consensus 242 ~~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 242 QGEAVRQAFILAGYHDVET 260 (276)
T ss_dssp CHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 4788999999999986543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=107.65 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
...+.+.+.+...++.+|||+|||+|.++..+++. ...++++|+++.. .+.+++... .+..+.++.++.+ ++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~--~~~a~~~~~~~~~~~~~~~~~~~---d~ 111 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRA--IKLAKENIKLNNLDNYDIRVVHS---DL 111 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHH--HHHHHHHHHHTTCTTSCEEEEEC---ST
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHH--HHHHHHHHHHcCCCccceEEEEC---ch
Confidence 34555666677778899999999999999999885 3455555555544 444444332 2332113666665 33
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
.+...++.||+|++...+++. ......+++++.++|+| ||.+++...... ...++.+.+++.
T Consensus 112 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~-gG~l~~~~~~~~----~~~~~~~~l~~~ 173 (194)
T 1dus_A 112 YENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKD-NGEIWVVIQTKQ----GAKSLAKYMKDV 173 (194)
T ss_dssp TTTCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE-EEEEEEEEESTH----HHHHHHHHHHHH
T ss_pred hcccccCCceEEEECCCcccc-hhHHHHHHHHHHHHcCC-CCEEEEEECCCC----ChHHHHHHHHHH
Confidence 333346789999999888663 33445699999999999 999998854221 144567777776
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=108.28 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
..+.+.+.+.+.+.++.+|||+|||+|.++..+++.. ..++++|+++.. .+.+++... .+. ..++.+..++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~--~~~a~~~~~~~~~-~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEA--ISTTEMNLQRHGL-GDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHH--HHHHHHHHHHTTC-CTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHH--HHHHHHHHHHcCC-CcceEEEecCHHH
Confidence 4455666666788899999999999999999998854 455555555544 444444322 222 1255566553222
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
. +...+.||+|++...++++ ..+++++.++|+| ||.+++..... ...+++.+.+++.||.+..
T Consensus 94 ~--~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~l~~-gG~l~~~~~~~----~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 94 A--LCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKP-GGRIIVTAILL----ETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp H--HTTSCCEEEEEESCCTTCH-----HHHHHHHHHTEEE-EEEEEEEECBH----HHHHHHHHHHHHTTCCCEE
T ss_pred h--cccCCCCCEEEECCchHHH-----HHHHHHHHHhcCC-CcEEEEEecCc----chHHHHHHHHHHCCCceEE
Confidence 1 1122589999999887654 3489999999999 99998875311 1256778889999995443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=121.92 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=91.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc---cCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP---SQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~---~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
.+++.+|||||||+|.++..+++..+...++++|+|+.....+ ++.. ..+..+.++.++.++..++.....+++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a--~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS--KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH--HHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHH--HHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence 3567899999999999999999865556677777777655554 3322 1122334666776644433211025789
Q ss_pred eEEEEccccccCCchHH--HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 256 DLIYASAVFLHMPDKLV--WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~--~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
|+|++....++.+.... ..++++++++||| ||++++.....+........+.+.++++||..+...
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKP-DGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEE-EEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCC-CcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 99999766654433221 3589999999999 999998754333222236778889999999977654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=116.80 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343)
...+...+.+... +.++.+|||+|||+|.++..+++. .. .++++|+++.....+ +++.. .+. . +.+..++
T Consensus 105 ~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~-g~-~v~gvDi~~~~v~~a--~~n~~~~~~-~--v~~~~~d 175 (254)
T 2nxc_A 105 ETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GG-KALGVDIDPMVLPQA--EANAKRNGV-R--PRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TC-EEEEEESCGGGHHHH--HHHHHHTTC-C--CEEEESC
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHh-CC-eEEEEECCHHHHHHH--HHHHHHcCC-c--EEEEECC
Confidence 3344455555543 567889999999999999998874 22 666777776665555 33322 222 1 4555542
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+. + .+++||+|+++...++ ...++.++.++||| ||+++++.... ...+++.+.++++||+++...
T Consensus 176 ~~~~--~-~~~~fD~Vv~n~~~~~-----~~~~l~~~~~~Lkp-gG~lils~~~~----~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 176 LEAA--L-PFGPFDLLVANLYAEL-----HAALAPRYREALVP-GGRALLTGILK----DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HHHH--G-GGCCEEEEEEECCHHH-----HHHHHHHHHHHEEE-EEEEEEEEEEG----GGHHHHHHHHHHTTCEEEEEE
T ss_pred hhhc--C-cCCCCCEEEECCcHHH-----HHHHHHHHHHHcCC-CCEEEEEeecc----CCHHHHHHHHHHCCCEEEEEe
Confidence 2221 2 2468999999766543 34589999999999 99999874211 137889999999999988765
Q ss_pred e
Q 019282 323 T 323 (343)
Q Consensus 323 ~ 323 (343)
.
T Consensus 243 ~ 243 (254)
T 2nxc_A 243 A 243 (254)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=108.27 Aligned_cols=153 Identities=10% Similarity=0.099 Sum_probs=92.1
Q ss_pred HHHHHHHH---HhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc
Q 019282 167 RDVFEFLA---EASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343)
Q Consensus 167 ~~~~~~l~---~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343)
......+. +.+.+.++.+|||+|||+|.++..+++.++ ...++++|+++ .+.+.+++..... .++.++.++
T Consensus 56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~~~~~~~~~---~~v~~~~~d 130 (227)
T 1g8a_A 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLRELVPIVEER---RNIVPILGD 130 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHSSC---TTEEEEECC
T ss_pred hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH--HHHHHHHHHHhcc---CCCEEEEcc
Confidence 34445552 334477889999999999999999998764 34455555555 4443333322221 356667664
Q ss_pred cCCcCCC-CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccccc-CCC-----HHHHHHHHHhcC
Q 019282 243 DMDFTKF-GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS-RLG-----GEECTKRLTSLG 315 (343)
Q Consensus 243 ~~dl~~~-~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~-~~~-----~~~l~~~L~~aG 315 (343)
..+...+ ...++||+|++... .......++.++.++||| ||++++........ ... .+++.++ .++
T Consensus 131 ~~~~~~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 131 ATKPEEYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKR-GGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY- 203 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEE-EEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-
T ss_pred CCCcchhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCC-CCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-
Confidence 4432111 12458999998654 122222359999999999 99998874322111 111 3556555 677
Q ss_pred CcEEEeeeccccccch
Q 019282 316 LEYIGKKTHDSLLFNH 331 (343)
Q Consensus 316 f~~v~~~~~~~l~~~~ 331 (343)
|+.++.....+....|
T Consensus 204 f~~~~~~~~~~~~~~~ 219 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDH 219 (227)
T ss_dssp SEEEEEEECTTTSSSE
T ss_pred ceeeeEeccCcccCCC
Confidence 9988766554443334
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=112.28 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=87.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-CCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-GSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~~~~~f 255 (343)
.++++.+|||||||+|..+..++...+...++++|++ +.+.+.+++... .+. . ++.++.++..++... ..+++|
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSL--NKRITFLEKLSEALQL-E-NTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHTC-S-SEEEEESCHHHHTTCTTTTTCE
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCC-C-CEEEEeccHHHhcccccccCCc
Confidence 3457789999999999999999876554555555554 455554444332 233 2 466776654444311 124689
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
|+|++..+ .+. ..+++.+.++||| ||.+++..+..... ..+++.+.+++.||+.+....
T Consensus 143 D~V~~~~~----~~~--~~~l~~~~~~Lkp-gG~l~~~~g~~~~~--~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 143 DIVTARAV----ARL--SVLSELCLPLVKK-NGLFVALKAASAEE--ELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp EEEEEECC----SCH--HHHHHHHGGGEEE-EEEEEEEECC-CHH--HHHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEecc----CCH--HHHHHHHHHhcCC-CCEEEEEeCCCchH--HHHHHHHHHHHcCCeEeEEEE
Confidence 99999763 333 3489999999999 99998875322111 134567788899999876553
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=112.32 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
......+.....+.++.+|||+|||+|.++..+++.+ +...++++ |.++.+.+.++++.. .+. .+++.+..++..
T Consensus 79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~ 155 (255)
T 3mb5_A 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSY--EIREDFAKLAWENIKWAGF-DDRVTIKLKDIY 155 (255)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHTC-TTTEEEECSCGG
T ss_pred HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEE--ecCHHHHHHHHHHHHHcCC-CCceEEEECchh
Confidence 4455567777889999999999999999999999874 34444455 444455555554433 233 224666665333
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC--CcEEEee
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG--LEYIGKK 322 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG--f~~v~~~ 322 (343)
+...+++||+|++ +.+++.. +++++.++|+| ||++++...... ..+++.+.+++.| |..++..
T Consensus 156 ---~~~~~~~~D~v~~-----~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~----~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 156 ---EGIEEENVDHVIL-----DLPQPER--VVEHAAKALKP-GGFFVAYTPCSN----QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp ---GCCCCCSEEEEEE-----CSSCGGG--GHHHHHHHEEE-EEEEEEEESSHH----HHHHHHHHHHHTGGGBSCCEEE
T ss_pred ---hccCCCCcCEEEE-----CCCCHHH--HHHHHHHHcCC-CCEEEEEECCHH----HHHHHHHHHHHcCCCccccEEE
Confidence 2234568999998 3455544 89999999999 999988742110 1567788899999 8776543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=115.21 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=75.2
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
...++++.+|||||||+|.++..++....... ++++|.++.+.+.++++.+ .+. .++.++.++..+++ +++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~--V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l~----d~~ 188 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMR--VNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVID----GLE 188 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCE--EEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGGG----GCC
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCE--EEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhCC----CCC
Confidence 47889999999999999987655444444444 5555555566665555443 354 47788887665543 578
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
||+|++... .++... ++++++++||| ||++++..
T Consensus 189 FDvV~~~a~---~~d~~~--~l~el~r~LkP-GG~Lvv~~ 222 (298)
T 3fpf_A 189 FDVLMVAAL---AEPKRR--VFRNIHRYVDT-ETRIIYRT 222 (298)
T ss_dssp CSEEEECTT---CSCHHH--HHHHHHHHCCT-TCEEEEEE
T ss_pred cCEEEECCC---ccCHHH--HHHHHHHHcCC-CcEEEEEc
Confidence 999998654 455544 99999999999 99999875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=114.79 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=88.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+...+.+.++.+|||+|||+|.++..+++.+ +... ++++|.++.+.+.++++........++.+..++. .+.
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~ 174 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT--LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADF 174 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSE--EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCE--EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hcc
Confidence 456666788899999999999999999999863 3344 4455555555555554433210122566665533 322
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
..+++||+|++ +++++.. +++++.++||| ||++++...... ..+++.+.++++||..++...
T Consensus 175 ~~~~~fD~Vi~-----~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~~~~----~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 175 ISDQMYDAVIA-----DIPDPWN--HVQKIASMMKP-GSVATFYLPNFD----QSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp CCSCCEEEEEE-----CCSCGGG--SHHHHHHTEEE-EEEEEEEESSHH----HHHHHHHHSGGGTEEEEEEEE
T ss_pred CcCCCccEEEE-----cCcCHHH--HHHHHHHHcCC-CCEEEEEeCCHH----HHHHHHHHHHHCCCeEEEEEE
Confidence 23568999998 5565544 89999999999 999998763210 246677888899998876543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=110.34 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+++.+..... .++.+|||+|||+|.++..++.. +...++++|+++.. .+.++++.. .+. .++.++.++..+
T Consensus 31 ~~l~~~l~~~~~-~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~--~~~a~~~~~~~~~--~~v~~~~~d~~~ 104 (189)
T 3p9n_A 31 ESLFNIVTARRD-LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRS--AAVIARNIEALGL--SGATLRRGAVAA 104 (189)
T ss_dssp HHHHHHHHHHSC-CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHH--HHHHHHHHHHHTC--SCEEEEESCHHH
T ss_pred HHHHHHHHhccC-CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHH--HHHHHHHHHHcCC--CceEEEEccHHH
Confidence 344555543322 46789999999999999987763 33345566555544 444444332 333 356777765444
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
+.....+++||+|+++..+++. .......++.+.+ +|+| ||.+++.+.
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~p-gG~l~~~~~ 154 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVD-SADVDAILAALGTNGWTRE-GTVAVVERA 154 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCT-TCEEEEEEE
T ss_pred HHhhccCCCccEEEECCCCCcc-hhhHHHHHHHHHhcCccCC-CeEEEEEec
Confidence 4311125789999999888665 2334458999999 9999 999999864
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-12 Score=120.03 Aligned_cols=115 Identities=16% Similarity=0.229 Sum_probs=81.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~ 248 (343)
.+.+.+.+.+.++.+|||||||+|.++..+++. +...++++|+++ +...++++.+ .+. ..++.++.++..++
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~---~~~~a~~~~~~~~l-~~~v~~~~~d~~~~-- 111 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST---MAQHAEVLVKSNNL-TDRIVVIPGKVEEV-- 111 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST---HHHHHHHHHHHTTC-TTTEEEEESCTTTC--
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH---HHHHHHHHHHHcCC-CCcEEEEEcchhhC--
Confidence 345555566778899999999999999998874 334566666653 3344444333 333 23667776644333
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...++||+|++..+++|+..+.....+.+++++||| ||.+++.
T Consensus 112 -~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~ 154 (348)
T 2y1w_A 112 -SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKP-SGNMFPT 154 (348)
T ss_dssp -CCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEE-EEEEESC
T ss_pred -CCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCC-CeEEEEe
Confidence 334689999999999888776656688899999999 9999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=102.60 Aligned_cols=135 Identities=11% Similarity=0.139 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+.+.+.+.+.+.++.+|||+|||+|.++..+++ +...++++|+++. +.+.++++.. .+. .++.++.++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~--~~~~a~~~~~~~~~--~~~~~~~~d~~ 93 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDG--AIEVTKQNLAKFNI--KNCQIIKGRAE 93 (183)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHH--HHHHHHHHHHHTTC--CSEEEEESCHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHH--HHHHHHHHHHHcCC--CcEEEEECCcc
Confidence 345666677777888889999999999999999988 4445555555554 4444444332 232 24566655333
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+ ...++.||+|++..+ .+ ...+++++.++ | ||.+++..... ....++.+.++++||++...+
T Consensus 94 ~---~~~~~~~D~i~~~~~----~~--~~~~l~~~~~~--~-gG~l~~~~~~~----~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 94 D---VLDKLEFNKAFIGGT----KN--IEKIIEILDKK--K-INHIVANTIVL----ENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp H---HGGGCCCSEEEECSC----SC--HHHHHHHHHHT--T-CCEEEEEESCH----HHHHHHHHHHHHTTCEEEEEE
T ss_pred c---cccCCCCcEEEECCc----cc--HHHHHHHHhhC--C-CCEEEEEeccc----ccHHHHHHHHHHcCCeEEEEE
Confidence 2 113468999999887 22 23489999998 9 99999885311 125678889999998766543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=109.30 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+...+.+.+.+.++.+|||||||+|.++..+++. ...++++|+++ .+.+.++++.. .+.. ++.+..++..
T Consensus 62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~--~~~~~a~~~~~~~~~~--~v~~~~~d~~ 135 (210)
T 3lbf_A 62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIK--GLQWQARRRLKNLDLH--NVSTRHGDGW 135 (210)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCH--HHHHHHHHHHHHTTCC--SEEEEESCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCH--HHHHHHHHHHHHcCCC--ceEEEECCcc
Confidence 4456677777788899999999999999999999986 24455555555 44444444332 2332 4666665333
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+.. ..+++||+|++..+++|+++ .+.++||| ||++++..+
T Consensus 136 ~~~--~~~~~~D~i~~~~~~~~~~~--------~~~~~L~p-gG~lv~~~~ 175 (210)
T 3lbf_A 136 QGW--QARAPFDAIIVTAAPPEIPT--------ALMTQLDE-GGILVLPVG 175 (210)
T ss_dssp GCC--GGGCCEEEEEESSBCSSCCT--------HHHHTEEE-EEEEEEEEC
T ss_pred cCC--ccCCCccEEEEccchhhhhH--------HHHHhccc-CcEEEEEEc
Confidence 322 23578999999999999886 47899999 999999864
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-11 Score=112.82 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec-c--cC
Q 019282 169 VFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG-E--DM 244 (343)
Q Consensus 169 ~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~-~--~~ 244 (343)
.+..+.+...+. ++.+|||||||||.++..+++. +...++++|++. .|.+.+.+. +.++..... + ..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~--~mL~~a~r~------~~rv~~~~~~ni~~l 142 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGT--NQLVWKLRQ------DDRVRSMEQYNFRYA 142 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSS--SCSCHHHHT------CTTEEEECSCCGGGC
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCH--HHHHHHHHh------CcccceecccCceec
Confidence 444455555654 5679999999999999988874 333445555544 444432211 112222211 1 01
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccccc------CC-----------CHHHH
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS------RL-----------GGEEC 307 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~------~~-----------~~~~l 307 (343)
...++ +..+||+|++..+|+++. .+|.+++++||| ||.+++.....|.. .. ..+++
T Consensus 143 ~~~~l-~~~~fD~v~~d~sf~sl~-----~vL~e~~rvLkp-GG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v 215 (291)
T 3hp7_A 143 EPVDF-TEGLPSFASIDVSFISLN-----LILPALAKILVD-GGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETV 215 (291)
T ss_dssp CGGGC-TTCCCSEEEECCSSSCGG-----GTHHHHHHHSCT-TCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHH
T ss_pred chhhC-CCCCCCEEEEEeeHhhHH-----HHHHHHHHHcCc-CCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHH
Confidence 11112 233599999998887762 289999999999 99998873322211 01 16778
Q ss_pred HHHHHhcCCcEEEeee
Q 019282 308 TKRLTSLGLEYIGKKT 323 (343)
Q Consensus 308 ~~~L~~aGf~~v~~~~ 323 (343)
.++++++||.+.....
T Consensus 216 ~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDF 231 (291)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
Confidence 8899999999877554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-12 Score=110.91 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||+|||+|..+..++...+...++++|+++... +.+++... .+. . ++.+..++ +.+....++||+|+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~--~~a~~~~~~~~~-~-~v~~~~~d---~~~~~~~~~~D~i~ 137 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV--RFLRQVQHELKL-E-NIEPVQSR---VEEFPSEPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH--HHHHHHHHHTTC-S-SEEEEECC---TTTSCCCSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHH--HHHHHHHHHcCC-C-CeEEEecc---hhhCCccCCcCEEE
Confidence 47799999999999999999877666666666665444 43443322 232 2 35666553 33333457899999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+..+ .+. ..+++.+.++|+| ||.+++..+. ...+++.+.+. ||+.+...
T Consensus 138 ~~~~----~~~--~~~l~~~~~~L~~-gG~l~~~~~~-----~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 138 SRAF----ASL--NDMVSWCHHLPGE-QGRFYALKGQ-----MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp CSCS----SSH--HHHHHHHTTSEEE-EEEEEEEESS-----CCHHHHHTSCT--TEEEEEEE
T ss_pred Eecc----CCH--HHHHHHHHHhcCC-CcEEEEEeCC-----CchHHHHHHhc--CCceeeee
Confidence 8643 222 3489999999999 9999998642 23556665554 99887644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=108.64 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.+.+.+.. .+.++.+|||||||+|.++..+++... ..++++|+++.....+ ++.... ..++.+..++..+++
T Consensus 31 ~~~~~l~~--~~~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a--~~~~~~---~~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 31 SFRALLEP--ELRPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAM--QACYAH---VPQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHHGG--GCCTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHH--HHHTTT---CTTCEEEECCTTSCC
T ss_pred HHHHHHHH--hcCCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHH--HHhccc---CCCcEEEEcchhcCC
Confidence 34455543 347788999999999999999988532 2566666665544444 433221 125666666444432
Q ss_pred CCCCCCceeEEEEccccccCC-------------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 248 KFGSGVVYDLIYASAVFLHMP-------------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~-------------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
+ .+++||+|++..+++++. ......+++++.++||| ||++++.... .+......+...
T Consensus 103 -~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~------~~~~~~~~~~~~ 173 (215)
T 2pxx_A 103 -F-PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP-GGRFISMTSA------APHFRTRHYAQA 173 (215)
T ss_dssp -S-CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC------CHHHHHHHHCCG
T ss_pred -C-CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC-CCEEEEEeCC------CcHHHHHHHhcc
Confidence 2 357899999999998775 23445699999999999 9999887521 133344566667
Q ss_pred CC
Q 019282 315 GL 316 (343)
Q Consensus 315 Gf 316 (343)
|+
T Consensus 174 ~~ 175 (215)
T 2pxx_A 174 YY 175 (215)
T ss_dssp GG
T ss_pred cc
Confidence 76
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-11 Score=110.83 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.....+... ++++.+|||+|||+|.++..+++.... .++++|.++.+.+.++++...+...+++.++.++..++.
T Consensus 114 ~~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~~~---~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~ 188 (278)
T 2frn_A 114 KERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKA---KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP 188 (278)
T ss_dssp HHHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred HHHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc
Confidence 334444433 567899999999999999999986432 455556665666655554442222335667776554444
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc--cccCCCHHHHHHHHHhcCCcEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK--FCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~--~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
.++.||+|++..... . ..++.++.++||| ||.+++..... .......+.+.+.++++||++..
T Consensus 189 ---~~~~fD~Vi~~~p~~----~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 189 ---GENIADRILMGYVVR----T--HEFIPKALSIAKD-GAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ---CCSCEEEEEECCCSS----G--GGGHHHHHHHEEE-EEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ---ccCCccEEEECCchh----H--HHHHHHHHHHCCC-CeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 367899999964421 1 2378999999999 99998864322 22223367888999999998765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=115.88 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=92.8
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.++.+|||||||+|.++..+++.++...++++|+ +.+.+.+++ . .++.++.+ |+.+. .. .||+
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-----~--~~v~~~~~---d~~~~-~p-~~D~ 249 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR---PQVVENLSG-----S--NNLTYVGG---DMFTS-IP-NADA 249 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCC-----B--TTEEEEEC---CTTTC-CC-CCSE
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC---HHHHhhccc-----C--CCcEEEec---cccCC-CC-CccE
Confidence 356678999999999999999999877655555554 444443322 1 23566655 33221 12 3999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCC--CcEEEEEecc---cc--------------------ccCCCHHHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPY--DGRIFVSHNI---KF--------------------CSRLGGEECTKRLT 312 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~--GG~lvi~~~~---~~--------------------~~~~~~~~l~~~L~ 312 (343)
|++..++||++++....+|++++++|||. ||++++.... .. ...++.+++.++++
T Consensus 250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~ 329 (352)
T 1fp2_A 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFI 329 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHH
T ss_pred EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHH
Confidence 99999999999988667999999999983 6888776311 00 01134789999999
Q ss_pred hcCCcEEEeee
Q 019282 313 SLGLEYIGKKT 323 (343)
Q Consensus 313 ~aGf~~v~~~~ 323 (343)
++||+.++...
T Consensus 330 ~aGf~~~~~~~ 340 (352)
T 1fp2_A 330 EAGFQHYKISP 340 (352)
T ss_dssp HTTCCEEEEEE
T ss_pred HCCCCeeEEEe
Confidence 99999887654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=111.73 Aligned_cols=144 Identities=11% Similarity=0.043 Sum_probs=93.7
Q ss_pred HHHHHHHHhcC-CCCCCeEEEEcCCc---CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 168 DVFEFLAEASH-ITPNSHVLEIGCGT---LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 168 ~~~~~l~~~~~-l~~~~rVLDIGCGt---G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
..++.+.+.+. ..+..+|||||||+ |.++..+.+..+...++++|++ +.+.+.++++... ..++.++.++.
T Consensus 63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~s--p~~l~~Ar~~~~~---~~~v~~~~~D~ 137 (274)
T 2qe6_A 63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDID--PMVLTHGRALLAK---DPNTAVFTADV 137 (274)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHTT---CTTEEEEECCT
T ss_pred HHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECC--hHHHHHHHHhcCC---CCCeEEEEeeC
Confidence 34444443333 23447999999999 9888777665555555555554 5555555544321 23566776644
Q ss_pred CCcC----------CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---------------
Q 019282 244 MDFT----------KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF--------------- 298 (343)
Q Consensus 244 ~dl~----------~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~--------------- 298 (343)
.+.. .++ .++||+|++..++||+++.....+|++++++|+| ||+|++.+...-
T Consensus 138 ~~~~~~~~~~~~~~~~d-~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p-GG~l~i~~~~~~~~~~~~~~~~~~~~~ 215 (274)
T 2qe6_A 138 RDPEYILNHPDVRRMID-FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP-GSYLFMTSLVDTGLPAQQKLARITREN 215 (274)
T ss_dssp TCHHHHHHSHHHHHHCC-TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT-TCEEEEEEEBCSSCHHHHHHHHHHHHH
T ss_pred CCchhhhccchhhccCC-CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCC-CcEEEEEEecCcchHHHHHHHHHHHhc
Confidence 3321 121 2489999999999999986566699999999999 999998853210
Q ss_pred ---ccCCCHHHHHHHHHhcCCcEEE
Q 019282 299 ---CSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 299 ---~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
...++.+++.+++ .||++++
T Consensus 216 ~~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 216 LGEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp HSCCCCBCHHHHHHTT--TTCEECT
T ss_pred CCCCccCCHHHHHHHh--CCCeEcc
Confidence 0112477888777 5887665
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=111.93 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+.+.+.... +++.+|||||||+|.++..+++. +..++++|.++.+.+.+++... . . ++.++..+++
T Consensus 44 ~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~----~-~--~~~~d~~~~~- 109 (260)
T 2avn_A 44 IGSFLEEYL--KNPCRVLDLGGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGV----K-N--VVEAKAEDLP- 109 (260)
T ss_dssp HHHHHHHHC--CSCCEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTC----S-C--EEECCTTSCC-
T ss_pred HHHHHHHhc--CCCCeEEEeCCCcCHHHHHHHHc----CCeEEEEeCCHHHHHHHHhhcC----C-C--EEECcHHHCC-
Confidence 344444433 37789999999999999999874 3345555555555555554321 1 2 4444333333
Q ss_pred CCCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 249 FGSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+ .+++||+|++..+++|+ ++. ..+|++++++||| ||.+++..
T Consensus 110 ~-~~~~fD~v~~~~~~~~~~~~~--~~~l~~~~~~Lkp-gG~l~~~~ 152 (260)
T 2avn_A 110 F-PSGAFEAVLALGDVLSYVENK--DKAFSEIRRVLVP-DGLLIATV 152 (260)
T ss_dssp S-CTTCEEEEEECSSHHHHCSCH--HHHHHHHHHHEEE-EEEEEEEE
T ss_pred C-CCCCEEEEEEcchhhhccccH--HHHHHHHHHHcCC-CeEEEEEe
Confidence 2 36789999999877776 553 4599999999999 99999863
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=113.26 Aligned_cols=142 Identities=8% Similarity=0.006 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 167 RDVFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 167 ~~~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
+.+.+.+.+.+.. .++.+|||+|||+|.++..+++..+...++++|+++. +.+.++++.. .+. ++.++.++..
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~--~~~~a~~~~~~~~~---~~~~~~~d~~ 89 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMD--ALAVARRNAERFGA---VVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHHHhCC---ceEEEEcchH
Confidence 3455555555544 7788999999999999999999765555556655554 4444443322 111 3333433222
Q ss_pred CcCCCCCC-----CceeEEEEccccccCC------chHH------------------HHHHHHHHhccCCCCcE-EEEEe
Q 019282 245 DFTKFGSG-----VVYDLIYASAVFLHMP------DKLV------------------WVGLERLASKLRPYDGR-IFVSH 294 (343)
Q Consensus 245 dl~~~~~~-----~~fDlIvs~~v~~hl~------~~~~------------------~~~L~~l~r~LkP~GG~-lvi~~ 294 (343)
+ ...+ ++||+|+++..+++.. .... ..++++++++||| ||+ +++..
T Consensus 90 ~---~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 165 (215)
T 4dzr_A 90 E---WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR-GRAGVFLEV 165 (215)
T ss_dssp H---HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS-SSEEEEEEC
T ss_pred h---hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence 2 1122 7899999975554322 2111 4588999999999 999 55554
Q ss_pred ccccccCCCHHHHHHHHH--hcCCcEEEee
Q 019282 295 NIKFCSRLGGEECTKRLT--SLGLEYIGKK 322 (343)
Q Consensus 295 ~~~~~~~~~~~~l~~~L~--~aGf~~v~~~ 322 (343)
. ....+.+.+.++ ++||..+...
T Consensus 166 ~-----~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 166 G-----HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp T-----TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred C-----CccHHHHHHHHHHhhcCCceEEEE
Confidence 2 223778888999 9999766533
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=115.73 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhc--CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecc
Q 019282 166 GRDVFEFLAEAS--HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGE 242 (343)
Q Consensus 166 ~~~~~~~l~~~~--~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~ 242 (343)
.+.+.+.+.+.. ...++.+|||+|||+|.++..+++. +..++++|.+..+.+.++++.. .+. .+.++.++
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~----g~~V~gvDis~~al~~A~~n~~~~~~---~v~~~~~D 288 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM----GAEVVGVEDDLASVLSLQKGLEANAL---KAQALHSD 288 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT----TCEEEEEESBHHHHHHHHHHHHHTTC---CCEEEECS
T ss_pred HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEcc
Confidence 345566665443 2346789999999999999999984 2344444555555555554433 222 25566554
Q ss_pred cCCcCCCCCCCceeEEEEcccccc---CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHH------H
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLH---MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRL------T 312 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~h---l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L------~ 312 (343)
..+.. ..+++||+|+++..+|+ ........+++++.++||| ||.+++..+... . ...+.+.+ +
T Consensus 289 ~~~~~--~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lkp-GG~l~iv~n~~l----~~~~~l~~~f~~v~~l~ 361 (381)
T 3dmg_A 289 VDEAL--TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP-GGVFFLVSNPFL----KYEPLLEEKFGAFQTLK 361 (381)
T ss_dssp TTTTS--CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE-EEEEEEEECTTS----CHHHHHHHHHSCCEEEE
T ss_pred hhhcc--ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCc-CcEEEEEEcCCC----ChHHHHHHhhccEEEEe
Confidence 33332 12479999999999987 3345556699999999999 999998753221 1 22233322 4
Q ss_pred hcCCcEEEeee
Q 019282 313 SLGLEYIGKKT 323 (343)
Q Consensus 313 ~aGf~~v~~~~ 323 (343)
+.||+++....
T Consensus 362 ~~gF~Vl~a~~ 372 (381)
T 3dmg_A 362 VAEYKVLFAEK 372 (381)
T ss_dssp ESSSEEEEEEC
T ss_pred CCCEEEEEEEE
Confidence 56777776543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=108.52 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
-+.+++.+...+ ++..+|||||||+|-++..++...+...++++|++.. +.+.++++.. .|... ++.+.
T Consensus 36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~--~leiar~~~~~~g~~~-~v~~~----- 105 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRA--EIAFLSSIIGKLKTTI-KYRFL----- 105 (200)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHH--HHHHHHHHHHHSCCSS-EEEEE-----
T ss_pred HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHhcCCCc-cEEEe-----
Confidence 345666666543 5678999999999999999988766666666666554 4444454443 33322 33332
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccccc-------CCCHHHHHHHHHhcCCc
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCS-------RLGGEECTKRLTSLGLE 317 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~-------~~~~~~l~~~L~~aGf~ 317 (343)
++....+.++||+|++..++|++.+. +..+.++++.|+| ||.++ +++..... ......|.+.+ ...+.
T Consensus 106 d~~~~~~~~~~DvVLa~k~LHlL~~~--~~al~~v~~~L~p-ggvfI-Sfptksl~Gr~~gm~~~Y~~~~~~~~-~~~~~ 180 (200)
T 3fzg_A 106 NKESDVYKGTYDVVFLLKMLPVLKQQ--DVNILDFLQLFHT-QNFVI-SFPIKSLSGKEKGMEENYQLWFESFT-KGWIK 180 (200)
T ss_dssp CCHHHHTTSEEEEEEEETCHHHHHHT--TCCHHHHHHTCEE-EEEEE-EEECCCCC--CTTCCCCHHHHHHHHT-TTTSC
T ss_pred cccccCCCCCcChhhHhhHHHhhhhh--HHHHHHHHHHhCC-CCEEE-EeChHHhcCCCcchhhhHHHHHHHhc-cCcce
Confidence 22212356789999999999999333 3367799999999 76654 43322211 11155566555 55566
Q ss_pred EEEeeec
Q 019282 318 YIGKKTH 324 (343)
Q Consensus 318 ~v~~~~~ 324 (343)
.+.....
T Consensus 181 ~~~~~~~ 187 (200)
T 3fzg_A 181 ILDSKVI 187 (200)
T ss_dssp EEEEEEE
T ss_pred eeeeeee
Confidence 5554443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=103.33 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=82.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC-CCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF-GSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~-~~~~~f 255 (343)
++++++.+|||||||. +.+|.+..|.+.+++.... ++.+..++..+++.. ..+++|
T Consensus 8 ~g~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp TTCCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCE
T ss_pred cCCCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCE
Confidence 5788999999999996 1267777777776653211 255565544444410 136789
Q ss_pred eEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEecccc-----ccCCCHHHHHHHHHhcCC
Q 019282 256 DLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHNIKF-----CSRLGGEECTKRLTSLGL 316 (343)
Q Consensus 256 DlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~-----~~~~~~~~l~~~L~~aGf 316 (343)
|+|++..++||+ ++... +|++++++||| ||++++.+.... ...+..+++.+.|+++||
T Consensus 65 D~V~~~~~l~~~~~~~~~--~l~~~~r~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 65 DIILSGLVPGSTTLHSAE--ILAEIARILRP-GGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEEECCSTTCCCCCCHH--HHHHHHHHEEE-EEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred eEEEECChhhhcccCHHH--HHHHHHHHCCC-CEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 999999999999 77644 99999999999 999999643111 112348899999999999
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=115.88 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-C-----CCCCCcEEEecccCCcC---CC
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-G-----LLHKRPIIVRGEDMDFT---KF 249 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-~-----~~~~~~~~~~~~~~dl~---~~ 249 (343)
++++.+|||||||+|.++..+++. +...++++|+++. +.+.+++.... + ....++.++.++..+++ .+
T Consensus 32 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 108 (313)
T 3bgv_A 32 KKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADV--SVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKF 108 (313)
T ss_dssp C--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHH--HHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTC
T ss_pred cCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHH--HHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhc
Confidence 346789999999999999998873 3345555555554 44444432211 0 01114556665444432 12
Q ss_pred C-CCCceeEEEEccccccC-Cc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 G-SGVVYDLIYASAVFLHM-PD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~-~~~~fDlIvs~~v~~hl-~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. .+++||+|++..++||+ .+ .....+|++++++||| ||.++++
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~ 154 (313)
T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP-GGYFIGT 154 (313)
T ss_dssp SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE-EEEEEEE
T ss_pred ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 1 24589999999999998 33 4455699999999999 9999887
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=111.28 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
..++..+......+++.+|||||||+|..+..+++.++. +..++++|.++.+.+.+++... .+....++.++.++..+
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLAD-NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCT-TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 345666665555555669999999999999999997752 2345555555566665555443 44432467777775554
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.....+++||+|++..... ....+++++.++||| ||++++.
T Consensus 121 ~l~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~Lkp-GG~lv~d 162 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVSPM-----DLKALVDAAWPLLRR-GGALVLA 162 (221)
T ss_dssp HGGGSCTTCEEEEEECCCTT-----THHHHHHHHHHHEEE-EEEEEET
T ss_pred HHHHhcCCCcCeEEEcCcHH-----HHHHHHHHHHHHcCC-CcEEEEe
Confidence 43221257899999865432 233489999999999 9999885
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=109.85 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=88.5
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCC-
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTK- 248 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~- 248 (343)
+.......++.+|||+|||+|.++..++...+...++++|+++.....+ +++... ....+++.++.++..++..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a--~~n~~~~~~~~l~~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFA--RRSLELPDNAAFSARIEVLEADVTLRAKA 105 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHH--HHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHH--HHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence 3344566778899999999999999999987655566666665544444 443322 2222246677664444310
Q ss_pred ----CCCCCceeEEEEccccccC----------------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHH
Q 019282 249 ----FGSGVVYDLIYASAVFLHM----------------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECT 308 (343)
Q Consensus 249 ----~~~~~~fDlIvs~~v~~hl----------------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~ 308 (343)
...+++||+|+++..+... .......+++.+.++||| ||++++.+... ...++.
T Consensus 106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~-----~~~~~~ 179 (260)
T 2ozv_A 106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS-GGQLSLISRPQ-----SVAEII 179 (260)
T ss_dssp HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE-EEEEEEEECGG-----GHHHHH
T ss_pred hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC-CCEEEEEEcHH-----HHHHHH
Confidence 0135789999998544322 112244589999999999 99999876432 245566
Q ss_pred HHHHhcCCcEEEee
Q 019282 309 KRLTSLGLEYIGKK 322 (343)
Q Consensus 309 ~~L~~aGf~~v~~~ 322 (343)
+.+++. |..+...
T Consensus 180 ~~l~~~-~~~~~i~ 192 (260)
T 2ozv_A 180 AACGSR-FGGLEIT 192 (260)
T ss_dssp HHHTTT-EEEEEEE
T ss_pred HHHHhc-CCceEEE
Confidence 677664 7655433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=108.10 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+.+.+.+.+.+.++.+|||||||+|.++..+++.. ..++++|+++ .+.+.+++..... . ++.++.++..+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~--~~~~~a~~~~~~~--~-~v~~~~~d~~~ 127 (231)
T 1vbf_A 55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINE--KMYNYASKLLSYY--N-NIKLILGDGTL 127 (231)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCH--HHHHHHHHHHTTC--S-SEEEEESCGGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCH--HHHHHHHHHHhhc--C-CeEEEECCccc
Confidence 34567777777888899999999999999999999864 4455555554 4444444433211 1 45566553332
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
. ...+++||+|++..+++|+.+ ++.++||| ||++++...
T Consensus 128 ~--~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~p-gG~l~~~~~ 166 (231)
T 1vbf_A 128 G--YEEEKPYDRVVVWATAPTLLC--------KPYEQLKE-GGIMILPIG 166 (231)
T ss_dssp C--CGGGCCEEEEEESSBBSSCCH--------HHHHTEEE-EEEEEEEEC
T ss_pred c--cccCCCccEEEECCcHHHHHH--------HHHHHcCC-CcEEEEEEc
Confidence 1 223578999999999998864 58899999 999998753
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=111.55 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCcCH----HHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhccc-----CCCC---------------C-
Q 019282 181 PNSHVLEIGCGTLR----VGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPS-----QGLL---------------H- 233 (343)
Q Consensus 181 ~~~rVLDIGCGtG~----~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~-----~~~~---------------~- 233 (343)
++.+|||+|||||. ++..+++.++.. ++.++++|.+..+.+.|++..- .+.+ +
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 666667664421 2344444444444554444210 0000 0
Q ss_pred ---------CCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 234 ---------KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 234 ---------~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
.++.+..++..+.+ ++..+.||+|+|.++++|+.++....+++++++.|+| ||.|++.+.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~-~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p-gG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP-DGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE-EEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCC-CCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC-CcEEEEEec
Confidence 14556655333311 2224689999999999999888777899999999999 999999754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=119.56 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=85.1
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHh-----c-ccCCCCCCCcEE
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE-----L-PSQGLLHKRPII 238 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~-----~-~~~~~~~~~~~~ 238 (343)
.....+..+.+.+.+.++.+|||||||+|.+++.++...+...++++|+++.+...+.++. + ...+....++.+
T Consensus 157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef 236 (438)
T 3uwp_A 157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236 (438)
T ss_dssp THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 4456677777778999999999999999999999998665544667766665555443311 0 112332236778
Q ss_pred EecccCCcCCCCC-CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 239 VRGEDMDFTKFGS-GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 239 ~~~~~~dl~~~~~-~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.++..+++ +.. -..||+|+++..+ +.++ ....|.+++++||| ||+|++.
T Consensus 237 i~GD~~~lp-~~d~~~~aDVVf~Nn~~-F~pd--l~~aL~Ei~RvLKP-GGrIVss 287 (438)
T 3uwp_A 237 ERGDFLSEE-WRERIANTSVIFVNNFA-FGPE--VDHQLKERFANMKE-GGRIVSS 287 (438)
T ss_dssp EECCTTSHH-HHHHHHTCSEEEECCTT-CCHH--HHHHHHHHHTTSCT-TCEEEES
T ss_pred EECcccCCc-cccccCCccEEEEcccc-cCch--HHHHHHHHHHcCCC-CcEEEEe
Confidence 877544433 110 1479999998776 3333 34488999999999 9999986
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=110.86 Aligned_cols=133 Identities=17% Similarity=0.060 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-CCCCcee
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-GSGVVYD 256 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~~~~~fD 256 (343)
..++.+|||||||+|..+..++...+...++++|++. .+.+.++++.. .++ . ++.++.++..++... ...++||
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~l-~-~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATR--KKVAFVERAIEVLGL-K-GARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTC-S-SEEEEECCHHHHTTSTTTTTCEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCC-C-ceEEEECcHHHhhcccccCCCce
Confidence 4567899999999999999999877666655555555 44444454433 333 2 467777755555421 1247899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+|++..+. +. ..+++.+.++||| ||++++..+..... ...++...+++.||+.+.....
T Consensus 154 ~I~s~a~~----~~--~~ll~~~~~~Lkp-gG~l~~~~g~~~~~--e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 154 RAVARAVA----PL--CVLSELLLPFLEV-GGAAVAMKGPRVEE--ELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEEESSC----CH--HHHHHHHGGGEEE-EEEEEEEECSCCHH--HHTTHHHHHHHHTEEEEEEEEE
T ss_pred EEEECCcC----CH--HHHHHHHHHHcCC-CeEEEEEeCCCcHH--HHHHHHHHHHHcCCeEEEEEEe
Confidence 99997542 32 3489999999999 99998865421111 1345667788899998876543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=101.78 Aligned_cols=132 Identities=11% Similarity=0.123 Sum_probs=82.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC--CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN--PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~--~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.+.+.....++++.+|||||||+|.++..+++.++ ...++++|+++. . . ..++.++.++..+.
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~--------~----~--~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM--------D----P--IPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC--------C----C--CTTCEEEECCTTTT
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc--------C----C--CCCceEEEccccch
Confidence 444343333467888999999999999999998776 344555555541 0 0 11345555533332
Q ss_pred CC------------------------CCCCCceeEEEEccccccCCc----hH-----HHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TK------------------------FGSGVVYDLIYASAVFLHMPD----KL-----VWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~------------------------~~~~~~fDlIvs~~v~~hl~~----~~-----~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. + .+++||+|++..++++.+. .. ...++++++++||| ||.+++.
T Consensus 76 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~ 153 (201)
T 2plw_A 76 NMNNIKNINYIDNMNNNSVDYKLKEIL-QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI-GGTYIVK 153 (201)
T ss_dssp SSCCC-----------CHHHHHHHHHH-TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred hhhhhccccccccccchhhHHHHHhhc-CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEE
Confidence 20 1 2468999999988876532 11 12378899999999 9999886
Q ss_pred eccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 294 HNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 294 ~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
... .....++...++. .|..+..
T Consensus 154 ~~~----~~~~~~l~~~l~~-~f~~v~~ 176 (201)
T 2plw_A 154 MYL----GSQTNNLKTYLKG-MFQLVHT 176 (201)
T ss_dssp EEC----STTHHHHHHHHHT-TEEEEEE
T ss_pred EeC----CCCHHHHHHHHHH-HHheEEE
Confidence 421 1224566666655 4765554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=110.26 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-CCCCCCCceeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-TKFGSGVVYDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~~~~~~~~fDlI 258 (343)
++.+|||||||+|.++..+++..+...++++ |.+..+.+.+++... .+. . ++.++.++..++ +....+++||.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~gi--D~s~~~l~~a~~~~~~~~l-~-nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGI--EVHSPGVGACLASAHEEGL-S-NLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHTTC-S-SEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEE--EecHHHHHHHHHHHHHhCC-C-cEEEEECCHHHHHHHHcCCCChheE
Confidence 5679999999999999999987766554554 555555554444333 333 2 467777655553 211246799999
Q ss_pred EEccccccCCchHH------HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc-CCcEEE
Q 019282 259 YASAVFLHMPDKLV------WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL-GLEYIG 320 (343)
Q Consensus 259 vs~~v~~hl~~~~~------~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343)
+++....+...... ..++++++++||| ||.+++......+ .+.+.+.+... +|+.+.
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp-GG~l~i~td~~~~----~~~~~~~~~~~~~~~~~~ 173 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQL-GGVFHMATDWEPY----AEHMLEVMSSIDGYKNLS 173 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEE-EEEEEEEESCHHH----HHHHHHHHHTSTTEEECC
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCC-CcEEEEEeCCHHH----HHHHHHHHHhCCCccccc
Confidence 99755433322221 2489999999999 9999987532211 34455556554 576543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-12 Score=113.75 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC-cC-CCCC--CCce
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD-FT-KFGS--GVVY 255 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d-l~-~~~~--~~~f 255 (343)
++.+|||+|||+|.++..++...+...++++|+++.+... ++++.. .+. .+++.++.++..+ +. .+.. +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~--a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY--AKKNVEQNNL-SDLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH--HHHHHHHTTC-TTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH--HHHHHHHcCC-CccEEEEEcchhhhhhhhhhcccCCcc
Confidence 5679999999999999999886655556666666555444 444333 333 3356777765443 22 1221 2589
Q ss_pred eEEEEccccccCCc-------------hHHHHHHHHHHhccCCCCcEEEEEec-----------cc-----cccCCCHHH
Q 019282 256 DLIYASAVFLHMPD-------------KLVWVGLERLASKLRPYDGRIFVSHN-----------IK-----FCSRLGGEE 306 (343)
Q Consensus 256 DlIvs~~v~~hl~~-------------~~~~~~L~~l~r~LkP~GG~lvi~~~-----------~~-----~~~~~~~~~ 306 (343)
|+|+++..+++... .....++.+++++||| ||.+.+... .. .......++
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp-gG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 220 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE-GGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAP 220 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHH-HTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHH
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec-CCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHH
Confidence 99999876655431 0112356777888888 777654310 00 001112478
Q ss_pred HHHHHHhcCCcEEEeee
Q 019282 307 CTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~ 323 (343)
+.++++++||+.++...
T Consensus 221 ~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 221 LKEELRIQGVPKVTYTE 237 (254)
T ss_dssp HHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcCCCceEEEE
Confidence 89999999999876543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-11 Score=106.89 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=92.8
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.++++.+|||||||+|.++..++...+...++++|+++.+...+ +++.. .++ .+++.+..++.. ..+...+.||
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A--~~N~~~~gl-~~~i~~~~~d~l--~~l~~~~~~D 86 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSA--VKNVEAHGL-KEKIQVRLANGL--AAFEETDQVS 86 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHH--HHHHHHTTC-TTTEEEEECSGG--GGCCGGGCCC
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHH--HHHHHHcCC-CceEEEEECchh--hhcccCcCCC
Confidence 45678899999999999999999865555667777777666665 43333 343 336777766332 2232223699
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+|+..++ +......++....+.|+| +|++++... .+.+.++++|.+.||..+...
T Consensus 87 ~IviaG~----Gg~~i~~Il~~~~~~L~~-~~~lVlq~~------~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 87 VITIAGM----GGRLIARILEEGLGKLAN-VERLILQPN------NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp EEEEEEE----CHHHHHHHHHHTGGGCTT-CCEEEEEES------SCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEcCC----ChHHHHHHHHHHHHHhCC-CCEEEEECC------CCHHHHHHHHHHCCCEEEEEE
Confidence 9987654 333345689999999999 999998753 258899999999999988764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=110.84 Aligned_cols=157 Identities=12% Similarity=0.025 Sum_probs=94.2
Q ss_pred CCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEc-ChhHHHHHHHHhcc-----c-CCCC-
Q 019282 161 EPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLER-DELSLMAAFRYELP-----S-QGLL- 232 (343)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdi-d~s~~~~a~a~~~~-----~-~~~~- 232 (343)
..|.....+.+.+.......++.+|||||||+|.++..++.. ....++++|+ ++..+ +.++++. . .+..
T Consensus 59 ~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~--~~a~~n~~~N~~~~~~~~~ 135 (281)
T 3bzb_A 59 HVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEIL--NSLESNIREHTANSCSSET 135 (281)
T ss_dssp ---CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHH--HHHHHHHHTTCC-------
T ss_pred eeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHH--HHHHHHHHHhhhhhccccc
Confidence 456667778888877665667889999999999999988874 3234556665 45444 4444333 1 1111
Q ss_pred --CCCcEEEecccCC-cCCCC---CCCceeEEEEccccccCCchHHHHHHHHHHhccC---CC-CcEEEEEecccc-ccC
Q 019282 233 --HKRPIIVRGEDMD-FTKFG---SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLR---PY-DGRIFVSHNIKF-CSR 301 (343)
Q Consensus 233 --~~~~~~~~~~~~d-l~~~~---~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~Lk---P~-GG~lvi~~~~~~-~~~ 301 (343)
..++.+...+..+ ..++. .+++||+|++..+++|.++... +++.+.++|+ |. ||++++...... ...
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~--ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~ 213 (281)
T 3bzb_A 136 VKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDA--LLRSVKMLLALPANDPTAVALVTFTHHRPHLA 213 (281)
T ss_dssp ---CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHH--HHHHHHHHBCCTTTCTTCEEEEEECC------
T ss_pred CCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHH--HHHHHHHHhcccCCCCCCEEEEEEEeeecccc
Confidence 0134444222112 11110 2468999999999988766544 9999999999 41 677766532111 101
Q ss_pred CCHHHHHHHHHhcC-CcEEEee
Q 019282 302 LGGEECTKRLTSLG-LEYIGKK 322 (343)
Q Consensus 302 ~~~~~l~~~L~~aG-f~~v~~~ 322 (343)
....++.+.++++| |++....
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEEE
T ss_pred hhHHHHHHHHHhcCCEEEEEec
Confidence 12356677889999 9987764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=124.92 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-----CCCCCCCcEEE
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-----QGLLHKRPIIV 239 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-----~~~~~~~~~~~ 239 (343)
.+..++.+.+.+...++.+|||||||+|.++..+++..+ ...++++|+++ .+.+.++++.. ......++.++
T Consensus 706 ~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~--emLe~AReRLa~~lnAkr~gl~nVefi 783 (950)
T 3htx_A 706 SKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP--KGLARAAKMLHVKLNKEACNVKSATLY 783 (950)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCH--HHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred HHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHHhhhccchhhcCCCceEEE
Confidence 344555555555556788999999999999999988542 23445555554 55554443211 00111256777
Q ss_pred ecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++..+++ + .++.||+|++..+++|++++....++++++++||| | .++++
T Consensus 784 qGDa~dLp-~-~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP-G-~LIIS 833 (950)
T 3htx_A 784 DGSILEFD-S-RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-K-LLIVS 833 (950)
T ss_dssp ESCTTSCC-T-TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC-S-EEEEE
T ss_pred ECchHhCC-c-ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC-C-EEEEE
Confidence 77555544 2 35789999999999999998877799999999999 8 66665
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=101.77 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK- 248 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~- 248 (343)
+.+.....+.++.+|||+|||+|.++..+++.++ ...++++|+++ . .. . .++.+..++..+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~--~~---------~--~~~~~~~~d~~~~~~~ 77 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M--DP---------I--VGVDFLQGDFRDELVM 77 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C--CC---------C--TTEEEEESCTTSHHHH
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-c--cc---------c--CcEEEEEcccccchhh
Confidence 3333334477889999999999999999998763 35666666655 2 11 1 245555543333210
Q ss_pred -----CCCCCceeEEEEccccccCCchHH---------HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc
Q 019282 249 -----FGSGVVYDLIYASAVFLHMPDKLV---------WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL 314 (343)
Q Consensus 249 -----~~~~~~fDlIvs~~v~~hl~~~~~---------~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a 314 (343)
...+++||+|++...+++.+.... ..+++++.++|+| ||.+++.... .....++.+.+.+.
T Consensus 78 ~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~~----~~~~~~~~~~~~~~ 152 (180)
T 1ej0_A 78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVVKVFQ----GEGFDEYLREIRSL 152 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEES----STTHHHHHHHHHHH
T ss_pred hhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC-CcEEEEEEec----CCcHHHHHHHHHHh
Confidence 013468999999999887765411 3589999999999 9999986421 12245666777664
Q ss_pred CCcEEEee
Q 019282 315 GLEYIGKK 322 (343)
Q Consensus 315 Gf~~v~~~ 322 (343)
|+.+...
T Consensus 153 -~~~~~~~ 159 (180)
T 1ej0_A 153 -FTKVKVR 159 (180)
T ss_dssp -EEEEEEE
T ss_pred -hhhEEee
Confidence 7766644
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=118.65 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+.....+.++.+|||||||+|.++..+++. +...++++|++ .+.+.++++.......+++.++.++..++.
T Consensus 51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 125 (376)
T 3r0q_C 51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT---KMADHARALVKANNLDHIVEVIEGSVEDIS- 125 (376)
T ss_dssp HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS---TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-
T ss_pred HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH---HHHHHHHHHHHHcCCCCeEEEEECchhhcC-
Confidence 3455555567788999999999999999999885 22345555555 344444444332223336777776444443
Q ss_pred CCCCCceeEEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..++||+|++..+.+++.. .....++..+.++||| ||.+++.
T Consensus 126 --~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp-gG~li~~ 168 (376)
T 3r0q_C 126 --LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKP-TGVMYPS 168 (376)
T ss_dssp --CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEE-EEEEESS
T ss_pred --cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCC-CeEEEEe
Confidence 3479999999776655532 3345589999999999 9999765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=112.59 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
...+.+.+.+.+.+.++.+|||||||+|.++..+++..+. ..++++|+++.. .+.++++.. .+. . ++.+..++.
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~--~~~a~~~~~~~g~-~-~v~~~~~d~ 135 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKI--CEIAKRNVERLGI-E-NVIFVCGDG 135 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHH--HHHHHHHHHHTTC-C-SEEEEESCG
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHH--HHHHHHHHHHcCC-C-CeEEEECCh
Confidence 3467777888888999999999999999999999987653 445666665544 444444332 333 2 355665533
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.+.. ..+++||+|++..+++|++ +++.++||| ||++++..
T Consensus 136 ~~~~--~~~~~fD~Iv~~~~~~~~~--------~~~~~~Lkp-gG~lvi~~ 175 (317)
T 1dl5_A 136 YYGV--PEFSPYDVIFVTVGVDEVP--------ETWFTQLKE-GGRVIVPI 175 (317)
T ss_dssp GGCC--GGGCCEEEEEECSBBSCCC--------HHHHHHEEE-EEEEEEEB
T ss_pred hhcc--ccCCCeEEEEEcCCHHHHH--------HHHHHhcCC-CcEEEEEE
Confidence 3322 1356899999999999987 357889999 99999863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-12 Score=111.50 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=82.1
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-CCCC---
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-TKFG--- 250 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~~~~--- 250 (343)
....++.+|||||||+|..+..+++.++ ...++++|+++ .+.+.++++.. .+. .+++.++.++..++ +.+.
T Consensus 54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 54 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINP--DCAAITQQMLNFAGL-QDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHTC-GGGEEEEESCHHHHGGGTTTTS
T ss_pred HHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCh--HHHHHHHHHHHHcCC-CCceEEEECCHHHHHHHHHHhc
Confidence 3345678999999999999999998764 34455555555 44554454333 333 23567777654332 2221
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc-CCcE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL-GLEY 318 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a-Gf~~ 318 (343)
..++||+|++....++..+... +++.+ ++||| ||++++..-. ..+..++.+.+.+. +|+.
T Consensus 131 ~~~~fD~V~~d~~~~~~~~~~~--~~~~~-~~Lkp-gG~lv~~~~~----~~~~~~~~~~l~~~~~~~~ 191 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLPDTL--LLEKC-GLLRK-GTVLLADNVI----VPGTPDFLAYVRGSSSFEC 191 (221)
T ss_dssp CCCCCSEEEECSCGGGHHHHHH--HHHHT-TCCCT-TCEEEESCCC----CCCCHHHHHHHHHCTTEEE
T ss_pred CCCceEEEEEcCCcccchHHHH--HHHhc-cccCC-CeEEEEeCCC----CcchHHHHHHHhhCCCceE
Confidence 1268999999887776654333 67777 99999 9999875321 12234556666554 4443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=105.09 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-C-CCCCCCcEEEecc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-Q-GLLHKRPIIVRGE 242 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~-~~~~~~~~~~~~~ 242 (343)
.......+.....+.++.+|||+|||+|.++..+++.+. ...++++|+++.....+ ++... . + ..++.+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a--~~~~~~~~g--~~~v~~~~~d 156 (258)
T 2pwy_A 81 YPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA--ERNVRAFWQ--VENVRFHLGK 156 (258)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHH--HHHHHHHCC--CCCEEEEESC
T ss_pred cchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHH--HHHHHHhcC--CCCEEEEECc
Confidence 344456677777889999999999999999999998743 45566666655544444 43322 2 3 2356666653
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
..+.+ + .++.||+|++ +.++... +++++.++|+| ||++++...... ...++.+.++++||..++..
T Consensus 157 ~~~~~-~-~~~~~D~v~~-----~~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~----~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 157 LEEAE-L-EEAAYDGVAL-----DLMEPWK--VLEKAALALKP-DRFLVAYLPNIT----QVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp GGGCC-C-CTTCEEEEEE-----ESSCGGG--GHHHHHHHEEE-EEEEEEEESCHH----HHHHHHHHHTTTTEEEEEEE
T ss_pred hhhcC-C-CCCCcCEEEE-----CCcCHHH--HHHHHHHhCCC-CCEEEEEeCCHH----HHHHHHHHHHHCCCceEEEE
Confidence 33331 2 3468999998 3455443 89999999999 999998753210 14567778888999877644
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-11 Score=109.33 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-CCCCCCCc
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-TKFGSGVV 254 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~~~~~~~~ 254 (343)
.+.++.+|||||||+|..+..+++.++ ...++++|+++... +.++++.. .+.. .++.++.++..+. +.....++
T Consensus 60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~--~~a~~~~~~~g~~-~~v~~~~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA--QVARENLQLAGVD-QRVTLREGPALQSLESLGECPA 136 (248)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHH--HHHHHHHHHTTCT-TTEEEEESCHHHHHHTCCSCCC
T ss_pred hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHH--HHHHHHHHHcCCC-CcEEEEEcCHHHHHHhcCCCCC
Confidence 445678999999999999999999776 45566666655444 44444333 3443 3677777655442 32222358
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
||+|++... ......+++++.++||| ||++++..
T Consensus 137 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp-GG~lv~~~ 170 (248)
T 3tfw_A 137 FDLIFIDAD-----KPNNPHYLRWALRYSRP-GTLIIGDN 170 (248)
T ss_dssp CSEEEECSC-----GGGHHHHHHHHHHTCCT-TCEEEEEC
T ss_pred eEEEEECCc-----hHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 999998653 22334589999999999 99998863
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-11 Score=115.12 Aligned_cols=118 Identities=10% Similarity=0.208 Sum_probs=79.1
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCC-CCcEEEecccCCcCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLH-KRPIIVRGEDMDFTK 248 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~-~~~~~~~~~~~dl~~ 248 (343)
+.+.+.+...++.+|||+|||+|.++..+++..+...++++|+++.. .+.++++.. .+..+ .++.+..+ |+.+
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~a--l~~Ar~n~~~ngl~~~~~v~~~~~---D~~~ 286 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMA--VASSRLNVETNMPEALDRCEFMIN---NALS 286 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHH--HHHHHHHHHHHCGGGGGGEEEEEC---STTT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHH--HHHHHHHHHHcCCCcCceEEEEec---hhhc
Confidence 34555566667789999999999999999998766666666666544 444444332 22211 12444554 3333
Q ss_pred CCCCCceeEEEEcccccc---CCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 249 FGSGVVYDLIYASAVFLH---MPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~h---l~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
...+++||+|+++..+|+ +.+.....+++++.++||| ||.+++..
T Consensus 287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~iv~ 334 (375)
T 4dcm_A 287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 334 (375)
T ss_dssp TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC-CcEEEEEE
Confidence 334678999999999875 3444445689999999999 99999875
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=110.52 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=73.1
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CCCCCc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FGSGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~~~~~ 254 (343)
..+.++.+|||||||+|..+..+++..+...++++|+++..... ++++.. .+. ..++.++.++..+... . .+++
T Consensus 67 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~--a~~~~~~~~~-~~~v~~~~~d~~~~~~~~-~~~~ 142 (232)
T 3ntv_A 67 IRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQY--AKQNLATYHF-ENQVRIIEGNALEQFENV-NDKV 142 (232)
T ss_dssp HHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHH--HHHHHHHTTC-TTTEEEEESCGGGCHHHH-TTSC
T ss_pred HhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHH--HHHHHHHcCC-CCcEEEEECCHHHHHHhh-ccCC
Confidence 34456789999999999999999986665666666666554444 444333 333 2367777775544321 1 1578
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
||+|++..... . ...+++++.++||| ||++++.
T Consensus 143 fD~V~~~~~~~---~--~~~~l~~~~~~Lkp-gG~lv~d 175 (232)
T 3ntv_A 143 YDMIFIDAAKA---Q--SKKFFEIYTPLLKH-QGLVITD 175 (232)
T ss_dssp EEEEEEETTSS---S--HHHHHHHHGGGEEE-EEEEEEE
T ss_pred ccEEEEcCcHH---H--HHHHHHHHHHhcCC-CeEEEEe
Confidence 99999764432 2 33489999999999 9999885
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=106.97 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCc-eeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVV-YDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~-fDlI 258 (343)
++.+|||+|||+|.++..++... .. .++++|.++.+.+.++++.. .+....++.++.++..++.....+++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CC--EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEE
Confidence 57899999999999999877632 12 45666666666666555433 33311356677664444332112468 9999
Q ss_pred EEccccccCCchHHHHHHHHH--HhccCCCCcEEEEEec
Q 019282 259 YASAVFLHMPDKLVWVGLERL--ASKLRPYDGRIFVSHN 295 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l--~r~LkP~GG~lvi~~~ 295 (343)
++...++ ... ...+++.+ .++|+| ||.+++...
T Consensus 130 ~~~~~~~-~~~--~~~~l~~~~~~~~Lkp-gG~l~i~~~ 164 (201)
T 2ift_A 130 FLDPPFH-FNL--AEQAISLLCENNWLKP-NALIYVETE 164 (201)
T ss_dssp EECCCSS-SCH--HHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred EECCCCC-Ccc--HHHHHHHHHhcCccCC-CcEEEEEEC
Confidence 9988864 333 34488888 678999 999998754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=119.79 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+.+.+...++.+|||||||+|.++..+++. +... ++++|.+. +.+.++++.. .++ ..++.++.++..++
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~--V~gvD~s~-~l~~A~~~~~~~gl-~~~v~~~~~d~~~~- 219 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARK--IYAVEAST-MAQHAEVLVKSNNL-TDRIVVIPGKVEEV- 219 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSE--EEEEECHH-HHHHHHHHHHHTTC-TTTEEEEESCTTTC-
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHc-CCCE--EEEEEcHH-HHHHHHHHHHHcCC-CCcEEEEECchhhC-
Confidence 3444555555667889999999999999988873 3334 55555555 5555555433 333 33677777644433
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...++||+|++..+++|+..+.....+.+++++||| ||.+++.
T Consensus 220 --~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp-gG~li~~ 262 (480)
T 3b3j_A 220 --SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKP-SGNMFPT 262 (480)
T ss_dssp --CCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE-EEEEESC
T ss_pred --ccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 234689999999888888766666688899999999 9999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=107.49 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
.....+...+.+.++.+|||+|||+|.++..+++.+ +...++++|+++ .+.+.++++.. .+. ..++.+..++
T Consensus 99 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~-~~~v~~~~~d--- 172 (277)
T 1o54_A 99 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGL-IERVTIKVRD--- 172 (277)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTC-GGGEEEECCC---
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHcCC-CCCEEEEECC---
Confidence 344566667788999999999999999999999874 344455555444 45444444332 222 1245555553
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+.+...++.||+|++. .+++.. +++++.++|+| ||.+++...... ...++.+.|++.||..++..
T Consensus 173 ~~~~~~~~~~D~V~~~-----~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~----~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 173 ISEGFDEKDVDALFLD-----VPDPWN--YIDKCWEALKG-GGRFATVCPTTN----QVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp GGGCCSCCSEEEEEEC-----CSCGGG--THHHHHHHEEE-EEEEEEEESSHH----HHHHHHHHHHHSSEEEEEEE
T ss_pred HHHcccCCccCEEEEC-----CcCHHH--HHHHHHHHcCC-CCEEEEEeCCHH----HHHHHHHHHHHCCCceeEEE
Confidence 3322234689999983 444433 89999999999 999998763110 14567778888999877644
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-11 Score=106.84 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=93.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.++++.+|||||||+|.++..++...+...++++|+++.+...+. ++.+ .++ .+++.+..++..+.. ..++.||
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~--~N~~~~gl-~~~I~~~~gD~l~~~--~~~~~~D 92 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL--KNVSEHGL-TSKIDVRLANGLSAF--EEADNID 92 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH--HHHHHTTC-TTTEEEEECSGGGGC--CGGGCCC
T ss_pred hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHHcCC-CCcEEEEECchhhcc--ccccccC
Confidence 467788999999999999999998654455677777776666664 3333 343 346777776443332 2233799
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+|+..++- ......++....+.|++ +|+|+++.. .+.+.++++|.++||+.+...
T Consensus 93 ~IviaGmG----g~lI~~IL~~~~~~l~~-~~~lIlqp~------~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 93 TITICGMG----GRLIADILNNDIDKLQH-VKTLVLQPN------NREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEEEEEC----HHHHHHHHHHTGGGGTT-CCEEEEEES------SCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEeCCc----hHHHHHHHHHHHHHhCc-CCEEEEECC------CChHHHHHHHHHCCCEEEEEE
Confidence 98875443 33445588999999999 999988852 348899999999999988755
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=107.86 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCCC-CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc---
Q 019282 168 DVFEFLAEASHIT-PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--- 243 (343)
Q Consensus 168 ~~~~~l~~~~~l~-~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--- 243 (343)
..++.+.+...+. ++.+|||||||||.++..+++. +.. .++++|.++.|.+.+.+... +........
T Consensus 23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~--~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~ 93 (232)
T 3opn_A 23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAK--LVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRN 93 (232)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCS--EEEEECSSCCCCCHHHHTCT------TEEEECSCCGGG
T ss_pred HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCC--EEEEEcCCHHHHHHHHHhCc------cccccccceEEE
Confidence 3444455555554 4679999999999999999885 223 45555555555444333111 111110000
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccc-----------------cCCCHHH
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFC-----------------SRLGGEE 306 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~-----------------~~~~~~~ 306 (343)
....++. ...||.+.+..++.++ ..+|.+++++||| ||.+++.....+. .....++
T Consensus 94 ~~~~~~~-~~~~d~~~~D~v~~~l-----~~~l~~i~rvLkp-gG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 94 AVLADFE-QGRPSFTSIDVSFISL-----DLILPPLYEILEK-NGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp CCGGGCC-SCCCSEEEECCSSSCG-----GGTHHHHHHHSCT-TCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred eCHhHcC-cCCCCEEEEEEEhhhH-----HHHHHHHHHhccC-CCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHH
Confidence 0101111 1124555555555444 2389999999999 9999886321110 0012678
Q ss_pred HHHHHHhcCCcEEEeee
Q 019282 307 CTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~ 323 (343)
+.+.++++||+++....
T Consensus 167 l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 167 VLKTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEE
Confidence 99999999999887664
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=101.99 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
..+...+.+.+.+.++.+|||||||+|.++..+++..+ ...++++|+++... +.+++... .+. . ++.+..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~--~~a~~~~~~~~~-~-~v~~~~~d~~ 138 (215)
T 2yxe_A 63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA--EKAERTLRKLGY-D-NVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH--HHHHHHHHHHTC-T-TEEEEESCGG
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH--HHHHHHHHHcCC-C-CeEEEECCcc
Confidence 45666677777888999999999999999999998773 24556666655444 44443322 232 1 3555554321
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
..+..+++||+|++..+++|+++ ++.++||| ||++++...
T Consensus 139 --~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~p-gG~lv~~~~ 178 (215)
T 2yxe_A 139 --LGYEPLAPYDRIYTTAAGPKIPE--------PLIRQLKD-GGKLLMPVG 178 (215)
T ss_dssp --GCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEE-EEEEEEEES
T ss_pred --cCCCCCCCeeEEEECCchHHHHH--------HHHHHcCC-CcEEEEEEC
Confidence 11222568999999999998873 68999999 999998864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-11 Score=106.70 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=82.0
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-----CCCCCCCcEEEecccCC-cCCCCC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-----QGLLHKRPIIVRGEDMD-FTKFGS 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-----~~~~~~~~~~~~~~~~d-l~~~~~ 251 (343)
...++.+|||||||+|.++..+++..+...++++|++..++..+ +++.. ......++.++.++..+ ++.+..
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A--~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~ 120 (235)
T 3ckk_A 43 RAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYV--QDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120 (235)
T ss_dssp ---CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHH--HHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC
T ss_pred ccCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHH--HHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC
Confidence 34566799999999999999999877666666666655554433 32211 00112357777776554 322224
Q ss_pred CCceeEEEEccccccCCchH------HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC-CcEEEe
Q 019282 252 GVVYDLIYASAVFLHMPDKL------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG-LEYIGK 321 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG-f~~v~~ 321 (343)
+++||.|++...-.+..... ...+++++.++||| ||.|++....... .+.+.+.+.+.| |+.+..
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp-GG~l~~~td~~~~----~~~~~~~l~~~~~f~~~~~ 192 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV-GGLVYTITDVLEL----HDWMCTHFEEHPLFERVPL 192 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEE-EEEEEEEESCHHH----HHHHHHHHHTSTTEEEECG
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC-CCEEEEEeCCHHH----HHHHHHHHHHCCCccccCc
Confidence 67899998754332221100 12489999999999 9999887432111 344556677776 766543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=109.72 Aligned_cols=156 Identities=14% Similarity=0.048 Sum_probs=95.4
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343)
.+.+..+......+...+.+.++.+|||+|||+|..+..+++.+++ ...++++|.+..+.+.++++.. .+.. ++.+
T Consensus 97 ~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~-~~~v~avD~s~~~l~~a~~~~~~~g~~--~v~~ 173 (315)
T 1ixk_A 97 TGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRN-DGVIYAFDVDENRLRETRLNLSRLGVL--NVIL 173 (315)
T ss_dssp TTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHTCC--SEEE
T ss_pred cceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC--eEEE
Confidence 4444344444444444567889999999999999999999987643 1234445555555554444332 2332 4566
Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
+.++..++.. .++.||+|++. .++++.++. ....+|+++.++||| ||+++++.-. .
T Consensus 174 ~~~D~~~~~~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp-GG~lv~stcs-~ 249 (315)
T 1ixk_A 174 FHSSSLHIGE--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCS-L 249 (315)
T ss_dssp ESSCGGGGGG--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC-C
T ss_pred EECChhhccc--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeCC-C
Confidence 6654444432 25689999984 334333321 113689999999999 9999886421 1
Q ss_pred ccCCCHHHHHHHHHhcCCcEEEee
Q 019282 299 CSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
...-..+.+...+++.||+.+...
T Consensus 250 ~~~Ene~~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 250 EPEENEFVIQWALDNFDVELLPLK 273 (315)
T ss_dssp CGGGTHHHHHHHHHHSSEEEECCC
T ss_pred ChHHhHHHHHHHHhcCCCEEecCC
Confidence 111125667778888999877543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=105.32 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=92.2
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.++++.+|||||||+|.++..++...+...++++|+++.++..+.. +.+ .++ .+++.+..++..+.. .++..||
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~--N~~~~gl-~~~I~v~~gD~l~~~--~~~~~~D 92 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK--QVRSSGL-TEQIDVRKGNGLAVI--EKKDAID 92 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH--HHHHTTC-TTTEEEEECSGGGGC--CGGGCCC
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH--HHHHcCC-CceEEEEecchhhcc--Ccccccc
Confidence 4677889999999999999999986544566777777776666643 333 343 336777766433322 2223599
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+|++.++ +......+|....+.|++ +|+|++... .+.+.++++|.+.||..+...
T Consensus 93 ~Iviagm----Gg~lI~~IL~~~~~~L~~-~~~lIlq~~------~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 93 TIVIAGM----GGTLIRTILEEGAAKLAG-VTKLILQPN------IAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp EEEEEEE----CHHHHHHHHHHTGGGGTT-CCEEEEEES------SCHHHHHHHHHHHTEEEEEEE
T ss_pred EEEEeCC----chHHHHHHHHHHHHHhCC-CCEEEEEcC------CChHHHHHHHHHCCCEEEEEE
Confidence 9987543 334455689999999999 999998852 358899999999999976544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-11 Score=114.06 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=74.9
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
..+.++.+|||||||+|.++..+++. +...++++|+++ +.+.++++.......+++.++.++..+++ + ++++||
T Consensus 62 ~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~---~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~~fD 135 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS---ISDYAVKIVKANKLDHVVTIIKGKVEEVE-L-PVEKVD 135 (349)
T ss_dssp HHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST---HHHHHHHHHHHTTCTTTEEEEESCTTTCC-C-SSSCEE
T ss_pred cccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH---HHHHHHHHHHHcCCCCcEEEEECcHHHcc-C-CCCceE
Confidence 34567889999999999999999985 334566666662 44444444332223335778877555543 2 357999
Q ss_pred EEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 257 LIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 257 lIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|++..+.+++ .......++..+.++||| ||.++..
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkp-gG~li~~ 172 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARDKWLAP-DGLIFPD 172 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEE-EEEEESC
T ss_pred EEEEccccccccCchhHHHHHHHHHHhCCC-CCEEccc
Confidence 99998765444 222344589999999999 9998754
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=102.85 Aligned_cols=109 Identities=11% Similarity=0.090 Sum_probs=70.3
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
..++.+|||+|||+|.++..+++. +.. .++++|.++.+.+.++++........++.++.++..++... ..+.||+|
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~fD~i 104 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTGRFDLV 104 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCSCEEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-hcCCCCEE
Confidence 567889999999999999999875 333 45555555555555554433221122456666543332111 24579999
Q ss_pred EEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEec
Q 019282 259 YASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHN 295 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~ 295 (343)
++...++. ......++.+. ++|+| ||.+++...
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~-gG~l~~~~~ 139 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSE-QVMVVCETD 139 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCC-CcEEEEEEC
Confidence 99877632 22334677776 99999 999998753
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=112.40 Aligned_cols=113 Identities=15% Similarity=0.252 Sum_probs=76.0
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+.+...+.++.+|||||||+|.++..+++. +...++++|+++ +...++++.. .+. ..++.++.++..+++ +
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~---~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~-~ 127 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE---ILYQAMDIIRLNKL-EDTITLIKGKIEEVH-L 127 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST---HHHHHHHHHHHTTC-TTTEEEEESCTTTSC-C
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH---HHHHHHHHHHHcCC-CCcEEEEEeeHHHhc-C
Confidence 55555566778899999999999999999885 333566666663 4444444333 333 236777776544443 2
Q ss_pred CCCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEE
Q 019282 250 GSGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIF 291 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lv 291 (343)
++++||+|++..+.+.+ .......++.++.++||| ||.++
T Consensus 128 -~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~li 168 (340)
T 2fyt_A 128 -PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK-GGSVY 168 (340)
T ss_dssp -SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE-EEEEE
T ss_pred -CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC-CcEEE
Confidence 34789999997743222 122344589999999999 99987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=111.49 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.+..+|||||||+|.++..+++.++...++++|+ +.+.+.+++ . .++.++.+ |+.+ +.. .||+
T Consensus 190 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-----~--~~v~~~~~---d~~~-~~~-~~D~ 254 (358)
T 1zg3_A 190 VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ---PQVVGNLTG-----N--ENLNFVGG---DMFK-SIP-SADA 254 (358)
T ss_dssp HHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC---HHHHSSCCC-----C--SSEEEEEC---CTTT-CCC-CCSE
T ss_pred hccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc---HHHHhhccc-----C--CCcEEEeC---ccCC-CCC-CceE
Confidence 345668999999999999999999887655555554 234432221 1 23556655 3332 222 4999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCC--CcEEEEEecc---c--------c-------------ccCCCHHHHHHHH
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPY--DGRIFVSHNI---K--------F-------------CSRLGGEECTKRL 311 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~--GG~lvi~~~~---~--------~-------------~~~~~~~~l~~~L 311 (343)
|++..++||++++....+|++++++|+|. ||+++|.... . . ...++.+++.+++
T Consensus 255 v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 334 (358)
T 1zg3_A 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLI 334 (358)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHH
Confidence 99999999999988667999999999983 5888775311 0 0 0112488999999
Q ss_pred HhcCCcEEEeee
Q 019282 312 TSLGLEYIGKKT 323 (343)
Q Consensus 312 ~~aGf~~v~~~~ 323 (343)
+++||+.++...
T Consensus 335 ~~aGf~~~~~~~ 346 (358)
T 1zg3_A 335 YDAGFSSYKITP 346 (358)
T ss_dssp HHTTCCEEEEEE
T ss_pred HHcCCCeeEEEe
Confidence 999999887654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-12 Score=116.62 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||+|||+|.++..+++. +..++++|.++.+.+.++++.. .++ ..++.++.++..++. .+++||+|
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~---~~~~~D~v 148 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT----GMRVIAIDIDPVKIALARNNAEVYGI-ADKIEFICGDFLLLA---SFLKADVV 148 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTC-GGGEEEEESCHHHHG---GGCCCSEE
T ss_pred cCCCEEEECccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCC-CcCeEEEECChHHhc---ccCCCCEE
Confidence 36889999999999999999984 2345555555555555554433 222 125667766444433 45799999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------cc-cCCCHHHHHHHHHhcCCcEEEee
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------FC-SRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------~~-~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+++..+++...... .+.+++++|+| ||.+++..... +. .....+.+...+...|...+...
T Consensus 149 ~~~~~~~~~~~~~~--~~~~~~~~L~p-gG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 149 FLSPPWGGPDYATA--ETFDIRTMMSP-DGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp EECCCCSSGGGGGS--SSBCTTTSCSS-CHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred EECCCcCCcchhhh--HHHHHHhhcCC-cceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 99999998877654 67789999999 99976652111 11 12236777777777776655433
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=104.67 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+...+.+.+.+.++.+|||||||+|.++..+++..+ ..++++|+++.....+ +++.. .+.. ++.+..++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a--~~~~~~~~~~--~v~~~~~d~- 149 (235)
T 1jg1_A 76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFA--KRNLERAGVK--NVHVILGDG- 149 (235)
T ss_dssp CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHH--HHHHHHTTCC--SEEEEESCG-
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHH--HHHHHHcCCC--CcEEEECCc-
Confidence 455666677777888999999999999999999999776 5666666666554444 43322 3332 355555532
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
...+....+||+|++..+++++++ ++.++||| ||++++..+
T Consensus 150 -~~~~~~~~~fD~Ii~~~~~~~~~~--------~~~~~L~p-gG~lvi~~~ 190 (235)
T 1jg1_A 150 -SKGFPPKAPYDVIIVTAGAPKIPE--------PLIEQLKI-GGKLIIPVG 190 (235)
T ss_dssp -GGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEE-EEEEEEEEC
T ss_pred -ccCCCCCCCccEEEECCcHHHHHH--------HHHHhcCC-CcEEEEEEe
Confidence 222323346999999999988764 57899999 999999864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=111.28 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+.+.+...++.+|||+|||+|.++..+++..+...++++|+++.....+ ++... .+. ...++.+ |..
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a--~~~~~~~~~---~~~~~~~---d~~ 255 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEAS--RATLAANGV---EGEVFAS---NVF 255 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHH--HHHHHHTTC---CCEEEEC---STT
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHHHHhCC---CCEEEEc---ccc
Confidence 34455555555567799999999999999999877656677777766554444 43322 222 2334444 333
Q ss_pred CCCCCCceeEEEEccccccC---CchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 248 KFGSGVVYDLIYASAVFLHM---PDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl---~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+.. +++||+|+++..+|+. .......++++++++||| ||.+++..+
T Consensus 256 ~~~-~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~ 304 (343)
T 2pjd_A 256 SEV-KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (343)
T ss_dssp TTC-CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE-EEEEEEEEE
T ss_pred ccc-cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC-CcEEEEEEc
Confidence 332 5789999999999763 333455699999999999 999998753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=113.59 Aligned_cols=124 Identities=7% Similarity=-0.045 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHH-----HHHhccc-CCCCCCCcEEEe
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAA-----FRYELPS-QGLLHKRPIIVR 240 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a-----~a~~~~~-~~~~~~~~~~~~ 240 (343)
..+...+.+.+.+.++.+|||||||+|.++..+++..+...++++|++......+ .++++.. .+....++.++.
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 4556667777888999999999999999999999877655566666666544433 1133222 332123566665
Q ss_pred cccCCcC-CCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 241 GEDMDFT-KFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 241 ~~~~dl~-~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+++.... .+. ..++||+|+++..+ +.+ .....|+++.++||| ||++++..
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~--d~~~~L~el~r~LKp-GG~lVi~d 359 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDE--DLNKKVEKILQTAKV-GCKIISLK 359 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCH--HHHHHHHHHHTTCCT-TCEEEESS
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccc--cHHHHHHHHHHhCCC-CeEEEEee
Confidence 4322110 010 13689999987666 333 344589999999999 99999873
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-11 Score=106.25 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=75.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-C
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-T 247 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~ 247 (343)
...+...+...++.+|||||||+|..+..+++.++...+++ +|.++.+.+.+++... .+. ..++.++.++..+. +
T Consensus 43 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~--vD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 43 MESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVS--IERDERRYEEAHKHVKALGL-ESRIELLFGDALQLGE 119 (233)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEE--ECCCHHHHHHHHHHHHHTTC-TTTEEEECSCGGGSHH
T ss_pred HHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHHHcCC-CCcEEEEECCHHHHHH
Confidence 33343334455778999999999999999999876444444 4554455555554433 333 23566666543332 1
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+++||+|++....+ ....+++.+.++|+| ||++++.
T Consensus 120 ~~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~p-gG~lv~~ 159 (233)
T 2gpy_A 120 KLELYPLFDVLFIDAAKG-----QYRRFFDMYSPMVRP-GGLILSD 159 (233)
T ss_dssp HHTTSCCEEEEEEEGGGS-----CHHHHHHHHGGGEEE-EEEEEEE
T ss_pred hcccCCCccEEEECCCHH-----HHHHHHHHHHHHcCC-CeEEEEE
Confidence 110146899999977653 233489999999999 9999886
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=108.34 Aligned_cols=123 Identities=17% Similarity=0.080 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHH--cCCCceEEEEcChhHHHHHHHHhcccC----CCCCCC------
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRY--LNPENFHCLERDELSLMAAFRYELPSQ----GLLHKR------ 235 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~--~~~~~~~vvdid~s~~~~a~a~~~~~~----~~~~~~------ 235 (343)
.+++.+.+.....++.+|||+|||+|.++..+++. .+...++++|+++.....+ ++.... +... +
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A--~~~~~~~~~~~~~~-~~~~~~~ 114 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELA--AKNLALLSPAGLTA-RELERRE 114 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHH--HHHHHTTSHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHH--HHHHHHhhhccccc-cchhhhh
Confidence 56666665544446779999999999999999886 3334555666655554444 432211 1100 1
Q ss_pred -------------------cE-------------EEecccCCcCCC---CCCCceeEEEEccccccCCc-------hHHH
Q 019282 236 -------------------PI-------------IVRGEDMDFTKF---GSGVVYDLIYASAVFLHMPD-------KLVW 273 (343)
Q Consensus 236 -------------------~~-------------~~~~~~~dl~~~---~~~~~fDlIvs~~v~~hl~~-------~~~~ 273 (343)
+. +..++..+.... ...+.||+|+++..+.+... ....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~ 194 (250)
T 1o9g_A 115 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA 194 (250)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred hhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHH
Confidence 22 555533221100 02348999999877765543 3445
Q ss_pred HHHHHHHhccCCCCcEEEEEe
Q 019282 274 VGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 274 ~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.++++++++||| ||++++..
T Consensus 195 ~~l~~~~~~Lkp-gG~l~~~~ 214 (250)
T 1o9g_A 195 GLLRSLASALPA-HAVIAVTD 214 (250)
T ss_dssp HHHHHHHHHSCT-TCEEEEEE
T ss_pred HHHHHHHHhcCC-CcEEEEeC
Confidence 689999999999 99999853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-10 Score=100.58 Aligned_cols=131 Identities=10% Similarity=0.047 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~ 247 (343)
....+....++.++.+|||+|||+|.++..+++. ... ++++|.++.+.+.++++.. .+. ..++.+..+ |+.
T Consensus 79 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~---d~~ 150 (248)
T 2yvl_A 79 DSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGE--VWTFEAVEEFYKTAQKNLKKFNL-GKNVKFFNV---DFK 150 (248)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSE--EEEECSCHHHHHHHHHHHHHTTC-CTTEEEECS---CTT
T ss_pred hHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCE--EEEEecCHHHHHHHHHHHHHcCC-CCcEEEEEc---Chh
Confidence 3456666778889999999999999999999986 344 4555555555555554433 232 225555554 333
Q ss_pred CCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 248 KFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 248 ~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+.. .++.||+|++. .+++.. +++++.++|+| ||++++...... ...++.+.+.+. |..++
T Consensus 151 ~~~~~~~~~D~v~~~-----~~~~~~--~l~~~~~~L~~-gG~l~~~~~~~~----~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 151 DAEVPEGIFHAAFVD-----VREPWH--YLEKVHKSLME-GAPVGFLLPTAN----QVIKLLESIENY-FGNLE 211 (248)
T ss_dssp TSCCCTTCBSEEEEC-----SSCGGG--GHHHHHHHBCT-TCEEEEEESSHH----HHHHHHHHSTTT-EEEEE
T ss_pred hcccCCCcccEEEEC-----CcCHHH--HHHHHHHHcCC-CCEEEEEeCCHH----HHHHHHHHHHhh-CCcce
Confidence 332 35689999983 444433 89999999999 999998864210 134555666666 76554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-11 Score=126.04 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-CCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-GLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+.++.+|||||||+|.++..+++ .+..|+|||.+..+++.|+..... +.. .+.+..++..++.....+++||+
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~----~ga~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLAS----KGATIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHHHHHCCTTSCSE
T ss_pred cCCCCeEEEECCCCcHHHHHHHh----CCCEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHHhhhccCCCccE
Confidence 34568999999999999999998 566788888888888777765442 221 45666665555532223578999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+|..++||++++.....+..+.+.|++ +|..++.
T Consensus 138 v~~~e~~ehv~~~~~~~~~~~~~~tl~~-~~~~~~~ 172 (569)
T 4azs_A 138 AIGLSVFHHIVHLHGIDEVKRLLSRLAD-VTQAVIL 172 (569)
T ss_dssp EEEESCHHHHHHHHCHHHHHHHHHHHHH-HSSEEEE
T ss_pred EEECcchhcCCCHHHHHHHHHHHHHhcc-ccceeeE
Confidence 9999999999987654456778888998 8877654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=103.86 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC--CC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG--SG 252 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~--~~ 252 (343)
...++.+|||||||+|..+..+++.++ ...++++|+++.. .+.++++.. .+. .+++.++.++..+.. .+. ..
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~--~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~ 131 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKH--ADIARSNIERANL-NDRVEVRTGLALDSLQQIENEKY 131 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHH--HHHHHHHHHHTTC-TTTEEEEESCHHHHHHHHHHTTC
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHH--HHHHHHHHHHcCC-CCcEEEEEcCHHHHHHHHHhcCC
Confidence 345678999999999999999999776 4555555555544 444444333 343 335677766443321 111 11
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++||+|++..... ....+++++.++|+| ||++++.
T Consensus 132 ~~fD~v~~d~~~~-----~~~~~l~~~~~~L~p-gG~lv~~ 166 (223)
T 3duw_A 132 EPFDFIFIDADKQ-----NNPAYFEWALKLSRP-GTVIIGD 166 (223)
T ss_dssp CCCSEEEECSCGG-----GHHHHHHHHHHTCCT-TCEEEEE
T ss_pred CCcCEEEEcCCcH-----HHHHHHHHHHHhcCC-CcEEEEe
Confidence 5799999875532 234589999999999 9988876
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-11 Score=101.74 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=73.9
Q ss_pred HHHHHHHHhc-CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEAS-HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~-~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
.+.+.+.+.+ ...++.+|||+|||+|.++..++.. +...++++|+++. +.+.++++.. .+. ..++.++.++..+
T Consensus 30 ~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~--~~~~a~~~~~~~~~-~~~~~~~~~d~~~ 105 (187)
T 2fhp_A 30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFA--ALKVIKENIAITKE-PEKFEVRKMDANR 105 (187)
T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHH--HHHHHHHHHHHHTC-GGGEEEEESCHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHH--HHHHHHHHHHHhCC-CcceEEEECcHHH
Confidence 3444444443 3457889999999999999988873 3344555555554 4444444332 222 2246666664333
Q ss_pred cCC-CC-CCCceeEEEEccccccCCchHHHHHHHHH--HhccCCCCcEEEEEec
Q 019282 246 FTK-FG-SGVVYDLIYASAVFLHMPDKLVWVGLERL--ASKLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~-~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l--~r~LkP~GG~lvi~~~ 295 (343)
... .. .+++||+|++...++. .... ..++.+ .++|+| ||.+++...
T Consensus 106 ~~~~~~~~~~~fD~i~~~~~~~~-~~~~--~~~~~l~~~~~L~~-gG~l~~~~~ 155 (187)
T 2fhp_A 106 ALEQFYEEKLQFDLVLLDPPYAK-QEIV--SQLEKMLERQLLTN-EAVIVCETD 155 (187)
T ss_dssp HHHHHHHTTCCEEEEEECCCGGG-CCHH--HHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEECCCCCc-hhHH--HHHHHHHHhcccCC-CCEEEEEeC
Confidence 211 00 1568999999888652 2222 256667 899999 999998753
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-11 Score=101.82 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC-CCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG-SGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~-~~~~f 255 (343)
++++.+|||+|||+|.++..+++... .++++|.++.+.+.++++.. .+. ++.++.++..+.. ... ..++|
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~ 111 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGW----EAVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC----EEEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHHHHhhhccCCce
Confidence 33678999999999999999988532 25555555566555554332 222 4566655333321 111 12479
Q ss_pred eEEEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEec
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHN 295 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~ 295 (343)
|+|++...++ .... ..++.+. ++||| ||.+++...
T Consensus 112 D~i~~~~~~~--~~~~--~~~~~~~~~~~L~~-gG~~~~~~~ 148 (171)
T 1ws6_A 112 TVAFMAPPYA--MDLA--ALFGELLASGLVEA-GGLYVLQHP 148 (171)
T ss_dssp EEEEECCCTT--SCTT--HHHHHHHHHTCEEE-EEEEEEEEE
T ss_pred EEEEECCCCc--hhHH--HHHHHHHhhcccCC-CcEEEEEeC
Confidence 9999998775 2222 2566666 99999 999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-10 Score=97.45 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-------ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE-e
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-------NFHCLERDELSLMAAFRYELPSQGLLHKRPIIV-R 240 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-------~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~-~ 240 (343)
+.+.......++++.+|||||||+|.++..+++.++.. ...++++|.++. . .. .++.++ .
T Consensus 10 l~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~------~----~~--~~~~~~~~ 77 (196)
T 2nyu_A 10 LLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI------F----PL--EGATFLCP 77 (196)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC------C----CC--TTCEEECS
T ss_pred HHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc------c----cC--CCCeEEEe
Confidence 44444444456888999999999999999999986541 023444444331 0 01 134444 4
Q ss_pred cccCCcCC------CCCCCceeEEEEccccccCC----chH-----HHHHHHHHHhccCCCCcEEEEEeccccccCCCHH
Q 019282 241 GEDMDFTK------FGSGVVYDLIYASAVFLHMP----DKL-----VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGE 305 (343)
Q Consensus 241 ~~~~dl~~------~~~~~~fDlIvs~~v~~hl~----~~~-----~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~ 305 (343)
++..+... ...+++||+|++...++... +.. ...+++++.++||| ||++++..... ....
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~----~~~~ 152 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP-GGTFLCKTWAG----SQSR 152 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEECCS----GGGH
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC-CCEEEEEecCC----ccHH
Confidence 32221110 01235899999976554322 221 13589999999999 99999874211 1134
Q ss_pred HHHHHHHhcCCcEEEe
Q 019282 306 ECTKRLTSLGLEYIGK 321 (343)
Q Consensus 306 ~l~~~L~~aGf~~v~~ 321 (343)
++...+... |..+..
T Consensus 153 ~~~~~l~~~-f~~v~~ 167 (196)
T 2nyu_A 153 RLQRRLTEE-FQNVRI 167 (196)
T ss_dssp HHHHHHHHH-EEEEEE
T ss_pred HHHHHHHHH-hcceEE
Confidence 555555543 554443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=105.35 Aligned_cols=108 Identities=23% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCCC---
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFGS--- 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~~--- 251 (343)
...++.+|||||||+|..+..+++.++ ...++++|+++.. .+.+++... .+. .+++.++.++..+.. ....
T Consensus 61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~--~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~ 137 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKS--TALAKEYWEKAGL-SDKIGLRLSPAKDTLAELIHAGQ 137 (225)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHH--HHHHHHHHHHTTC-TTTEEEEESCHHHHHHHHHTTTC
T ss_pred HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHH--HHHHHHHHHHCCC-CCceEEEeCCHHHHHHHhhhccC
Confidence 344677999999999999999998775 4555666665544 444444333 333 335777766443321 1111
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.++||+|++... ......+++++.++||| ||++++..
T Consensus 138 ~~~fD~v~~~~~-----~~~~~~~l~~~~~~L~p-gG~lv~~~ 174 (225)
T 3tr6_A 138 AWQYDLIYIDAD-----KANTDLYYEESLKLLRE-GGLIAVDN 174 (225)
T ss_dssp TTCEEEEEECSC-----GGGHHHHHHHHHHHEEE-EEEEEEEC
T ss_pred CCCccEEEECCC-----HHHHHHHHHHHHHhcCC-CcEEEEeC
Confidence 168999997543 22334589999999999 99998863
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=103.32 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHH----cCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc--CCCCCCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRY----LNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF--TKFGSGV 253 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~----~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl--~~~~~~~ 253 (343)
.++.+|||||||+|..+..+++. .+...++++|+++.. .+.++ +. ..++.++.++..++ .......
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~--l~~a~-----~~-~~~v~~~~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR--CQIPA-----SD-MENITLHQGDCSDLTTFEHLREM 151 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT--CCCCG-----GG-CTTEEEEECCSSCSGGGGGGSSS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH--HHHHh-----cc-CCceEEEECcchhHHHHHhhccC
Confidence 34679999999999999999986 344556666665543 33222 11 23677777755543 1111234
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHh-ccCCCCcEEEEEeccccccCCCHHHHHHHHHhc--CCcEE
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLAS-KLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL--GLEYI 319 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r-~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a--Gf~~v 319 (343)
+||+|++... |. + ...+|.++.+ +||| ||++++.+.......+..+.+.+.+++. +|+..
T Consensus 152 ~fD~I~~d~~--~~-~--~~~~l~~~~r~~Lkp-GG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 152 AHPLIFIDNA--HA-N--TFNIMKWAVDHLLEE-GDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp CSSEEEEESS--CS-S--HHHHHHHHHHHTCCT-TCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCCEEEECCc--hH-h--HHHHHHHHHHhhCCC-CCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 7999998654 32 2 3348999997 9999 9999986421111222356788888887 57654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=104.66 Aligned_cols=145 Identities=18% Similarity=0.105 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEec
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRG 241 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~ 241 (343)
.....+...+.......++.+|||+|||+|.++..++... +...++++|+++.....+ +++.. .+.. ++.+..+
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a--~~n~~~~g~~--~i~~~~~ 261 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLA--REAALASGLS--WIRFLRA 261 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHH--HHHHHHTTCT--TCEEEEC
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHH--HHHHHHcCCC--ceEEEeC
Confidence 3556677777777888889999999999999999999876 556777777777666555 33333 3442 5677776
Q ss_pred ccCCcCCCCCCCceeEEEEccccccCCc--h----HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 242 EDMDFTKFGSGVVYDLIYASAVFLHMPD--K----LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 242 ~~~dl~~~~~~~~fDlIvs~~v~~hl~~--~----~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
+..+++. ..+.||+|+++..+..... . ....+++++.++||| ||.+++... ..+.+.+.++ .|
T Consensus 262 D~~~~~~--~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp-gG~l~i~t~-------~~~~~~~~~~-~g 330 (354)
T 3tma_A 262 DARHLPR--FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP-GGRVALLTL-------RPALLKRALP-PG 330 (354)
T ss_dssp CGGGGGG--TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT-TCEEEEEES-------CHHHHHHHCC-TT
T ss_pred ChhhCcc--ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC-CcEEEEEeC-------CHHHHHHHhh-cC
Confidence 5555442 2356899999866643221 1 124589999999999 999988753 2344555555 89
Q ss_pred CcEEEeee
Q 019282 316 LEYIGKKT 323 (343)
Q Consensus 316 f~~v~~~~ 323 (343)
|+......
T Consensus 331 ~~~~~~~~ 338 (354)
T 3tma_A 331 FALRHARV 338 (354)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 98776543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=102.34 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
++.+|||+|||+|.++..++.... . .++++|.++.+.+.++++.. .+. .++.++.++..++... ..++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~--~V~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~D~~~~~~~-~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-A--GATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQ-KGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-S--EEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSS-CCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-C--EEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHhh-cCCCCCEEE
Confidence 578999999999999998776421 2 45666666666666555433 333 3566776644443222 356899999
Q ss_pred EccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 260 ASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
+...++ .... ..+++.+.+ +|+| ||++++...
T Consensus 128 ~~~p~~-~~~~--~~~l~~l~~~~~L~p-gG~l~i~~~ 161 (202)
T 2fpo_A 128 VDPPFR-RGLL--EETINLLEDNGWLAD-EALIYVESE 161 (202)
T ss_dssp ECCSSS-TTTH--HHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred ECCCCC-CCcH--HHHHHHHHhcCccCC-CcEEEEEEC
Confidence 987764 3333 337788865 5999 999998754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=109.52 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+.+...+.++.+|||||||+|.++..+++. +...++++|++ . +...++++.. .+. .+++.++.++..++. +
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~--~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~-~ 101 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-S--IIEMAKELVELNGF-SDKITLLRGKLEDVH-L 101 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-T--HHHHHHHHHHHTTC-TTTEEEEESCTTTSC-C
T ss_pred HHHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-H--HHHHHHHHHHHcCC-CCCEEEEECchhhcc-C
Confidence 33433345567889999999999999998874 33456666666 2 3444444333 333 336777776444443 2
Q ss_pred CCCCceeEEEEccccccCC-chHHHHHHHHHHhccCCCCcEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMP-DKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~-~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
++++||+|++..+.+++. ......++.++.++||| ||.++.
T Consensus 102 -~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~li~ 143 (328)
T 1g6q_1 102 -PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVE-GGLIFP 143 (328)
T ss_dssp -SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred -CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCC-CeEEEE
Confidence 247899999986654442 22334589999999999 999974
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=106.90 Aligned_cols=134 Identities=14% Similarity=0.007 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC--CCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG--SGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~--~~~~f 255 (343)
..++.+|||+|||+|.++..++.. +..++++|.++.+.+.++++.. .++.+.++.++.++..++.... ..++|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~----ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~f 226 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY 226 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred cCCCCcEEEcccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCc
Confidence 456789999999999999999883 2356666666666666665443 3332224667766444432110 14689
Q ss_pred eEEEEccccccCC--------chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH----hcCCcEE
Q 019282 256 DLIYASAVFLHMP--------DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT----SLGLEYI 319 (343)
Q Consensus 256 DlIvs~~v~~hl~--------~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~----~aGf~~v 319 (343)
|+|++........ ......+++++.++|+| ||.+++..... .....+.+.+.++ ++|+++.
T Consensus 227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp-gG~lli~~~~~--~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLVLTAYS--IRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEEEEECC--TTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc-CcEEEEEECCC--CCCCHHHHHHHHHHHHHHcCCeEE
Confidence 9999954321111 12234589999999999 99988765322 1223555555554 6788765
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.1e-10 Score=100.94 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=73.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+.+.+..... .++.+|||||||+|.++..+++.++...++++|++ +.+.+.+++.. .++.+..++..
T Consensus 70 ~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~------~~~~~~~~d~~ 140 (269)
T 1p91_A 70 LRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS--KVAIKAAAKRY------PQVTFCVASSH 140 (269)
T ss_dssp HHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESC--HHHHHHHHHHC------TTSEEEECCTT
T ss_pred HHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHhC------CCcEEEEcchh
Confidence 44555555554332 56789999999999999999987644455555555 45555444321 13455655443
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+++ + .+++||+|+++.+.. .++++.++||| ||++++..
T Consensus 141 ~~~-~-~~~~fD~v~~~~~~~---------~l~~~~~~L~p-gG~l~~~~ 178 (269)
T 1p91_A 141 RLP-F-SDTSMDAIIRIYAPC---------KAEELARVVKP-GGWVITAT 178 (269)
T ss_dssp SCS-B-CTTCEEEEEEESCCC---------CHHHHHHHEEE-EEEEEEEE
T ss_pred hCC-C-CCCceeEEEEeCChh---------hHHHHHHhcCC-CcEEEEEE
Confidence 333 2 357899999876532 57899999999 99998874
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-10 Score=101.97 Aligned_cols=139 Identities=15% Similarity=0.053 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-C-CCCCCCcEEEecc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-Q-GLLHKRPIIVRGE 242 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~-~~~~~~~~~~~~~ 242 (343)
.......+...+.+.++.+|||+|||+|.++..+++.+. ...++++|+ ++.+.+.++++.. . +....++.+..++
T Consensus 84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~--~~~~~~~a~~~~~~~~g~~~~~v~~~~~d 161 (280)
T 1i9g_A 84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ--RADHAEHARRNVSGCYGQPPDNWRLVVSD 161 (280)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS--CHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 344556677778889999999999999999999998653 344455554 4455544444332 2 2112356666553
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh-cCCcEEE
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS-LGLEYIG 320 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~-aGf~~v~ 320 (343)
..+.. + .++.||+|++ +++++.. +++++.++|+| ||++++...... ...++.+.+.+ .||..++
T Consensus 162 ~~~~~-~-~~~~~D~v~~-----~~~~~~~--~l~~~~~~L~p-gG~l~~~~~~~~----~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 162 LADSE-L-PDGSVDRAVL-----DMLAPWE--VLDAVSRLLVA-GGVLMVYVATVT----QLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp GGGCC-C-CTTCEEEEEE-----ESSCGGG--GHHHHHHHEEE-EEEEEEEESSHH----HHHHHHHHHHHHSSBCCCE
T ss_pred hHhcC-C-CCCceeEEEE-----CCcCHHH--HHHHHHHhCCC-CCEEEEEeCCHH----HHHHHHHHHHhcCCcCCcE
Confidence 33332 2 3568999998 3444443 89999999999 999998753110 13345556666 7886543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=100.49 Aligned_cols=114 Identities=20% Similarity=0.348 Sum_probs=75.3
Q ss_pred HHHHHHHhc--CCCCCCeEEEEcCCcCHHHHHHHHHcCC------CceEEEEcChhHHHHHHHHhccc-CCC---CCCCc
Q 019282 169 VFEFLAEAS--HITPNSHVLEIGCGTLRVGVHFIRYLNP------ENFHCLERDELSLMAAFRYELPS-QGL---LHKRP 236 (343)
Q Consensus 169 ~~~~l~~~~--~l~~~~rVLDIGCGtG~~a~~la~~~~~------~~~~vvdid~s~~~~a~a~~~~~-~~~---~~~~~ 236 (343)
+...+.+.+ .+.++.+|||||||+|.++..+++..+. ..++++|+++.....+ +++.. .+. ...++
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a--~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS--KANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH--HHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH--HHHHHhcCccccCCCce
Confidence 444444444 5788899999999999999999986542 3556666665544443 43322 110 01245
Q ss_pred EEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
.+..++..+ .+...++||+|++...++++. +++.++||| ||++++...
T Consensus 148 ~~~~~d~~~--~~~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkp-gG~lvi~~~ 195 (227)
T 1r18_A 148 LIVEGDGRK--GYPPNAPYNAIHVGAAAPDTP--------TELINQLAS-GGRLIVPVG 195 (227)
T ss_dssp EEEESCGGG--CCGGGCSEEEEEECSCBSSCC--------HHHHHTEEE-EEEEEEEES
T ss_pred EEEECCccc--CCCcCCCccEEEECCchHHHH--------HHHHHHhcC-CCEEEEEEe
Confidence 566553332 122236899999999998875 568999999 999999864
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=101.36 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=69.3
Q ss_pred CeEEEEcCCc--CHHHHHHHHH-cCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CC-C--CCce
Q 019282 183 SHVLEIGCGT--LRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FG-S--GVVY 255 (343)
Q Consensus 183 ~rVLDIGCGt--G~~a~~la~~-~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~-~--~~~f 255 (343)
.+|||||||+ +..+..+++. .+.. .++++|.++.|.+.++++.... ...++.++.++..+... +. + .+.|
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~a--rVv~VD~sp~mLa~Ar~~l~~~-~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPES--RVVYVDNDPIVLTLSQGLLAST-PEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTC--EEEEEECCHHHHHTTHHHHCCC-SSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCC--EEEEEeCChHHHHHHHHHhccC-CCCcEEEEEecccChhhhhccccccccc
Confidence 5899999997 4444555543 3444 4555666666666665543221 22246677664433210 00 0 1234
Q ss_pred e-----EEEEccccccCCchH-HHHHHHHHHhccCCCCcEEEEEe
Q 019282 256 D-----LIYASAVFLHMPDKL-VWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 256 D-----lIvs~~v~~hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
| .|+++.++||+++.. ...+++++++.|+| ||+|++++
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P-GG~Lvls~ 200 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS-GSYLAMSI 200 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT-TCEEEEEE
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC-CcEEEEEe
Confidence 4 588999999999865 35599999999999 99999985
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-10 Score=103.15 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
.+++.+.+.+...++.+|||+|||+|.++..++.. +...++++|+++.....+ +++.. .+. .+++.++.++..+.
T Consensus 110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A--~~n~~~~~l-~~~v~~~~~D~~~~ 185 (284)
T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIA--RKNAERHGV-SDRFFVRKGEFLEP 185 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHH--HHHHHHTTC-TTSEEEEESSTTGG
T ss_pred HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHH--HHHHHHcCC-CCceEEEECcchhh
Confidence 34455544433346679999999999999999987 656666666666555444 44333 333 33577777644332
Q ss_pred CCCCCCCce---eEEEEccccc-----------cCCchHH------HHHHHHHH-hccCCCCcEEEEEeccccccCCCHH
Q 019282 247 TKFGSGVVY---DLIYASAVFL-----------HMPDKLV------WVGLERLA-SKLRPYDGRIFVSHNIKFCSRLGGE 305 (343)
Q Consensus 247 ~~~~~~~~f---DlIvs~~v~~-----------hl~~~~~------~~~L~~l~-r~LkP~GG~lvi~~~~~~~~~~~~~ 305 (343)
..++| |+|+++.-+. |-+.... ..+++++. +.|+| ||.+++.++.. ..+
T Consensus 186 ----~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~p-gG~l~~e~~~~-----q~~ 255 (284)
T 1nv8_A 186 ----FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTS-GKIVLMEIGED-----QVE 255 (284)
T ss_dssp ----GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCT-TCEEEEECCTT-----CHH
T ss_pred ----cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCC-CCEEEEEECch-----HHH
Confidence 12578 9999973221 2222111 14799999 99999 99999876422 244
Q ss_pred HHHHHHHhc
Q 019282 306 ECTKRLTSL 314 (343)
Q Consensus 306 ~l~~~L~~a 314 (343)
++.+.+++.
T Consensus 256 ~v~~~~~~~ 264 (284)
T 1nv8_A 256 ELKKIVSDT 264 (284)
T ss_dssp HHTTTSTTC
T ss_pred HHHHHHHhC
Confidence 555555544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=105.16 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC----C
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG----S 251 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~----~ 251 (343)
..++.+|||||||+|..+..+++.++ ...++++|+++.....+ ++... .+. ..++.++.++..++. .+. .
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a--~~~~~~~g~-~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG--LPVIKKAGV-DHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHH--HHHHHHTTC-GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHH--HHHHHHcCC-CCCeEEEECCHHHHHHHHHhccCC
Confidence 34567999999999999999999876 45566666666554444 44332 333 335667766544432 110 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++||+|++.... . ....+++++.++||| ||++++.
T Consensus 154 ~~~fD~V~~d~~~---~--~~~~~l~~~~~~Lkp-GG~lv~d 189 (247)
T 1sui_A 154 HGSYDFIFVDADK---D--NYLNYHKRLIDLVKV-GGVIGYD 189 (247)
T ss_dssp TTCBSEEEECSCS---T--THHHHHHHHHHHBCT-TCCEEEE
T ss_pred CCCEEEEEEcCch---H--HHHHHHHHHHHhCCC-CeEEEEe
Confidence 4689999987542 2 234589999999999 9999876
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-10 Score=98.25 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=73.7
Q ss_pred HHHHHHhcC--CCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCC---CCCCcEEEecc
Q 019282 170 FEFLAEASH--ITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGL---LHKRPIIVRGE 242 (343)
Q Consensus 170 ~~~l~~~~~--l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~---~~~~~~~~~~~ 242 (343)
...+.+.+. +.++.+|||||||+|..+..+++..+. ..++++|+++.....+ +++.. .+. ...++.+..++
T Consensus 64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a--~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS--VNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH--HHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHH--HHHHHhhcccccCCCcEEEEECC
Confidence 334444443 778899999999999999999987632 4566666665544443 33222 111 01245566553
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
..+. ....++||+|++...++++. +++.++||| ||++++...
T Consensus 142 ~~~~--~~~~~~fD~i~~~~~~~~~~--------~~~~~~Lkp-gG~lv~~~~ 183 (226)
T 1i1n_A 142 GRMG--YAEEAPYDAIHVGAAAPVVP--------QALIDQLKP-GGRLILPVG 183 (226)
T ss_dssp GGGC--CGGGCCEEEEEECSBBSSCC--------HHHHHTEEE-EEEEEEEES
T ss_pred cccC--cccCCCcCEEEECCchHHHH--------HHHHHhcCC-CcEEEEEEe
Confidence 3221 11356899999998887654 568899999 999999753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=97.87 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---------CCCCCCcEEEecccCC-cC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---------GLLHKRPIIVRGEDMD-FT 247 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---------~~~~~~~~~~~~~~~d-l~ 247 (343)
.++++.+|||||||+|.++..+++..+...++++|++......+ +++... +. .++.++.++..+ ++
T Consensus 46 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a--~~~~~~~~~~~~~~~~~--~nv~~~~~D~~~~l~ 121 (246)
T 2vdv_E 46 QMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV--EDRIIALRNNTASKHGF--QNINVLRGNAMKFLP 121 (246)
T ss_dssp CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHH--HHHHHHHHHTC-CCSTT--TTEEEEECCTTSCGG
T ss_pred cCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHH--HHHHHHHhhccccccCC--CcEEEEeccHHHHHH
Confidence 45677899999999999999999977655666666666554443 332211 22 256777776655 33
Q ss_pred CCCCCCceeEEEEccccccCCchHH-----------HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCC
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLV-----------WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGL 316 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~-----------~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf 316 (343)
.....+.+|.|+... +++.. ..+++++.++|+| ||.+++....... .+.+.+.+...|.
T Consensus 122 ~~~~~~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp-gG~l~~~td~~~~----~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 122 NFFEKGQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKE-GGVVYTITDVKDL----HEWMVKHLEEHPL 191 (246)
T ss_dssp GTSCTTCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEE-EEEEEEEESCHHH----HHHHHHHHHHSTT
T ss_pred HhccccccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCC-CCEEEEEeccHHH----HHHHHHHHHhCcC
Confidence 222467899998542 33210 2489999999999 9999986432211 2344555666663
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=105.12 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+.+.+|||||||+|.++..+++..+...++++|+|+.....+ ++... .+..+.++.++.++..++... .+++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~a--r~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYS--KKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHH--HHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHH--HHHhHhhccccCCCceEEEECcHHHHHhh-CCCCee
Confidence 346799999999999999998865556777888777655554 33221 133344677777654443211 257899
Q ss_pred EEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|++....++.+.. ....++++++++|+| ||++++.....+........+.+.+++. |..+.
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~p-gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 214 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKE-DGIFVAQTDNPWFTPELITNVQRDVKEI-FPITK 214 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeE
Confidence 99996554322211 013489999999999 9999887532222111134555667666 66554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=102.16 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++.+|||||||+|..+..+++.++ ...++++|+++ .+.+.++++.. .+. .+++.++.++..++... .++ ||+
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~-~~~-fD~ 129 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDR--DNVEHARRMLHDNGL-IDRVELQVGDPLGIAAG-QRD-IDI 129 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHSG-GGGEEEEESCHHHHHTT-CCS-EEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCC-CceEEEEEecHHHHhcc-CCC-CCE
Confidence 3567999999999999999998765 44555555555 44444444322 233 22566776654443212 245 999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|++.... .+ ...+++++.++||| ||++++.
T Consensus 130 v~~~~~~---~~--~~~~l~~~~~~Lkp-gG~lv~~ 159 (210)
T 3c3p_A 130 LFMDCDV---FN--GADVLERMNRCLAK-NALLIAV 159 (210)
T ss_dssp EEEETTT---SC--HHHHHHHHGGGEEE-EEEEEEE
T ss_pred EEEcCCh---hh--hHHHHHHHHHhcCC-CeEEEEE
Confidence 9987432 22 33489999999999 9999875
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=104.70 Aligned_cols=134 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC--CC-------CCCCcEEEecccCCcCCCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ--GL-------LHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~--~~-------~~~~~~~~~~~~~dl~~~~ 250 (343)
+++.+|||||||+|.++..+++. +...++++|+|+.....+. +.... ++ ...++.++.++..++...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar--~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSK--DLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHH--HHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHH--HHHhhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 45679999999999999999886 6567778877776655553 32211 22 234566666644332211
Q ss_pred CCCceeEEEEccccccCCchH--HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKL--VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~--~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+++||+|++....+.-+... ...++++++++|+| ||++++.....+........+.+.+++. |..+.
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~ 218 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN-PGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVY 218 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEE-EEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 46899999865542222111 24589999999999 9999887432221110133444455544 55544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-09 Score=105.84 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=95.6
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPI 237 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~ 237 (343)
.+.+..+......+...+.+.++.+|||+|||+|..+..++...+. ..++++|++ ..+...++++.. .+. .++.
T Consensus 238 ~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s--~~~l~~~~~~~~~~g~--~~v~ 313 (450)
T 2yxl_A 238 EGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVD--KMRMKRLKDFVKRMGI--KIVK 313 (450)
T ss_dssp TTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSC--HHHHHHHHHHHHHTTC--CSEE
T ss_pred CceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHHcCC--CcEE
Confidence 4444344444444444567888999999999999999999987754 444555544 454444444332 333 2456
Q ss_pred EEecccCCcCCCCCCCceeEEEE------ccccccCCchHH--------------HHHHHHHHhccCCCCcEEEEEeccc
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYA------SAVFLHMPDKLV--------------WVGLERLASKLRPYDGRIFVSHNIK 297 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs------~~v~~hl~~~~~--------------~~~L~~l~r~LkP~GG~lvi~~~~~ 297 (343)
++.++..++.....++.||+|++ ..++++.++..+ ..+|+++.++||| ||+++++.-.-
T Consensus 314 ~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvy~tcs~ 392 (450)
T 2yxl_A 314 PLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP-GGRLLYTTCSI 392 (450)
T ss_dssp EECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE-EEEEEEEESCC
T ss_pred EEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCC
Confidence 66554444332112368999996 344544444211 4589999999999 99998764211
Q ss_pred cccCCCHHHHHHHHHhc-CCcEEEe
Q 019282 298 FCSRLGGEECTKRLTSL-GLEYIGK 321 (343)
Q Consensus 298 ~~~~~~~~~l~~~L~~a-Gf~~v~~ 321 (343)
...-..+.+...+++. ||+.+..
T Consensus 393 -~~~ene~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 393 -FKEENEKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp -CGGGTHHHHHHHHHHCSSCEECCC
T ss_pred -ChhhHHHHHHHHHHhCCCCEEeec
Confidence 1111256677778776 7876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-10 Score=99.32 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-----CCceEEEEcChhHHHHHHHHhccc-CCC---CCCCcEEEecccCCcCC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-----PENFHCLERDELSLMAAFRYELPS-QGL---LHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-----~~~~~vvdid~s~~~~a~a~~~~~-~~~---~~~~~~~~~~~~~dl~~ 248 (343)
.+.++.+|||||||+|.++..+++... ...++++|+++... +.+++... .+. ...++.++.++..+...
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~--~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 154 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLV--NFSLENIKRDKPELLKIDNFKIIHKNIYQVNE 154 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHH--HHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHH--HHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence 578889999999999999999998763 23555666555444 44443322 221 02256666653332110
Q ss_pred --CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 249 --FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 249 --~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
....++||+|++...++++. +++.++||| ||++++...
T Consensus 155 ~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkp-gG~lv~~~~ 194 (227)
T 2pbf_A 155 EEKKELGLFDAIHVGASASELP--------EILVDLLAE-NGKLIIPIE 194 (227)
T ss_dssp HHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEE-EEEEEEEEE
T ss_pred ccCccCCCcCEEEECCchHHHH--------HHHHHhcCC-CcEEEEEEc
Confidence 01246899999999988753 668899999 999998754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.7e-11 Score=108.05 Aligned_cols=107 Identities=17% Similarity=0.065 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC----C
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG----S 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~----~ 251 (343)
...++.+|||||||+|..+..+++.++ ...++++|+++.....+ +++.. .+. ..++.++.++..++.... .
T Consensus 57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a--~~~~~~~g~-~~~i~~~~gda~~~l~~~~~~~~ 133 (242)
T 3r3h_A 57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA--HPYWREAKQ-EHKIKLRLGPALDTLHSLLNEGG 133 (242)
T ss_dssp HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCS--HHHHHHTTC-TTTEEEEESCHHHHHHHHHHHHC
T ss_pred hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHH--HHHHHHcCC-CCcEEEEEcCHHHHHHHHhhccC
Confidence 344567999999999999999999775 45666777666544333 33222 333 236777776544432110 0
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++||+|++... ......+++++.++||| ||++++.
T Consensus 134 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~Lkp-GG~lv~d 169 (242)
T 3r3h_A 134 EHQFDFIFIDAD-----KTNYLNYYELALKLVTP-KGLIAID 169 (242)
T ss_dssp SSCEEEEEEESC-----GGGHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCEeEEEEcCC-----hHHhHHHHHHHHHhcCC-CeEEEEE
Confidence 478999998654 22334589999999999 9999886
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-10 Score=109.79 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.++++|||||||||.++..++++ +...+++++.++ +...++++.+.+....++.++.++..++. .+++||+
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~~i~~~~~~~~---lpe~~Dv 152 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA---IWQQAREVVRFNGLEDRVHVLPGPVETVE---LPEQVDA 152 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST---THHHHHHHHHHTTCTTTEEEEESCTTTCC---CSSCEEE
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH---HHHHHHHHHHHcCCCceEEEEeeeeeeec---CCccccE
Confidence 3446889999999999999877763 334556666553 34445554443334457888877544443 4578999
Q ss_pred EEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 258 IYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 258 Ivs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|++-.+-..+ .......++....+.||| ||.++-.
T Consensus 153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lkp-~G~~iP~ 188 (376)
T 4hc4_A 153 IVSEWMGYGLLHESMLSSVLHARTKWLKE-GGLLLPA 188 (376)
T ss_dssp EECCCCBTTBTTTCSHHHHHHHHHHHEEE-EEEEESC
T ss_pred EEeecccccccccchhhhHHHHHHhhCCC-CceECCc
Confidence 9985443333 222455688899999999 9998643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=104.93 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-CC
Q 019282 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-TK 248 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~~ 248 (343)
.+.....+.++.+|||||||+|..+..+++.++ ...++++|+++... +.+++... .+. .+++.+..++..+. +.
T Consensus 51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~--~~a~~~~~~~g~-~~~v~~~~~d~~~~~~~ 127 (239)
T 2hnk_A 51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT--NVARKYWKENGL-ENKIFLKLGSALETLQV 127 (239)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHH--HHHHHHHHHTTC-GGGEEEEESCHHHHHHH
T ss_pred HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHH--HHHHHHHHHcCC-CCCEEEEECCHHHHHHH
Confidence 333333455678999999999999999999875 35566666665444 44444322 233 22456666533221 10
Q ss_pred -------------CCCC-CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 249 -------------FGSG-VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 249 -------------~~~~-~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+..+ ++||+|++.....+ ...+++++.++|+| ||++++..
T Consensus 128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-----~~~~l~~~~~~L~p-gG~lv~~~ 181 (239)
T 2hnk_A 128 LIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-----YPNYYPLILKLLKP-GGLLIADN 181 (239)
T ss_dssp HHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG-----HHHHHHHHHHHEEE-EEEEEEEC
T ss_pred HHhhcccccccccccCCCCCcCEEEEeCCHHH-----HHHHHHHHHHHcCC-CeEEEEEc
Confidence 1102 68999998754432 33489999999999 99999863
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=100.54 Aligned_cols=146 Identities=8% Similarity=0.026 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+|..+.... .+..+|||||||+|-++..++...+...++++|+|...+... +++.. .+. ...+.. .|
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a--~~~l~~~g~---~~~~~v---~D 189 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFV--DEALTRLNV---PHRTNV---AD 189 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHH--HHHHHHTTC---CEEEEE---CC
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH--HHHHHhcCC---CceEEE---ee
Confidence 44556565443 556799999999999999998866778888888888666555 43333 233 222222 35
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccC--CC-----HHHHHHHHHhcCCcE
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSR--LG-----GEECTKRLTSLGLEY 318 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~--~~-----~~~l~~~L~~aGf~~ 318 (343)
+..-.+.++||+|++.-+++|+.+......+ ++.+.|+| +|.+ ++++...... .+ .+.|.+.+.+.|..+
T Consensus 190 ~~~~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~-~~vv-VSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 190 LLEDRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNS-PNIV-VTFPTKSLGQRSKGMFQNYSQSFESQARERSCRI 266 (281)
T ss_dssp TTTSCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSC-SEEE-EEEECC-------CHHHHHHHHHHHHHHHHTCCE
T ss_pred ecccCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCC-CCEE-EeccchhhcCCCcchhhHHHHHHHHHHHhcCCce
Confidence 5544467899999999999999777665567 99999999 6655 4443222111 11 667777888899966
Q ss_pred EEeeecc
Q 019282 319 IGKKTHD 325 (343)
Q Consensus 319 v~~~~~~ 325 (343)
.+....+
T Consensus 267 ~~~~~~n 273 (281)
T 3lcv_B 267 QRLEIGN 273 (281)
T ss_dssp EEEEETT
T ss_pred eeeeecC
Confidence 5555433
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=94.30 Aligned_cols=132 Identities=12% Similarity=0.006 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+.+.+.....++++.+|||+|||+|.++..+++. ...++++|+++. . ...++.++.++..+...
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~--------~------~~~~v~~~~~D~~~~~~ 76 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM--------E------EIAGVRFIRCDIFKETI 76 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC--------C------CCTTCEEEECCTTSSSH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc--------c------cCCCeEEEEccccCHHH
Confidence 3343433334678899999999999999999885 334445554431 0 11256666663332210
Q ss_pred CC-----CC----CceeEEEEccccccCCch---------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 249 FG-----SG----VVYDLIYASAVFLHMPDK---------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 249 ~~-----~~----~~fDlIvs~~v~~hl~~~---------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
.. .. ++||+|++.......+.. .....++.+.++||| ||.|++.... .....++...
T Consensus 77 ~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp-GG~lv~k~~~----~~~~~~~~~~ 151 (191)
T 3dou_A 77 FDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN-GGNVLLKQFQ----GDMTNDFIAI 151 (191)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEEC----STHHHHHHHH
T ss_pred HHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEEEcC----CCCHHHHHHH
Confidence 00 01 489999997654322211 123578889999999 9999886421 1113456666
Q ss_pred HHhcCCcEEEee
Q 019282 311 LTSLGLEYIGKK 322 (343)
Q Consensus 311 L~~aGf~~v~~~ 322 (343)
++ ..|+.+...
T Consensus 152 l~-~~F~~v~~~ 162 (191)
T 3dou_A 152 WR-KNFSSYKIS 162 (191)
T ss_dssp HG-GGEEEEEEE
T ss_pred HH-HhcCEEEEE
Confidence 64 457766644
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.3e-10 Score=103.08 Aligned_cols=137 Identities=17% Similarity=0.141 Sum_probs=84.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCCCCCCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
.+++.+|||||||+|..+..+++..+...++++|+|+.....+ ++.... +....++.++.++..++... .+++|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a--~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~f 152 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVS--KIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNTY 152 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH--HHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSCE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHH--HHHhHHhccccCCCcEEEEECChHHHHHh-CCCCc
Confidence 3456899999999999999998865556777777777655554 332211 11234666666644333211 25689
Q ss_pred eEEEEccccccCCchHH--HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 256 DLIYASAVFLHMPDKLV--WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~--~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
|+|++....++.+.... ..+++.++++|+| ||++++.....+........+.+.+++. |..+.
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 217 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVE 217 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEECCCcccCHHHHHHHHHHHHHH-CCceE
Confidence 99999654433232221 4589999999999 9999987432222111133444555554 66554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-09 Score=97.48 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=81.6
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..+.++.+|||+|||+|.++..+++..+...++++|+++..... ++++.+ .++ . ++.++.++..++ .. .+.|
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~--a~~n~~~n~l-~-~~~~~~~d~~~~-~~--~~~~ 187 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHY--LCENIKLNKL-N-NVIPILADNRDV-EL--KDVA 187 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHH--HHHHHHHTTC-S-SEEEEESCGGGC-CC--TTCE
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHH--HHHHHHHcCC-C-CEEEEECChHHc-Cc--cCCc
Confidence 45788899999999999999999987654555666665544444 444333 233 2 456777655554 22 5689
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHh-cCCc
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTS-LGLE 317 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~-aGf~ 317 (343)
|+|++.... .. ..++.++.+.|+| ||.++++.......... ..+..+.+.+ .|++
T Consensus 188 D~Vi~d~p~----~~--~~~l~~~~~~Lkp-gG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (272)
T 3a27_A 188 DRVIMGYVH----KT--HKFLDKTFEFLKD-RGVIHYHETVAEKIMYERPIERLKFYAEKNGYK 244 (272)
T ss_dssp EEEEECCCS----SG--GGGHHHHHHHEEE-EEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEE
T ss_pred eEEEECCcc----cH--HHHHHHHHHHcCC-CCEEEEEEcCccccccccHHHHHHHHHHHhCCe
Confidence 999997654 22 2378999999999 99998875322222112 3344445544 4544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=103.06 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=96.0
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
..+.+...+.... ..++.+|||+|||+|.++..++.......++++|+++.+...+ +++.. .++ ..++.+..++.
T Consensus 202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A--~~n~~~~gl-~~~i~~~~~D~ 277 (373)
T 3tm4_A 202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGA--EMNALAAGV-LDKIKFIQGDA 277 (373)
T ss_dssp CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHH--HHHHHHTTC-GGGCEEEECCG
T ss_pred ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHH--HHHHHHcCC-CCceEEEECCh
Confidence 4566666666666 7788999999999999999999865434667777766555555 44333 333 23567777755
Q ss_pred CCcCCCCCCCceeEEEEccccccCCc------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCc
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPD------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLE 317 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~ 317 (343)
.+++ . .+++||+|+++..+..-.. .....+++.++++| + |+.++++. ..+.+.+.+.+.||+
T Consensus 278 ~~~~-~-~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~-g~~~~i~~--------~~~~~~~~~~~~G~~ 345 (373)
T 3tm4_A 278 TQLS-Q-YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-E-KRGVFITT--------EKKAIEEAIAENGFE 345 (373)
T ss_dssp GGGG-G-TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-E-EEEEEEES--------CHHHHHHHHHHTTEE
T ss_pred hhCC-c-ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-C-CeEEEEEC--------CHHHHHHHHHHcCCE
Confidence 5544 2 3478999999866543211 11245789999989 6 66666654 367788889999999
Q ss_pred EEEee
Q 019282 318 YIGKK 322 (343)
Q Consensus 318 ~v~~~ 322 (343)
.....
T Consensus 346 ~~~~~ 350 (373)
T 3tm4_A 346 IIHHR 350 (373)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=105.15 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.. +...++++|+++.....+ .++.++.+ |
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~~---D 89 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILA---D 89 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEES---C
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEeC---C
Confidence 3456666666665567799999999999999999876 446677888777432111 24555555 4
Q ss_pred cCCCCCCCceeEEEEcccccc----------CCchHH-----------------HHHHHHHHhccCCCCcEEEEEecccc
Q 019282 246 FTKFGSGVVYDLIYASAVFLH----------MPDKLV-----------------WVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~h----------l~~~~~-----------------~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
+.++...+.||+|+++-.+.. +.+... ..+++.+.++|+| ||++++..+..+
T Consensus 90 ~~~~~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~-~G~~~~i~p~~~ 168 (421)
T 2ih2_A 90 FLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP-GGVLVFVVPATW 168 (421)
T ss_dssp GGGCCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE-EEEEEEEEEGGG
T ss_pred hhhcCccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC-CCEEEEEEChHH
Confidence 433434578999999744422 222211 1468999999999 999988765554
Q ss_pred ccCCCHHHHHHHHHhcCC
Q 019282 299 CSRLGGEECTKRLTSLGL 316 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~aGf 316 (343)
...-..+.+++.+.+.|+
T Consensus 169 l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 169 LVLEDFALLREFLAREGK 186 (421)
T ss_dssp GTCGGGHHHHHHHHHHSE
T ss_pred hcCccHHHHHHHHHhcCC
Confidence 433335678888888887
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=106.18 Aligned_cols=113 Identities=22% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCc-CCCCCCCc
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDF-TKFGSGVV 254 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl-~~~~~~~~ 254 (343)
.+++.+|||||||+|..+..+++..+...++++|+|+.....+ ++... .++...++.++.++..++ ... .+++
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~A--r~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-~~~~ 194 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS--KQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-AEGS 194 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH--HHHCHHHHGGGGSTTEEEEESCHHHHHHTS-CTTC
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHH--HHHHHhhccccCCCcEEEEECCHHHHHHhc-cCCC
Confidence 4566899999999999999999865556677777776555544 43321 123234677777654443 212 2468
Q ss_pred eeEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEec
Q 019282 255 YDLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
||+|++...-.+-+.. ....+++.++++|+| ||++++...
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 236 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQAE 236 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEECC
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCC-CcEEEEecC
Confidence 9999996542111111 124589999999999 999998743
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=98.66 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-CCCCCCcEEE--ecccC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-GLLHKRPIIV--RGEDM 244 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-~~~~~~~~~~--~~~~~ 244 (343)
..+..+.+...++++.+|||||||+|.++..+++. ..++++|+++ +...+++.... .....++.++ .+
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~--- 131 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRV--- 131 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSC---
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEeccc---
Confidence 34455555566778899999999999999998875 4556666655 21111111000 0001145555 44
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHH-----HHHHHHHHhccCCCCc--EEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLV-----WVGLERLASKLRPYDG--RIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~-----~~~L~~l~r~LkP~GG--~lvi~~ 294 (343)
|+.+++ +++||+|+|..+ ++.+.... ..+|+.+.++||| || .+++..
T Consensus 132 D~~~l~-~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp-GG~~~fv~kv 185 (265)
T 2oxt_A 132 DIHTLP-VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVK-NPSADFVVKV 185 (265)
T ss_dssp CTTTSC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred CHhHCC-CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhcc-CCCeEEEEEe
Confidence 444443 578999999877 55444321 1278999999999 99 888854
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-10 Score=104.54 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+++.+|||||||+|.++..+++..+...++++|+|+.....+ ++.... +....++.++.++..++... .+++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~a--r~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVS--KIYFKNISCGYEDKRVNVFIEDASKFLEN-VTNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHH--HHHCTTTSGGGGSTTEEEEESCHHHHHHH-CCSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHH--HHHHHhhccccCCCcEEEEEccHHHHHhh-cCCCce
Confidence 456799999999999999998865556677777777655554 333221 12134666776643332211 246899
Q ss_pred EEEEccccccCCchHH--HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDKLV--WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~--~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|++...-..-+.... ..++++++++|+| ||++++.....+........+.+.+++. |..+.
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 255 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVE 255 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEE-EEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeE
Confidence 9998653211111111 4589999999999 9999987533322111134445555555 55544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-10 Score=100.37 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCCCC--
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFGSG-- 252 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~~~-- 252 (343)
...++.+|||||||+|..+..+++.++ ...++++|+++.....+ ++... .+. ..++.++.++..+.. .+...
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a--~~~~~~~g~-~~~i~~~~~d~~~~~~~~~~~~~ 142 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG--RPLWRQAEA-EHKIDLRLKPALETLDELLAAGE 142 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH--HHHHHHTTC-TTTEEEEESCHHHHHHHHHHTTC
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH--HHHHHHCCC-CCeEEEEEcCHHHHHHHHHhcCC
Confidence 445678999999999999999998765 45666666666554444 43322 333 235667766433321 11111
Q ss_pred -CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 -VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 -~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++||+|++... ......+++++.++|+| ||.+++.
T Consensus 143 ~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~p-gG~lv~~ 178 (229)
T 2avd_A 143 AGTFDVAVVDAD-----KENCSAYYERCLQLLRP-GGILAVL 178 (229)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCccEEEECCC-----HHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 68999999654 22234489999999999 9999886
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.5e-10 Score=105.63 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+++.+|||||||+|..+..+++..+...++++|+|+... +.+++.... +....++.++.++..++... .+++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i--~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI--DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH--HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHH--HHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cCCCce
Confidence 345799999999999999998865555666666666544 444443221 22234666776644332211 356899
Q ss_pred EEEEccccccCCc-hHH--HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPD-KLV--WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~-~~~--~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|++...- ++.. ... ..+++.++++|+| ||++++.....+........+.+.+++. |..+.
T Consensus 184 ~Ii~d~~~-~~~~~~~l~t~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~ 247 (314)
T 2b2c_A 184 VIITDSSD-PVGPAESLFGQSYYELLRDALKE-DGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVT 247 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEE
T ss_pred EEEEcCCC-CCCcchhhhHHHHHHHHHhhcCC-CeEEEEECCCcccCHHHHHHHHHHHHHH-CCcce
Confidence 99986543 3322 211 4689999999999 9999987533322111133444555544 55443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=101.92 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=73.0
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
.+|||||||+|.++..+++.++...++++++|+.....+ ++.... ....++.++.++..++..-..+++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~A--r~~~~~-~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLS--REWFDI-PRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHH--HHHSCC-CCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHH--HHhccc-cCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 499999999999999999977767777777777555444 443321 12346677776544442111357899999864
Q ss_pred ccccCCchH--HHHHHHHHHhccCCCCcEEEEEe
Q 019282 263 VFLHMPDKL--VWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 263 v~~hl~~~~--~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
..+...... ...+++.++++|+| ||++++..
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~Lkp-gGvlv~~~ 200 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAP-GGLYVANC 200 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCC-CcEEEEEe
Confidence 433221111 13589999999999 99998875
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-10 Score=104.06 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEE--ecccCC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIV--RGEDMD 245 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~--~~~~~d 245 (343)
.+..+.+...++++.+|||||||+|.++..+++. ..++++|+++ +...+++... ......++.++ .+ |
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~---D 140 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT---LGTSGHEKPRLVETFGWNLITFKSKV---D 140 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEEECSC---C
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch---hhhhhhhchhhhhhcCCCeEEEeccC---c
Confidence 4455555556778899999999999999999885 4556666655 2221111110 00011145556 44 4
Q ss_pred cCCCCCCCceeEEEEccccccCCchHH-----HHHHHHHHhccCCCCc--EEEEEe
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLV-----WVGLERLASKLRPYDG--RIFVSH 294 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~-----~~~L~~l~r~LkP~GG--~lvi~~ 294 (343)
+.+++ +++||+|+|..+ ++.+.+.. ..+|+.+.++||| || .+++..
T Consensus 141 ~~~l~-~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp-GG~~~~v~~~ 193 (276)
T 2wa2_A 141 VTKME-PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEY-NQGCGFCVKV 193 (276)
T ss_dssp GGGCC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH-STTCEEEEEE
T ss_pred HhhCC-CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhcc-CCCcEEEEEe
Confidence 44343 578999999877 45443221 1378999999999 99 888753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-10 Score=101.14 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC----C
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG----S 251 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~----~ 251 (343)
..++.+|||||||+|..+..+++.++ ...++++|+++.. .+.++++.. .+. .+++.++.++..++. .+. .
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~--~~~a~~~~~~~g~-~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREA--YEIGLPFIRKAGV-EHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHH--HHHHHHHHHHTTC-GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHH--HHHHHHHHHHcCC-CCcEEEEEcCHHHHHHHHHhccCC
Confidence 34567999999999999999999876 4555566655544 444444333 344 335667766544431 110 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++||+|++.... .....+++.+.++|+| ||++++.
T Consensus 145 ~~~fD~I~~d~~~-----~~~~~~l~~~~~~L~p-GG~lv~d 180 (237)
T 3c3y_A 145 EGSYDFGFVDADK-----PNYIKYHERLMKLVKV-GGIVAYD 180 (237)
T ss_dssp TTCEEEEEECSCG-----GGHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCcCEEEECCch-----HHHHHHHHHHHHhcCC-CeEEEEe
Confidence 4689999986432 2334589999999999 9999876
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=102.86 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CC-CCCCCcEEEecccCCcCCCCCCCce
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QG-LLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~-~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+++.+|||||||+|.++..+++..+...++++|+|+.....+ ++... .+ ....++.++.++..++... .+++|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a--r~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~f 152 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA--KRHMPEWHQGAFDDPRAVLVIDDARAYLER-TEERY 152 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH--HHHCHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHH--HHHhHhhccccccCCceEEEEchHHHHHHh-cCCCc
Confidence 456799999999999999998865556677777777555544 33221 12 2234667776644443211 25689
Q ss_pred eEEEEcccccc---CCchH--HHHHHHHHHhccCCCCcEEEEEecccc-ccCCCHHHHHHHHHhcCCcEEE
Q 019282 256 DLIYASAVFLH---MPDKL--VWVGLERLASKLRPYDGRIFVSHNIKF-CSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 256 DlIvs~~v~~h---l~~~~--~~~~L~~l~r~LkP~GG~lvi~~~~~~-~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
|+|++....++ -+... ...++++++++||| ||++++.....+ ...-....+.+.+++. |..+.
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 221 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVR 221 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCC-CcEEEEEccCccccCHHHHHHHHHHHHHH-CCceE
Confidence 99999766544 11111 24589999999999 999998743322 1111144555666665 55443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.2e-09 Score=89.75 Aligned_cols=130 Identities=8% Similarity=-0.002 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..++..+... ...++.+|||+|||+|.++..+++. +...++++|+++ .+.+.++++.. ++.++.++..+
T Consensus 38 ~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~--~~~~~a~~~~~------~~~~~~~d~~~- 106 (200)
T 1ne2_A 38 AYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDP--DAIETAKRNCG------GVNFMVADVSE- 106 (200)
T ss_dssp HHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCH--HHHHHHHHHCT------TSEEEECCGGG-
T ss_pred HHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHhcC------CCEEEECcHHH-
Confidence 4455444432 4567789999999999999999875 323355555555 44444444221 45666653333
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
++ ++||+|+++..++|........+++++.+.+ |+ +++..+. ...+.+.+.+.+.| +....
T Consensus 107 --~~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~-~~~~~~~-----~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 107 --IS--GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MW-IYSIGNA-----KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp --CC--CCEEEEEECCCC-------CHHHHHHHHHHE---EE-EEEEEEG-----GGHHHHHHHHHHHE-EEEEE
T ss_pred --CC--CCeeEEEECCCchhccCchhHHHHHHHHHhc---Cc-EEEEEcC-----chHHHHHHHHHHCC-CEEEE
Confidence 32 6899999999999887643345788888776 34 4444321 12456777888888 54443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-09 Score=100.80 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCC-----CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNP-----ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~-----~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
...++.+|||+|||+|.++..+++.++. ..++++|+++.....+ +.... .+. ...+..++... ...
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a--~~n~~~~g~---~~~i~~~D~l~---~~~ 198 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA--LVGADLQRQ---KMTLLHQDGLA---NLL 198 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH--HHHHHHHTC---CCEEEESCTTS---CCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH--HHHHHhCCC---CceEEECCCCC---ccc
Confidence 3456789999999999999999887643 3456666666555444 33222 233 34566553332 223
Q ss_pred CCceeEEEEccccccCCchHH----------------HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 252 GVVYDLIYASAVFLHMPDKLV----------------WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~----------------~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
.+.||+|+++..+.+++.... ..+++++.+.|+| ||++++..+..+...-....+++.|.+.|
T Consensus 199 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~-gG~~~~v~p~~~~~~~~~~~ir~~l~~~~ 277 (344)
T 2f8l_A 199 VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP-GGYLFFLVPDAMFGTSDFAKVDKFIKKNG 277 (344)
T ss_dssp CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE-EEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC-CCEEEEEECchhcCCchHHHHHHHHHhCC
Confidence 568999999988776654331 1479999999999 99998876444444444788889998888
Q ss_pred Cc
Q 019282 316 LE 317 (343)
Q Consensus 316 f~ 317 (343)
+.
T Consensus 278 ~~ 279 (344)
T 2f8l_A 278 HI 279 (344)
T ss_dssp EE
T ss_pred eE
Confidence 73
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-09 Score=102.78 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=97.9
Q ss_pred hccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCc
Q 019282 157 SNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRP 236 (343)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~ 236 (343)
.|..+.+..+......+...+...++.+|||+|||+|..+.++++..+...++++|+++........+ ....+. .+
T Consensus 222 ~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~-~~~~g~---~~ 297 (429)
T 1sqg_A 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDN-LKRLGM---KA 297 (429)
T ss_dssp TGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHH-HHHTTC---CC
T ss_pred HHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-HHHcCC---Ce
Confidence 33344444444455555555678889999999999999999999987666677777777655544322 122333 34
Q ss_pred EEEecccCCcCCCCCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhccCCCCcEEEEEecc
Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKLRPYDGRIFVSHNI 296 (343)
Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~LkP~GG~lvi~~~~ 296 (343)
.++.++..++.....++.||+|++. .++++.++.. ...+|+++.++||| ||+++++.-.
T Consensus 298 ~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp-GG~lvystcs 376 (429)
T 1sqg_A 298 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATCS 376 (429)
T ss_dssp EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEESC
T ss_pred EEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECC
Confidence 5555533333211124689999962 3444444421 13589999999999 9999886421
Q ss_pred ccccCCCHHHHHHHHHhc-CCcEEE
Q 019282 297 KFCSRLGGEECTKRLTSL-GLEYIG 320 (343)
Q Consensus 297 ~~~~~~~~~~l~~~L~~a-Gf~~v~ 320 (343)
....-..+.+...+++. +|+.+.
T Consensus 377 -~~~~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 377 -VLPEENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp -CCGGGTHHHHHHHHHHCTTCEECS
T ss_pred -CChhhHHHHHHHHHHhCCCCEEeC
Confidence 11111256677777765 676643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=102.80 Aligned_cols=106 Identities=18% Similarity=0.138 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc-CCCCC-C--
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF-TKFGS-G-- 252 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl-~~~~~-~-- 252 (343)
..++.+|||||||+|..+..+++.++ ...++++|+++. +.+.+++... .+. ..++.++.++..+. +.+.. +
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~g~-~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPN--ATAIAKKYWQKAGV-AEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHHHHHTC-GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCC-CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 34567999999999999999998775 345555555554 4444443322 233 22566666643322 11111 2
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++||+|++.... .....+++++.++|+| ||++++.
T Consensus 147 ~~fD~V~~d~~~-----~~~~~~l~~~~~~Lkp-gG~lv~~ 181 (232)
T 3cbg_A 147 PEFDLIFIDADK-----RNYPRYYEIGLNLLRR-GGLMVID 181 (232)
T ss_dssp CCEEEEEECSCG-----GGHHHHHHHHHHTEEE-EEEEEEE
T ss_pred CCcCEEEECCCH-----HHHHHHHHHHHHHcCC-CeEEEEe
Confidence 689999987542 2334589999999999 9999886
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-09 Score=99.65 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccC--------CC--CCCCcE
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQ--------GL--LHKRPI 237 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~--------~~--~~~~~~ 237 (343)
....+...+.+.++.+|||+|||+|.++..+++..+ ...++++|+++.....+ +++... +. ...++.
T Consensus 93 ~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a--~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA--KKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHH--HHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHH--HHHHHHhhcccccccccccCCceE
Confidence 345555566888999999999999999999998753 35566666666555444 332221 11 113566
Q ss_pred EEecccCCcC-CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------c--
Q 019282 238 IVRGEDMDFT-KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------F-- 298 (343)
Q Consensus 238 ~~~~~~~dl~-~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------~-- 298 (343)
+..++..+.. .+ .++.||+|++.. +.+.. .++++.++||| ||++++..... +
T Consensus 171 ~~~~d~~~~~~~~-~~~~fD~V~~~~-----~~~~~--~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (336)
T 2b25_A 171 FIHKDISGATEDI-KSLTFDAVALDM-----LNPHV--TLPVFYPHLKH-GGVCAVYVVNITQVIELLDGIRTCELALSC 241 (336)
T ss_dssp EEESCTTCCC--------EEEEEECS-----SSTTT--THHHHGGGEEE-EEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEECChHHccccc-CCCCeeEEEECC-----CCHHH--HHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCccc
Confidence 6666444432 12 346899999853 33333 78999999999 99998762100 0
Q ss_pred ---c----cCCC-------HHHHHHHHHhcCCcEEEeeecc
Q 019282 299 ---C----SRLG-------GEECTKRLTSLGLEYIGKKTHD 325 (343)
Q Consensus 299 ---~----~~~~-------~~~l~~~L~~aGf~~v~~~~~~ 325 (343)
. ..+. ..++...|+++||++++.....
T Consensus 242 ~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 242 EKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp EEEECCCCCCEEECC--------------------------
T ss_pred ceEEEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 0 0000 1267778889999888766554
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-10 Score=103.17 Aligned_cols=136 Identities=16% Similarity=0.073 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+++.+|||||||+|..+..+++..+...++++|+|+.....+ ++... .+....++.++.++..++... .+++||
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a--~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD 165 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA--RKYLKQTSCGFDDPRAEIVIANGAEYVRK-FKNEFD 165 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH--HHHCHHHHGGGGCTTEEEEESCHHHHGGG-CSSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHH--HHHhHhhccccCCCceEEEECcHHHHHhh-CCCCce
Confidence 345799999999999999999865556677777777655554 33221 122234667776644433211 246899
Q ss_pred EEEEccccccCCch---HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDK---LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~---~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|++....+++... ....++++++++||| ||++++.....+........+.+.+++. |..+.
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 230 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAETEDPFYDIGWFKLAYRRISKV-FPITR 230 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEE-EEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEE
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCC-CcEEEEEccCcccCHHHHHHHHHHHHHH-CCceE
Confidence 99985432212111 113589999999999 9999987432222111134555666666 55544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=102.15 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...+.+.+.+.+.+.++.+|||||||+|.++..+++.. ..++++|+|+.. .+.+++... .+. ..++.++.++..
T Consensus 13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~--~~~a~~~~~~~~~-~~~v~~~~~D~~ 87 (285)
T 1zq9_A 13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRL--VAELHKRVQGTPV-ASKLQVLVGDVL 87 (285)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHH--HHHHHHHHTTSTT-GGGEEEEESCTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHH--HHHHHHHHHhcCC-CCceEEEEccee
Confidence 45677788888888889999999999999999999863 345566655544 444444322 121 125666766443
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHH--------------HH--HhccCCCCcEEE
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLE--------------RL--ASKLRPYDGRIF 291 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~--------------~l--~r~LkP~GG~lv 291 (343)
++ +. ..||+|+++..++. ..+....+++ ++ +++++| ||.++
T Consensus 88 ~~---~~-~~fD~vv~nlpy~~-~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP-Gg~~y 144 (285)
T 1zq9_A 88 KT---DL-PFFDTCVANLPYQI-SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP-GDKLY 144 (285)
T ss_dssp TS---CC-CCCSEEEEECCGGG-HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT-TCTTC
T ss_pred cc---cc-hhhcEEEEecCccc-chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC-CCccc
Confidence 33 22 27999999765533 2222222332 22 368999 99775
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-10 Score=104.05 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc---CCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS---QGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~---~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
.+++.+|||||||+|..+..+++..+...++++|+|+.....+ ++... .++...++.++.++..++... .+++|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a--r~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~f 169 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS--KKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAF 169 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH--HHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHH--HHHhHHhhcccCCCcEEEEECcHHHHHhh-CCCCc
Confidence 3456899999999999999998865556677777777655554 33221 122234667776644443211 35789
Q ss_pred eEEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEec
Q 019282 256 DLIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 256 DlIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
|+|++....+..+.. ....++++++++|+| ||++++...
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~ 210 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQGE 210 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEE-EEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCC-CeEEEEecC
Confidence 999996544322211 123489999999999 999998753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=100.04 Aligned_cols=140 Identities=14% Similarity=0.079 Sum_probs=85.8
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC--C
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG--S 251 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~--~ 251 (343)
.+.+.++.+|||+|||+|..+..+++..+. ..++++|++......+ +++.. .+.. ++.++.++..++.... .
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~--~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKAL--KSNINRMGVL--NTIIINADMRKYKDYLLKN 153 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHH--HHHHHHTTCC--SEEEEESCHHHHHHHHHHT
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHH--HHHHHHhCCC--cEEEEeCChHhcchhhhhc
Confidence 356788999999999999999999987654 5566666666554443 33322 3332 4566665433332100 1
Q ss_pred CCceeEEEEccccccCCc----------------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc-
Q 019282 252 GVVYDLIYASAVFLHMPD----------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL- 314 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~----------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a- 314 (343)
.+.||+|++...+...+- .....+|+++.++||| ||+++++.-. ....-..+.+...+++.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~stcs-~~~~ene~~v~~~l~~~~ 231 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYSTCS-MEVEENEEVIKYILQKRN 231 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEESC-CCTTSSHHHHHHHHHHCS
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEECC-CChHHhHHHHHHHHHhCC
Confidence 468999998633221110 1124589999999999 9999886421 11112256666667554
Q ss_pred CCcEEEe
Q 019282 315 GLEYIGK 321 (343)
Q Consensus 315 Gf~~v~~ 321 (343)
+|+.+..
T Consensus 232 ~~~~~~~ 238 (274)
T 3ajd_A 232 DVELIII 238 (274)
T ss_dssp SEEEECC
T ss_pred CcEEecC
Confidence 6776554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=88.40 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
...++.+|||+|||+|.++..+++. +...++++|+++... +.++++.. .+. ++.++.++..+ + ++.||
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~--~~a~~~~~~~~~---~~~~~~~d~~~---~--~~~~D 114 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAV--DVLIENLGEFKG---KFKVFIGDVSE---F--NSRVD 114 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHH--HHHHHHTGGGTT---SEEEEESCGGG---C--CCCCS
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHH--HHHHHHHHHcCC---CEEEEECchHH---c--CCCCC
Confidence 4567889999999999999999875 223456666655444 44444332 222 45666653333 3 24899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+|+++..+++........+++++.+++ ||.+++..... -..+.+.+.+++.||+......
T Consensus 115 ~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 115 IVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHLAKP----EVRRFIEKFSWEHGFVVTHRLT 174 (207)
T ss_dssp EEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEECCH----HHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEeCCc----CCHHHHHHHHHHCCCeEEEEEE
Confidence 999999887775444445788888887 35444331100 1145567788999998765443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=99.45 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+++.+.+ +.++.+|||+|||+|.++..+++. ... ++++|.++.+.+.++++.. .++ . +.++.++..
T Consensus 278 ~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~--V~gvD~s~~ai~~A~~n~~~ngl--~-v~~~~~d~~ 347 (425)
T 2jjq_A 278 AVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFN--VKGFDSNEFAIEMARRNVEINNV--D-AEFEVASDR 347 (425)
T ss_dssp HHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCE--EEEEESCHHHHHHHHHHHHHHTC--C-EEEEECCTT
T ss_pred HHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCE--EEEEECCHHHHHHHHHHHHHcCC--c-EEEEECChH
Confidence 3445555554 567889999999999999999884 234 4445555555555554433 233 1 566666444
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
++. .. .||+|++......... .+++.+. .|+| ||.++++.+ +..+...+....|+.......
T Consensus 348 ~~~---~~-~fD~Vv~dPPr~g~~~----~~~~~l~-~l~p-~givyvsc~--------p~tlarDl~~l~y~l~~~~~~ 409 (425)
T 2jjq_A 348 EVS---VK-GFDTVIVDPPRAGLHP----RLVKRLN-REKP-GVIVYVSCN--------PETFARDVKMLDYRIDEIVAL 409 (425)
T ss_dssp TCC---CT-TCSEEEECCCTTCSCH----HHHHHHH-HHCC-SEEEEEESC--------HHHHHHHHHHSSCCEEEEEEE
T ss_pred HcC---cc-CCCEEEEcCCccchHH----HHHHHHH-hcCC-CcEEEEECC--------hHHHHhHHhhCeEEEEEEEEE
Confidence 432 22 8999999654322221 1455554 4999 999999853 333333333333999898999
Q ss_pred cccccc
Q 019282 325 DSLLFN 330 (343)
Q Consensus 325 ~~l~~~ 330 (343)
|.+++.
T Consensus 410 DmFP~T 415 (425)
T 2jjq_A 410 DMFPHT 415 (425)
T ss_dssp CCSTTS
T ss_pred CcCCCC
Confidence 988864
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=104.42 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCC------cCHHHHHHHHH-cCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCG------TLRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCG------tG~~a~~la~~-~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
...++.+..... .++.+||||||| +|..+..+++. ++...++++|+++.+ . . ...++.++
T Consensus 203 ~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m--~---~-------~~~rI~fv 269 (419)
T 3sso_A 203 TPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS--H---V-------DELRIRTI 269 (419)
T ss_dssp HHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG--G---G-------CBTTEEEE
T ss_pred HHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH--h---h-------cCCCcEEE
Confidence 456666665443 346799999999 77777777654 466667777776643 1 1 12367777
Q ss_pred ecccCCcCCCC-----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 240 RGEDMDFTKFG-----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 240 ~~~~~dl~~~~-----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.++..+++ +. .+++||+|++.. .|+..+. ...|++++++||| ||++++.+
T Consensus 270 ~GDa~dlp-f~~~l~~~d~sFDlVisdg-sH~~~d~--~~aL~el~rvLKP-GGvlVi~D 324 (419)
T 3sso_A 270 QGDQNDAE-FLDRIARRYGPFDIVIDDG-SHINAHV--RTSFAALFPHVRP-GGLYVIED 324 (419)
T ss_dssp ECCTTCHH-HHHHHHHHHCCEEEEEECS-CCCHHHH--HHHHHHHGGGEEE-EEEEEEEC
T ss_pred Eecccccc-hhhhhhcccCCccEEEECC-cccchhH--HHHHHHHHHhcCC-CeEEEEEe
Confidence 77555543 21 147899999975 4555443 4599999999999 99999973
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-09 Score=95.91 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+.+.+|||||||+|.++..+++. + ..++++|+|+ .+.+.+++.... +..+.++.++.++..+ +. ++||
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~--~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~---~~--~~fD 141 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAKQLLDL---DI--KKYD 141 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCH--HHHGGGTTTSTTHHHHHTCTTEEEESSGGGS---CC--CCEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCH--HHHHHHHHHHHhhccccCCCeEEEEechHHH---HH--hhCC
Confidence 44579999999999999999886 5 5556666555 445444443211 1223356666554333 32 6899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+|++.. .++.. +++.++++|+| ||++++...
T Consensus 142 ~Ii~d~-----~dp~~--~~~~~~~~L~p-gG~lv~~~~ 172 (262)
T 2cmg_A 142 LIFCLQ-----EPDIH--RIDGLKRMLKE-DGVFISVAK 172 (262)
T ss_dssp EEEESS-----CCCHH--HHHHHHTTEEE-EEEEEEEEE
T ss_pred EEEECC-----CChHH--HHHHHHHhcCC-CcEEEEEcC
Confidence 999862 34433 89999999999 999988643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=96.39 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEc----ChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLER----DELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdi----d~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+.+...++++.+|||||||+|.++..+++. ..++++|+ +...+ . . ........+.+.++.+ .|+..
T Consensus 74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~--~--~-~~~~~~~~~~v~~~~~--~D~~~ 143 (305)
T 2p41_A 74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHE--E--P-IPMSTYGWNLVRLQSG--VDVFF 143 (305)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSC--C--C-CCCCSTTGGGEEEECS--CCTTT
T ss_pred HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHH--H--H-HHhhhcCCCCeEEEec--ccccc
Confidence 444445677899999999999999999885 34566665 22111 1 0 0111111124555544 24443
Q ss_pred CCCCCceeEEEEccccc---cCCchH-HHHHHHHHHhccCCCCcEEEEEe
Q 019282 249 FGSGVVYDLIYASAVFL---HMPDKL-VWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~---hl~~~~-~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++ .++||+|+|..+++ +..+.. ....|..+.++||| ||.|++..
T Consensus 144 l~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lkp-GG~~v~kv 191 (305)
T 2p41_A 144 IP-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN-NTQFCVKV 191 (305)
T ss_dssp SC-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT-TCEEEEEE
T ss_pred CC-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCC-CCEEEEEe
Confidence 32 46899999987763 222221 11478899999999 99988753
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=105.93 Aligned_cols=143 Identities=11% Similarity=0.087 Sum_probs=89.6
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
+...+...++.+|||+|||+|..+..+++..++.+ .++++|.+..+.+.++++.. .+.. +.++.++..++... .
T Consensus 93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g-~V~AvDis~~~l~~a~~n~~r~G~~---v~~~~~Da~~l~~~-~ 167 (464)
T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKG-LLLANEVDGKRVRGLLENVERWGAP---LAVTQAPPRALAEA-F 167 (464)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCS-EEEEECSCHHHHHHHHHHHHHHCCC---CEEECSCHHHHHHH-H
T ss_pred HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCe---EEEEECCHHHhhhh-c
Confidence 33345778899999999999999999998775422 34555555555555554433 3442 55665543333321 2
Q ss_pred CCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 252 GVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 252 ~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
.+.||+|++. .++.+-++. ....+|+.+.++||| ||+|+.+.- .+...-..+.+...+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvysTC-s~~~eEne~vv~~~l 245 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP-GGVLVYSTC-TFAPEENEGVVAHFL 245 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE-EEEEEEEES-CCCGGGTHHHHHHHH
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEec-cCchhcCHHHHHHHH
Confidence 5789999962 233332221 124689999999999 999987631 111112366777777
Q ss_pred Hhc-CCcEEEee
Q 019282 312 TSL-GLEYIGKK 322 (343)
Q Consensus 312 ~~a-Gf~~v~~~ 322 (343)
++. +|+.+...
T Consensus 246 ~~~~~~~l~~~~ 257 (464)
T 3m6w_A 246 KAHPEFRLEDAR 257 (464)
T ss_dssp HHCTTEEEECCC
T ss_pred HHCCCcEEEecc
Confidence 777 68776643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=93.95 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
+++|.+|||+|||+|.+++.++.. +... ++++|.++.....++++.+.+...+++..+.++..++ ...+.||.|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~--V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~---~~~~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAK--VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF---PGENIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCE--EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC---CCCSCEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh---ccccCCCEE
Confidence 578999999999999999999875 3234 4445555555555555544333344677777654444 346789999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--cccccCCCHHHHHHHHHhcCCcEEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--IKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
++..... . ..++..+.++||| ||.+.+... .+.......+.+.+...+.|+++..
T Consensus 197 i~~~p~~----~--~~~l~~a~~~lk~-gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 197 LMGYVVR----T--HEFIPKALSIAKD-GAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp EECCCSS----G--GGGHHHHHHHEEE-EEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred EECCCCc----H--HHHHHHHHHHcCC-CCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence 9864321 1 1278888999999 999866422 1222223367777888899998643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-09 Score=103.09 Aligned_cols=138 Identities=14% Similarity=0.023 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC-CC-CCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK-FG-SGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~-~~-~~~~fD 256 (343)
.++.+|||+|||+|.++..++.. ....++++|+++.+...+ +++.. .++...++.++.++..++.. .. ...+||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A--~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALS--LAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHH--HHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHH--HHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCcc
Confidence 57889999999999999999873 223456666666555544 44433 33322156777765444321 11 135899
Q ss_pred EEEEcccc-----ccCCc--hHHHHHHHHHHhccCCCCcEEEEEeccccccC-CCHHHHHHHHHhcCCcEEEe
Q 019282 257 LIYASAVF-----LHMPD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSR-LGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 257 lIvs~~v~-----~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~-~~~~~l~~~L~~aGf~~v~~ 321 (343)
+|++.... .+..+ .....++..+.++|+| ||.++++........ .-.+.+.+.+.++|.+.+..
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 99985433 12222 2233467888999999 999998854222110 00334445566788885543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-09 Score=104.56 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=89.7
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
+...+...++.+|||+|||+|..+.+++...++ ..++++|++. .+.+.++++.+ .+.. ++.++.++..++...
T Consensus 97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~--~rl~~~~~n~~r~g~~--nv~v~~~Da~~l~~~- 171 (456)
T 3m4x_A 97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP--KRAKILSENIERWGVS--NAIVTNHAPAELVPH- 171 (456)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH--HHHHHHHHHHHHHTCS--SEEEECCCHHHHHHH-
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC--ceEEEeCCHHHhhhh-
Confidence 333457788999999999999999999987654 3444555554 44444444333 3442 455555543333321
Q ss_pred CCCceeEEEEcc------ccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 251 SGVVYDLIYASA------VFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 251 ~~~~fDlIvs~~------v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
.++.||+|++.. ++.+-++. ....+|+.+.++||| ||+++.+.- .+...-..+.+...
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTC-s~~~eEne~vv~~~ 249 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN-KGQLIYSTC-TFAPEENEEIISWL 249 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE-EEEEEEEES-CCCGGGTHHHHHHH
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEe-ecccccCHHHHHHH
Confidence 246899999743 23222221 112589999999999 999987631 11111236778888
Q ss_pred HHhcCCcEEEee
Q 019282 311 LTSLGLEYIGKK 322 (343)
Q Consensus 311 L~~aGf~~v~~~ 322 (343)
+++.||+.+...
T Consensus 250 l~~~~~~l~~~~ 261 (456)
T 3m4x_A 250 VENYPVTIEEIP 261 (456)
T ss_dssp HHHSSEEEECCC
T ss_pred HHhCCCEEEecc
Confidence 899998776643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=92.92 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.++..+.+ ..+..+|||||||+|-++..++ +...++++|||......+ +++..... ....+.. .|+
T Consensus 94 d~fY~~i~~---~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~a--r~~~~~~g--~~~~~~v---~D~ 160 (253)
T 3frh_A 94 DTLYDFIFS---AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVI--TPFAREKD--WDFTFAL---QDV 160 (253)
T ss_dssp HHHHHHHTS---SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHH--HHHHHHTT--CEEEEEE---CCT
T ss_pred HHHHHHHhc---CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHH--HHHHHhcC--CCceEEE---eec
Confidence 345555543 2567799999999999998776 556777888877665555 43332211 1233333 355
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
...++.++||+|++.-++||+.+......+ ++.+.|++ +| ++++++
T Consensus 161 ~~~~~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~-~~-vvVsfP 206 (253)
T 3frh_A 161 LCAPPAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNT-PR-MAVSFP 206 (253)
T ss_dssp TTSCCCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBC-SE-EEEEEE
T ss_pred ccCCCCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcC-CC-EEEEcC
Confidence 444456799999999999998766555455 88889999 54 555543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-08 Score=92.02 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=83.3
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC-cCCCCCCCcee
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD-FTKFGSGVVYD 256 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d-l~~~~~~~~fD 256 (343)
..++.+|||+| |+|.++..++...+...++++|+++ .+.+.++++.. .++ . ++.++.++..+ ++. ..++.||
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~--~~l~~a~~~~~~~g~-~-~v~~~~~D~~~~l~~-~~~~~fD 243 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDE--RLTKFIEKAANEIGY-E-DIEIFTFDLRKPLPD-YALHKFD 243 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCH--HHHHHHHHHHHHHTC-C-CEEEECCCTTSCCCT-TTSSCBS
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC-C-CEEEEEChhhhhchh-hccCCcc
Confidence 34678999999 9999999998754434444555444 55555554433 333 2 56777765444 321 1246899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEE-EEEeccccccCCCH---HHHHHHHH-hcCCcEEE
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI-FVSHNIKFCSRLGG---EECTKRLT-SLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~l-vi~~~~~~~~~~~~---~~l~~~L~-~aGf~~v~ 320 (343)
+|+++..++... ...+++++.++||| ||++ ++.... ..-.. ..+.+.+. +.||....
T Consensus 244 ~Vi~~~p~~~~~---~~~~l~~~~~~Lkp-gG~~~~~~~~~---~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 244 TFITDPPETLEA---IRAFVGRGIATLKG-PRCAGYFGITR---RESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp EEEECCCSSHHH---HHHHHHHHHHTBCS-TTCEEEEEECT---TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred EEEECCCCchHH---HHHHHHHHHHHccc-CCeEEEEEEec---CcCCHHHHHHHHHHHHHhcCcchhh
Confidence 999987765432 35589999999999 9954 554321 11224 56777777 89997654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=97.54 Aligned_cols=151 Identities=14% Similarity=0.138 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+++.+.+.+.+.++.+|||+|||+|.++..+++. ...++++|+ ++.+.+.++++.. .+. . ++.++.++..
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~--s~~al~~A~~n~~~~~~-~-~v~f~~~d~~ 344 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEG--VPALVEKGQQNARLNGL-Q-NVTFYHENLE 344 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEES--CHHHHHHHHHHHHHTTC-C-SEEEEECCTT
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeC--CHHHHHHHHHHHHHcCC-C-ceEEEECCHH
Confidence 4556777777777788889999999999999999985 234445554 4455555554433 233 2 5777777554
Q ss_pred CcC-CCC-CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFT-KFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~-~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+.. ..+ .++.||+|++.--..-. . .+++.+.+ ++| ++.++++.+.... ..+ ...|.+.||+.....
T Consensus 345 ~~l~~~~~~~~~fD~Vv~dPPr~g~--~---~~~~~l~~-~~p-~~ivyvsc~p~tl----ard-~~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 345 EDVTKQPWAKNGFDKVLLDPARAGA--A---GVMQQIIK-LEP-IRIVYVSCNPATL----ARD-SEALLKAGYTIARLA 412 (433)
T ss_dssp SCCSSSGGGTTCCSEEEECCCTTCC--H---HHHHHHHH-HCC-SEEEEEESCHHHH----HHH-HHHHHHTTCEEEEEE
T ss_pred HHhhhhhhhcCCCCEEEECCCCccH--H---HHHHHHHh-cCC-CeEEEEECChHHH----Hhh-HHHHHHCCcEEEEEE
Confidence 422 111 24589999986443222 1 24555543 789 8888887432111 122 345677899999988
Q ss_pred ecccccc-chhHH
Q 019282 323 THDSLLF-NHYEI 334 (343)
Q Consensus 323 ~~~~l~~-~~~e~ 334 (343)
..|.+++ .|.|.
T Consensus 413 ~~d~Fp~t~HvE~ 425 (433)
T 1uwv_A 413 MLDMFPHTGHLES 425 (433)
T ss_dssp EECCSTTSSCCEE
T ss_pred EeccCCCCCeEEE
Confidence 8898886 44553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=94.08 Aligned_cols=120 Identities=12% Similarity=0.041 Sum_probs=76.9
Q ss_pred cCCCCCCeEEEEcC------CcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEE-EecccCCcCC
Q 019282 177 SHITPNSHVLEIGC------GTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPII-VRGEDMDFTK 248 (343)
Q Consensus 177 ~~l~~~~rVLDIGC------GtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~dl~~ 248 (343)
..++++.+|||+|| |+|. ..+++..+ ...++++|+++. . .++.+ +.++ +.+
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---------v-------~~v~~~i~gD---~~~ 117 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---------V-------SDADSTLIGD---CAT 117 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---------B-------CSSSEEEESC---GGG
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---------C-------CCCEEEEECc---ccc
Confidence 46788999999999 4466 44555555 345566666653 1 13445 6653 333
Q ss_pred CCCCCceeEEEEccccccC--------C-chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 249 FGSGVVYDLIYASAVFLHM--------P-DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl--------~-~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
....++||+|+++...+.. . ......++++++++||| ||.|++..... ...+++.+.+++.||..+
T Consensus 118 ~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp-GG~~v~~~~~~----~~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 118 VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAVKITEH----SWNADLYKLMGHFSWWTA 192 (290)
T ss_dssp CCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEEEECSS----SCCHHHHHHHTTEEEEEE
T ss_pred CCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCC-CcEEEEEEecc----CCHHHHHHHHHHcCCcEE
Confidence 3234689999997543211 0 12233589999999999 99999864211 113578888999999876
Q ss_pred Eee
Q 019282 320 GKK 322 (343)
Q Consensus 320 ~~~ 322 (343)
...
T Consensus 193 ~~~ 195 (290)
T 2xyq_A 193 FVT 195 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=99.18 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=87.5
Q ss_pred CCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEE
Q 019282 161 EPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIV 239 (343)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~ 239 (343)
+++..++.....+... .++.+|||+|||+|.++..++... ...++++|+++... +.++++.. .++...++.++
T Consensus 203 gff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al--~~a~~n~~~ngl~~~~v~~~ 276 (396)
T 3c0k_A 203 GYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEAL--DIARQNVELNKLDLSKAEFV 276 (396)
T ss_dssp SSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHH--HHHHHHHHHTTCCGGGEEEE
T ss_pred CcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHH--HHHHHHHHHcCCCccceEEE
Confidence 3333444455555443 577899999999999999999842 23455565555444 44444433 23302256677
Q ss_pred ecccCCcCC-CC-CCCceeEEEEccccccC-------CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHH
Q 019282 240 RGEDMDFTK-FG-SGVVYDLIYASAVFLHM-------PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTK 309 (343)
Q Consensus 240 ~~~~~dl~~-~~-~~~~fDlIvs~~v~~hl-------~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~ 309 (343)
.++..++.. +. ..+.||+|++....... .......++.++.+.|+| ||.++++........-. .+.+.+
T Consensus 277 ~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~i~~ 355 (396)
T 3c0k_A 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE-GGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE-EEEEEEEECCTTCCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCcCCHHHHHHHHHH
Confidence 664444321 10 14689999996432111 012344589999999999 99999875322211000 334445
Q ss_pred HHHhcCCcE
Q 019282 310 RLTSLGLEY 318 (343)
Q Consensus 310 ~L~~aGf~~ 318 (343)
.+.++|++.
T Consensus 356 ~~~~~g~~~ 364 (396)
T 3c0k_A 356 AAIDAGRDV 364 (396)
T ss_dssp HHHHHTCCE
T ss_pred HHHHcCCeE
Confidence 667788544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-09 Score=98.21 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
+.++.+|||+|||+|.++.. +. ....++++|+++. +.+.++++...+....++.++.++..++. +.||+|
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~--ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~V 262 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPH--AIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRV 262 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHH--HHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEE
T ss_pred cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEE
Confidence 45788999999999999998 76 3344555555554 44444544332222235677776444332 689999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhc-CCcEEEeeecc
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSL-GLEYIGKKTHD 325 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~a-Gf~~v~~~~~~ 325 (343)
++..... . ..++..+.++|+| ||.+++...... .+...+.++++ |++.+..+...
T Consensus 263 i~dpP~~--~----~~~l~~~~~~L~~-gG~l~~~~~~~~-----~~~~~~~l~~~~~~~i~~~~~v~ 318 (336)
T 2yx1_A 263 IMNLPKF--A----HKFIDKALDIVEE-GGVIHYYTIGKD-----FDKAIKLFEKKCDCEVLEKRIVK 318 (336)
T ss_dssp EECCTTT--G----GGGHHHHHHHEEE-EEEEEEEEEESS-----SHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EECCcHh--H----HHHHHHHHHHcCC-CCEEEEEEeecC-----chHHHHHHHHhcCCcEEEEEEEe
Confidence 9863221 1 1378999999999 999887632121 34556667766 78766555433
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-08 Score=98.38 Aligned_cols=135 Identities=14% Similarity=0.080 Sum_probs=82.7
Q ss_pred HhcCCC--CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC
Q 019282 175 EASHIT--PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 175 ~~~~l~--~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~ 251 (343)
..+... ++.+|||+|||+|..+.++++..++. ..++++|.+..+.+.++++.. .+.. ++.++.++..++... .
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~--nv~~~~~D~~~~~~~-~ 184 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGIS--NVALTHFDGRVFGAA-V 184 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCCSTTHHHH-S
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHhhhh-c
Confidence 334555 89999999999999999999976532 234444555555554444333 3432 456666544443321 2
Q ss_pred CCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 252 GVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 252 ~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
.+.||+|++. .++.+.++. ....+|+++.++||| ||+++++.-. ....-..+.+...+
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~LvysTcs-~~~~Ene~vv~~~l 262 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP-GGTLVYSTCT-LNQEENEAVCLWLK 262 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC-CSSTTTHHHHHHHH
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeccc-CCcccCHHHHHHHH
Confidence 4689999973 233332221 123589999999999 9999886421 11112255667777
Q ss_pred HhcC
Q 019282 312 TSLG 315 (343)
Q Consensus 312 ~~aG 315 (343)
++.+
T Consensus 263 ~~~~ 266 (479)
T 2frx_A 263 ETYP 266 (479)
T ss_dssp HHST
T ss_pred HHCC
Confidence 7775
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=96.26 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
++.....+.. ..+++.+|||+|||+|.++..++.. . ..++++|+ ++.+.+.++++.+ .+.. ..+..++..
T Consensus 201 qr~~r~~l~~--~~~~g~~VLDlg~GtG~~sl~~a~~-g-a~V~avDi--s~~al~~a~~n~~~ng~~---~~~~~~D~~ 271 (393)
T 4dmg_A 201 QRENRRLFEA--MVRPGERVLDVYSYVGGFALRAARK-G-AYALAVDK--DLEALGVLDQAALRLGLR---VDIRHGEAL 271 (393)
T ss_dssp GHHHHHHHHT--TCCTTCEEEEESCTTTHHHHHHHHT-T-CEEEEEES--CHHHHHHHHHHHHHHTCC---CEEEESCHH
T ss_pred HHHHHHHHHH--HhcCCCeEEEcccchhHHHHHHHHc-C-CeEEEEEC--CHHHHHHHHHHHHHhCCC---CcEEEccHH
Confidence 3444444432 3456899999999999999999984 2 23445555 4455555554433 3332 123344433
Q ss_pred CcCCCCCCCceeEEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCH----HHHHHHHHh
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGG----EECTKRLTS 313 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~----~~l~~~L~~ 313 (343)
++.... .+.||+|++......-.. .....++..+.++||| ||.++++.... .... +.+.+.+.+
T Consensus 272 ~~l~~~-~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~Lkp-GG~Lv~~s~s~---~~~~~~f~~~v~~a~~~ 346 (393)
T 4dmg_A 272 PTLRGL-EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAE-EGFLWLSSCSY---HLRLEDLLEVARRAAAD 346 (393)
T ss_dssp HHHHTC-CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEE-EEEEEEEECCT---TSCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCC---CCCHHHHHHHHHHHHHH
Confidence 332111 334999998754322111 1223588899999999 99998653211 1223 344455566
Q ss_pred cCCcEE
Q 019282 314 LGLEYI 319 (343)
Q Consensus 314 aGf~~v 319 (343)
+|.+..
T Consensus 347 ~g~~~~ 352 (393)
T 4dmg_A 347 LGRRLR 352 (393)
T ss_dssp HTCCEE
T ss_pred hCCeEE
Confidence 675543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=93.72 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~ 238 (343)
|..+-....+.+.+.+.+.+.++.+|||||||+|.++..+++. +..++++|.+..+.+.+++... .+. .++.+
T Consensus 21 Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~----~~~v~~vDi~~~~~~~a~~~~~~~~~--~~v~~ 94 (299)
T 2h1r_A 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL----AKKVITIDIDSRMISEVKKRCLYEGY--NNLEV 94 (299)
T ss_dssp --CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT----SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEC
T ss_pred ccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCC--CceEE
Confidence 3333345667777877788888999999999999999999874 2345555555555555554332 232 24556
Q ss_pred EecccCCcCCCCCCCceeEEEEccccccCCchHHHHHH---------------HHHHhccCCCCc
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGL---------------ERLASKLRPYDG 288 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L---------------~~l~r~LkP~GG 288 (343)
+.++..+ ++ ...||+|+++..++ +..+....++ +.+.|+++| +|
T Consensus 95 ~~~D~~~---~~-~~~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~-~G 153 (299)
T 2h1r_A 95 YEGDAIK---TV-FPKFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN-VG 153 (299)
T ss_dssp ----CCS---SC-CCCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC-TT
T ss_pred EECchhh---CC-cccCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcC-CC
Confidence 6554333 32 24899999976653 4444333344 345677887 77
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=104.27 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
++.....+.. ..++.+|||+|||||.++..++.. ....++++|+++.. .+.++++.+ .++...++.++.++..
T Consensus 527 ~r~~r~~l~~---~~~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~a--l~~a~~N~~~ngl~~~~v~~i~~D~~ 600 (703)
T 3v97_A 527 HRIARRMLGQ---MSKGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTY--LEWAERNLRLNGLTGRAHRLIQADCL 600 (703)
T ss_dssp GHHHHHHHHH---HCTTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHH--HHHHHHHHHHTTCCSTTEEEEESCHH
T ss_pred HHHHHHHHHH---hcCCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHH--HHHHHHHHHHcCCCccceEEEecCHH
Confidence 4444444443 236889999999999999998873 22335555555544 444454433 3443246777777555
Q ss_pred CcCCCCCCCceeEEEEcccccc-------C--CchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 245 DFTKFGSGVVYDLIYASAVFLH-------M--PDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~h-------l--~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
++... ..++||+|++...... . .......++..+.++|+| ||.++++....... .. .+.+++.|
T Consensus 601 ~~l~~-~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp-gG~L~~s~~~~~~~-~~----~~~l~~~g 673 (703)
T 3v97_A 601 AWLRE-ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA-GGTIMFSNNKRGFR-MD----LDGLAKLG 673 (703)
T ss_dssp HHHHH-CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEE-EEEEEEEECCTTCC-CC----HHHHHHTT
T ss_pred HHHHh-cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEECCcccc-cC----HHHHHHcC
Confidence 43212 2468999998643210 0 112334589999999999 99999876431111 11 45677899
Q ss_pred CcEEE
Q 019282 316 LEYIG 320 (343)
Q Consensus 316 f~~v~ 320 (343)
|+...
T Consensus 674 ~~~~~ 678 (703)
T 3v97_A 674 LKAQE 678 (703)
T ss_dssp EEEEE
T ss_pred Cceee
Confidence 87443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=97.58 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc-------------CCCceEEEEcChhHHHHHHHHhcccCCCCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL-------------NPENFHCLERDELSLMAAFRYELPSQGLLH 233 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~-------------~~~~~~vvdid~s~~~~a~a~~~~~~~~~~ 233 (343)
+.+.+.+.+.+...++.+|||.|||+|.++..+++.+ ....++++|+++.....+..+. ...+...
T Consensus 157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl-~l~g~~~ 235 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL-YLHGIGT 235 (445)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH-HHTTCCS
T ss_pred HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH-HHhCCCc
Confidence 4567777777777778899999999999999988764 2356788888876666654332 1233321
Q ss_pred CCcEEEecccCCcCCCCCCCceeEEEEccccccCCch---------------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 234 KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDK---------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 234 ~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~---------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
....+..++... .+..+.||+|+++..+.+.... ....+++.+.+.||| ||++.+..+...
T Consensus 236 ~~~~i~~gD~l~---~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~-gG~~a~V~p~~~ 311 (445)
T 2okc_A 236 DRSPIVCEDSLE---KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT-GGRAAVVLPDNV 311 (445)
T ss_dssp SCCSEEECCTTT---SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE-EEEEEEEEEHHH
T ss_pred CCCCEeeCCCCC---CcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc-CCEEEEEECCcc
Confidence 133455553332 2233589999999777654321 112489999999999 999977654332
Q ss_pred ccCCC-HHHHHHHH-HhcCCcEE
Q 019282 299 CSRLG-GEECTKRL-TSLGLEYI 319 (343)
Q Consensus 299 ~~~~~-~~~l~~~L-~~aGf~~v 319 (343)
...-+ ...+++.| +..++..+
T Consensus 312 L~~~~~~~~iR~~L~~~~~l~~i 334 (445)
T 2okc_A 312 LFEAGAGETIRKRLLQDFNLHTI 334 (445)
T ss_dssp HHCSTHHHHHHHHHHHHEEEEEE
T ss_pred cccCcHHHHHHHHHHhcCcEEEE
Confidence 22212 45666644 45555433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=95.44 Aligned_cols=131 Identities=8% Similarity=-0.047 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDlI 258 (343)
++.+|||+|||+|.++..++.. ...++++|+++ .+.+.++++...+... ++.++.++..++.... .+++||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~--~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSA--EALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCH--HHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCH--HHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEE
Confidence 7789999999999999999985 23445555555 4444445443322222 2667766444432110 14689999
Q ss_pred EEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCc
Q 019282 259 YASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLE 317 (343)
Q Consensus 259 vs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~ 317 (343)
++......... .....++..+.++|+| ||.++++.......... .+.+.+.+.++|..
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 349 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATASCSHHMTEPLFYAMVAEAAQDAHRL 349 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 98543322111 2334588999999999 99998875322111000 23444566677743
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-08 Score=96.23 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-C-CCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-G-SGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~-~~~~fD 256 (343)
+++.+|||+|||+|.++..++.. +...++++|+++.....+ +++.. .++. .++.++.++..++... . ..++||
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a--~~n~~~n~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETA--KENAKLNGVE-DRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHH--HHHHHHTTCG-GGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHH--HHHHHHcCCC-ccceEEECCHHHHHHHHHhhCCCCC
Confidence 47889999999999999999984 333556666655554444 44333 2332 2566776644433211 0 146899
Q ss_pred EEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHH----HHHHHHhcCCcEE
Q 019282 257 LIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEE----CTKRLTSLGLEYI 319 (343)
Q Consensus 257 lIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~----l~~~L~~aGf~~v 319 (343)
+|++......... .....++.++.++|+| ||.++++.... ....+. +.+.+.+.|....
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~ 361 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD-GGILVTCSCSQ---HVDLQMFKDMIIAAGAKAGKFLK 361 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE-EEEEEEEECCT---TSCHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEECCC---CCCHHHHHHHHHHHHHHcCCeEE
Confidence 9999643322211 2344588999999999 99988764221 122333 3445556675443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-09 Score=99.18 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+.+.+.+.+.+.++.+|||||||+|.++..+++.. ..++++|.+..+.+.+++... ...++.++.++..++
T Consensus 15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~----~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS----KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF 87 (245)
T ss_dssp TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS----SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence 3456677777888889999999999999999999853 346666666555554433221 122455665544333
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHH----------HH----HHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWV----------GL----ERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~----------~L----~~l~r~LkP~GG~lvi~ 293 (343)
+ +..+++| .|+++..+. ........ ++ +.+.++|+| ||.+++.
T Consensus 88 ~-~~~~~~f-~vv~n~Py~-~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~-~G~l~v~ 144 (245)
T 1yub_A 88 Q-FPNKQRY-KIVGNIPYH-LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI-HRTLGLL 144 (245)
T ss_dssp T-CCCSSEE-EEEEECCSS-SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG-GGSHHHH
T ss_pred C-cccCCCc-EEEEeCCcc-ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC-CCchhhh
Confidence 3 2223578 666654331 21111111 34 669999999 9988664
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-08 Score=88.48 Aligned_cols=96 Identities=9% Similarity=0.209 Sum_probs=59.8
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
|..+-..+.+.+.+.+.+.+.++.+|||||||+|.++..+++.. . .++++|.+..+.+.+++.... ..++.++
T Consensus 9 gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~--~v~~vD~~~~~~~~a~~~~~~---~~~v~~~ 81 (244)
T 1qam_A 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--N--FVTAIEIDHKLCKTTENKLVD---HDNFQVL 81 (244)
T ss_dssp -CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--S--EEEEECSCHHHHHHHHHHTTT---CCSEEEE
T ss_pred CccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--C--eEEEEECCHHHHHHHHHhhcc---CCCeEEE
Confidence 33333456678888888888889999999999999999999853 3 455555555555555543321 1356677
Q ss_pred ecccCCcCCCCCCCceeEEEEcccc
Q 019282 240 RGEDMDFTKFGSGVVYDLIYASAVF 264 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~~v~ 264 (343)
.++..++. +.....| .|+++..+
T Consensus 82 ~~D~~~~~-~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 82 NKDILQFK-FPKNQSY-KIFGNIPY 104 (244)
T ss_dssp CCCGGGCC-CCSSCCC-EEEEECCG
T ss_pred EChHHhCC-cccCCCe-EEEEeCCc
Confidence 66544443 2212355 45555433
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=91.63 Aligned_cols=148 Identities=12% Similarity=0.110 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.+++.+.+..... +.+|||+|||+|.++..+++.. . .++++|.++.+.+.++++.. .++ .++.++.++..
T Consensus 199 ~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~--~--~V~gvd~~~~ai~~a~~n~~~ng~--~~v~~~~~d~~ 271 (369)
T 3bt7_A 199 NIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF--D--RVLATEIAKPSVAAAQYNIAANHI--DNVQIIRMAAE 271 (369)
T ss_dssp HHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS--S--EEEEECCCHHHHHHHHHHHHHTTC--CSEEEECCCSH
T ss_pred HHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC--C--EEEEEECCHHHHHHHHHHHHHcCC--CceEEEECCHH
Confidence 456677777766654 5789999999999999888732 2 45566666666665555443 333 25677766544
Q ss_pred CcCC-CCC-------------CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 245 DFTK-FGS-------------GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 245 dl~~-~~~-------------~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
++.. +.. +..||+|+...-..- ...++.+.|+| +|.+++..-.... -..++..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~-~g~ivyvsc~p~t---~ard~~~- 338 (369)
T 3bt7_A 272 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQA-YPRILYISCNPET---LCKNLET- 338 (369)
T ss_dssp HHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTT-SSEEEEEESCHHH---HHHHHHH-
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECcCccc--------cHHHHHHHHhC-CCEEEEEECCHHH---HHHHHHH-
Confidence 4321 111 137999987532211 23456666778 8887654210000 0233333
Q ss_pred HHhcCCcEEEeeecccccc-chhHH
Q 019282 311 LTSLGLEYIGKKTHDSLLF-NHYEI 334 (343)
Q Consensus 311 L~~aGf~~v~~~~~~~l~~-~~~e~ 334 (343)
|. .||+.......|.+|. .|.|.
T Consensus 339 l~-~~y~~~~~~~~D~FP~T~HvE~ 362 (369)
T 3bt7_A 339 LS-QTHKVERLALFDQFPYTHHMQC 362 (369)
T ss_dssp HH-HHEEEEEEEEECCSTTSSCCEE
T ss_pred Hh-hCcEEEEEEeeccCCCCCcEEE
Confidence 33 3799999999999886 44553
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=87.10 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=64.2
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....+.+.+.+.+.+.++.+|||||||+|.++..+++. ...++++|+|......+ ++... + ..++.++.++..
T Consensus 34 ~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a--~~~~~-~--~~~v~vi~gD~l 106 (295)
T 3gru_A 34 IDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYA--NKLKE-L--YNNIEIIWGDAL 106 (295)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHH--HHHHH-H--CSSEEEEESCTT
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHH--HHHhc-c--CCCeEEEECchh
Confidence 34567888888889999999999999999999999986 35677777777655544 33222 1 125677776444
Q ss_pred CcCCCCCCCceeEEEEcccc
Q 019282 245 DFTKFGSGVVYDLIYASAVF 264 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~ 264 (343)
++. + .+..||.|+++..+
T Consensus 107 ~~~-~-~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 107 KVD-L-NKLDFNKVVANLPY 124 (295)
T ss_dssp TSC-G-GGSCCSEEEEECCG
T ss_pred hCC-c-ccCCccEEEEeCcc
Confidence 432 2 23479999988665
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.7e-07 Score=83.68 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+.+.+.+..++.++ +|||||||+|.++..+++.. ..++++|+|......+ ++... ..++.++.++..+
T Consensus 32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l--~~~~~----~~~v~vi~~D~l~ 102 (271)
T 3fut_A 32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVL--EETLS----GLPVRLVFQDALL 102 (271)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHH--HHHTT----TSSEEEEESCGGG
T ss_pred CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHH--HHhcC----CCCEEEEECChhh
Confidence 45677778888889999 99999999999999999853 5677777777665554 33221 2366777774444
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLER 278 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~ 278 (343)
+. +.....+|.|+++.-+ ++..+....+++.
T Consensus 103 ~~-~~~~~~~~~iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 103 YP-WEEVPQGSLLVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp SC-GGGSCTTEEEEEEECS-SCCHHHHHHHHHH
T ss_pred CC-hhhccCccEEEecCcc-cccHHHHHHHhcC
Confidence 32 2111368999888766 5555544344443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.4e-07 Score=83.13 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
...+.+.+.+.+++.++.+|||||||+|.++..+++.. ..++++|+|+. +.+.+++.... ..++.++.++..+
T Consensus 14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~--~~~~~~~~~~~---~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRD--LVAFLQKKYNQ---QKNITIYQNDALQ 86 (255)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHH--HHHHHHHHHTT---CTTEEEEESCTTT
T ss_pred CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHH--HHHHHHHHHhh---CCCcEEEEcchHh
Confidence 35577778888889999999999999999999998843 44556666554 44444443322 2366777775554
Q ss_pred cC--CCCCCCceeEEEEcccc
Q 019282 246 FT--KFGSGVVYDLIYASAVF 264 (343)
Q Consensus 246 l~--~~~~~~~fDlIvs~~v~ 264 (343)
+. ++..+++|| |+++.-+
T Consensus 87 ~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 87 FDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp CCGGGSCCSSCEE-EEEECCH
T ss_pred CCHHHhccCCCeE-EEecCCc
Confidence 42 111135788 6666544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=80.73 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
-.++..+.+...++++.+|||+|||+|.++..++...+...+.++++.... .. .-...... ..++..+..+ .+.
T Consensus 60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl--~~--~pi~~~~~-g~~ii~~~~~-~dv 133 (277)
T 3evf_A 60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG--HE--KPMNVQSL-GWNIITFKDK-TDI 133 (277)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT--CC--CCCCCCBT-TGGGEEEECS-CCT
T ss_pred HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC--cc--cccccCcC-CCCeEEEecc-cee
Confidence 334555555577888899999999999999988764333333344443211 00 00000000 1123333332 233
Q ss_pred CCCCCCCceeEEEEccccccCCchHHH-----HHHHHHHhccCCCC-cEEEEEe
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVW-----VGLERLASKLRPYD-GRIFVSH 294 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~-----~~L~~l~r~LkP~G-G~lvi~~ 294 (343)
..+ .+++||+|+|..+.+ .+....+ .+|+.+.++|+| | |.|++-.
T Consensus 134 ~~l-~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~Lkp-G~G~FV~KV 184 (277)
T 3evf_A 134 HRL-EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLAC-GVDNFCVKV 184 (277)
T ss_dssp TTS-CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT-CCSEEEEEE
T ss_pred hhc-CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCC-CCCeEEEEe
Confidence 333 356899999987775 4443222 346888999999 9 9998853
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=86.84 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC------------------CceEEEEcChhHHHHHHHHhccc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP------------------ENFHCLERDELSLMAAFRYELPS 228 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~------------------~~~~vvdid~s~~~~a~a~~~~~ 228 (343)
+.+.+.+.+.+...++.+|||.|||+|.++..+++.+.. ..++++++++.....+..+-. .
T Consensus 155 ~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~-l 233 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL-L 233 (541)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH-H
Confidence 445666666667777889999999999999988876521 357888888877666644321 1
Q ss_pred CCCCC---CCcEEEecccCCcCCCCCCCceeEEEEccccccCCc------------hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 229 QGLLH---KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD------------KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 229 ~~~~~---~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~------------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+... ....+..++....... ..+.||+|+++-.+..... .....++..+.+.||| ||++.+.
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~-~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~-gGr~a~V 311 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP-GGRAAVV 311 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHH-TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccc-cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC-CCEEEEE
Confidence 23321 0134555533322111 2468999999876654321 1122489999999999 9998776
Q ss_pred eccccccCCC-HHHHHHHHHhcC
Q 019282 294 HNIKFCSRLG-GEECTKRLTSLG 315 (343)
Q Consensus 294 ~~~~~~~~~~-~~~l~~~L~~aG 315 (343)
.+..+...-+ ...+++.|.+.+
T Consensus 312 ~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 312 VPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp EEHHHHHCCTHHHHHHHHHHHHE
T ss_pred ecCcceecCcHHHHHHHHHhhcC
Confidence 5433322222 456777776654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=82.69 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------------------------------------
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-------------------------------------- 205 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-------------------------------------- 205 (343)
+..+.+...+.......++.+|||.+||+|.+++.++....+
T Consensus 178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 345667777877788888999999999999999998775322
Q ss_pred CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CC-chHHHHHHHHHHhc
Q 019282 206 ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MP-DKLVWVGLERLASK 282 (343)
Q Consensus 206 ~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~-~~~~~~~L~~l~r~ 282 (343)
..++++|+|+.....+ +++.. .++. ..+.+..++..+ +...+.||+|+++--+.. +. ......+.+++.+.
T Consensus 258 ~~V~GvDid~~ai~~A--r~Na~~~gl~-~~i~~~~~D~~~---l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~ 331 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIA--RENAEIAGVD-EYIEFNVGDATQ---FKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYA 331 (385)
T ss_dssp CCEEEEESCHHHHHHH--HHHHHHHTCG-GGEEEEECCGGG---CCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHH--HHHHHHcCCC-CceEEEECChhh---cCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHH
Confidence 3466666666555555 44333 3332 256666664444 334568999999877642 22 12333345544444
Q ss_pred cC--CCCcEEEEEe
Q 019282 283 LR--PYDGRIFVSH 294 (343)
Q Consensus 283 Lk--P~GG~lvi~~ 294 (343)
|| + ||.+++..
T Consensus 332 lk~~~-g~~~~iit 344 (385)
T 3ldu_A 332 FRKLK-NWSYYLIT 344 (385)
T ss_dssp HHTSB-SCEEEEEE
T ss_pred HhhCC-CCEEEEEE
Confidence 44 4 66666553
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.6e-06 Score=79.66 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=79.4
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------------------------------------
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-------------------------------------- 205 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-------------------------------------- 205 (343)
++.+.+...++......++..|||.+||+|.+++.++....+
T Consensus 177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 356677777777788888999999999999999988764432
Q ss_pred CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CCc-hHHHHHHHHHHhc
Q 019282 206 ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MPD-KLVWVGLERLASK 282 (343)
Q Consensus 206 ~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~~-~~~~~~L~~l~r~ 282 (343)
..++++|+|+.+...+ +++.. .++. +.+.+..++..++. ..+.||+|+++--+.. +++ .....+...+.+.
T Consensus 257 ~~v~GvDid~~al~~A--r~Na~~~gl~-~~I~~~~~D~~~l~---~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~ 330 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIA--RKNAREVGLE-DVVKLKQMRLQDFK---TNKINGVLISNPPYGERLLDDKAVDILYNEMGET 330 (384)
T ss_dssp CCEEEEESCHHHHHHH--HHHHHHTTCT-TTEEEEECCGGGCC---CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHH--HHHHHHcCCC-CceEEEECChHHCC---ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence 2366666666555554 44433 3443 35677776444443 3458999999866532 222 3333455544444
Q ss_pred cC--CCCcEEEEEe
Q 019282 283 LR--PYDGRIFVSH 294 (343)
Q Consensus 283 Lk--P~GG~lvi~~ 294 (343)
|| | ||.+++..
T Consensus 331 lk~~~-g~~~~iit 343 (384)
T 3ldg_A 331 FAPLK-TWSQFILT 343 (384)
T ss_dssp HTTCT-TSEEEEEE
T ss_pred HhhCC-CcEEEEEE
Confidence 43 6 78877654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-07 Score=81.43 Aligned_cols=135 Identities=17% Similarity=0.134 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHc-------CC-----CceEEEEcCh---hHHHH---------HHHHhcccC------
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYL-------NP-----ENFHCLERDE---LSLMA---------AFRYELPSQ------ 229 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~-------~~-----~~~~vvdid~---s~~~~---------a~a~~~~~~------ 229 (343)
.+..+|||||||+|..+..+++.. +. ..++.++..+ ..+.. +.++++.+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 345799999999999998877653 32 2344455443 11111 122222111
Q ss_pred -----CCCC--CCcEEEecccCC-cCCCCC--CCceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 230 -----GLLH--KRPIIVRGEDMD-FTKFGS--GVVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 230 -----~~~~--~~~~~~~~~~~d-l~~~~~--~~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
.... .++.++.+++.+ ++.... ...||+|+.-. .....++-....+|+.++++|+| ||+|+. ..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p-GG~l~t-ys--- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP-GGTLAT-FT--- 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE-EEEEEE-SC---
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC-CcEEEE-Ee---
Confidence 0111 133455555444 232211 13799999853 22222332234589999999999 999863 11
Q ss_pred ccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 299 CSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
....++..|.++||++.....
T Consensus 214 ----aa~~vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 214 ----SAGFVRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp ----CBHHHHHHHHHHTEEEEEECC
T ss_pred ----CCHHHHHHHHHCCCEEEeCCC
Confidence 124678889999999876443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-06 Score=80.02 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--------------------------------------
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-------------------------------------- 205 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-------------------------------------- 205 (343)
++.+.+...++......++..|||.+||+|.+++.++....+
T Consensus 184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 456777777887888888999999999999999888765432
Q ss_pred CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CCc-hHHHHHHHHHHhc
Q 019282 206 ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MPD-KLVWVGLERLASK 282 (343)
Q Consensus 206 ~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~~-~~~~~~L~~l~r~ 282 (343)
..++++|+++.++..+ +++.. .++. ..+.+..++..++. ..+.||+|+++--+.. +.+ .....+...+.+.
T Consensus 264 ~~V~GvDid~~al~~A--r~Na~~~gl~-~~I~~~~~D~~~~~---~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~ 337 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIA--KQNAVEAGLG-DLITFRQLQVADFQ---TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIV 337 (393)
T ss_dssp CCEEEEESCHHHHHHH--HHHHHHTTCT-TCSEEEECCGGGCC---CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHH--HHHHHHcCCC-CceEEEECChHhCC---CCCCCCEEEECCCCccccCCchhHHHHHHHHHHH
Confidence 2366666666555554 44433 3443 35777776444443 3468999999966532 222 2222334433333
Q ss_pred c--CCCCcEEEEEe
Q 019282 283 L--RPYDGRIFVSH 294 (343)
Q Consensus 283 L--kP~GG~lvi~~ 294 (343)
| -| ||.+++..
T Consensus 338 lk~~~-g~~~~iit 350 (393)
T 3k0b_A 338 YKRMP-TWSVYVLT 350 (393)
T ss_dssp HHTCT-TCEEEEEE
T ss_pred HhcCC-CCEEEEEE
Confidence 3 36 77776654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.7e-06 Score=78.49 Aligned_cols=142 Identities=12% Similarity=0.099 Sum_probs=84.0
Q ss_pred CCeEEEEcCCcCHHHHHHHH--------Hc-------CCCceEEEEcChhHHHHHHHHhcccC-C-C--------CCCCc
Q 019282 182 NSHVLEIGCGTLRVGVHFIR--------YL-------NPENFHCLERDELSLMAAFRYELPSQ-G-L--------LHKRP 236 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~--------~~-------~~~~~~vvdid~s~~~~a~a~~~~~~-~-~--------~~~~~ 236 (343)
..+|+|+|||+|..+..++. .+ +...+...|+....-..-+. .+... . . ...+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~-~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQ-LLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHH-HSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHh-hhhhhhhhcchhhhccccCCCc
Confidence 47899999999999998833 22 22333444544433222211 11110 0 0 00012
Q ss_pred EEEecccCCc-CCCCCCCceeEEEEccccccCCch------------------------------------HHHHHHHHH
Q 019282 237 IIVRGEDMDF-TKFGSGVVYDLIYASAVFLHMPDK------------------------------------LVWVGLERL 279 (343)
Q Consensus 237 ~~~~~~~~dl-~~~~~~~~fDlIvs~~v~~hl~~~------------------------------------~~~~~L~~l 279 (343)
.++.+....| ....++++||+|+++.++||+.+. +...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333222222 112257899999999999998621 334578899
Q ss_pred HhccCCCCcEEEEEec----c-------------cc----------------------c-cC--CCHHHHHHHHH-hcCC
Q 019282 280 ASKLRPYDGRIFVSHN----I-------------KF----------------------C-SR--LGGEECTKRLT-SLGL 316 (343)
Q Consensus 280 ~r~LkP~GG~lvi~~~----~-------------~~----------------------~-~~--~~~~~l~~~L~-~aGf 316 (343)
++.|+| ||+++++.. . +. . .. .+.++++..++ ..||
T Consensus 212 a~eL~p-GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F 290 (374)
T 3b5i_A 212 AAEVKR-GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSF 290 (374)
T ss_dssp HHHEEE-EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSE
T ss_pred HHHhCC-CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCc
Confidence 999999 999998721 0 00 0 01 12889999998 5899
Q ss_pred cEEEeeecc
Q 019282 317 EYIGKKTHD 325 (343)
Q Consensus 317 ~~v~~~~~~ 325 (343)
++...+.+.
T Consensus 291 ~I~~le~~~ 299 (374)
T 3b5i_A 291 AIDKLVVYK 299 (374)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 988776543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-06 Score=82.72 Aligned_cols=102 Identities=15% Similarity=0.036 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-C---------------CCCCCCcEEEecccC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-Q---------------GLLHKRPIIVRGEDM 244 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~---------------~~~~~~~~~~~~~~~ 244 (343)
++.+|||+|||+|..++.++...+...++++|+++.....+.. +.+ . +. . .+.++.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~--N~~~n~~~~~~~~~~~~~~~gl-~-~i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKR--NVMLNFDGELRESKGRAILKGE-K-TIVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHH--HHHHHCCSCCEECSSEEEEESS-S-EEEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH--HHHHhcccccccccccccccCC-C-ceEEEcCcHH
Confidence 6789999999999999999987665567777777766555533 322 1 22 1 2556665443
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++... ..+.||+|+..- +. .. ..+++.+.+.||| ||.++++.
T Consensus 123 ~~~~~-~~~~fD~I~lDP-~~---~~--~~~l~~a~~~lk~-gG~l~vt~ 164 (378)
T 2dul_A 123 RLMAE-RHRYFHFIDLDP-FG---SP--MEFLDTALRSAKR-RGILGVTA 164 (378)
T ss_dssp HHHHH-STTCEEEEEECC-SS---CC--HHHHHHHHHHEEE-EEEEEEEE
T ss_pred HHHHh-ccCCCCEEEeCC-CC---CH--HHHHHHHHHhcCC-CCEEEEEe
Confidence 33211 135799999643 21 11 2378999999999 99988874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=5e-06 Score=75.72 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=51.1
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
....+.+.+.+.+.+.++.+|||||||+|.++..+++. +.. .++++|.+..+.+.+++. ...++.++.++..
T Consensus 15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~--~v~avEid~~~~~~~~~~-----~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLK--KLYVIELDREMVENLKSI-----GDERLEVINEDAS 86 (249)
T ss_dssp ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCS--EEEEECCCHHHHHHHTTS-----CCTTEEEECSCTT
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCC--eEEEEECCHHHHHHHHhc-----cCCCeEEEEcchh
Confidence 34567788888888888999999999999999999874 223 455555555666655543 1235677776444
Q ss_pred Cc
Q 019282 245 DF 246 (343)
Q Consensus 245 dl 246 (343)
.+
T Consensus 87 ~~ 88 (249)
T 3ftd_A 87 KF 88 (249)
T ss_dssp TC
T ss_pred hC
Confidence 43
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.4e-07 Score=83.99 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=53.7
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhH-----HHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELS-----LMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~-----~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
+.....+.++.+|||+|||+|..+..++.. ...++++|+++.. .+.+.++++.+.+...+++.++.++..++.
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l 152 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM 152 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH
Confidence 333345566789999999999999999984 2345555555500 344444433221111224777776544432
Q ss_pred CCCCC--CceeEEEEccccccC
Q 019282 248 KFGSG--VVYDLIYASAVFLHM 267 (343)
Q Consensus 248 ~~~~~--~~fDlIvs~~v~~hl 267 (343)
....+ ++||+|++..++++.
T Consensus 153 ~~~~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 153 PALVKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHHHHCCCSEEEECCCC---
T ss_pred HhhhccCCCccEEEECCCCCCc
Confidence 11112 589999999888664
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-06 Score=84.21 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCC-cEEEecccCCcCC-CCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKR-PIIVRGEDMDFTK-FGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~-~~~~~~~~~dl~~-~~~~~~fDl 257 (343)
.++.+|||++||+|.+++.++.....+ -.++.+|.++...+.++++.+.+...++ +.++.++..++.. . ..+.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga-~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~-~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCV-EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE-WGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCE-EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC-CSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh-hCCCCcE
Confidence 467899999999999999999864321 2345555555555555554443222323 6677665544431 1 2457999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
|++.- + .... .+++.+.+.|+| ||.++++.
T Consensus 129 V~lDP-~---g~~~--~~l~~a~~~Lk~-gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP-F---GTPV--PFIESVALSMKR-GGILSLTA 158 (392)
T ss_dssp EEECC-S---SCCH--HHHHHHHHHEEE-EEEEEEEE
T ss_pred EEECC-C---cCHH--HHHHHHHHHhCC-CCEEEEEe
Confidence 99875 2 1111 278899999999 99998875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.5e-06 Score=86.30 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcC--CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLN--PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~--~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+..|||||||+|-+....+++.. ...+.+..++.++... .+++..+ .+. .+.+.++.++..++ ...++.|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~-~dkVtVI~gd~eev---~LPEKVDI 431 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEW-GSQVTVVSSDMREW---VAPEKADI 431 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTT-GGGEEEEESCTTTC---CCSSCEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccC-CCeEEEEeCcceec---cCCcccCE
Confidence 345799999999999555444332 2334455555555332 2333333 344 44788888854444 44579999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIF 291 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lv 291 (343)
||+=.+=..+-.+...++|....|.||| ||.++
T Consensus 432 IVSEwMG~fLl~E~mlevL~Ardr~LKP-gGimi 464 (637)
T 4gqb_A 432 IVSELLGSFADNELSPECLDGAQHFLKD-DGVSI 464 (637)
T ss_dssp EECCCCBTTBGGGCHHHHHHHHGGGEEE-EEEEE
T ss_pred EEEEcCcccccccCCHHHHHHHHHhcCC-CcEEc
Confidence 9984332222222334578888999999 99885
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-06 Score=85.08 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC---------------CCceEEEEcChhHHHHHHHHhccc-CC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN---------------PENFHCLERDELSLMAAFRYELPS-QG 230 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~---------------~~~~~vvdid~s~~~~a~a~~~~~-~~ 230 (343)
+.+.+.+.+.+...++ +|||.+||+|.+...+++.+. ...++++++++.....+ +.+.. .+
T Consensus 231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA--~~Nl~l~g 307 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA--AMNMVIRG 307 (544)
T ss_dssp HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH--HHHHHHTT
T ss_pred HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH--HHHHHHhC
Confidence 5566777766666555 999999999999988766442 22344555555444444 43222 33
Q ss_pred CCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-------------------------CCch--HHHHHHHHHHhcc
Q 019282 231 LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-------------------------MPDK--LVWVGLERLASKL 283 (343)
Q Consensus 231 ~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-------------------------l~~~--~~~~~L~~l~r~L 283 (343)
... .+.+..++....+.. ....||+|+++--+.. ++.. ....+++.+.+.|
T Consensus 308 i~~-~i~i~~gDtL~~~~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~L 385 (544)
T 3khk_A 308 IDF-NFGKKNADSFLDDQH-PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHL 385 (544)
T ss_dssp CCC-BCCSSSCCTTTSCSC-TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTE
T ss_pred CCc-ccceeccchhcCccc-ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHh
Confidence 322 221133322222211 3568999999865542 1110 1114899999999
Q ss_pred CCCCcEEEEEeccccccCC--CHHHHHHHHHhcCC
Q 019282 284 RPYDGRIFVSHNIKFCSRL--GGEECTKRLTSLGL 316 (343)
Q Consensus 284 kP~GG~lvi~~~~~~~~~~--~~~~l~~~L~~aGf 316 (343)
+| ||++.+..+..+...- ....+++.|.+.+.
T Consensus 386 k~-gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 386 AP-TGSMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp EE-EEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred cc-CceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 99 9998776543443332 36788888877775
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-06 Score=81.58 Aligned_cols=89 Identities=9% Similarity=-0.094 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
++.+.+.+.+.++.+|||+|||+|..+..+++.++...++++|+|+. +.+.++++..... .++.++.++..++...
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~--al~~A~~~~~~~g--~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE--VLRIAEEKLKEFS--DRVSLFKVSYREADFL 90 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHTGGGT--TTEEEEECCGGGHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHhcC--CcEEEEECCHHHHHHH
Confidence 34444455778889999999999999999999876455555555554 4444444333211 3677777644333211
Q ss_pred CC---CCceeEEEEcc
Q 019282 250 GS---GVVYDLIYASA 262 (343)
Q Consensus 250 ~~---~~~fDlIvs~~ 262 (343)
.. .++||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 01 15799999854
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.2e-06 Score=77.10 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=78.0
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCC-C
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGS-G 252 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~-~ 252 (343)
.+.+.++.+|||+|||+|..+.+++.... ...++++|++....... +++.+ .+. .++.++.++..++..... .
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~--~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~ 172 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASM--ATLLARAGV--SCCELAEEDFLAVSPSDPRY 172 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHH--HHHHHHTTC--CSEEEEECCGGGSCTTCGGG
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHH--HHHHHHcCC--CeEEEEeCChHhcCcccccc
Confidence 35788899999999999999999998764 34566666666554444 33322 343 246666664444432111 1
Q ss_pred CceeEEEEc------cccccCCch----------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH
Q 019282 253 VVYDLIYAS------AVFLHMPDK----------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR 310 (343)
Q Consensus 253 ~~fDlIvs~------~v~~hl~~~----------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~ 310 (343)
+.||.|++. .++..-++. ....+|+.+.+++ + ||+++.+.-. ....-..+.+...
T Consensus 173 ~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-~-gG~lvYsTCs-~~~~Ene~~v~~~ 249 (309)
T 2b9e_A 173 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP-S-LQRLVYSTCS-LCQEENEDVVRDA 249 (309)
T ss_dssp TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT-T-CCEEEEEESC-CCGGGTHHHHHHH
T ss_pred CCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc-C-CCEEEEECCC-CChHHhHHHHHHH
Confidence 479999973 222221111 1123677777777 5 8888765310 1111125566677
Q ss_pred HHhc-C-CcEE
Q 019282 311 LTSL-G-LEYI 319 (343)
Q Consensus 311 L~~a-G-f~~v 319 (343)
|++. + |+.+
T Consensus 250 l~~~~~~~~~~ 260 (309)
T 2b9e_A 250 LQQNPGAFRLA 260 (309)
T ss_dssp HTTSTTTEEEC
T ss_pred HHhCCCcEEEe
Confidence 7665 4 6654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=74.70 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=87.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CC-CCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QG-LLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~-~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+...+||=||.|.|..+..++++.+...+++++||+.-...+.. -+.. .+ ..+.++.++.++...+..- ..++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~-~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQ-YLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHH-HCHHHHTTGGGCTTEEEEESCTTTTTSC-SSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHh-cCccccccccCCCcEEEEechHHHHHhh-ccccCC
Confidence 34579999999999999999987777789999999866655532 1211 12 3345777777766666533 467899
Q ss_pred EEEEccccccCCch--HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAVFLHMPDK--LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v~~hl~~~--~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+|+.-..-..-+.. ....+++.++++|+| ||+++......+...-....+.+.+.+. |..+.
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p-~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~ 223 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNP-GGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVG 223 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEE-EEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCC-CCEEEEecCCcccChHHHHHHHHHHHhh-CCcee
Confidence 99975322111110 112489999999999 9999886543333221123344455554 55544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-05 Score=73.92 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=84.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHHc---------------CCCceEEEEcChh-----------HHHHHHHHhcccCCCCCCC
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYL---------------NPENFHCLERDEL-----------SLMAAFRYELPSQGLLHKR 235 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~---------------~~~~~~vvdid~s-----------~~~~a~a~~~~~~~~~~~~ 235 (343)
..+|+|+||++|..+..+.... +...+.++--|.. +......++ ..+... .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~--~~g~~~-~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK--ENGRKI-G 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH--HTCCCT-T
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh--hccCCC-C
Confidence 5789999999999999887751 0123444444433 111111111 111111 3
Q ss_pred cEEEecccCCcC-CCCCCCceeEEEEccccccCCchH-------------------------------------HHHHHH
Q 019282 236 PIIVRGEDMDFT-KFGSGVVYDLIYASAVFLHMPDKL-------------------------------------VWVGLE 277 (343)
Q Consensus 236 ~~~~~~~~~dl~-~~~~~~~fDlIvs~~v~~hl~~~~-------------------------------------~~~~L~ 277 (343)
..++.+....|- ...+++++|+|+++.++||+.+.. ...+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555333432 123578999999999999985431 112367
Q ss_pred HHHhccCCCCcEEEEEe----cc--c---------------------------cc-cC--CCHHHHHHHHHhcC-CcEEE
Q 019282 278 RLASKLRPYDGRIFVSH----NI--K---------------------------FC-SR--LGGEECTKRLTSLG-LEYIG 320 (343)
Q Consensus 278 ~l~r~LkP~GG~lvi~~----~~--~---------------------------~~-~~--~~~~~l~~~L~~aG-f~~v~ 320 (343)
..++.|+| ||+++++. .. + +. .. ...++++..+++.| |++..
T Consensus 210 ~Ra~eL~p-GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 210 IHSEELIS-RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHEEE-EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhcc-CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 77999999 99999873 11 1 00 11 12899999999985 88877
Q ss_pred eeecc
Q 019282 321 KKTHD 325 (343)
Q Consensus 321 ~~~~~ 325 (343)
.+.+.
T Consensus 289 le~~~ 293 (384)
T 2efj_A 289 LETFN 293 (384)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.6e-06 Score=76.73 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=52.0
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC--CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP--ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE 242 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~--~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~ 242 (343)
....+.+.+.+.+.+.++.+|||||||+|.++..+++.... ..++++|+|+.....+ ++.. ..++.++.++
T Consensus 26 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a--~~~~-----~~~v~~i~~D 98 (279)
T 3uzu_A 26 VDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRL--EQRF-----GELLELHAGD 98 (279)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHH--HHHH-----GGGEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHH--HHhc-----CCCcEEEECC
Confidence 34557777888888889999999999999999999986532 2367777776555444 4321 2256677765
Q ss_pred cCCc
Q 019282 243 DMDF 246 (343)
Q Consensus 243 ~~dl 246 (343)
..++
T Consensus 99 ~~~~ 102 (279)
T 3uzu_A 99 ALTF 102 (279)
T ss_dssp GGGC
T ss_pred hhcC
Confidence 4443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-06 Score=76.94 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.++..|.+...++++.+|||+|||+|.++..++...+...+.++++........ ..... ....+..+.. ..++.
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p----i~~~~-~g~~ii~~~~-~~dv~ 150 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP----IMRTT-LGWNLIRFKD-KTDVF 150 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC----CCCCB-TTGGGEEEEC-SCCGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc----ccccc-CCCceEEeeC-Ccchh
Confidence 355555566688899999999999999999888644333444444433210000 00000 1112222221 22443
Q ss_pred CCCCCCceeEEEEccccccCCchHHH-----HHHHHHHhccCCCC--cEEEEEe
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVW-----VGLERLASKLRPYD--GRIFVSH 294 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~-----~~L~~l~r~LkP~G--G~lvi~~ 294 (343)
.+ ..+++|+|+|..+.. .+....+ .+|+-+.++|+| | |.|++-.
T Consensus 151 ~l-~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~-g~~G~Fv~Kv 201 (282)
T 3gcz_A 151 NM-EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE-GNYTEFCIKV 201 (282)
T ss_dssp GS-CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEE
T ss_pred hc-CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC-CCCCcEEEEE
Confidence 33 357899999987776 5443222 356677899999 9 9998854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=81.63 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=80.3
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHc----------------------------------------
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYL---------------------------------------- 203 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~---------------------------------------- 203 (343)
++.+.+...+......+++..|||.+||+|.+++.++...
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 4566777778877788888999999999999999887642
Q ss_pred --CCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEcccccc-CC-chHHHHH---
Q 019282 204 --NPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLH-MP-DKLVWVG--- 275 (343)
Q Consensus 204 --~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~h-l~-~~~~~~~--- 275 (343)
....++++|+|+.....+. .+.. .|+. ..+.+..++..++......+.||+|+++--+.. +. ......+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~--~N~~~agv~-~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~ 329 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRAR--TNARLAGIG-ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSL 329 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHH--HHHHHTTCG-GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHH--HHHHHcCCC-CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence 1135677777776665554 3333 4443 256777765555432212338999999866532 22 2222223
Q ss_pred HHHHHhccCCCCcEEEEE
Q 019282 276 LERLASKLRPYDGRIFVS 293 (343)
Q Consensus 276 L~~l~r~LkP~GG~lvi~ 293 (343)
+.++.+.+.| ||.+++.
T Consensus 330 l~~~lk~~~~-g~~~~il 346 (703)
T 3v97_A 330 LGRIMKNQFG-GWNLSLF 346 (703)
T ss_dssp HHHHHHHHCT-TCEEEEE
T ss_pred HHHHHHhhCC-CCeEEEE
Confidence 4455566679 9998775
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.05 E-value=6.5e-06 Score=75.15 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+.+.+.+.+.+.++.+|||||||+|.++. +.. .....++++|+|+ .+.+.+++.... ..++.++.++..++
T Consensus 7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~--~~~~~a~~~~~~---~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDR--DLAARLQTHPFL---GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCH--HHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCH--HHHHHHHHHhcc---CCceEEEECchhhC
Confidence 3466777777788889999999999999999 654 2211155555555 555555543321 12566676644433
Q ss_pred CCCCC----CCceeEEEEccccccCCch
Q 019282 247 TKFGS----GVVYDLIYASAVFLHMPDK 270 (343)
Q Consensus 247 ~~~~~----~~~fDlIvs~~v~~hl~~~ 270 (343)
. +.. .+..|.|+++..+ +++.+
T Consensus 80 ~-~~~~~~~~~~~~~vvsNlPY-~i~~~ 105 (252)
T 1qyr_A 80 N-FGELAEKMGQPLRVFGNLPY-NISTP 105 (252)
T ss_dssp C-HHHHHHHHTSCEEEEEECCT-TTHHH
T ss_pred C-HHHhhcccCCceEEEECCCC-CccHH
Confidence 2 110 0134677776554 45444
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.4e-05 Score=79.05 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcC---CCceEEEEcChhHHHHHHHHhcccC-CCCC--CCcEEEecccCCcCC--CC
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLN---PENFHCLERDELSLMAAFRYELPSQ-GLLH--KRPIIVRGEDMDFTK--FG 250 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~---~~~~~vvdid~s~~~~a~a~~~~~~-~~~~--~~~~~~~~~~~dl~~--~~ 250 (343)
.+++.+|||.|||+|.++..+++.++ ...++++|+++.....+..+..... +... ....+. + .++.. ..
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~-~--dD~L~~~~~ 395 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTIT-G--EDVCSLNPE 395 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEE-C--CCGGGCCGG
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEE-e--cchhccccc
Confidence 45678999999999999999988764 3467788888876665522221111 1111 111222 2 23322 11
Q ss_pred CCCceeEEEEcccccc-CCch--------------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCC
Q 019282 251 SGVVYDLIYASAVFLH-MPDK--------------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~h-l~~~--------------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343)
..+.||+|+++--+.. .... ....+++.+.+.|+| ||++.+..+..+...-+
T Consensus 396 ~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp-GGrLAfIlP~s~Lf~sg 474 (878)
T 3s1s_A 396 DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD-GTVISAIMPKQYLTAQG 474 (878)
T ss_dssp GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT-TCEEEEEEETHHHHCCS
T ss_pred ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC-CcEEEEEEChHHhccCC
Confidence 3468999999866621 1110 122368889999999 99998776555553323
Q ss_pred --HHHHHHHHHhcC
Q 019282 304 --GEECTKRLTSLG 315 (343)
Q Consensus 304 --~~~l~~~L~~aG 315 (343)
...+++.|.+.+
T Consensus 475 ~~~kkLRk~LLe~~ 488 (878)
T 3s1s_A 475 NESKAFREFLVGNF 488 (878)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHhCC
Confidence 567777775543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-05 Score=76.39 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred HHHHHHHHhcC----CCCCCeEEEEcCCcCHHHHHHHHHcC---CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEe
Q 019282 168 DVFEFLAEASH----ITPNSHVLEIGCGTLRVGVHFIRYLN---PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVR 240 (343)
Q Consensus 168 ~~~~~l~~~~~----l~~~~rVLDIGCGtG~~a~~la~~~~---~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~ 240 (343)
.+.+.+.+.+. ..++.+|||.+||+|.+...+++.+. ...++++++++.....+..+- ...+.......+..
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl-~l~gi~~~~~~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNM-ILHGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHH-HHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHH-HHcCCCcCccceEe
Confidence 34444444433 34678999999999999999888753 356778888777666664432 22333222345565
Q ss_pred cccCCc--CCCCCCCceeEEEEcccccc-------------------CCc--hHHHHHHHHHHhccC-CCCcEEEEEecc
Q 019282 241 GEDMDF--TKFGSGVVYDLIYASAVFLH-------------------MPD--KLVWVGLERLASKLR-PYDGRIFVSHNI 296 (343)
Q Consensus 241 ~~~~dl--~~~~~~~~fDlIvs~~v~~h-------------------l~~--~~~~~~L~~l~r~Lk-P~GG~lvi~~~~ 296 (343)
++.... +.. ....||+|+++--+.. ++. .....++..+.+.|+ | ||++.+..+.
T Consensus 283 gDtL~~d~p~~-~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~-gGr~a~VlP~ 360 (542)
T 3lkd_A 283 ADTLDEDWPTQ-EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD-NGVMAIVLPH 360 (542)
T ss_dssp SCTTTSCSCCS-SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT-TCEEEEEEET
T ss_pred cceeccccccc-ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC-ceeEEEEecc
Confidence 543332 211 3568999999744421 100 001237999999999 9 9999776544
Q ss_pred ccccCCC-HHHHHHHHHhcCC
Q 019282 297 KFCSRLG-GEECTKRLTSLGL 316 (343)
Q Consensus 297 ~~~~~~~-~~~l~~~L~~aGf 316 (343)
.+...-+ ...+++.|.+.+.
T Consensus 361 g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 361 GVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp HHHHCCTHHHHHHHHHHHTTC
T ss_pred hHhhCCchhHHHHHHHHhCCc
Confidence 4432223 5778888877765
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.2e-06 Score=84.35 Aligned_cols=109 Identities=10% Similarity=0.039 Sum_probs=64.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcC--C---------CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC-
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLN--P---------ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF- 249 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~--~---------~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~- 249 (343)
+..|||||||+|.+....+++.. + ....++.++.++......+.....+. .+.+.++.++..++.-.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~-~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTW-KRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTT-TTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCC-CCeEEEEeCchhhccccc
Confidence 45799999999999754333221 0 22345555555433322222223344 34788888865555410
Q ss_pred --CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 250 --GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 250 --~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
...++.|+|++-.+=.....+.....|..+.+.||| ||.++=
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-~Gi~iP 532 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-TTISIP 532 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT-TCEEES
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC-CcEEEC
Confidence 014689999996553333333334477788899999 998763
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.90 E-value=4e-05 Score=67.63 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCC-CCCcEEEecccCCc-----------
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLL-HKRPIIVRGEDMDF----------- 246 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~-~~~~~~~~~~~~dl----------- 246 (343)
.+..+||||||| .-+..+++. ....++.++.|+ ...+.+++..+ .+.. ..++.++.++..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~--~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~ 103 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDR--AWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAK 103 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCH--HHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTT
T ss_pred hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCH--HHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchh
Confidence 356799999985 677777773 234555555555 44444444333 4430 33666776654332
Q ss_pred ----CC-------CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 247 ----TK-------FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 247 ----~~-------~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
+. ....++||+|+.-.-.. ...+..+.+.|+| ||++++
T Consensus 104 ~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~-GG~Iv~ 152 (202)
T 3cvo_A 104 WRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITR-PVTLLF 152 (202)
T ss_dssp GGGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSS-CEEEEE
T ss_pred hhhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCC-CeEEEE
Confidence 11 11236899999876431 2367778899999 998844
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-06 Score=77.64 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=61.1
Q ss_pred HHHHHhcCCCCC--CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH-------HhcccCCC-CCCCcEEEe
Q 019282 171 EFLAEASHITPN--SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR-------YELPSQGL-LHKRPIIVR 240 (343)
Q Consensus 171 ~~l~~~~~l~~~--~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a-------~~~~~~~~-~~~~~~~~~ 240 (343)
+.+.+.+.++++ .+|||+|||+|..+..++.. . ..++++++++ ...+.. +.....+. ...++.++.
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g-~~V~~vE~~~--~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-G-CRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-T-CCEEEEECCH--HHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-C-CEEEEEECCH--HHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 334445667777 89999999999999999985 2 3455555554 332221 11111100 112567777
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCC
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRP 285 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP 285 (343)
++..++.... .+.||+|++.-++.+-.. . ..+++..+.|++
T Consensus 152 ~D~~~~L~~~-~~~fDvV~lDP~y~~~~~-s--aavkk~~~~lr~ 192 (258)
T 2oyr_A 152 ASSLTALTDI-TPRPQVVYLDPMFPHKQK-S--ALVKKEMRVFQS 192 (258)
T ss_dssp SCHHHHSTTC-SSCCSEEEECCCCCCCCC--------HHHHHHHH
T ss_pred CCHHHHHHhC-cccCCEEEEcCCCCCccc-c--hHHHHHHHHHHH
Confidence 7655543221 247999999988866432 2 245556666665
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=8.5e-05 Score=68.82 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-CCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-GLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-~~~~~~~~~~~~~~~dl~ 247 (343)
++..+.+..-++++.+|||+||++|.++..+++..+...+.++++... +. ..... ......+.... ...++.
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~--~~----~~P~~~~~~~~~iv~~~-~~~di~ 141 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE--GH----EKPIHMQTLGWNIVKFK-DKSNVF 141 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TS----CCCCCCCBTTGGGEEEE-CSCCTT
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc--cc----cccccccccCCceEEee-cCceee
Confidence 333444444567889999999999999999987433333344444321 10 00000 00011222222 122333
Q ss_pred CCCCCCceeEEEEccccccCCchHH-----HHHHHHHHhccCCCC-cEEEEEe
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLV-----WVGLERLASKLRPYD-GRIFVSH 294 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~-----~~~L~~l~r~LkP~G-G~lvi~~ 294 (343)
.+ ..+.+|+|+|..... .+.... ..+|+-+.++|+| | |.|++-.
T Consensus 142 ~l-~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp-G~G~FV~Kv 191 (300)
T 3eld_A 142 TM-PTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV-NTENFCVKV 191 (300)
T ss_dssp TS-CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT-TCCEEEEEE
T ss_pred ec-CCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEe
Confidence 33 356899999987765 544322 2346677899999 9 9998863
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6e-05 Score=68.50 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=70.2
Q ss_pred CCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCc--eEEEEcChhHHHHHHHHhcccCCC-CCCCc-
Q 019282 161 EPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPEN--FHCLERDELSLMAAFRYELPSQGL-LHKRP- 236 (343)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~--~~vvdid~s~~~~a~a~~~~~~~~-~~~~~- 236 (343)
.+.+.+-.++..|.+..-++|+.+|||+||++|.++...++..+-.. -+++++|. . ...-... .+-+.
T Consensus 53 ~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i 124 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIV 124 (269)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGE
T ss_pred CcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEE
Confidence 33344555666677766789999999999999999998887411111 23344442 0 0000000 01012
Q ss_pred EEEecccCCcCCCCCCCceeEEEEccccccCCchHHH-----HHHHHHHhccCCCCc-EEEEE
Q 019282 237 IIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVW-----VGLERLASKLRPYDG-RIFVS 293 (343)
Q Consensus 237 ~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~-----~~L~~l~r~LkP~GG-~lvi~ 293 (343)
.+..+ .|+.+. ...++|+|+|-.... .+....+ .+|+-+.++|+| || .|++-
T Consensus 125 ~~~~G--~Df~~~-~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~-gG~~FvvK 182 (269)
T 2px2_A 125 TMKSG--VDVFYK-PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR-GPKEFCIK 182 (269)
T ss_dssp EEECS--CCGGGS-CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT-CCSEEEEE
T ss_pred Eeecc--CCccCC-CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc-CCcEEEEE
Confidence 33323 355543 245899999977664 4443322 246667799999 99 78774
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.70 E-value=9.4e-06 Score=79.12 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC---CCCCCCcEEEecccCCcCCCCCCCce
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ---GLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~---~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
+.++.+|||+|||+|..+..+++. +..++++|.++.+.+.++++... +. .++.++.++..++.....+++|
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~----g~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~Da~~~L~~~~~~~f 164 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK----ASQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGDFKEYLPLIKTFHP 164 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT----CSEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESCGGGSHHHHHHHCC
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECcHHHhhhhccCCCc
Confidence 345889999999999999988873 33455555555555555554332 33 3577777755443111013589
Q ss_pred eEEEEcc
Q 019282 256 DLIYASA 262 (343)
Q Consensus 256 DlIvs~~ 262 (343)
|+|++.-
T Consensus 165 DvV~lDP 171 (410)
T 3ll7_A 165 DYIYVDP 171 (410)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9999863
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.2e-05 Score=71.65 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHc--------------CCCceE--EEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYL--------------NPENFH--CLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~--------------~~~~~~--vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
...+|+|+||++|..+..+.... +...+. ..|+....-...+. .+.... ...+..++.+...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~-~L~~~~-~~~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFR-SLPIEN-DVDGVCFINGVPG 128 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHT-TTTTSC-SCTTCEEEEEEES
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHH-hcchhc-ccCCCEEEEecch
Confidence 34689999999998887665431 122344 44444444333322 211100 1113445554333
Q ss_pred CcC-CCCCCCceeEEEEccccccCCch-------------------------------HHHHHHHHHHhccCCCCcEEEE
Q 019282 245 DFT-KFGSGVVYDLIYASAVFLHMPDK-------------------------------LVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 245 dl~-~~~~~~~fDlIvs~~v~~hl~~~-------------------------------~~~~~L~~l~r~LkP~GG~lvi 292 (343)
.|- ...+++++|+|+++.++||+.+. ++..+|+..++.|+| ||++++
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p-GG~mvl 207 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP-GGRMVL 207 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT-TCEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEE
Confidence 432 22357899999999999998541 233468889999999 999998
Q ss_pred E
Q 019282 293 S 293 (343)
Q Consensus 293 ~ 293 (343)
+
T Consensus 208 ~ 208 (359)
T 1m6e_X 208 T 208 (359)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00031 Score=64.98 Aligned_cols=121 Identities=14% Similarity=0.065 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
+.+-.++..+.+...++++.+||||||++|.++.+.+...... .|.++|....... +-..-+.+.-+.+.+..+
T Consensus 77 SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~--~V~avdvG~~~he--~P~~~~ql~w~lV~~~~~-- 150 (321)
T 3lkz_A 77 SRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQ--EVRGYTKGGPGHE--EPQLVQSYGWNIVTMKSG-- 150 (321)
T ss_dssp STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEE--EEEEECCCSTTSC--CCCCCCBTTGGGEEEECS--
T ss_pred chHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCC--EEEEEEcCCCCcc--CcchhhhcCCcceEEEec--
Confidence 3345566667777788999999999999999999887754433 3555554221000 000000111123455544
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHH-----HHHHHHHhccCCCC-cEEEEE
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVW-----VGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~-----~~L~~l~r~LkP~G-G~lvi~ 293 (343)
.|+.... ..++|.|+|--. +--+.+..+ .+|+-+.+.|++ | |.++|-
T Consensus 151 ~Dv~~l~-~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~-~~~~f~~K 203 (321)
T 3lkz_A 151 VDVFYRP-SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR-GPREFCVK 203 (321)
T ss_dssp CCTTSSC-CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred cCHhhCC-CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc-CCCcEEEE
Confidence 3443332 367999999665 555554322 367777899999 8 877774
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00065 Score=65.06 Aligned_cols=121 Identities=10% Similarity=0.066 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+++|.++||+||++|.++..+++ .+..|+++|..++..... ...++.++.++...+. +..+.||+
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~----rg~~V~aVD~~~l~~~l~--------~~~~V~~~~~d~~~~~--~~~~~~D~ 273 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVK----RNMWVYSVDNGPMAQSLM--------DTGQVTWLREDGFKFR--PTRSNISW 273 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHH----TTCEEEEECSSCCCHHHH--------TTTCEEEECSCTTTCC--CCSSCEEE
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHH----CCCEEEEEEhhhcChhhc--------cCCCeEEEeCcccccc--CCCCCcCE
Confidence 367899999999999999999988 456788888755433222 1235677766544443 23568999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCC--CcEEEEEeccccccCC-----CHHHHHHHHHhcCCcEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPY--DGRIFVSHNIKFCSRL-----GGEECTKRLTSLGLEYI 319 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~--GG~lvi~~~~~~~~~~-----~~~~l~~~L~~aGf~~v 319 (343)
|+|-.+.. +.. .+..+.+.|... ++.+ ++-......++ ..+.+.+.++..||...
T Consensus 274 vvsDm~~~----p~~--~~~l~~~wl~~~~~~~aI-~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~ 335 (375)
T 4auk_A 274 MVCDMVEK----PAK--VAALMAQWLVNGWCRETI-FNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQ 335 (375)
T ss_dssp EEECCSSC----HHH--HHHHHHHHHHTTSCSEEE-EEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEcCCCC----hHH--hHHHHHHHHhccccceEE-EEEEecccchHHHHHHHHHHHHHHHHhcCcchh
Confidence 99976552 222 344444444440 3443 33211111111 15567778888998743
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00024 Score=65.78 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcC-----CCceEEEEcChh-----------H-------------HHHHHHHh-cccC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLN-----PENFHCLERDEL-----------S-------------LMAAFRYE-LPSQ 229 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~-----~~~~~vvdid~s-----------~-------------~~~a~a~~-~~~~ 229 (343)
....+|||+|+..|..+..++..++ ...++++|.... . ...+.+++ +.+.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3446999999999999999887652 566777775310 0 01112222 2334
Q ss_pred CCCCCCcEEEecccCCc-CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHH
Q 019282 230 GLLHKRPIIVRGEDMDF-TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEEC 307 (343)
Q Consensus 230 ~~~~~~~~~~~~~~~dl-~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l 307 (343)
++...++.++.++..+. +.. ..++||+|+.-.-. . .....+|+.+.+.|+| ||++++-. ..+ ..+ ...+
T Consensus 185 gl~~~~I~li~Gda~etL~~~-~~~~~d~vfIDaD~---y-~~~~~~Le~~~p~L~p-GGiIv~DD-~~~--~~G~~~Av 255 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTA-PIDTLAVLRMDGDL---Y-ESTWDTLTNLYPKVSV-GGYVIVDD-YMM--CPPCKDAV 255 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTC-CCCCEEEEEECCCS---H-HHHHHHHHHHGGGEEE-EEEEEESS-CTT--CHHHHHHH
T ss_pred CCCcCceEEEEeCHHHHHhhC-CCCCEEEEEEcCCc---c-ccHHHHHHHHHhhcCC-CEEEEEcC-CCC--CHHHHHHH
Confidence 55435788888855443 322 35689999886531 1 1233589999999999 88776542 221 011 5667
Q ss_pred HHHHHhcCCcE
Q 019282 308 TKRLTSLGLEY 318 (343)
Q Consensus 308 ~~~L~~aGf~~ 318 (343)
.+.+++.|.+.
T Consensus 256 ~Ef~~~~~i~~ 266 (282)
T 2wk1_A 256 DEYRAKFDIAD 266 (282)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHhcCCce
Confidence 77788888653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00055 Score=68.88 Aligned_cols=145 Identities=21% Similarity=0.190 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-------------CCceEEEEcChhHHHHHHHHhcccCCCCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-------------PENFHCLERDELSLMAAFRYELPSQGLLH 233 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-------------~~~~~vvdid~s~~~~a~a~~~~~~~~~~ 233 (343)
+.+.+.+.+.+...++.+|+|-+||+|.+.....+++. ...+++.++++.....+..+-.. .+..
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l-hg~~- 280 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL-HGLE- 280 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH-HTCS-
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh-cCCc-
Confidence 56777788778888889999999999999988776542 24577888887776666443221 2332
Q ss_pred CCcEEEecccCCcC--CCCCCCceeEEEEccccccCCc--------------hHHHHHHHHHHhccC-------CCCcEE
Q 019282 234 KRPIIVRGEDMDFT--KFGSGVVYDLIYASAVFLHMPD--------------KLVWVGLERLASKLR-------PYDGRI 290 (343)
Q Consensus 234 ~~~~~~~~~~~dl~--~~~~~~~fDlIvs~~v~~hl~~--------------~~~~~~L~~l~r~Lk-------P~GG~l 290 (343)
...+..++....+ +......||+|+++--|.--.. .....++..+.+.|| | ||++
T Consensus 281 -~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~-gGr~ 358 (530)
T 3ufb_A 281 -YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN-GGRA 358 (530)
T ss_dssp -CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS-CCEE
T ss_pred -cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC-CceE
Confidence 2233433332221 1112457999999866631111 112236777777775 8 9998
Q ss_pred EEEeccccccCCC-HHHHHHHHHhcC
Q 019282 291 FVSHNIKFCSRLG-GEECTKRLTSLG 315 (343)
Q Consensus 291 vi~~~~~~~~~~~-~~~l~~~L~~aG 315 (343)
.+..+..+...-+ ...+++.|-+.+
T Consensus 359 avVlP~g~Lf~~~~~~~iRk~Lle~~ 384 (530)
T 3ufb_A 359 AVVVPNGTLFSDGISARIKEELLKNF 384 (530)
T ss_dssp EEEEEHHHHHCCTHHHHHHHHHHHHS
T ss_pred EEEecchhhhccchHHHHHHHHhhcC
Confidence 7764433322222 456777776554
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00083 Score=62.78 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHH----HcCCCceEEEEcChhHH-------------HHHHHHhcccCCCCCCCc--EEEec
Q 019282 181 PNSHVLEIGCGTLRVGVHFIR----YLNPENFHCLERDELSL-------------MAAFRYELPSQGLLHKRP--IIVRG 241 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~----~~~~~~~~vvdid~s~~-------------~~a~a~~~~~~~~~~~~~--~~~~~ 241 (343)
+.-+|||+|-|||........ .-+...++.+.++..++ .......... ....++ .+..+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~--~~~~~v~L~l~~G 173 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE--YEGERLSLKVLLG 173 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE--EECSSEEEEEEES
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc--ccCCcEEEEEEec
Confidence 346899999999997654433 22445566666653211 1111111111 111122 23334
Q ss_pred ccCC-cCCCCCCCceeEEEEcc-ccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 242 EDMD-FTKFGSGVVYDLIYASA-VFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 242 ~~~d-l~~~~~~~~fDlIvs~~-v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
++.+ ++++ .+..||+|+.-. ....-|+-....+|+.++++++| ||++.- . + ....++..|+++||++.
T Consensus 174 Da~~~l~~l-~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p-gg~laT-Y----t---aag~VRR~L~~aGF~V~ 243 (308)
T 3vyw_A 174 DARKRIKEV-ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE-KGYWVS-Y----S---SSLSVRKSLLTLGFKVG 243 (308)
T ss_dssp CHHHHGGGC-CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE-EEEEEE-S----C---CCHHHHHHHHHTTCEEE
T ss_pred hHHHHHhhh-cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC-CcEEEE-E----e---CcHHHHHHHHHCCCEEE
Confidence 3322 2333 244799999854 23233444445799999999999 998752 1 1 14568889999999987
Q ss_pred Eeee
Q 019282 320 GKKT 323 (343)
Q Consensus 320 ~~~~ 323 (343)
+...
T Consensus 244 k~~G 247 (308)
T 3vyw_A 244 SSRE 247 (308)
T ss_dssp EEEC
T ss_pred ecCC
Confidence 7654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0024 Score=57.29 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=70.3
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
.+-.++..+.+...++++.+|||+||++|.++.+.+....... |.++|........-+ .-+.+--+.+.+..+ .
T Consensus 62 Ra~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~--V~avdvG~~ghe~P~--~~~s~gwn~v~fk~g--v 135 (267)
T 3p8z_A 62 RGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTE--VRGYTKGGPGHEEPV--PMSTYGWNIVKLMSG--K 135 (267)
T ss_dssp THHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEE--EEEECCCSTTSCCCC--CCCCTTTTSEEEECS--C
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCE--EEEEecCCCCccCcc--hhhhcCcCceEEEec--c
Confidence 3445666677777889999999999999999998887554443 455554221111000 001111235566655 3
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHH-----HHHHHHHHhccCCCCcEEEEE
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLV-----WVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~-----~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+... ...++|.|+|...- --+.+.. ..+|+-+.+.|++ |.++|-
T Consensus 136 Dv~~~-~~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~--~~fc~K 185 (267)
T 3p8z_A 136 DVFYL-PPEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN--NQFCIK 185 (267)
T ss_dssp CGGGC-CCCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS--CEEEEE
T ss_pred ceeec-CCccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc--CCEEEE
Confidence 43322 23679999996555 3343321 2367777899998 566553
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00061 Score=56.78 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcC-HHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTL-RVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG-~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
-+.+.++|.+. ..++.+|||||||.| +.+..|++..+ ..+.++|+++.... ++.+
T Consensus 22 ~e~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~------------------~v~d--- 77 (153)
T 2k4m_A 22 WNDLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGG------------------IVRD--- 77 (153)
T ss_dssp HHHHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTT------------------EECC---
T ss_pred HHHHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccc------------------eEEc---
Confidence 45567777654 345679999999999 79999986421 23445555441111 3333
Q ss_pred CcCCCCCC--CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 245 DFTKFGSG--VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 245 dl~~~~~~--~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+-+...+ +.||+|++..-... .+..+.++.+... .-++|.
T Consensus 78 DiF~P~~~~Y~~~DLIYsirPP~E-----l~~~i~~lA~~v~---adliI~ 120 (153)
T 2k4m_A 78 DITSPRMEIYRGAALIYSIRPPAE-----IHSSLMRVADAVG---ARLIIK 120 (153)
T ss_dssp CSSSCCHHHHTTEEEEEEESCCTT-----THHHHHHHHHHHT---CEEEEE
T ss_pred cCCCCcccccCCcCEEEEcCCCHH-----HHHHHHHHHHHcC---CCEEEE
Confidence 33222111 48999998764433 3335556666554 445554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00084 Score=64.51 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCC----CCCcEEEecccCCcCC-C-CC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLL----HKRPIIVRGEDMDFTK-F-GS 251 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~----~~~~~~~~~~~~dl~~-~-~~ 251 (343)
.+..+||=||.|.|..+..++++. ...+++++||+.-...+... +.. .+.. ..++.++.+++..+.. . ..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~y-fp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKY-MRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHH-CCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhh-chhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 345799999999999999999854 46788999988665555321 111 1111 1234455443333321 0 12
Q ss_pred CCceeEEEEccccc-------cCC-chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcC
Q 019282 252 GVVYDLIYASAVFL-------HMP-DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLG 315 (343)
Q Consensus 252 ~~~fDlIvs~~v~~-------hl~-~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aG 315 (343)
.+.||+|+.-..-. ... ......+++.+++.|+| ||+++......+... ....+.+.+++..
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p-~GVlv~Q~~s~~~~~-~~~~i~~tl~~vF 351 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ-DGKYFTQGNCVNLTE-ALSLYEEQLGRLY 351 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE-EEEEEEEEEETTCHH-HHHHHHHHHTTSS
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC-CCEEEEecCCCcchh-HHHHHHHHHHHhC
Confidence 45799999753211 111 11234578999999999 999987543222210 1344556666653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00067 Score=62.62 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~ 249 (343)
.+.+.+.+.++++..+||.+||.|+.+..+++. ...++++|.|+ ...+.+++ ... .++.++.++-.++..+
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp--~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~ 81 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDP--EAVARAKG-LHL----PGLTVVQGNFRHLKRH 81 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCH--HHHHHHHH-TCC----TTEEEEESCGGGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCH--HHHHHHHh-hcc----CCEEEEECCcchHHHH
Confidence 344444567888999999999999999999985 33445555555 55554554 322 3677777644443221
Q ss_pred C---CCCceeEEEEc
Q 019282 250 G---SGVVYDLIYAS 261 (343)
Q Consensus 250 ~---~~~~fDlIvs~ 261 (343)
. ..+++|.|++.
T Consensus 82 L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 82 LAALGVERVDGILAD 96 (285)
T ss_dssp HHHTTCSCEEEEEEE
T ss_pred HHHcCCCCcCEEEeC
Confidence 1 12579999974
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=60.88 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=68.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC----CCCCcEEEecccCCcCCCCC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL----LHKRPIIVRGEDMDFTKFGS 251 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~----~~~~~~~~~~~~~dl~~~~~ 251 (343)
++..+|.+|||+.+|.|.=+.+++.......+++.|++....... +++.. .+. ...++.....+...+... .
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l--~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~-~ 220 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARL--QKILHSYVPEEIRDGNQVRVTSWDGRKWGEL-E 220 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHH--HHHHHHHSCTTTTTSSSEEEECCCGGGHHHH-S
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHH--HHHHHHhhhhhhccCCceEEEeCchhhcchh-c
Confidence 688999999999999999999999865544566666665543322 22111 111 112344443332222222 3
Q ss_pred CCceeEEEEc----c----ccccCCc-------h-------HHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYAS----A----VFLHMPD-------K-------LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~----~----v~~hl~~-------~-------~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.||.|+.- . ++..-++ . ....+|....+.||| ||+|+.+
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp-GG~LVYs 283 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP-GGHVVYS 283 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC-CcEEEEE
Confidence 5689999963 2 1111111 0 123578889999999 9999765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0081 Score=55.60 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred HHHHHHHh-----cCCCCCCeEEEEcC------CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcE
Q 019282 169 VFEFLAEA-----SHITPNSHVLEIGC------GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPI 237 (343)
Q Consensus 169 ~~~~l~~~-----~~l~~~~rVLDIGC------GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~ 237 (343)
++..|++. +.++.+.+|||+|+ -+|.. .+.+..+ .+..++++|..+ .. .....
T Consensus 92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p-~g~~VVavDL~~--------~~-----sda~~ 155 (344)
T 3r24_A 92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLP-TGTLLVDSDLND--------FV-----SDADS 155 (344)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSC-TTCEEEEEESSC--------CB-----CSSSE
T ss_pred HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCC-CCcEEEEeeCcc--------cc-----cCCCe
Confidence 44444444 45678899999996 67763 3344333 334677777622 11 11225
Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccCCc---------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHH
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD---------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECT 308 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~---------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~ 308 (343)
+++++ +......++||+|+|-...--.+. .-....++-+.+.|+| ||.|++-.. .... .+.+.
T Consensus 156 ~IqGD---~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp-GGsFvVKVF---QGsg-~~~L~ 227 (344)
T 3r24_A 156 TLIGD---CATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAVKIT---EHSW-NADLY 227 (344)
T ss_dssp EEESC---GGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEEEEC---SSSC-CHHHH
T ss_pred EEEcc---ccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcC-CCEEEEEEe---cCCC-HHHHH
Confidence 57764 332334578999999543321111 1123366778889999 999988631 1111 23344
Q ss_pred HHHHhcCCcEEEee
Q 019282 309 KRLTSLGLEYIGKK 322 (343)
Q Consensus 309 ~~L~~aGf~~v~~~ 322 (343)
+ +.+ -|+.+...
T Consensus 228 ~-lrk-~F~~VK~f 239 (344)
T 3r24_A 228 K-LMG-HFSWWTAF 239 (344)
T ss_dssp H-HHT-TEEEEEEE
T ss_pred H-HHh-hCCeEEEE
Confidence 4 333 77766644
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0047 Score=57.14 Aligned_cols=52 Identities=17% Similarity=-0.019 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHH
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAA 221 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a 221 (343)
..+++.+.+... .++..|||++||+|.++..++.. . ..+.++++++.....+
T Consensus 222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g-~~~~g~e~~~~~~~~a 273 (297)
T 2zig_A 222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-G-RRALGVELVPRYAQLA 273 (297)
T ss_dssp HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-C-CeEEEEeCCHHHHHHH
Confidence 356666665544 67889999999999999988762 2 3455555555444444
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0026 Score=74.67 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCC-----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--CCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNP-----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--GSG 252 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~-----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~ 252 (343)
.+..+|||||.|+|..+..+.+.+.. ..++.+|++..-...+ ++.... + .+.. ...+..+. ...
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a--~~~f~~-~---di~~---~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAA--QAKLEQ-L---HVTQ---GQWDPANPAPGSL 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTT--TTTHHH-H---TEEE---ECCCSSCCCC---
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHH--HHHhhh-c---cccc---ccccccccccCCC
Confidence 46789999999999887777666532 3577777775322111 111000 0 0000 00111110 024
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------c--------ccCCCHHHHHHHHHhcC
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------F--------CSRLGGEECTKRLTSLG 315 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------~--------~~~~~~~~l~~~L~~aG 315 (343)
..||+|++..++|..++... .|.+++++||| ||++++..... + ......++|.+.|.++|
T Consensus 1310 ~~ydlvia~~vl~~t~~~~~--~l~~~~~lL~p-~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLGDPAV--AVGNMAATLKE-GGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp --CCEEEEECC-----------------------CCEEEEEEC--------------------------CTTTTSSTTTT
T ss_pred CceeEEEEcccccccccHHH--HHHHHHHhcCC-CcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCC
Confidence 57999999999976665544 89999999999 99987753110 0 01112455666778889
Q ss_pred CcEEEe
Q 019282 316 LEYIGK 321 (343)
Q Consensus 316 f~~v~~ 321 (343)
|..+..
T Consensus 1387 f~~~~~ 1392 (2512)
T 2vz8_A 1387 LHLVAL 1392 (2512)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 987654
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.03 Score=52.83 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
++.+.+.+.++++..++|..||.|..+..+++.++ ...++++|.|+..+..+ +++ ...++.++.++-.++..
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A--~rL-----~~~Rv~lv~~nF~~l~~ 118 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA--KTI-----DDPRFSIIHGPFSALGE 118 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH--TTC-----CCTTEEEEESCGGGHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH--Hhh-----cCCcEEEEeCCHHHHHH
Confidence 34455556788999999999999999999998764 44566777766554443 322 23467777764334321
Q ss_pred C----CCCCceeEEEEc
Q 019282 249 F----GSGVVYDLIYAS 261 (343)
Q Consensus 249 ~----~~~~~fDlIvs~ 261 (343)
+ ...+++|.|++.
T Consensus 119 ~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 119 YVAERDLIGKIDGILLD 135 (347)
T ss_dssp HHHHTTCTTCEEEEEEE
T ss_pred HHHhcCCCCcccEEEEC
Confidence 1 112369999875
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.044 Score=52.10 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=54.5
Q ss_pred cCCCccchHHHHHHHHHhcCCCC------CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC
Q 019282 159 YGEPWAGGRDVFEFLAEASHITP------NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL 232 (343)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~l~~------~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~ 232 (343)
||-.+=....+.+.|.+.+++.+ +..|||||.|.|.++..|++......++++++|.... ...++.. .
T Consensus 30 lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~--~~L~~~~----~ 103 (353)
T 1i4w_A 30 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY--KFLNAKF----E 103 (353)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH--HHHHHHT----T
T ss_pred CCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH--HHHHHhc----c
Confidence 44444345667777877777764 5899999999999999999865445688888887533 2222222 1
Q ss_pred CCCcEEEecccCCc
Q 019282 233 HKRPIIVRGEDMDF 246 (343)
Q Consensus 233 ~~~~~~~~~~~~dl 246 (343)
..+..++.++..++
T Consensus 104 ~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 104 GSPLQILKRDPYDW 117 (353)
T ss_dssp TSSCEEECSCTTCH
T ss_pred CCCEEEEECCccch
Confidence 23667777755443
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.1 Score=53.44 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred CCceeEEEEcccccc-CCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 252 GVVYDLIYASAVFLH-MPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 252 ~~~fDlIvs~~v~~h-l~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
...||+|+.-..-.. -|+-....+|..++++++| ||.+.... ....+++.|.++||.+....
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~-g~~~~t~~--------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP-GGTLATFT--------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE-EEEEEESC--------CCHHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC-CCEEEecc--------CcHHHHHHHHhCCeEEEecc
Confidence 357999998543222 2333345689999999999 88764321 13568889999999876543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.082 Score=54.45 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHc----------CCCceEEEEcCh---hHHHHHHHH-----------hcccCCCC----
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYL----------NPENFHCLERDE---LSLMAAFRY-----------ELPSQGLL---- 232 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~----------~~~~~~vvdid~---s~~~~a~a~-----------~~~~~~~~---- 232 (343)
+.-+|||+|.|+|...+.+.+.+ ....++.+.++. +......+- ++.. ..+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRA-QWPLPLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHH-TCCCCCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHH-hCcccCC
Confidence 44689999999999988877654 112356666554 222222111 1111 011
Q ss_pred --------CC--CcEEEecccCCc-CCCC--CCCceeEEEEccccccC-CchHHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 233 --------HK--RPIIVRGEDMDF-TKFG--SGVVYDLIYASAVFLHM-PDKLVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 233 --------~~--~~~~~~~~~~dl-~~~~--~~~~fDlIvs~~v~~hl-~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
+. ...+..++..+. +.+. ....+|.++.-..-... ++-....+|..+.++++| ||.+.-..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~-g~~~~t~~---- 211 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP-GGTFSTFT---- 211 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE-EEEEEESC----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC-CCEEEecc----
Confidence 11 122333332222 2221 14679999885432222 332334589999999999 88764321
Q ss_pred ccCCCHHHHHHHHHhcCCcEEEee
Q 019282 299 CSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
....+++.|.++||.+....
T Consensus 212 ----~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ----AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEE
T ss_pred ----CcHHHHHHHHhCCeEEEecc
Confidence 13578889999999877644
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.28 Score=46.16 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCC-------------------CCCCcEEEe
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGL-------------------LHKRPIIVR 240 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~-------------------~~~~~~~~~ 240 (343)
.+...|+.+|||.......+.... .+++++++|.......+.+.+.+.+. ...+...+.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~--~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF--PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC--TTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC--CCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 355789999999999988887643 36789999985555443333222210 012444554
Q ss_pred cccCCc-------CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 241 GEDMDF-------TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 241 ~~~~dl-------~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+-.+. ......+...++++-.++.+++......+|+.+.+.. | +|.+++.
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~-~~~~v~~ 231 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S-HGLWISY 231 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S-SEEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C-CcEEEEE
Confidence 422221 1111224678999999999999999989999999987 6 7877543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.31 Score=45.87 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=61.3
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----C
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----T 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~ 247 (343)
+.+...++++.+||-+|+|. |..+..+++......+.+++.+. ...+.++++ |. . ..+.....++ .
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~--~~~~~a~~l---Ga---~-~vi~~~~~~~~~~~~ 252 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE--SRLELAKQL---GA---T-HVINSKTQDPVAAIK 252 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHHHH---TC---S-EEEETTTSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HHHHHHHHc---CC---C-EEecCCccCHHHHHH
Confidence 43456788999999999986 88888888876543455555554 334444432 21 1 1122111121 1
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+. ..+.+|+|+-.. +.. ..++...+.|+| ||++++.
T Consensus 253 ~~-~~gg~D~vid~~-----g~~---~~~~~~~~~l~~-~G~iv~~ 288 (371)
T 1f8f_A 253 EI-TDGGVNFALEST-----GSP---EILKQGVDALGI-LGKIAVV 288 (371)
T ss_dssp HH-TTSCEEEEEECS-----CCH---HHHHHHHHTEEE-EEEEEEC
T ss_pred Hh-cCCCCcEEEECC-----CCH---HHHHHHHHHHhc-CCEEEEe
Confidence 11 123799997643 222 267889999999 9999875
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.18 E-value=0.13 Score=46.31 Aligned_cols=52 Identities=25% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHH
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAA 221 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a 221 (343)
..+++.+.+.. ..++..|||..||+|.++....+. ...+.++++++.....+
T Consensus 199 ~~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 199 RDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp HHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 34555555543 367889999999999999887762 24555666666554444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.25 Score=45.33 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=53.6
Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccCCc------------------hHHHHHHHHHHhccCCCCcEEEEEecc
Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD------------------KLVWVGLERLASKLRPYDGRIFVSHNI 296 (343)
Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~------------------~~~~~~L~~l~r~LkP~GG~lvi~~~~ 296 (343)
...++.++..+......+++||+|+++--+....+ .....+++++.++||| ||.+++..+.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~-~G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVP-GGRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEECC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCC-CcEEEEEECC
Confidence 44567775555322224679999999866532211 0123467899999999 9999988653
Q ss_pred ccccC--------CC-HHHHHHHHHhcCCcEEE
Q 019282 297 KFCSR--------LG-GEECTKRLTSLGLEYIG 320 (343)
Q Consensus 297 ~~~~~--------~~-~~~l~~~L~~aGf~~v~ 320 (343)
..... +. ...+...++++||....
T Consensus 100 ~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 100 VAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred CccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 22110 11 35677889999998765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.56 Score=44.65 Aligned_cols=105 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc-C----C
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF-T----K 248 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl-~----~ 248 (343)
+...++++.+||-+|||. |.++..+++......+.+++.+. ...+.++++ |. ..+.....++ . .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~l---Ga-----~~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP--ERLKLLSDA---GF-----ETIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHHTT---TC-----EEEETTSSSCHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHc---CC-----cEEcCCCcchHHHHHHH
Confidence 346789999999999986 88888888876543455555444 444444432 21 1222211221 1 0
Q ss_pred CCCCCceeEEEEcccccc---------CCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLH---------MPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~h---------l~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+-.-.-.. +... ..++...++|+| ||++++.
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-gG~iv~~ 298 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPN---GALNSLFDVVRA-GGAIGIP 298 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSBCTT---HHHHHHHHHEEE-EEEEECC
T ss_pred HhCCCCCCEEEECCCCccccccccccccccH---HHHHHHHHHHhc-CCEEEEe
Confidence 111236999986533221 1111 157889999999 9998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.26 Score=45.93 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=52.4
Q ss_pred CcEEEecccCCcCCCCCCCceeEEEEccccccCCc------------hHHHHHHHHHHhccCCCCcEEEEEecccccc--
Q 019282 235 RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD------------KLVWVGLERLASKLRPYDGRIFVSHNIKFCS-- 300 (343)
Q Consensus 235 ~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~-- 300 (343)
...++.++..+......+++||+|++.--+....+ ......|++++++|+| ||.+++.....+..
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~-~G~i~i~~~d~~~~g~ 92 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKP-DGSFVVDFGGAYMKGV 92 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEECCCEETTE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcC-CcEEEEEECCEecCCC
Confidence 34556665444322223678999999755532210 1234578999999999 99999986533211
Q ss_pred ----CCCHHHHHHHHHhcCCcEEE
Q 019282 301 ----RLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 301 ----~~~~~~l~~~L~~aGf~~v~ 320 (343)
.+....+.+.++..||..+.
T Consensus 93 ~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 93 PARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EEECCHHHHHHHHHHHTTCCEEEE
T ss_pred cccccchHHHHHHHHHhCCCEEEE
Confidence 11234555677899998764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.92 Score=43.05 Aligned_cols=105 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-c----CCC
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-F----TKF 249 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-l----~~~ 249 (343)
..+++++.+||-+|+|. |.++..+++......+.+++.+. ...+.++++ |. . .+.....+ + .+.
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~--~~~~~a~~l---Ga---~--~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--ARLAHAKAQ---GF---E--IADLSLDTPLHEQIAAL 249 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHHT---TC---E--EEETTSSSCHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCH--HHHHHHHHc---CC---c--EEccCCcchHHHHHHHH
Confidence 46788999999999875 77888888875543444555444 444444432 22 1 12211111 1 101
Q ss_pred CCCCceeEEEEccccc---------cCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFL---------HMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~---------hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.....+|+|+-.-.-. |.+++.. .++...++|++ ||++++.
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~-~G~iv~~ 299 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPAT--VLNSLMQVTRV-AGKIGIP 299 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTH--HHHHHHHHEEE-EEEEEEC
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHH--HHHHHHHHHhc-CCEEEEe
Confidence 1123699998643321 1222222 68889999999 9998764
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.51 Score=43.75 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=59.5
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--C
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--S 251 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~ 251 (343)
+...++++.+||-+|+|. |..+..+++... ..++.++.+....+.++++. . . ..+.....++.+.. .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~lG---a---~-~~i~~~~~~~~~~~~~~ 229 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG---LRVAAVDIDDAKLNLARRLG---A---E-VAVNARDTDPAAWLQKE 229 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTT---C---S-EEEETTTSCHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHcC---C---C-EEEeCCCcCHHHHHHHh
Confidence 345788999999999975 888888888654 34555544444455444432 1 1 12222112211000 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.+|+|+-... .. ..++.+.++|+| ||++++.
T Consensus 230 ~g~~d~vid~~g-----~~---~~~~~~~~~l~~-~G~iv~~ 262 (340)
T 3s2e_A 230 IGGAHGVLVTAV-----SP---KAFSQAIGMVRR-GGTIALN 262 (340)
T ss_dssp HSSEEEEEESSC-----CH---HHHHHHHHHEEE-EEEEEEC
T ss_pred CCCCCEEEEeCC-----CH---HHHHHHHHHhcc-CCEEEEe
Confidence 236888876422 22 268889999999 9999875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.81 Score=42.57 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=56.8
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCc
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVV 254 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 254 (343)
...++++.+||-+|+|. |..+..+++... ..++.++.+....+.++++ |. ...+ .+... + ...
T Consensus 171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G---a~Vi~~~~~~~~~~~~~~l---Ga---~~v~--~~~~~---~--~~~ 234 (348)
T 3two_A 171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG---AEVSVFARNEHKKQDALSM---GV---KHFY--TDPKQ---C--KEE 234 (348)
T ss_dssp HTTCCTTCEEEEESCSHHHHHHHHHHHHTT---CEEEEECSSSTTHHHHHHT---TC---SEEE--SSGGG---C--CSC
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHhc---CC---Ceec--CCHHH---H--hcC
Confidence 35888999999999875 777777777643 3455555444444444442 21 1112 11111 2 127
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|+|+-... ... .++...++|+| ||++++.
T Consensus 235 ~D~vid~~g-----~~~---~~~~~~~~l~~-~G~iv~~ 264 (348)
T 3two_A 235 LDFIISTIP-----THY---DLKDYLKLLTY-NGDLALV 264 (348)
T ss_dssp EEEEEECCC-----SCC---CHHHHHTTEEE-EEEEEEC
T ss_pred CCEEEECCC-----cHH---HHHHHHHHHhc-CCEEEEE
Confidence 999986422 221 46778999999 9999875
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.07 E-value=0.86 Score=42.57 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=58.3
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc---cCCc----
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE---DMDF---- 246 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~---~~dl---- 246 (343)
+...++++.+||-+|+|. |.++..+++..+...+.+++.+. ...+.++++ |. . ..+... ..++
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~l---Ga---~-~vi~~~~~~~~~~~~~i 235 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA--TRLSKAKEI---GA---D-LVLQISKESPQEIARKV 235 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHHT---TC---S-EEEECSSCCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHh---CC---C-EEEcCcccccchHHHHH
Confidence 345788999999999985 77777888765433445555444 444444432 22 1 112111 0111
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.. .+.+|+|+-. .+.. ..++...++|+| ||++++.
T Consensus 236 ~~~~-~~g~D~vid~-----~g~~---~~~~~~~~~l~~-~G~iv~~ 272 (356)
T 1pl8_A 236 EGQL-GCKPEVTIEC-----TGAE---ASIQAGIYATRS-GGTLVLV 272 (356)
T ss_dssp HHHH-TSCCSEEEEC-----SCCH---HHHHHHHHHSCT-TCEEEEC
T ss_pred HHHh-CCCCCEEEEC-----CCCh---HHHHHHHHHhcC-CCEEEEE
Confidence 1010 1468999764 2222 157888999999 9999864
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=2 Score=38.71 Aligned_cols=133 Identities=15% Similarity=0.102 Sum_probs=76.1
Q ss_pred CCeEEEEcCCcCHHHHHHHHH---c----CCCceEEEE-----cChhH----------------------HHHHH-HHh-
Q 019282 182 NSHVLEIGCGTLRVGVHFIRY---L----NPENFHCLE-----RDELS----------------------LMAAF-RYE- 225 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~---~----~~~~~~vvd-----id~s~----------------------~~~a~-a~~- 225 (343)
...|+|+||-.|..+..++.. + ....+++.| .+... +.... ..+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999999887652 1 235666666 21100 01000 011
Q ss_pred cccCCCCCCCcEEEecccCCc-CCC---CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccC
Q 019282 226 LPSQGLLHKRPIIVRGEDMDF-TKF---GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSR 301 (343)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~dl-~~~---~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~ 301 (343)
....+....++.++.|...+. +.+ .+..+||+|+.-.-. -.....+++.+...|+| ||++++-. ..+ ..
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~-GGvIv~DD-~~~-~~ 222 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK-GSIVAFDE-LDN-PK 222 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE-EEEEEESS-TTC-TT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC-CcEEEEcC-CCC-CC
Confidence 111233335778888744332 111 124579999886521 12234489999999999 88887643 211 11
Q ss_pred C-C-HHHHHHHHHhcCCcEEEe
Q 019282 302 L-G-GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 302 ~-~-~~~l~~~L~~aGf~~v~~ 321 (343)
+ + ...+.+.+.+.|.+....
T Consensus 223 w~G~~~A~~ef~~~~~~~i~~~ 244 (257)
T 3tos_A 223 WPGENIAMRKVLGLDHAPLRLL 244 (257)
T ss_dssp CTHHHHHHHHHTCTTSSCCEEC
T ss_pred ChHHHHHHHHHHhhCCCeEEEc
Confidence 2 2 666777778888765543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=0.53 Score=44.42 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=59.9
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CC-
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TK- 248 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~- 248 (343)
+...++++.+||=+|+|. |.++..+++..+.. .++.++.+....+.++++. . ...+.....++ .+
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~--~Vi~~~~~~~~~~~a~~lG---a----~~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGAT--TVILSTRQATKRRLAEEVG---A----TATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHT---C----SEEECTTSSCHHHHHHST
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcC---C----CEEECCCCcCHHHHHHhh
Confidence 446789999999999875 77777777765433 3444555444455444432 1 11121111121 11
Q ss_pred --CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 --FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 --~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. ..+.+|+|+-. .+.. ..++.+.++|+| ||++++.
T Consensus 247 ~~~-~~gg~Dvvid~-----~G~~---~~~~~~~~~l~~-~G~vv~~ 283 (370)
T 4ej6_A 247 VGL-VPGGVDVVIEC-----AGVA---ETVKQSTRLAKA-GGTVVIL 283 (370)
T ss_dssp TSS-STTCEEEEEEC-----SCCH---HHHHHHHHHEEE-EEEEEEC
T ss_pred hhc-cCCCCCEEEEC-----CCCH---HHHHHHHHHhcc-CCEEEEE
Confidence 1 13479999864 2322 268889999999 9999875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.52 E-value=0.68 Score=39.16 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=54.8
Q ss_pred HhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----C
Q 019282 175 EASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----K 248 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~ 248 (343)
+..+++++.+||.+|+ |.|..+..++...+ ..+.+++.+. ...+.+++. +. . ..+.....+.. +
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~--~~~~~~~~~---g~---~-~~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSD--AKREMLSRL---GV---E-YVGDSRSVDFADEILE 101 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSH--HHHHHHHTT---CC---S-EEEETTCSTHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCH--HHHHHHHHc---CC---C-EEeeCCcHHHHHHHHH
Confidence 3457889999999994 45666666655443 3444555443 333333321 21 1 12221111110 0
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+.+|+|+.+.. . ..++.+.+.|+| ||+++..
T Consensus 102 ~~~~~~~D~vi~~~g-----~----~~~~~~~~~l~~-~G~~v~~ 136 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-----G----EAIQRGVQILAP-GGRFIEL 136 (198)
T ss_dssp HTTTCCEEEEEECCC-----T----HHHHHHHHTEEE-EEEEEEC
T ss_pred HhCCCCCeEEEECCc-----h----HHHHHHHHHhcc-CCEEEEE
Confidence 111236999986532 2 167889999999 9998775
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=2.8 Score=38.69 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=65.7
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC-CCCCcEEEecccCCcCC-CC--------C
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL-LHKRPIIVRGEDMDFTK-FG--------S 251 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~-~~~~~~~~~~~~~dl~~-~~--------~ 251 (343)
..|++||||-=..+..+. ...+.+++++|. +...+.+++... .+. ...+...+.. |+.+ +. .
T Consensus 104 ~QvV~LGaGlDTra~Rl~---~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~---Dl~d~~~~~l~~~g~d 176 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLD---WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPI---DLRQDWPPALRSAGFD 176 (310)
T ss_dssp CEEEEETCTTCCHHHHSC---CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEEC---CTTSCHHHHHHHTTCC
T ss_pred CeEEEeCCCCCchhhhcc---CCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEec---chHhhHHHHHHhccCC
Confidence 469999999755543332 123467888885 444444444332 221 2223444544 3322 10 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.+.-=++++-.+++++++.....+++.+.+.+.| |+.+++.+
T Consensus 177 ~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~-gs~l~~d~ 218 (310)
T 2uyo_A 177 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV-GSRIAVET 218 (310)
T ss_dssp TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT-TCEEEEEC
T ss_pred CCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCC-CeEEEEEe
Confidence 1234578888999999998888899999999999 99988874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.91 Score=41.90 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHH-HhcccCCCCCCCcEEEecccCCcC
Q 019282 171 EFLAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFR-YELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a-~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+...++++.+||-+|+ |.|..+..+++..+ ..++.++.+....+.+ ++. +. ...+.....++.
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~~~~~~~~~---g~----~~~~~~~~~~~~ 208 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKG---CRVVGIAGGAEKCRFLVEEL---GF----DGAIDYKNEDLA 208 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHTT---CC----SEEEETTTSCHH
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHc---CC----CEEEECCCHHHH
Confidence 33445578899999999998 56777777776543 3444444444444433 322 11 112221112221
Q ss_pred CCC---CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFG---SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~---~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.. ..+.+|+|+.+.. .. .+..+.+.|+| ||++++.
T Consensus 209 ~~~~~~~~~~~d~vi~~~g-----~~----~~~~~~~~l~~-~G~iv~~ 247 (336)
T 4b7c_A 209 AGLKRECPKGIDVFFDNVG-----GE----ILDTVLTRIAF-KARIVLC 247 (336)
T ss_dssp HHHHHHCTTCEEEEEESSC-----HH----HHHHHHTTEEE-EEEEEEC
T ss_pred HHHHHhcCCCceEEEECCC-----cc----hHHHHHHHHhh-CCEEEEE
Confidence 000 1346999976432 21 67889999999 9999875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=88.79 E-value=0.24 Score=46.36 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=59.5
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----CC
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----KF 249 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~~ 249 (343)
+...++++.+||=+|+|. |.++..+++......+.++ +.+....+.++++. . ...+.....++. +.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~--~~~~~~~~~~~~lG---a----~~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAV--GSRKHCCDIALEYG---A----TDIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEE--CCCHHHHHHHHHHT---C----CEEECGGGSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhC---C----ceEEcCCCcCHHHHHHHH
Confidence 457889999999999875 7777777776543344454 44444444444432 1 112221112221 11
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.....+|+|+-. .+... .++...+.|+| ||++++.
T Consensus 231 t~g~g~D~v~d~-----~g~~~---~~~~~~~~l~~-~G~~v~~ 265 (352)
T 3fpc_A 231 TDGKGVDKVVIA-----GGDVH---TFAQAVKMIKP-GSDIGNV 265 (352)
T ss_dssp TTTCCEEEEEEC-----SSCTT---HHHHHHHHEEE-EEEEEEC
T ss_pred cCCCCCCEEEEC-----CCChH---HHHHHHHHHhc-CCEEEEe
Confidence 123469999863 22221 57889999999 9999864
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=1.5 Score=40.41 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=56.0
Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc-CCcC--
Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-MDFT-- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-~dl~-- 247 (343)
+.+..++.++.+||-.|+ |.|..+..++...+ ..+.+++.+. ...+.+++. +. . ..+.... .++.
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~--~~~~~~~~~---g~---~-~~~d~~~~~~~~~~ 206 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSD--EKIAYLKQI---GF---D-AAFNYKTVNSLEEA 206 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSH--HHHHHHHHT---TC---S-EEEETTSCSCHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCH--HHHHHHHhc---CC---c-EEEecCCHHHHHHH
Confidence 334467889999999998 56666666665433 2444444444 333333332 11 1 1121111 1111
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ..+.+|+|+.+.. .. .+....++|+| ||++++.
T Consensus 207 ~~~~-~~~~~d~vi~~~g-----~~----~~~~~~~~l~~-~G~~v~~ 243 (333)
T 1v3u_A 207 LKKA-SPDGYDCYFDNVG-----GE----FLNTVLSQMKD-FGKIAIC 243 (333)
T ss_dssp HHHH-CTTCEEEEEESSC-----HH----HHHHHHTTEEE-EEEEEEC
T ss_pred HHHH-hCCCCeEEEECCC-----hH----HHHHHHHHHhc-CCEEEEE
Confidence 01 1247999987543 21 47888999999 9998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=88.31 E-value=2.2 Score=39.76 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=60.6
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc---cCCc----
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE---DMDF---- 246 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~---~~dl---- 246 (343)
+...+.++.+||=+|+|. |.++..+++..+...+.+++.+.... +.++++ .. .+.....+ ..++
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~--~~a~~l-~~-----~~~~~~~~~~~~~~~~~~v 244 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL--KFAKEI-CP-----EVVTHKVERLSAEESAKKI 244 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH--HHHHHH-CT-----TCEEEECCSCCHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH--HHHHHh-ch-----hcccccccccchHHHHHHH
Confidence 446788999999999875 77778888776544466666665444 333432 11 11111100 0111
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+......+|+|+-. .+.+. .++...++|+| ||++++.
T Consensus 245 ~~~t~g~g~Dvvid~-----~g~~~---~~~~~~~~l~~-~G~iv~~ 282 (363)
T 3m6i_A 245 VESFGGIEPAVALEC-----TGVES---SIAAAIWAVKF-GGKVFVI 282 (363)
T ss_dssp HHHTSSCCCSEEEEC-----SCCHH---HHHHHHHHSCT-TCEEEEC
T ss_pred HHHhCCCCCCEEEEC-----CCChH---HHHHHHHHhcC-CCEEEEE
Confidence 111123479999864 23321 57889999999 9999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.82 Score=43.11 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=55.6
Q ss_pred cCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-cCCCCCCCc
Q 019282 177 SHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-FTKFGSGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-l~~~~~~~~ 254 (343)
.+++++.+||-+|+|. |..+..+++.... .+.+++.+.... +.++++ |. . ..+.....+ .... .+.
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~--~~a~~l---Ga---~-~vi~~~~~~~~~~~--~~g 257 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKR--EAAKAL---GA---D-EVVNSRNADEMAAH--LKS 257 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGH--HHHHHH---TC---S-EEEETTCHHHHHTT--TTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH--HHHHHc---CC---c-EEeccccHHHHHHh--hcC
Confidence 5788999999999975 7777777776542 344555544433 333332 21 1 112111111 1112 147
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|+|+-...- .. .++...+.|+| ||++++.
T Consensus 258 ~Dvvid~~g~-----~~---~~~~~~~~l~~-~G~iv~~ 287 (369)
T 1uuf_A 258 FDFILNTVAA-----PH---NLDDFTTLLKR-DGTMTLV 287 (369)
T ss_dssp EEEEEECCSS-----CC---CHHHHHTTEEE-EEEEEEC
T ss_pred CCEEEECCCC-----HH---HHHHHHHHhcc-CCEEEEe
Confidence 9999864321 11 36778899999 9998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=88.16 E-value=0.85 Score=42.80 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=58.4
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---- 247 (343)
+.+...++++.+||-+|+|. |..+..+++..+. .+.+++ .+....+.++++ |. . ..+..+..++.
T Consensus 181 l~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~--~~~~~~~~~~~l---Ga---~-~vi~~~~~~~~~~v~ 250 (363)
T 3uog_A 181 LVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTS--SSREKLDRAFAL---GA---D-HGINRLEEDWVERVY 250 (363)
T ss_dssp HTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEE--SCHHHHHHHHHH---TC---S-EEEETTTSCHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEe--cCchhHHHHHHc---CC---C-EEEcCCcccHHHHHH
Confidence 33456788999999999875 7777777776442 444444 444444444432 22 1 11211111211
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.......+|+|+-... .. .+....++|+| ||++++.
T Consensus 251 ~~~~g~g~D~vid~~g-----~~----~~~~~~~~l~~-~G~iv~~ 286 (363)
T 3uog_A 251 ALTGDRGADHILEIAG-----GA----GLGQSLKAVAP-DGRISVI 286 (363)
T ss_dssp HHHTTCCEEEEEEETT-----SS----CHHHHHHHEEE-EEEEEEE
T ss_pred HHhCCCCceEEEECCC-----hH----HHHHHHHHhhc-CCEEEEE
Confidence 0112347999986432 11 46778899999 9999876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.11 E-value=2.4 Score=39.77 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=61.2
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecc--cCCcC--
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGE--DMDFT-- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~--~~dl~-- 247 (343)
+.+...++++.+||=+|+|. |.++..+++......+.+++.+... .+.++++ |. . ..+... ..++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~--~~~a~~l---Ga---~-~vi~~~~~~~~~~~~ 255 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKK--YETAKKF---GV---N-EFVNPKDHDKPIQEV 255 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTH--HHHHHTT---TC---C-EEECGGGCSSCHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH--HHHHHHc---CC---c-EEEccccCchhHHHH
Confidence 44556788999999999974 7777888877654455555555543 4444442 21 1 122111 11111
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
+. .++.+|+|+-. .+.. ..++...+.|+| | |++++.
T Consensus 256 i~~~-~~gg~D~vid~-----~g~~---~~~~~~~~~l~~-g~G~iv~~ 294 (378)
T 3uko_A 256 IVDL-TDGGVDYSFEC-----IGNV---SVMRAALECCHK-GWGTSVIV 294 (378)
T ss_dssp HHHH-TTSCBSEEEEC-----SCCH---HHHHHHHHTBCT-TTCEEEEC
T ss_pred HHHh-cCCCCCEEEEC-----CCCH---HHHHHHHHHhhc-cCCEEEEE
Confidence 11 12479999864 2332 268889999999 9 998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.88 E-value=1.9 Score=40.13 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=56.9
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc-CCcC-CC--
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-MDFT-KF-- 249 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-~dl~-~~-- 249 (343)
+..+++++.+||-+|+|. |..+..+++.... .+.+++.+. ...+.++++ +. . ..+.... .++. ..
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~--~~~~~~~~l---Ga---~-~~~~~~~~~~~~~~i~~ 231 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP--RRLEVAKNC---GA---D-VTLVVDPAKEEESSIIE 231 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH--HHHHHHHHT---TC---S-EEEECCTTTSCHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCH--HHHHHHHHh---CC---C-EEEcCcccccHHHHHHH
Confidence 345788999999999874 6777777776443 344444444 444444432 22 1 1121111 1111 00
Q ss_pred -CC---CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 -GS---GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 -~~---~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ...+|+|+-.. +.. ..++...++|+| ||++++.
T Consensus 232 ~~~~~~g~g~D~vid~~-----g~~---~~~~~~~~~l~~-~G~iv~~ 270 (352)
T 1e3j_A 232 RIRSAIGDLPNVTIDCS-----GNE---KCITIGINITRT-GGTLMLV 270 (352)
T ss_dssp HHHHHSSSCCSEEEECS-----CCH---HHHHHHHHHSCT-TCEEEEC
T ss_pred HhccccCCCCCEEEECC-----CCH---HHHHHHHHHHhc-CCEEEEE
Confidence 01 24689997643 222 157888999999 9999865
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.77 E-value=1.7 Score=40.86 Aligned_cols=103 Identities=10% Similarity=0.031 Sum_probs=57.9
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCcCCC
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDFTKF 249 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl~~~ 249 (343)
+.+..+++++.+||-+|+|. |..+..+++......+.+++.+. ...+.++++ |. . ..+.... .++.+.
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~~~~~~~l---Ga---~-~vi~~~~~~~~~~~~ 254 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP--DKFEKAKVF---GA---T-DFVNPNDHSEPISQV 254 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GGHHHHHHT---TC---C-EEECGGGCSSCHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHh---CC---c-eEEeccccchhHHHH
Confidence 33446788999999999874 67777777765432344444444 333333432 21 1 1121111 111100
Q ss_pred -C--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 250 -G--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 250 -~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
. ..+.+|+|+-.- +.. ..++...++|+| | |++++.
T Consensus 255 ~~~~~~~g~D~vid~~-----g~~---~~~~~~~~~l~~-~~G~iv~~ 293 (374)
T 1cdo_A 255 LSKMTNGGVDFSLECV-----GNV---GVMRNALESCLK-GWGVSVLV 293 (374)
T ss_dssp HHHHHTSCBSEEEECS-----CCH---HHHHHHHHTBCT-TTCEEEEC
T ss_pred HHHHhCCCCCEEEECC-----CCH---HHHHHHHHHhhc-CCcEEEEE
Confidence 0 123689997642 222 257889999999 9 998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=87.36 E-value=3 Score=39.07 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCcC--
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDFT-- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl~-- 247 (343)
+.+...++++.+||-+|+|. |..+..+++......+.+++.+.. ..+.++++ |. . ..+.... .++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~~l---Ga---~-~vi~~~~~~~~~~~~ 253 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAIEL---GA---T-ECLNPKDYDKPIYEV 253 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHHT---TC---S-EEECGGGCSSCHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHHHHHc---CC---c-EEEecccccchHHHH
Confidence 33456788999999999874 777777777654334444544443 33334432 21 1 1121111 1111
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
+. ..+.+|+|+-. .+.. ..++...++|+| + |++++.
T Consensus 254 i~~~-t~gg~Dvvid~-----~g~~---~~~~~~~~~l~~-~~G~iv~~ 292 (373)
T 1p0f_A 254 ICEK-TNGGVDYAVEC-----AGRI---ETMMNALQSTYC-GSGVTVVL 292 (373)
T ss_dssp HHHH-TTSCBSEEEEC-----SCCH---HHHHHHHHTBCT-TTCEEEEC
T ss_pred HHHH-hCCCCCEEEEC-----CCCH---HHHHHHHHHHhc-CCCEEEEE
Confidence 11 12379999864 2222 257889999999 9 998764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=87.21 E-value=2.1 Score=40.18 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=57.6
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCcC--
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDFT-- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl~-- 247 (343)
+.+..+++++.+||-+|+|. |..+..+++......+.+++.+. ...+.++++ |. . ..+.... .++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~~~~~~~l---Ga---~-~vi~~~~~~~~~~~~ 253 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK--DKFAKAKEV---GA---T-ECVNPQDYKKPIQEV 253 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GGHHHHHHT---TC---S-EEECGGGCSSCHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHHHh---CC---c-eEecccccchhHHHH
Confidence 33446788999999999875 66777777765432344444444 333333432 21 1 1121111 1111
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
+. ..+.+|+|+-. .+.. ..++...++|++ | |++++.
T Consensus 254 ~~~~-~~~g~D~vid~-----~g~~---~~~~~~~~~l~~-~~G~iv~~ 292 (374)
T 2jhf_A 254 LTEM-SNGGVDFSFEV-----IGRL---DTMVTALSCCQE-AYGVSVIV 292 (374)
T ss_dssp HHHH-TTSCBSEEEEC-----SCCH---HHHHHHHHHBCT-TTCEEEEC
T ss_pred HHHH-hCCCCcEEEEC-----CCCH---HHHHHHHHHhhc-CCcEEEEe
Confidence 11 12379998764 2222 257889999999 9 998764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.89 Score=43.37 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----CCCCC
Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----KFGSG 252 (343)
Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~~~~~ 252 (343)
.++++.+||=+|+|. |.++..+++..+.. .++.++.+....++++++. . . ..+.....++. +....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~--~Vi~~~~~~~~~~~~~~lG---a---~-~vi~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGAS--KVILSEPSEVRRNLAKELG---A---D-HVIDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHT---C---S-EEECTTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHcC---C---C-EEEcCCCCCHHHHHHHHhCC
Confidence 678999999999864 66667777764432 4555555555555555432 1 1 11211111211 11123
Q ss_pred CceeEEEEccccccCCchH--HHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKL--VWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~--~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..+|+|+-. .+... ....++.+.+.+++ ||++++.
T Consensus 281 ~g~D~vid~-----~g~~~~~~~~~~~~l~~~~~~-~G~iv~~ 317 (404)
T 3ip1_A 281 LGAKLFLEA-----TGVPQLVWPQIEEVIWRARGI-NATVAIV 317 (404)
T ss_dssp CCCSEEEEC-----SSCHHHHHHHHHHHHHHCSCC-CCEEEEC
T ss_pred CCCCEEEEC-----CCCcHHHHHHHHHHHHhccCC-CcEEEEe
Confidence 369999753 33331 11233333455599 9999875
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=2.1 Score=40.19 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=58.0
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCcCCC
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDFTKF 249 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl~~~ 249 (343)
+.+...++++.+||-+|+|. |.++..+++......+.+++.+. ...+.++++ |. . ..+.... .++.+.
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~l---Ga---~-~vi~~~~~~~~~~~~ 257 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING--EKFPKAKAL---GA---T-DCLNPRELDKPVQDV 257 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GGHHHHHHT---TC---S-EEECGGGCSSCHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHHHh---CC---c-EEEccccccchHHHH
Confidence 34456788999999999874 67777777765432344444444 333434432 21 1 1121111 111100
Q ss_pred -C--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 250 -G--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 250 -~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
. ..+.+|+|+-. .+.. ..++...+.|++ | |++++.
T Consensus 258 v~~~~~~g~Dvvid~-----~G~~---~~~~~~~~~l~~-~~G~iv~~ 296 (376)
T 1e3i_A 258 ITELTAGGVDYSLDC-----AGTA---QTLKAAVDCTVL-GWGSCTVV 296 (376)
T ss_dssp HHHHHTSCBSEEEES-----SCCH---HHHHHHHHTBCT-TTCEEEEC
T ss_pred HHHHhCCCccEEEEC-----CCCH---HHHHHHHHHhhc-CCCEEEEE
Confidence 0 12368998753 2222 267889999999 9 998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=3.8 Score=38.26 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=58.0
Q ss_pred HHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCcC--
Q 019282 173 LAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDFT-- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl~-- 247 (343)
+.+..+++++.+||-+|+|. |.++..+++......+.+++.+... .+.++++ |. . ..+.... .++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~--~~~~~~l---Ga---~-~vi~~~~~~~~~~~~ 252 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK--FARAKEF---GA---T-ECINPQDFSKPIQEV 252 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG--HHHHHHH---TC---S-EEECGGGCSSCHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH--HHHHHHc---CC---c-eEeccccccccHHHH
Confidence 33446788999999999874 6777777776543344444444433 3333332 21 1 1121111 1111
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
+. ..+.+|+|+-. .+.. ..++...+.|+| + |++++.
T Consensus 253 v~~~-~~~g~D~vid~-----~g~~---~~~~~~~~~l~~-~~G~iv~~ 291 (373)
T 2fzw_A 253 LIEM-TDGGVDYSFEC-----IGNV---KVMRAALEACHK-GWGVSVVV 291 (373)
T ss_dssp HHHH-TTSCBSEEEEC-----SCCH---HHHHHHHHTBCT-TTCEEEEC
T ss_pred HHHH-hCCCCCEEEEC-----CCcH---HHHHHHHHhhcc-CCcEEEEE
Confidence 11 12379999764 2222 257889999999 9 998764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=85.84 E-value=2.2 Score=35.68 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcCh
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDE 215 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~ 215 (343)
.++..+++......-.+| -|||+|-|+|+.=.++.+.++...+++.|-..
T Consensus 25 aQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~ 74 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAV 74 (174)
T ss_dssp HHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeee
Confidence 356677777766554444 69999999999999999999999999998543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=85.11 E-value=6.6 Score=37.51 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC-------CCceEEEEcChhHH
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN-------PENFHCLERDELSL 218 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~-------~~~~~vvdid~s~~ 218 (343)
...+...+|+|+|.|+|.++..+++++. ...++.+++++...
T Consensus 76 ~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 76 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred cCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 3445556899999999999999987653 23566676666443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=85.02 E-value=1.7 Score=40.12 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=56.9
Q ss_pred HhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----C
Q 019282 175 EASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----K 248 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~ 248 (343)
+...++++.+||-+|+ |.|..+..+++..+ ..+.+++. +....+.+++. +. . ..+.....++. +
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~--~~~~~~~~~~~---ga---~-~~~~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVAS--TDEKLKIAKEY---GA---E-YLINASKEDILRQVLK 211 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEES--SHHHHHHHHHT---TC---S-EEEETTTSCHHHHHHH
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeC--CHHHHHHHHHc---CC---c-EEEeCCCchHHHHHHH
Confidence 3357889999999994 46777777776543 24444444 44444444442 11 1 12221112221 0
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+-... .. .++.+.++|+| ||++++.
T Consensus 212 ~~~~~g~D~vid~~g-----~~----~~~~~~~~l~~-~G~iv~~ 246 (334)
T 3qwb_A 212 FTNGKGVDASFDSVG-----KD----TFEISLAALKR-KGVFVSF 246 (334)
T ss_dssp HTTTSCEEEEEECCG-----GG----GHHHHHHHEEE-EEEEEEC
T ss_pred HhCCCCceEEEECCC-----hH----HHHHHHHHhcc-CCEEEEE
Confidence 111346999986532 21 57788899999 9999875
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.93 E-value=1.2 Score=41.76 Aligned_cols=102 Identities=10% Similarity=0.180 Sum_probs=59.8
Q ss_pred HHHhcCCC-----CCCeEEEEc-CC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--
Q 019282 173 LAEASHIT-----PNSHVLEIG-CG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-- 243 (343)
Q Consensus 173 l~~~~~l~-----~~~rVLDIG-CG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-- 243 (343)
+.+...+. ++.+||=+| +| .|.++..+++.+... .++.++.+....+.++++. . . ..+....
T Consensus 158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~--~Vi~~~~~~~~~~~~~~lG---a---d-~vi~~~~~~ 228 (363)
T 4dvj_A 158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL--TVIATASRPETQEWVKSLG---A---H-HVIDHSKPL 228 (363)
T ss_dssp HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS--EEEEECSSHHHHHHHHHTT---C---S-EEECTTSCH
T ss_pred HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHcC---C---C-EEEeCCCCH
Confidence 33445666 788999998 54 588888888764334 4555555555555555432 1 1 1121110
Q ss_pred -CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 244 -MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 244 -~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..+.+. ..+.+|+|+-. .+.. ..++.+.++|+| ||++++.
T Consensus 229 ~~~v~~~-~~~g~Dvvid~-----~g~~---~~~~~~~~~l~~-~G~iv~~ 269 (363)
T 4dvj_A 229 AAEVAAL-GLGAPAFVFST-----THTD---KHAAEIADLIAP-QGRFCLI 269 (363)
T ss_dssp HHHHHTT-CSCCEEEEEEC-----SCHH---HHHHHHHHHSCT-TCEEEEC
T ss_pred HHHHHHh-cCCCceEEEEC-----CCch---hhHHHHHHHhcC-CCEEEEE
Confidence 011212 23579998763 2222 267889999999 9999875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=84.71 E-value=0.28 Score=45.60 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHhcCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC--
Q 019282 172 FLAEASHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT-- 247 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~-- 247 (343)
.+.+...++++.+||-+|+| .|..+..+++..+. .+.+++.+...... +++. +. . ..+.....++.
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~--~~~l---ga---~-~~~~~~~~~~~~~ 204 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEE--LLRL---GA---A-YVIDTSTAPLYET 204 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHH--HHHH---TC---S-EEEETTTSCHHHH
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH--HHhC---CC---c-EEEeCCcccHHHH
Confidence 34455788999999999987 67788888876543 55566655543333 3332 11 1 11221112221
Q ss_pred --CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 --KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 --~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+......+|+|+-.. +.. .+....++|+| ||++++.
T Consensus 205 ~~~~~~~~g~Dvvid~~-----g~~----~~~~~~~~l~~-~G~iv~~ 242 (340)
T 3gms_A 205 VMELTNGIGADAAIDSI-----GGP----DGNELAFSLRP-NGHFLTI 242 (340)
T ss_dssp HHHHTTTSCEEEEEESS-----CHH----HHHHHHHTEEE-EEEEEEC
T ss_pred HHHHhCCCCCcEEEECC-----CCh----hHHHHHHHhcC-CCEEEEE
Confidence 111234799998643 222 22345589999 9999875
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=0.95 Score=41.99 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC----CCCC
Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK----FGSG 252 (343)
Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~----~~~~ 252 (343)
.++++.+||-+|+|. |..+..+++......+.+++.+. ...+.++++ |. . ..+.... ++.+ ....
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~--~~~~~~~~l---Ga---~-~~i~~~~-~~~~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDD--DRLALAREV---GA---D-AAVKSGA-GAADAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCH--HHHHHHHHT---TC---S-EEEECST-THHHHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHc---CC---C-EEEcCCC-cHHHHHHHHhCC
Confidence 678899999999975 77888888876445555555544 444444443 21 1 1121111 1110 1112
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
..+|+|+-. .+... .++...+.|+| ||++++.
T Consensus 238 ~g~d~v~d~-----~G~~~---~~~~~~~~l~~-~G~iv~~ 269 (345)
T 3jv7_A 238 QGATAVFDF-----VGAQS---TIDTAQQVVAV-DGHISVV 269 (345)
T ss_dssp GCEEEEEES-----SCCHH---HHHHHHHHEEE-EEEEEEC
T ss_pred CCCeEEEEC-----CCCHH---HHHHHHHHHhc-CCEEEEE
Confidence 369998763 33322 68889999999 9999875
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=84.26 E-value=5.3 Score=37.87 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=63.6
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC--C----CCCCcee
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK--F----GSGVVYD 256 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~--~----~~~~~fD 256 (343)
.+++|+-||.|.++..+...- -..+.++++|......- +.+ .. ...++.++..++.. + .....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~--~~N----~~--~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTH--AIN----FP--RSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHH--HHH----CT--TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHH--HHh----CC--CCceEecChhhcCHHHHHhhcccCCCee
Confidence 589999999999999988742 12233555555443322 211 11 22333332222210 0 0135799
Q ss_pred EEEEccccccCC-------chHHHHH---HHHHHhccCCCCcEEEEEeccccccCCC---HHHHHHHHHhcCCcE
Q 019282 257 LIYASAVFLHMP-------DKLVWVG---LERLASKLRPYDGRIFVSHNIKFCSRLG---GEECTKRLTSLGLEY 318 (343)
Q Consensus 257 lIvs~~v~~hl~-------~~~~~~~---L~~l~r~LkP~GG~lvi~~~~~~~~~~~---~~~l~~~L~~aGf~~ 318 (343)
+|+...-...+. ++....+ +-++.+.++| -.+++..-..+..... .+.+. .|++.||.+
T Consensus 74 ~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 74 GIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp EEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred EEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence 999764433221 1111122 3345566788 5555553222222111 45666 889999987
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=2.2 Score=39.33 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=56.9
Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHH-hcccCCCCCCCcEEEeccc-CCcCC
Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRY-ELPSQGLLHKRPIIVRGED-MDFTK 248 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~-~~~~~~~~~~~~~~~~~~~-~dl~~ 248 (343)
+.+...++++.+||-+|+ |.|..+..+++..+ ..+.+++.+. ...+.++ +. +. . ..+.... .++.+
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~--~~~~~~~~~~---g~---~-~~~d~~~~~~~~~ 216 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSK--EKVDLLKTKF---GF---D-DAFNYKEESDLTA 216 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSH--HHHHHHHHTS---CC---S-EEEETTSCSCSHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--HHHHHHHHHc---CC---c-eEEecCCHHHHHH
Confidence 334467889999999997 56777777776543 2444444443 3333333 22 21 1 1221111 11110
Q ss_pred C-C--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 F-G--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~-~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. . ..+.+|+|+.... . ..++...++|+| ||++++.
T Consensus 217 ~~~~~~~~~~d~vi~~~g-----~----~~~~~~~~~l~~-~G~~v~~ 254 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFENVG-----G----KMLDAVLVNMNM-HGRIAVC 254 (345)
T ss_dssp HHHHHCTTCEEEEEESSC-----H----HHHHHHHTTEEE-EEEEEEC
T ss_pred HHHHHhCCCCcEEEECCC-----H----HHHHHHHHHHhc-CCEEEEE
Confidence 0 0 1246999986532 2 167889999999 9999764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=2.9 Score=39.12 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHHhcCCCCCCeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---
Q 019282 173 LAEASHITPNSHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--- 247 (343)
+.+...++++.+||-+| .|.|..+..+++..+. .+.+++. +....+.+++. +. . ..+.....++.
T Consensus 155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~--~~~~~~~~~~~---Ga---~-~~~~~~~~~~~~~~ 224 (362)
T 2c0c_A 155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCS--SDEKSAFLKSL---GC---D-RPINYKTEPVGTVL 224 (362)
T ss_dssp HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEES--SHHHHHHHHHT---TC---S-EEEETTTSCHHHHH
T ss_pred HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEEC--CHHHHHHHHHc---CC---c-EEEecCChhHHHHH
Confidence 33445788999999999 4578888888876532 3444444 43344434432 21 1 12221111211
Q ss_pred -CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 -KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 -~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ..+.+|+|+-... . ..++.+.++|++ +|++++.
T Consensus 225 ~~~-~~~g~D~vid~~g-----~----~~~~~~~~~l~~-~G~iv~~ 260 (362)
T 2c0c_A 225 KQE-YPEGVDVVYESVG-----G----AMFDLAVDALAT-KGRLIVI 260 (362)
T ss_dssp HHH-CTTCEEEEEECSC-----T----HHHHHHHHHEEE-EEEEEEC
T ss_pred HHh-cCCCCCEEEECCC-----H----HHHHHHHHHHhc-CCEEEEE
Confidence 01 1246999986532 2 267889999999 9998765
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=83.26 E-value=1.9 Score=34.46 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCC--ceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCceeE
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPE--NFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVYDL 257 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~--~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~fDl 257 (343)
..+|+=+|| |.++..+++.+... .+++++.++ ......++ .+ ...+.++..+-..+. .-..+|+
T Consensus 7 ~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~--~~~~~~~~---~g-----~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGY--GRVGSLLGEKLLASDIPLVVIETSR--TRVDELRE---RG-----VRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCH--HHHHHHHH---TT-----CEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHH---cC-----CCEEECCCCCHHHHHhcCcccCCE
Confidence 357888887 55677777665333 455555554 33332222 12 223433222211010 1246888
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
|++. +++......+-...+.+.| +..++.... ..+..+.|++.|-..+
T Consensus 75 vi~~-----~~~~~~n~~~~~~a~~~~~-~~~iiar~~--------~~~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 75 LILT-----IPNGYEAGEIVASARAKNP-DIEIIARAH--------YDDEVAYITERGANQV 122 (140)
T ss_dssp EEEC-----CSCHHHHHHHHHHHHHHCS-SSEEEEEES--------SHHHHHHHHHTTCSEE
T ss_pred EEEE-----CCChHHHHHHHHHHHHHCC-CCeEEEEEC--------CHHHHHHHHHCCCCEE
Confidence 8764 3443332234456677788 777655432 1234467788887643
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=83.12 E-value=0.54 Score=43.36 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHhcCCCCCCeEEEEc-C-CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---
Q 019282 173 LAEASHITPNSHVLEIG-C-GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIG-C-GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--- 247 (343)
+.+...++++.+||-+| + |.|..+..+++..+. .+.+++.+. ...+.+++. +. . ..+.....++.
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--~~~~~~~~~---Ga---~-~~~~~~~~~~~~~~ 201 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSP--EKAAHAKAL---GA---W-ETIDYSHEDVAKRV 201 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSH--HHHHHHHHH---TC---S-EEEETTTSCHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCH--HHHHHHHHc---CC---C-EEEeCCCccHHHHH
Confidence 33445788999999998 3 467777777776543 445555444 334444432 21 1 12221112211
Q ss_pred -CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 -KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 -~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+......+|+|+-... .. .+....++|+| ||++++.
T Consensus 202 ~~~~~~~g~Dvvid~~g-----~~----~~~~~~~~l~~-~G~iv~~ 238 (325)
T 3jyn_A 202 LELTDGKKCPVVYDGVG-----QD----TWLTSLDSVAP-RGLVVSF 238 (325)
T ss_dssp HHHTTTCCEEEEEESSC-----GG----GHHHHHTTEEE-EEEEEEC
T ss_pred HHHhCCCCceEEEECCC-----hH----HHHHHHHHhcC-CCEEEEE
Confidence 1112347999986432 21 56788999999 9999875
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=82.92 E-value=1 Score=41.81 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=56.2
Q ss_pred CCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc-CCc-CCCCCCCc
Q 019282 178 HITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED-MDF-TKFGSGVV 254 (343)
Q Consensus 178 ~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~-~dl-~~~~~~~~ 254 (343)
.+ ++.+||-+|+|. |..+..+++... .+..++.++.+....+.++++ |. . ..+.... .+. ........
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~-~Ga~Vi~~~~~~~~~~~~~~l---Ga---~-~vi~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALM-KNITIVGISRSKKHRDFALEL---GA---D-YVSEMKDAESLINKLTDGLG 238 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHC-TTCEEEEECSCHHHHHHHHHH---TC---S-EEECHHHHHHHHHHHHTTCC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHh---CC---C-EEeccccchHHHHHhhcCCC
Confidence 67 899999999974 667777777651 023455555555555544442 21 1 1121111 111 11111237
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|+|+-.- +.. ..++...++|+| ||++++.
T Consensus 239 ~D~vid~~-----g~~---~~~~~~~~~l~~-~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLV-----GTE---ETTYNLGKLLAQ-EGAIILV 268 (344)
T ss_dssp EEEEEESS-----CCH---HHHHHHHHHEEE-EEEEEEC
T ss_pred ccEEEECC-----CCh---HHHHHHHHHhhc-CCEEEEe
Confidence 99998643 222 257889999999 9998764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=82.67 E-value=6.9 Score=36.45 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=62.6
Q ss_pred CeEEEEcCCcCHHHHHHHHHcC-CCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCC----CCceeE
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLN-PENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGS----GVVYDL 257 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~-~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~----~~~fDl 257 (343)
.+|||+-||.|.++..+....- ...+.+++++.........+ ... ..++.+ |+.++.. ...+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N------~~~--~~~~~~---Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN------FPH--TQLLAK---TIEGITLEEFDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH------CTT--SCEECS---CGGGCCHHHHHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh------ccc--cccccC---CHHHccHhHcCcCCcCE
Confidence 5899999999999999887421 12344555655444333221 111 112333 3332221 115899
Q ss_pred EEEccccccCCc--------hHHHHHHH---HHHhccC--CCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 258 IYASAVFLHMPD--------KLVWVGLE---RLASKLR--PYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 258 Ivs~~v~~hl~~--------~~~~~~L~---~l~r~Lk--P~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
|+...-...+.. +.....+. ++.+.++ | -.+++..-..+......+.+.+.|++.||.+..
T Consensus 72 l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 72 ILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp EEECCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred EEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence 998654322211 11111223 4555666 7 355554222222222256788889999997654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=82.39 E-value=2.1 Score=41.08 Aligned_cols=47 Identities=4% Similarity=-0.099 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHH-HHcCCCceEEEEcChhHHHHHHHHh
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFI-RYLNPENFHCLERDELSLMAAFRYE 225 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la-~~~~~~~~~vvdid~s~~~~a~a~~ 225 (343)
.++++..|+|||++.|.++..++ +..+. ...++.+++.+...+..++
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~-~~~V~afEP~p~~~~~L~~ 270 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGK-FERVWMIEPDRINLQTLQN 270 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSC-CSEEEEECCCHHHHHHHHH
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHH
Confidence 35788999999999999999988 43332 2356667776665554444
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.39 E-value=8.7 Score=35.17 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=58.9
Q ss_pred HHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC----
Q 019282 174 AEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK---- 248 (343)
Q Consensus 174 ~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~---- 248 (343)
.....+.++.+||=+|+|. |.++..+++......+.+++.+.. ..++++++. . ...+.....+..+
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~--k~~~a~~lG---a----~~~i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSE--KLALAKSFG---A----MQTFNSSEMSAPQMQSV 223 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHHTT---C----SEEEETTTSCHHHHHHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHH--HHHHHHHcC---C----eEEEeCCCCCHHHHHHh
Confidence 3446788999999999874 556666677665544555655554 344444432 1 1122222222211
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+-. .+.. ..++...++|+| ||++++.
T Consensus 224 ~~~~~g~d~v~d~-----~G~~---~~~~~~~~~l~~-~G~~v~~ 259 (346)
T 4a2c_A 224 LRELRFNQLILET-----AGVP---QTVELAVEIAGP-HAQLALV 259 (346)
T ss_dssp HGGGCSSEEEEEC-----SCSH---HHHHHHHHHCCT-TCEEEEC
T ss_pred hcccCCccccccc-----cccc---chhhhhhheecC-CeEEEEE
Confidence 1122457877653 2222 267888999999 9999875
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=8.8 Score=35.81 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC---------------------CCCCCcEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG---------------------LLHKRPIIV 239 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~---------------------~~~~~~~~~ 239 (343)
+...|+-+|||-=.....+... ...+.+++++|....+..+.+.+...+ +...+...+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~-~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDE-DLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHT-TCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCC-CCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4568999999987776666542 113578999998777665443322100 012233444
Q ss_pred ecccCCcCC------------CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----cc-----
Q 019282 240 RGEDMDFTK------------FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----KF----- 298 (343)
Q Consensus 240 ~~~~~dl~~------------~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----~~----- 298 (343)
.. |+.+ ++ .+.-=++++-.++.+++......+|+.+.+...+ |.+++-... .|
T Consensus 169 ~~---DL~d~~~l~~~L~~~g~d-~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~--~~~i~yE~i~p~d~fg~~M~ 242 (334)
T 3iei_A 169 GA---DLRDLSELEEKLKKCNMN-TQLPTLLIAECVLVYMTPEQSANLLKWAANSFER--AMFINYEQVNMGDRFGQIMI 242 (334)
T ss_dssp EC---CTTCHHHHHHHHHHTTCC-TTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS--EEEEEEEECCTTSHHHHHHH
T ss_pred cc---ccccchhHHHHHHhcCCC-CCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC--ceEEEEeccCCCCHHHHHHH
Confidence 33 3322 21 2345678888899999999998999999988765 555443211 01
Q ss_pred ----------c---cCCCHHHHHHHHHhcCCcEEEee
Q 019282 299 ----------C---SRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 299 ----------~---~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
. ...++++..+++.++||+.+...
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence 0 01136788899999999986543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.10 E-value=3.6 Score=38.24 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=56.3
Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---
Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--- 247 (343)
+.+..+++++.+||-+|+ |.|..+..+++..+ ..+.+++.+. ...+.+++. +. . ..+.....++.
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~--~~~~~~~~~---ga---~-~~~d~~~~~~~~~~ 231 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTE--EGQKIVLQN---GA---H-EVFNHREVNYIDKI 231 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSH--HHHHHHHHT---TC---S-EEEETTSTTHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCh--hHHHHHHHc---CC---C-EEEeCCCchHHHHH
Confidence 333467889999999997 55666666666543 2444444444 333333332 11 1 12221111111
Q ss_pred -CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 -KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 -~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+......+|+|+.+.. .. .+....++|+| ||++++.
T Consensus 232 ~~~~~~~~~D~vi~~~G-----~~----~~~~~~~~l~~-~G~iv~~ 268 (351)
T 1yb5_A 232 KKYVGEKGIDIIIEMLA-----NV----NLSKDLSLLSH-GGRVIVV 268 (351)
T ss_dssp HHHHCTTCEEEEEESCH-----HH----HHHHHHHHEEE-EEEEEEC
T ss_pred HHHcCCCCcEEEEECCC-----hH----HHHHHHHhccC-CCEEEEE
Confidence 0001236999987533 11 46778999999 9998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=3.3 Score=38.32 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=56.5
Q ss_pred hcCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc----CCC
Q 019282 176 ASHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF----TKF 249 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl----~~~ 249 (343)
...++++.+||-+|+| .|..+..+++......+.+++.+.. ..+.+++. +. . ..+.....+. .+.
T Consensus 165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~--~~~~~~~~---g~---~-~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE--AVEAAKRA---GA---D-YVINASMQDPLAEIRRI 235 (347)
T ss_dssp HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH--HHHHHHHH---TC---S-EEEETTTSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHHHh---CC---C-EEecCCCccHHHHHHHH
Confidence 3678899999999997 5666666666541234445554443 33333332 11 1 1122111121 111
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...+.+|+|+.... .. ..++...++|+| +|++++.
T Consensus 236 ~~~~~~d~vi~~~g-----~~---~~~~~~~~~l~~-~G~iv~~ 270 (347)
T 1jvb_A 236 TESKGVDAVIDLNN-----SE---KTLSVYPKALAK-QGKYVMV 270 (347)
T ss_dssp TTTSCEEEEEESCC-----CH---HHHTTGGGGEEE-EEEEEEC
T ss_pred hcCCCceEEEECCC-----CH---HHHHHHHHHHhc-CCEEEEE
Confidence 11147999986533 22 257888999999 9998764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.95 E-value=3.7 Score=37.92 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=56.0
Q ss_pred cCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----CCC
Q 019282 177 SHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----KFG 250 (343)
Q Consensus 177 ~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~~~ 250 (343)
..++++.+||-+|+ |.|..+..+++... ..+.+++.+. ...+.+++. +. . ..+.....++. +..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~--~~~~~~~~~---ga---~-~~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSE--DKLRRAKAL---GA---D-ETVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSH--HHHHHHHHH---TC---S-EEEETTSTTHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH--HHHHHHHhc---CC---C-EEEcCCcccHHHHHHHHh
Confidence 47788999999998 67777777777643 2444455444 333333332 21 1 11221111211 111
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+|+|+.... . . .++.+.+.|++ +|+++..
T Consensus 232 ~~~~~d~vi~~~g-~----~----~~~~~~~~l~~-~G~~v~~ 264 (343)
T 2eih_A 232 GGKGADKVVDHTG-A----L----YFEGVIKATAN-GGRIAIA 264 (343)
T ss_dssp TTTCEEEEEESSC-S----S----SHHHHHHHEEE-EEEEEES
T ss_pred CCCCceEEEECCC-H----H----HHHHHHHhhcc-CCEEEEE
Confidence 1247999987543 1 1 46778899999 9998764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=80.61 E-value=1.2 Score=41.34 Aligned_cols=100 Identities=10% Similarity=0.189 Sum_probs=57.4
Q ss_pred HHHhcCCC------CCCeEEEEc-CC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 173 LAEASHIT------PNSHVLEIG-CG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 173 l~~~~~l~------~~~rVLDIG-CG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
+.+...+. ++.+||=+| +| .|..+..+++.. +..++.++.+....+.+++.. . . ..+... .
T Consensus 136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~lG---a---~-~vi~~~-~ 204 (346)
T 3fbg_A 136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY---GLRVITTASRNETIEWTKKMG---A---D-IVLNHK-E 204 (346)
T ss_dssp HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEECCSHHHHHHHHHHT---C---S-EEECTT-S
T ss_pred HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhcC---C---c-EEEECC-c
Confidence 44456676 889999994 44 566777777754 335665565555555554422 1 1 111111 1
Q ss_pred Cc----CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 245 DF----TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 245 dl----~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++ .+. ..+.+|+|+-.. +.. ..++.+.++|+| +|+++..
T Consensus 205 ~~~~~~~~~-~~~g~Dvv~d~~-----g~~---~~~~~~~~~l~~-~G~iv~~ 247 (346)
T 3fbg_A 205 SLLNQFKTQ-GIELVDYVFCTF-----NTD---MYYDDMIQLVKP-RGHIATI 247 (346)
T ss_dssp CHHHHHHHH-TCCCEEEEEESS-----CHH---HHHHHHHHHEEE-EEEEEES
T ss_pred cHHHHHHHh-CCCCccEEEECC-----Cch---HHHHHHHHHhcc-CCEEEEE
Confidence 11 111 234699998642 222 257889999999 9999754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.55 E-value=1.3 Score=39.52 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=40.5
Q ss_pred CCceeEEEEccccccC-C-------c----hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 252 GVVYDLIYASAVFLHM-P-------D----KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl-~-------~----~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
+++||+|++.--+.-- . . ......|++++++|+| ||.+++.+. ++ ....+...+.+.||...
T Consensus 21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~-~g~i~v~~~-d~----~~~~~~~~~~~~gf~~~ 94 (260)
T 1g60_A 21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDK-DGSLYIFNT-PF----NCAFICQYLVSKGMIFQ 94 (260)
T ss_dssp TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEC-HH----HHHHHHHHHHHTTCEEE
T ss_pred ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcC-CeEEEEEcC-cH----HHHHHHHHHHhhcccee
Confidence 4578888876544211 0 0 1234578889999999 999988752 11 12345567788999765
Q ss_pred E
Q 019282 320 G 320 (343)
Q Consensus 320 ~ 320 (343)
.
T Consensus 95 ~ 95 (260)
T 1g60_A 95 N 95 (260)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=80.53 E-value=0.57 Score=43.60 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---
Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--- 247 (343)
+.+...++++.+||-+|+ |.|..+..+++..+. .+.+++.+.... +.+++. +. . ..+... .++.
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~--~~~~~~---ga---~-~v~~~~-~~~~~~v 219 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAAT--EFVKSV---GA---D-IVLPLE-EGWAKAV 219 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGH--HHHHHH---TC---S-EEEESS-TTHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH--HHHHhc---CC---c-EEecCc-hhHHHHH
Confidence 434567889999999997 567777778776543 455555544433 333332 11 1 112111 1211
Q ss_pred -CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 -KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 -~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+......+|+|+-...- . .+....++|+| ||++++.
T Consensus 220 ~~~~~~~g~Dvvid~~g~-----~----~~~~~~~~l~~-~G~iv~~ 256 (342)
T 4eye_A 220 REATGGAGVDMVVDPIGG-----P----AFDDAVRTLAS-EGRLLVV 256 (342)
T ss_dssp HHHTTTSCEEEEEESCC-----------CHHHHHHTEEE-EEEEEEC
T ss_pred HHHhCCCCceEEEECCch-----h----HHHHHHHhhcC-CCEEEEE
Confidence 11112369999864332 1 46778899999 9999864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=80.43 E-value=3.1 Score=38.44 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=55.9
Q ss_pred cCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-CC-CCC
Q 019282 177 SHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-FG-SGV 253 (343)
Q Consensus 177 ~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-~~-~~~ 253 (343)
.+++++.+||-+|+| .|..+..+++.. +..++.++.+....+.+++. +. . ..+.....++.+ .. ..+
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~l---Ga---~-~~~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAM---GLNVVAVDIGDEKLELAKEL---GA---D-LVVNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHT---TC---S-EEECTTTSCHHHHHHHHHS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHC---CC---C-EEecCCCccHHHHHHHHhC
Confidence 378899999999986 466666666654 33555555554444444432 21 1 112111111110 00 014
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+|+|+-.. +.. ..++...++|++ ||++++.
T Consensus 230 ~~d~vid~~-----g~~---~~~~~~~~~l~~-~G~~v~~ 260 (339)
T 1rjw_A 230 GVHAAVVTA-----VSK---PAFQSAYNSIRR-GGACVLV 260 (339)
T ss_dssp SEEEEEESS-----CCH---HHHHHHHHHEEE-EEEEEEC
T ss_pred CCCEEEECC-----CCH---HHHHHHHHHhhc-CCEEEEe
Confidence 689997643 221 267888999999 9998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 343 | ||||
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-08 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 8e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.002 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.002 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.002 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.004 |
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 50.0 bits (118), Expect = 6e-08
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 159 YGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218
+ E + R + LA A + P L++GCG G + + +
Sbjct: 9 FTEKYGLTRTHSDVLAAAKVVAP-GRTLDLGCGN---GRNSLYLAANGYDVTAWDKNPAS 64
Query: 219 MAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLER 278
MA ++GL + + +V + F YD I ++ V + + + + +
Sbjct: 65 MANLERIKAAEGLDNLQTDLVDLNTLTFDGE-----YDFILSTVVMMFLEAQTIPGLIAN 119
Query: 279 LASKLRPYDGRIFV 292
+ +P G +
Sbjct: 120 MQRCTKP-GGYNLI 132
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 9/127 (7%)
Query: 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL 226
+ + L + P + +L++G G+ + + R + A R E
Sbjct: 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE 78
Query: 227 PSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPY 286
+ K D+ E LA L+P
Sbjct: 79 LGVSERVHFIHNDAAGYVANEKC------DVAACVGATWIAGGFAGAE--ELLAQSLKP- 129
Query: 287 DGRIFVS 293
G + +
Sbjct: 130 GGIMLIG 136
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 10/128 (7%)
Query: 167 RDVFEFLA-EASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225
D FL IT H+++ GCG +G+ + L PE D + A E
Sbjct: 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLL-PEGSKYTGIDSGETLLAEARE 70
Query: 226 LPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRP 285
L + +++ YD+ A LHM L+++ ++
Sbjct: 71 LFRLLPYDSEFLEGDATEIELNDK-----YDIAICHAFLLHMTTP--ETMLQKMIHSVKK 123
Query: 286 YDGRIFVS 293
G+I
Sbjct: 124 -GGKIICF 130
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRY-LNPENFHCLERDELSLMAAFRYELPSQ 229
+L VL++ CGT + + + + ++ +
Sbjct: 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP 105
Query: 230 GLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVG-----LERLASKLR 284
+D +I F H+PD L+ +AS +R
Sbjct: 106 AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR 165
Query: 285 PYDGRIFVSH 294
P G + + H
Sbjct: 166 P-GGLLVIDH 174
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 13/129 (10%)
Query: 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQ 229
+ I P VLE G G+ + + + + + E + A + +
Sbjct: 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY---K 144
Query: 230 GLLHKRPIIVRGEDMDFTKFGSGVVYDLIY------ASAVFLHMPDKLVWVGLERLASKL 283
+ E D F + AV L M + V L L
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HVTLPVFYPHL 202
Query: 284 RPYDGRIFV 292
+ G V
Sbjct: 203 KH-GGVCAV 210
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 37.8 bits (86), Expect = 8e-04
Identities = 17/171 (9%), Positives = 43/171 (25%), Gaps = 21/171 (12%)
Query: 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFR--------YELPSQ 229
++ P + VL CG + + E E ++ F
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDF 74
Query: 230 GLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR 289
+ I + D Y A + +P + ++ L + +
Sbjct: 75 KVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACS 133
Query: 290 IFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEFRR 340
+ + L G + + ++ ++E+ +
Sbjct: 134 GLLITLEYDQALLEGPPF----------SVPQTWLHRVMSGNWEVTKVGGQ 174
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (87), Expect = 0.002
Identities = 34/255 (13%), Positives = 73/255 (28%), Gaps = 34/255 (13%)
Query: 50 TDAANAVRNGAVSDFARSEDDSSSSSRRFSERTSATKEDIEWVRDQIHKNGLHMQDNVLR 109
+ A ++ + D S D+S + A + + +I + + D++
Sbjct: 107 SPYAEQLKETILPDLNASFDNSDTKGFVN-----AINLYNKMI-REIPRQRI--IDHLET 158
Query: 110 KGINPRTRAQQLQDLIQFKGISHYEGLEANNHTALPCPGELLVEEHHSN--YGE-PWAGG 166
PR+ ++ + I P +L + SN YGE
Sbjct: 159 IDKIPRSFIHDFLHIVYTRSIH-------------PQANKLKHYKAFSNYVYGELLPNFL 205
Query: 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLE-RDELSLMAAFRYE 225
DV++ + +++G G V E D+ S + +YE
Sbjct: 206 SDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE 261
Query: 226 LPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASK--- 282
+ + E F + + + + L L + K
Sbjct: 262 ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQ 321
Query: 283 -LRPYDGRIFVSHNI 296
+ +I ++
Sbjct: 322 TAKV-GCKIISLKSL 335
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 36.6 bits (84), Expect = 0.002
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 13/132 (9%)
Query: 172 FLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQG 230
++ + P +LE+G G+ + + + LN + +ERDE +L A L
Sbjct: 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKA-MDNLSEFY 134
Query: 231 LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRI 290
+ + AV +PD W ++++AS ++P
Sbjct: 135 DIGNVRTSRSDIADFISDQ---------MYDAVIADIPDP--WNHVQKIASMMKPGSVAT 183
Query: 291 FVSHNIKFCSRL 302
F N +
Sbjct: 184 FYLPNFDQSEKT 195
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.5 bits (83), Expect = 0.002
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 11/132 (8%)
Query: 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYE 225
G D+ + L + + + N VL++ G V F ++ + E L A +
Sbjct: 1 GSDLAK-LMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFI 57
Query: 226 LPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRP 285
+ + + + + ++ H P+ + L+
Sbjct: 58 EGNGHQQVEYVQGDAEQMPFTDER-----FHIVTCRIAAHHFPNP--ASFVSEAYRVLKK 110
Query: 286 YDGRIFVSHNIK 297
G++ + N
Sbjct: 111 -GGQLLLVDNSA 121
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 36.1 bits (82), Expect = 0.004
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ 229
+ + + VL+IG G + F Y+ ++ + S
Sbjct: 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATK-----EMVEVASSF 57
Query: 230 GLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGR 289
+ + + +D+I H D + +A L+ DGR
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA--VREVARVLKQ-DGR 114
Query: 290 IFVS 293
+
Sbjct: 115 FLLV 118
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 343 | |||
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.84 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.81 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.75 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.75 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.74 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.71 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.7 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.7 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.66 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.65 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.63 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.62 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.59 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.59 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.57 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.56 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.47 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.45 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.45 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.43 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.42 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.41 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.38 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.38 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.38 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.31 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.27 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.23 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.23 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.13 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.12 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.09 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.05 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.02 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.86 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.84 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.74 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.74 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.71 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.69 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.66 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.64 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.61 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.6 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.59 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.58 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.51 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.4 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.39 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.32 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.25 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.17 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.15 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.08 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.07 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.03 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.01 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.99 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.97 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.92 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.91 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.9 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.84 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.79 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.77 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.74 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.74 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.71 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.65 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.55 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.5 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.39 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.25 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.21 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.39 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.08 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.04 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.96 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.7 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.36 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.34 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.18 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.01 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.61 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.39 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.23 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.2 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.11 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.79 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.75 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.52 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.34 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.08 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.01 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.91 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 90.75 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.99 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.41 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 86.43 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.29 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.36 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 85.19 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.16 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 83.85 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.85 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.51 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.5 |
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=1e-20 Score=174.65 Aligned_cols=149 Identities=14% Similarity=0.134 Sum_probs=111.4
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
.+.++++.+++.+.+++|.+|||||||+|.++.++++..+. .+++++.+..+.+.++++.. .++ ...+....
T Consensus 36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l-~~~~~~~~--- 108 (280)
T d2fk8a1 36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDT-NRSRQVLL--- 108 (280)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCC-SSCEEEEE---
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhcc-ccchhhhh---
Confidence 36778999999999999999999999999999999887543 45555666666666655443 344 32444433
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----------------------ccccC
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----------------------KFCSR 301 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----------------------~~~~~ 301 (343)
.+..++ +++||.|++..+++|++++....+|++++++||| ||++++.... +++..
T Consensus 109 ~d~~~~--~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp-gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~k 185 (280)
T d2fk8a1 109 QGWEDF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVT 185 (280)
T ss_dssp SCGGGC--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhh--ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCC-CceEEEEEeeccCcchhhhcccccccccccccchhhh
Confidence 344433 4789999999999999988888899999999999 9999985210 12111
Q ss_pred --------CCHHHHHHHHHhcCCcEEEeee
Q 019282 302 --------LGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 302 --------~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
.+.+++.+.++++||+++....
T Consensus 186 yifPgg~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 186 EIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp HTSTTCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred hccCCCcccchHhhhhhHHhhccccceeee
Confidence 1378888999999999877654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=9.6e-21 Score=175.10 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=115.7
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
.+.++.+.+++.+.+++|.+|||||||+|..+.++++..+ +.+++++.+..+.+.++++.. .++.+ ++.+..+
T Consensus 46 AQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g---~~v~git~s~~Q~~~a~~~~~~~g~~~-~v~~~~~-- 119 (285)
T d1kpga_ 46 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLR-SKRVLLA-- 119 (285)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCS-CEEEEES--
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC---cceEEEeccHHHHHHHHHHHHhhhhhh-hhHHHHh--
Confidence 4778999999999999999999999999999999998754 457777777777777766543 44433 5555544
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----------------------ccccC
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----------------------KFCSR 301 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----------------------~~~~~ 301 (343)
|+.++ +++||.|+++.+++|++.+....+|+++.++||| ||++++..-. +|+..
T Consensus 120 -d~~~~--~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp-gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~k 195 (285)
T d1kpga_ 120 -GWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVT 195 (285)
T ss_dssp -CGGGC--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred -hhhcc--cccccceeeehhhhhcCchhHHHHHHHHHhhcCC-CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHH
Confidence 55433 4689999999999999887667799999999999 9999875210 11111
Q ss_pred --------CCHHHHHHHHHhcCCcEEEeeec
Q 019282 302 --------LGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 302 --------~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.+.+++...++++||+++..+..
T Consensus 196 yiFpgg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 196 EIFPGGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred HhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence 12788888999999999887654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=2.9e-20 Score=164.92 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=105.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
..+.+..+++++.+|||||||+|.++..+++.. ..++++|++..+.+.+++... .+. .++.+..++..+++ +
T Consensus 5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~----~~v~gvD~s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~-~ 77 (231)
T d1vl5a_ 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV----KKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMP-F 77 (231)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCC-S
T ss_pred HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhC----CEEEEEECCHHHHhhhhhccccccc--cccccccccccccc-c
Confidence 345556799999999999999999999998753 345555555566665555433 332 35667777555554 3
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--------------------cccccCCCHHHHHH
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--------------------IKFCSRLGGEECTK 309 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--------------------~~~~~~~~~~~l~~ 309 (343)
++++||+|++..++||++++.. +|++++++||| ||++++... ..+...+..+++.+
T Consensus 78 -~~~~fD~v~~~~~l~~~~d~~~--~l~~~~r~Lkp-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 78 -TDERFHIVTCRIAAHHFPNPAS--FVSEAYRVLKK-GGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp -CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred -cccccccccccccccccCCHHH--HHHHHHHhcCC-CcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 4689999999999999999876 99999999999 999988621 11223344889999
Q ss_pred HHHhcCCcEEEeeec
Q 019282 310 RLTSLGLEYIGKKTH 324 (343)
Q Consensus 310 ~L~~aGf~~v~~~~~ 324 (343)
.|+++||++++.+.+
T Consensus 154 ~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 154 MLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCEEEEEEEe
Confidence 999999998876653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=4e-20 Score=171.35 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=112.1
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEeccc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGED 243 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~ 243 (343)
.++++++.+++.+.+++|.+|||||||+|.++.++++..+ +.+++++.+..+.+.++++.. .++. .++.+..
T Consensus 45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g---~~v~git~s~~q~~~a~~~~~~~~l~-~~v~~~~--- 117 (291)
T d1kpia_ 45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRI--- 117 (291)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHSCCS-SCEEEEE---
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC---cceeeccchHHHHHHHHHHHHhhccc-hhhhhhh---
Confidence 3678899999999999999999999999999999998765 346666666676666665544 4443 3444443
Q ss_pred CCcCCCCCCCceeEEEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEec---c-----------------
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHN---I----------------- 296 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~---~----------------- 296 (343)
.++.. .+++||.|++..+++|+++ +..+.+|+++.++||| ||++++..- .
T Consensus 118 ~d~~~--~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp-gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~ 194 (291)
T d1kpia_ 118 QGWEE--FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHTITIPDKEEAQELGLTSPMSLLR 194 (291)
T ss_dssp CCGGG--CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT-TCEEEEEEEECCCHHHHHHHTCCCCHHHHH
T ss_pred hcccc--cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC-CCceEEEEEeccCcchhhhccCCCchhhcc
Confidence 34442 3579999999999999987 3456799999999999 999987521 0
Q ss_pred --ccccC--------CCHHHHHHHHHhcCCcEEEeeec
Q 019282 297 --KFCSR--------LGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 297 --~~~~~--------~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
+|+.. .+.+++...++++||+++..+..
T Consensus 195 ~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 195 FIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred cchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence 11111 12788889999999998876654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=7.7e-20 Score=163.35 Aligned_cols=158 Identities=17% Similarity=0.319 Sum_probs=114.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
...+++.+..+++|+.||||||||+|.++..+++.. ..++++|++..|.+.++++.. .+. .++.++.++..++
T Consensus 3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~----~~v~gvD~S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV----QECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBC
T ss_pred hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC----CeEEEEeCChhhhhhhhhhhccccc--ccccccccccccc
Confidence 356778888999999999999999999999998853 245666666666666655433 233 2577777766655
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc--------------------ccccCCCHHH
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI--------------------KFCSRLGGEE 306 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~--------------------~~~~~~~~~~ 306 (343)
+ + ++++||+|+|..+++|++++.. +|++++++||| ||++++.... .+...+...+
T Consensus 77 ~-~-~~~~fD~v~~~~~l~~~~d~~~--~l~~~~r~Lkp-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 77 P-F-PDDSFDIITCRYAAHHFSDVRK--AVREVARVLKQ-DGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp C-S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred c-c-cccccceeeeeceeecccCHHH--HHHHHHHeeCC-CcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHH
Confidence 4 3 4789999999999999998766 99999999999 9999886211 1122233788
Q ss_pred HHHHHHhcCCcEEEeeeccccccchhHHhhhh
Q 019282 307 CTKRLTSLGLEYIGKKTHDSLLFNHYEIWFEF 338 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~~~~l~~~~~e~w~~~ 338 (343)
+..+++++||.+.....++. ...+..|...
T Consensus 152 ~~~~~~~~gf~~~~~~~~~~--~~~~~~w~~~ 181 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQKWNL--PIQYDSWIKR 181 (234)
T ss_dssp HHHHHHHTTEEEEEEEEEEE--EEEHHHHHHH
T ss_pred HHHHHHHCCCceeEEEEeeC--ccCHHHHHHH
Confidence 99999999998876554322 2235556543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.1e-19 Score=163.60 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
....++.+.+.+.+.|+.+|||||||+|.++..+++..+ ..++++|+++.+.+.+++........+++.+..++..+
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~---~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC---CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence 456788888899999999999999999999999988643 35667777777777666654433334467777764444
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----------------ccccCCCHHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----------------KFCSRLGGEECT 308 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----------------~~~~~~~~~~l~ 308 (343)
+ ..+++||+|++..+++|+++... ++++++++||| ||++++.... ......+...+.
T Consensus 95 ~---~~~~~fD~v~~~~~~~~~~d~~~--~l~~~~r~LkP-GG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (245)
T d1nkva_ 95 Y---VANEKCDVAACVGATWIAGGFAG--AEELLAQSLKP-GGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLV 168 (245)
T ss_dssp C---CCSSCEEEEEEESCGGGTSSSHH--HHHHHTTSEEE-EEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHH
T ss_pred c---cccCceeEEEEEehhhccCCHHH--HHHHHHHHcCc-CcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHH
Confidence 3 35789999999999999998766 99999999999 9999987311 111122377889
Q ss_pred HHHHhcCCcEEEeeecccccc
Q 019282 309 KRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l~~ 329 (343)
..++++||+++.....+...|
T Consensus 169 ~~~~~aG~~~v~~~~~~~~~~ 189 (245)
T d1nkva_ 169 GAFDDLGYDVVEMVLADQEGW 189 (245)
T ss_dssp HHHHTTTBCCCEEEECCHHHH
T ss_pred HHHHHcCCEEEEEEeCCHHHH
Confidence 999999999887665544333
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=2.7e-19 Score=164.32 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+.+.+....+++++.+|||||||+|.++..+++.++ ..++++|+++.+.+.++++.. .++. .++.+..++..+
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~ 128 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLE 128 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC---cEEEEEeccchhhhhhhccccccccc-cccccccccccc
Confidence 34556666667899999999999999999999998653 345555556566655555433 4443 377788776666
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------c---------ccC-CCHHHHH
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------F---------CSR-LGGEECT 308 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------~---------~~~-~~~~~l~ 308 (343)
++ + ++++||+|++..+++|++++.. +|++++++||| ||++++..... . ... .+.+++.
T Consensus 129 l~-~-~~~sfD~V~~~~~l~h~~d~~~--~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 203 (282)
T d2o57a1 129 IP-C-EDNSYDFIWSQDAFLHSPDKLK--VFQECARVLKP-RGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYR 203 (282)
T ss_dssp CS-S-CTTCEEEEEEESCGGGCSCHHH--HHHHHHHHEEE-EEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHH
T ss_pred cc-c-cccccchhhccchhhhccCHHH--HHHHHHHhcCC-CcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHH
Confidence 54 3 4689999999999999998766 99999999999 99998873100 0 011 2378889
Q ss_pred HHHHhcCCcEEEeeeccccccchhH
Q 019282 309 KRLTSLGLEYIGKKTHDSLLFNHYE 333 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~~~~l~~~~~e 333 (343)
++++++||+.+...........+|.
T Consensus 204 ~~l~~~Gf~~i~~~d~~~~~~~~~~ 228 (282)
T d2o57a1 204 SLAKECGLVTLRTFSRPDSLVHHYS 228 (282)
T ss_dssp HHHHHTTEEEEEEEECHHHHHHHHH
T ss_pred HHHHHcCCceEEEEECcHhHHHHHH
Confidence 9999999998887654433333343
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=7.3e-19 Score=155.90 Aligned_cols=151 Identities=20% Similarity=0.181 Sum_probs=106.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
...++.+|||||||+|+++..++.... . .++++|.++.+.+.++++...... .+..+.+++..++. + .+++||+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~--~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~-~-~~~~fD~ 130 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLF-R--EVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFT-P-EPDSYDV 130 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTC-S--EEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCC-C-CSSCEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcC-C--EEEEeecCHHHhhccccccccccc-cccccccccccccc-c-ccccccc
Confidence 456678999999999999988765332 2 355555555666655554332111 23456666444443 2 3679999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------cccCCCHHHHHHHHHhcCCcEEEeeecccc
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------FCSRLGGEECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------~~~~~~~~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
|++..+++|++++....+|++++++||| ||.+++..... ....++.+++.++++++||+++..+....+
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~f 209 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRP-NGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQENL 209 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred cccccccccchhhhhhhHHHHHHHhcCC-cceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCCC
Confidence 9999999999998777799999999999 99999873211 111124889999999999999988876666
Q ss_pred ccchhHHh
Q 019282 328 LFNHYEIW 335 (343)
Q Consensus 328 ~~~~~e~w 335 (343)
+...|.+|
T Consensus 210 P~~~~~v~ 217 (222)
T d2ex4a1 210 PDEIYHVY 217 (222)
T ss_dssp CTTSCEEE
T ss_pred CcchhEEE
Confidence 66656555
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.75 E-value=3.7e-18 Score=154.95 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=108.6
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
..+.+.+...++.+|||+|||+|+++..++.... .. ++++|++..+.+.+++... + ..++.+..++..+++ +
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~--v~~vD~s~~~l~~a~~~~~-~--~~~~~~~~~d~~~~~-~- 154 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-AT--TDLLEPVKHMLEEAKRELA-G--MPVGKFILASMETAT-L- 154 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SE--EEEEESCHHHHHHHHHHTT-T--SSEEEEEESCGGGCC-C-
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ce--EEEEcCCHHHHHhhhcccc-c--cccceeEEccccccc-c-
Confidence 3444456667788999999999999998876443 23 4455555566665554322 1 123455555433333 2
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----c-------ccCCCHHHHHHHHHhcCCcEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----F-------CSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----~-------~~~~~~~~l~~~L~~aGf~~v 319 (343)
.+++||+|++..+++|+++++...+|++++++||| ||.+++.+... + ...++.+.+.++++++||+++
T Consensus 155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp-gG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTP-NGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred CCCccceEEeeccccccchhhhHHHHHHHHHhcCC-CcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence 36799999999999999998877899999999999 99999864211 1 111247889999999999999
Q ss_pred EeeeccccccchhHHh
Q 019282 320 GKKTHDSLLFNHYEIW 335 (343)
Q Consensus 320 ~~~~~~~l~~~~~e~w 335 (343)
+......++..-|.+|
T Consensus 234 ~~~~q~~fP~~l~~V~ 249 (254)
T d1xtpa_ 234 KEAFQEEWPTDLFPLK 249 (254)
T ss_dssp EEEECTTCCTTSCCEE
T ss_pred EEEeeCCCCccceEEE
Confidence 8776555555445443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.74 E-value=8.8e-18 Score=148.98 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=105.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||||..+..+++.....++.++++|.++.|.+.++++........+..+..+ +..+++ ...+|+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~---d~~~~~-~~~~d~ 111 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVE-IKNASM 111 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS---CTTTCC-CCSEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc---hhhccc-ccccee
Confidence 3678899999999999999999987665677888888888888888765443222334444443 444443 458999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------c---------------cc
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------------F---------------CS 300 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------------~---------------~~ 300 (343)
|++..++||++.++...+|++++++||| ||.+++.+... + ..
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~Lkp-gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMR 190 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEE-EEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCC
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCC-CceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccC
Confidence 9999999999877777899999999999 99998862100 0 12
Q ss_pred CCCHHHHHHHHHhcCCcEEEee
Q 019282 301 RLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 301 ~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
.++.+++.++|+++||+.++.-
T Consensus 191 ~~s~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 191 TDSIETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCceEEe
Confidence 2347889999999999988753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.71 E-value=2.7e-17 Score=146.03 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+++. +..++++|+++.+.+.+++.. ...+.++.++ +.+...+++||+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~----g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~---~~~~~~~~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH----FNDITCVEASEEAISHAQGRL-----KDGITYIHSR---FEDAQLPRRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT----CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESC---GGGCCCSSCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc----CCeEEEEeCcHHHhhhhhccc-----cccccccccc---cccccccccccccc
Confidence 45668999999999999988773 334566666666666665432 1245666653 33334568999999
Q ss_pred EccccccCCchHHHHHHHHHH-hccCCCCcEEEEEecc----------------------------ccccCCCHHHHHHH
Q 019282 260 ASAVFLHMPDKLVWVGLERLA-SKLRPYDGRIFVSHNI----------------------------KFCSRLGGEECTKR 310 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~-r~LkP~GG~lvi~~~~----------------------------~~~~~~~~~~l~~~ 310 (343)
+..+++|++++.. +|.+++ ++||| ||.+++..+. .+...++.+++.+.
T Consensus 87 ~~~vleh~~d~~~--~l~~i~~~~Lk~-gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~ 163 (225)
T d2p7ia1 87 LTHVLEHIDDPVA--LLKRINDDWLAE-GGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERD 163 (225)
T ss_dssp EESCGGGCSSHHH--HHHHHHHTTEEE-EEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHH
T ss_pred ccceeEecCCHHH--HHHHHHHHhcCC-CceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHH
Confidence 9999999999876 899998 89999 9999987310 01234558999999
Q ss_pred HHhcCCcEEEeee
Q 019282 311 LTSLGLEYIGKKT 323 (343)
Q Consensus 311 L~~aGf~~v~~~~ 323 (343)
++++||+++....
T Consensus 164 l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 164 ASRAGLQVTYRSG 176 (225)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHCCCEEEEEEE
Confidence 9999999988664
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.70 E-value=2e-16 Score=143.00 Aligned_cols=147 Identities=26% Similarity=0.238 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl~ 247 (343)
..+.+.+..++.+..+|||||||+|.++..+++.++....+++|+.. . .+.+++. ...+. ..++.++.+ |+.
T Consensus 68 ~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~-~--~~~a~~~~~~~~~-~~rv~~~~~---D~~ 140 (253)
T d1tw3a2 68 AFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG-T--VDTARSYLKDEGL-SDRVDVVEG---DFF 140 (253)
T ss_dssp TTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT-H--HHHHHHHHHHTTC-TTTEEEEEC---CTT
T ss_pred HHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHH-H--HHHHHHHHHHhhc-ccchhhccc---cch
Confidence 34456666788888999999999999999999988777666666532 2 2323333 23444 346777766 333
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecccc---------------------ccCCCHHH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKF---------------------CSRLGGEE 306 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~---------------------~~~~~~~~ 306 (343)
+. ....||+|++..++||++++....+|++++++||| ||+++|...... ...++.++
T Consensus 141 ~~-~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkP-GG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e 218 (253)
T d1tw3a2 141 EP-LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP-GGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREK 218 (253)
T ss_dssp SC-CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE-EEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHH
T ss_pred hh-cccchhheeeccccccCCchhhHHHHHHHHHhcCC-CcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHH
Confidence 22 23579999999999999998877899999999999 999998732110 01234899
Q ss_pred HHHHHHhcCCcEEEeeec
Q 019282 307 CTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~~ 324 (343)
+.++++++||++++.+..
T Consensus 219 ~~~ll~~AGf~~~~v~~~ 236 (253)
T d1tw3a2 219 WDGLAASAGLVVEEVRQL 236 (253)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEEC
Confidence 999999999999886653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=1.4e-16 Score=142.58 Aligned_cols=113 Identities=13% Similarity=0.219 Sum_probs=84.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~ 248 (343)
+..+......++..+|||||||||..+..+++ .+..++++|.++.|...++++.. .+. ++.+..++..+++
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~----~~~~v~gvD~s~~mi~~a~~~~~~~~~---~i~~~~~d~~~l~- 101 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIA- 101 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCC-
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcc----cceEEEEEeeccccccccccccccccc---cchheehhhhhcc-
Confidence 44444455677788999999999999999998 34456666666677776665533 232 5677777544443
Q ss_pred CCCCCceeEEEEc-cccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYAS-AVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~-~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++.||+|++. .+++|+..++...+|++++++||| ||++++.
T Consensus 102 --~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp-gG~lii~ 144 (251)
T d1wzna1 102 --FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFITD 144 (251)
T ss_dssp --CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred --cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 45789999996 688888767777899999999999 9999873
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=5.7e-17 Score=141.48 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIY 259 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIv 259 (343)
.++.+|||||||+|.++..+.+ ++++|.++.+.+.+++. .+.++.++..+++ + .+++||+|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~~--------~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~-~-~~~~fD~I~ 96 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLKI--------KIGVEPSERMAEIARKR--------GVFVLKGTAENLP-L-KDESFDFAL 96 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHTC--------CEEEESCHHHHHHHHHT--------TCEEEECBTTBCC-S-CTTCEEEEE
T ss_pred CCCCeEEEECCCCcccccccce--------EEEEeCChhhccccccc--------ccccccccccccc-c-ccccccccc
Confidence 4567899999999999877643 24455555666665541 3456666555554 2 367999999
Q ss_pred EccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------------------ccccCCCHHHHHHHHHhcCCcEEE
Q 019282 260 ASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------------------KFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 260 s~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------------------~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+..+++|++++.. +|++++++|+| ||.+++.... .....++.+++.++|+++||++++
T Consensus 97 ~~~~l~h~~d~~~--~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 97 MVTTICFVDDPER--ALKEAYRILKK-GGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp EESCGGGSSCHHH--HHHHHHHHEEE-EEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccccccccccc--chhhhhhcCCC-CceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 9999999998765 99999999999 9999887311 111223589999999999999887
Q ss_pred eee
Q 019282 321 KKT 323 (343)
Q Consensus 321 ~~~ 323 (343)
...
T Consensus 174 v~~ 176 (208)
T d1vlma_ 174 VVQ 176 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.7e-16 Score=136.61 Aligned_cols=132 Identities=15% Similarity=0.250 Sum_probs=91.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.+.+ .+|||||||+|..+..+++. ++.++++|.+..+.+.+++... .+. . ++.+.. .|+.....+++||
T Consensus 28 ~~~~-grvLDiGcG~G~~~~~la~~----g~~v~gvD~s~~~l~~a~~~~~~~~~-~-~~~~~~---~d~~~~~~~~~fD 97 (198)
T d2i6ga1 28 VVAP-GRTLDLGCGNGRNSLYLAAN----GYDVTAWDKNPASMANLERIKAAEGL-D-NLQTDL---VDLNTLTFDGEYD 97 (198)
T ss_dssp TSCS-CEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTC-T-TEEEEE---CCTTTCCCCCCEE
T ss_pred cCCC-CcEEEECCCCCHHHHHHHHH----hhhhccccCcHHHHHHHHHHhhhccc-c-chhhhh---eeccccccccccc
Confidence 4444 59999999999999999983 4556666666666665554433 333 2 333433 3555455678999
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc---------cccCCCHHHHHHHHHhcCCcEEEee
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK---------FCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~---------~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+|++..+++|+++.....++++++++|+| ||++++..... +...+...++.+.+ +||+++...
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~ 169 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKP-GGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLKYN 169 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEE-EEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCC-CcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEEee
Confidence 99999999999988888899999999999 99998863111 11112255666666 588877543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.7e-16 Score=139.09 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=81.0
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|.++..+++. +..++++|.+..+.+.++++..... ..+..+.++..+++ + .+++||+
T Consensus 34 ~l~~~~~ILDiGcG~G~~~~~la~~----~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~-~-~~~~fD~ 105 (226)
T d1ve3a1 34 YMKKRGKVLDLACGVGGFSFLLEDY----GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS-F-EDKTFDY 105 (226)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC-S-CTTCEEE
T ss_pred hcCCCCEEEEECCCcchhhhhHhhh----hcccccccccccchhhhhhhhcccc--cccccccccccccc-c-cCcCceE
Confidence 4678889999999999999999983 3445666666666666655433211 14455655445543 2 4679999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
|++..+++|+++.+...+|+++.++||| ||++++..
T Consensus 106 I~~~~~l~~~~~~d~~~~l~~i~~~Lkp-gG~lii~~ 141 (226)
T d1ve3a1 106 VIFIDSIVHFEPLELNQVFKEVRRVLKP-SGKFIMYF 141 (226)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEEecchhhCChhHHHHHHHHHHHHcCc-CcEEEEEE
Confidence 9999999999877777799999999999 99998874
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.66 E-value=1.3e-16 Score=136.54 Aligned_cols=148 Identities=10% Similarity=0.030 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCC-----------CCCcE
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLL-----------HKRPI 237 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~-----------~~~~~ 237 (343)
+.+.+. .+.++|+.+|||+|||+|+.+..|++ .++.++++|.+..+.+.++++...... .....
T Consensus 9 ~~~~~~-~l~~~~~~rvLd~GCG~G~~a~~la~----~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 9 LQQYWS-SLNVVPGARVLVPLCGKSQDMSWLSG----QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHH-HHCCCTTCEEEETTTCCSHHHHHHHH----HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHH-HcCCCCCCEEEEecCcCCHHHHHHHH----cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 334343 36889999999999999999999998 467788888888888877664432110 11234
Q ss_pred EEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-c----c--cCCCHHHHHHH
Q 019282 238 IVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-F----C--SRLGGEECTKR 310 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~----~--~~~~~~~l~~~ 310 (343)
+..++..++... ....||+|++..+++|+++.....++++++++||| ||.+++..... . . .....+++.+.
T Consensus 84 ~~~~d~~~l~~~-~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp-gG~l~l~~~~~~~~~~~~p~~~~~~~el~~l 161 (201)
T d1pjza_ 84 IWCGDFFALTAR-DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLITLEYDQALLEGPPFSVPQTWLHRV 161 (201)
T ss_dssp EEEECCSSSTHH-HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEEEESSCSSSSSSCCCCCCHHHHHHT
T ss_pred eecccccccccc-cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC-CcEEEEEEcccccccCCCccccCCHHHHHHH
Confidence 444433333211 24679999999999999988888899999999999 99987763211 1 0 11236777665
Q ss_pred HHhcCCcEEEeeec
Q 019282 311 LTSLGLEYIGKKTH 324 (343)
Q Consensus 311 L~~aGf~~v~~~~~ 324 (343)
+ ..+|++......
T Consensus 162 ~-~~~~~i~~~~~~ 174 (201)
T d1pjza_ 162 M-SGNWEVTKVGGQ 174 (201)
T ss_dssp S-CSSEEEEEEEES
T ss_pred h-CCCcEEEEEEEe
Confidence 5 467776544433
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=4e-16 Score=143.18 Aligned_cols=151 Identities=23% Similarity=0.303 Sum_probs=101.9
Q ss_pred HHHHHHHHh-cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEA-SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~-~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+..+++.+. ..+.++.+|||||||+|.++..+++.++. +..++++|.++.+.+.+++..... ..++.+..++ +
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~-~~~v~giD~s~~~l~~a~~~~~~~--~~~~~f~~~d---~ 86 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLL--PYDSEFLEGD---A 86 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCT-TCEEEEEECCHHHHHHHHHHHHSS--SSEEEEEESC---T
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCC-CCEEEEEecchhHhhhhhcccccc--cccccccccc---c
Confidence 445656544 35677889999999999999999887653 233444455555555555443321 1145566553 3
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc------c------c---------------
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK------F------C--------------- 299 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~------~------~--------------- 299 (343)
.+++..++||+|++..++||++++.. +|++++++||| ||.+++....- + .
T Consensus 87 ~~~~~~~~fD~v~~~~~l~~~~d~~~--~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (281)
T d2gh1a1 87 TEIELNDKYDIAICHAFLLHMTTPET--MLQKMIHSVKK-GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFES 163 (281)
T ss_dssp TTCCCSSCEEEEEEESCGGGCSSHHH--HHHHHHHTEEE-EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHH
T ss_pred ccccccCCceEEEEehhhhcCCCHHH--HHHHHHHHcCc-CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHH
Confidence 33334568999999999999999876 99999999999 99998863110 0 0
Q ss_pred --cCCC-----HHHHHHHHHhcCCcEEEeeecccc
Q 019282 300 --SRLG-----GEECTKRLTSLGLEYIGKKTHDSL 327 (343)
Q Consensus 300 --~~~~-----~~~l~~~L~~aGf~~v~~~~~~~l 327 (343)
...+ ..++..+|+++||+.+..+..+.+
T Consensus 164 ~~~~~~~~~~i~~~l~~~l~eaGf~~i~~~~~~~v 198 (281)
T d2gh1a1 164 DTQRNGKDGNIGMKIPIYLSELGVKNIECRVSDKV 198 (281)
T ss_dssp HHHTTCCCTTGGGTHHHHHHHTTCEEEEEEECCCC
T ss_pred HHHHcCCCCCHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 0000 245677899999999987765543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.65 E-value=9.4e-16 Score=138.97 Aligned_cols=148 Identities=24% Similarity=0.212 Sum_probs=107.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc-ccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL-PSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~-~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
...+.+..++.+..+|||||||+|.++..+++++|...++++|+. . +...+++. ...+.. .++.++.+ ++.+
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp--~-~~~~a~~~~~~~~~~-~ri~~~~~---d~~~ 142 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA--G-PAERARRRFADAGLA-DRVTVAEG---DFFK 142 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH--H-HHHHHHHHHHHTTCT-TTEEEEEC---CTTS
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh--H-HHHHHHHHHhhcCCc-ceeeeeee---eccc
Confidence 445555677888889999999999999999999887766666652 2 22323332 334443 36666655 3332
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc----------------------cccCCCHHH
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK----------------------FCSRLGGEE 306 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~----------------------~~~~~~~~~ 306 (343)
. .+..||+|++..++||++++....+|++++++||| ||+++|.+... -...++.++
T Consensus 143 ~-~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp-gG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e 220 (256)
T d1qzza2 143 P-LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP-GGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDE 220 (256)
T ss_dssp C-CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred c-ccccchhhhccccccccCcHHHHHHHHHHHhhcCC-cceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHH
Confidence 2 23469999999999999998887899999999999 99999874210 012245899
Q ss_pred HHHHHHhcCCcEEEeeeccc
Q 019282 307 CTKRLTSLGLEYIGKKTHDS 326 (343)
Q Consensus 307 l~~~L~~aGf~~v~~~~~~~ 326 (343)
+.++++++||++++.+....
T Consensus 221 ~~~ll~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 221 VVDLAGSAGLALASERTSGS 240 (256)
T ss_dssp HHHHHHTTTEEEEEEEEECC
T ss_pred HHHHHHHCCCceeEEEEeCC
Confidence 99999999999998776443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=1.7e-15 Score=135.31 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHHHHHH---hcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 168 DVFEFLAE---ASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 168 ~~~~~l~~---~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
.+...|.. .++++||.+|||+|||+|..+.++++..+...++++|+++.+... ++++... ..++..+.++..
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~--a~~~a~~---~~ni~~i~~d~~ 132 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE--LLDACAE---RENIIPILGDAN 132 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH--HHHHTTT---CTTEEEEECCTT
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHH--HHHHHhh---hcccceEEEeec
Confidence 44444543 356899999999999999999999998776656666666554444 3433222 124455555444
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-----HHHHHHHHHhcCCcEE
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-----GEECTKRLTSLGLEYI 319 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-----~~~l~~~L~~aGf~~v 319 (343)
+...+ .+..+|++++...++|..+... ++.++++.||| ||.+++........... .++..+.|+++||+++
T Consensus 133 ~~~~~-~~~~~~v~~i~~~~~~~~~~~~--~l~~~~r~LKp-gG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 133 KPQEY-ANIVEKVDVIYEDVAQPNQAEI--LIKNAKWFLKK-GGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp CGGGG-TTTCCCEEEEEECCCSTTHHHH--HHHHHHHHEEE-EEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred cCccc-ccccceeEEeeccccchHHHHH--HHHHHHHhccc-CceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 44434 3567888888778877776655 89999999999 99999875333222222 4566788999999999
Q ss_pred Eeeeccccccchh
Q 019282 320 GKKTHDSLLFNHY 332 (343)
Q Consensus 320 ~~~~~~~l~~~~~ 332 (343)
+.....++-.+|+
T Consensus 209 e~idL~py~~~H~ 221 (230)
T d1g8sa_ 209 DEVDIEPFEKDHV 221 (230)
T ss_dssp EEEECTTTSTTEE
T ss_pred EEecCCCCcCCeE
Confidence 8776666555553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.63 E-value=1.3e-15 Score=136.30 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
.++.+|||||||+|+++..+++ .+..++++|.++.|.+.++++.. .+. ++.++.++..+ +...++||+|
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~----~g~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~~---~~~~~~fD~i 105 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISN---LNINRKFDLI 105 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGG----GSSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGG---CCCSCCEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHH----hCCccEeeccchhhhhhccccccccCc---cceeeccchhh---hccccccccc
Confidence 4457999999999999999988 34567788888888877766443 333 56677664433 4346799999
Q ss_pred EEc-cccccCCc-hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 259 YAS-AVFLHMPD-KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 259 vs~-~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+|. .+++|+.. .+...+|++++++||| ||.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~ 141 (246)
T d1y8ca_ 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKE-GGVFIFD 141 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEE-EEEEEEE
T ss_pred ceeeeeeeccCCHHHHHHHHHHHHHhCCC-CeEEEEE
Confidence 986 67888754 4566799999999999 9999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.2e-15 Score=132.80 Aligned_cols=150 Identities=8% Similarity=-0.073 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCC---------------
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQG--------------- 230 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~--------------- 230 (343)
...+.+.+.+.+.++++.+|||+|||+|+.+..|++ .++.|+++|.|+.+++.+++.....
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~----~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD----RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHH----TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHhhccccccchhccccccee
Confidence 344566676667888999999999999999999998 6778888888888887665432110
Q ss_pred -CCCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-c----ccC--C
Q 019282 231 -LLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-F----CSR--L 302 (343)
Q Consensus 231 -~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-~----~~~--~ 302 (343)
.....+.+.+++..++.. ...+.||+|+...+++|++......+++++.++||| ||++++..... - ... .
T Consensus 106 ~~~~~~v~~~~~d~~~l~~-~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp-gG~~~l~~~~~~~~~~~gpp~~~ 183 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPR-TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK-KFQYLLCVLSYDPTKHPGPPFYV 183 (229)
T ss_dssp EETTSSEEEEESCGGGGGG-SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE-EEEEEEEEEECCTTTCCCSSCCC
T ss_pred eecCCcEEEEEcchhhccc-cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC-cceEEEEEcccCCCCCCCCCCCC
Confidence 011245556554444432 246799999999999999988888899999999999 99987763211 0 111 2
Q ss_pred CHHHHHHHHHhcCCcEEEee
Q 019282 303 GGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~ 322 (343)
+.+++.+++.. +|++...+
T Consensus 184 ~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 184 PHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp CHHHHHHHHTT-TEEEEEEE
T ss_pred CHHHHHHHhcC-CCEEEEEE
Confidence 48888888854 67664443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.59 E-value=4.2e-15 Score=133.78 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|..+..+++.. ... ++|+|+++.+...|+++........++.+..++..... +...++||+
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~-~~~--v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~~~fD~ 96 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAG-IGE--YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDV 96 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHT-CSE--EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcC-CCe--EEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc-ccccccceE
Confidence 46788999999999999999888742 223 44555555555555543322112224556665433222 334678999
Q ss_pred EEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 258 IYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 258 Ivs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|+|..++||+.. .....+|+++.++||| ||+++++
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~-gG~~i~~ 133 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQRNIARHLRP-GGYFIMT 133 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred EEEcceeeecCCCHHHHHHHHHHHhceeCC-CCEEEEE
Confidence 999999999843 4556799999999999 9999875
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.9e-15 Score=134.05 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.++++.+|||||||+|.++..+++ .+..++++|++..+.+.+++.. . ..++.++..+++ + ++++||+
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~l~~a~~~~---~----~~~~~~~~~~l~-~-~~~~fD~ 105 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSLFLQE----RGFEVVLVDPSKEMLEVAREKG---V----KNVVEAKAEDLP-F-PSGAFEA 105 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHHHHHT----TTCEEEEEESCHHHHHHHHHHT---C----SCEEECCTTSCC-S-CTTCEEE
T ss_pred hcCCCCEEEEECCCCchhcccccc----cceEEEEeeccccccccccccc---c----cccccccccccc-c-ccccccc
Confidence 455778999999999999999987 3445666666677777666531 1 123455555554 3 3689999
Q ss_pred EEEc-cccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 258 IYAS-AVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 258 Ivs~-~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
|++. .++||++++.. +|+++.++||| ||.++++.
T Consensus 106 ii~~~~~~~~~~d~~~--~l~~i~r~Lk~-gG~~ii~~ 140 (246)
T d2avna1 106 VLALGDVLSYVENKDK--AFSEIRRVLVP-DGLLIATV 140 (246)
T ss_dssp EEECSSHHHHCSCHHH--HHHHHHHHEEE-EEEEEEEE
T ss_pred eeeecchhhhhhhHHH--HHHHHHhhcCc-CcEEEEEE
Confidence 9985 68999999876 99999999999 99999874
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.1e-15 Score=134.97 Aligned_cols=141 Identities=14% Similarity=0.119 Sum_probs=96.5
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC-------
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT------- 247 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~------- 247 (343)
.++..+|||||||+|.++..+++.+ +...+.++++|++..+.+.+++..........+.+. ....++.
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 116 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFA-WHKETSSEYQSRML 116 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEE-EECSCHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccccccccc-chhhhhhhhcchhc
Confidence 4555689999999999988877643 455677888999988888776543211111122211 1111211
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccc-------------------cccCCCHHHHH
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIK-------------------FCSRLGGEECT 308 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~-------------------~~~~~~~~~l~ 308 (343)
....+++||+|++.+++||++++.. +|++++++|+| ||.+++....+ ....+..+++.
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~--~l~~l~~~Lkp-gG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPA--TLKFFHSLLGT-NAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLT 193 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHH--HHHHHHHTEEE-EEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHH
T ss_pred ccCCCCceeEEEEccceecCCCHHH--HHHHHHhhCCC-CCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHH
Confidence 1124679999999999999998765 99999999999 99998863110 11123388899
Q ss_pred HHHHhcCCcEEEeee
Q 019282 309 KRLTSLGLEYIGKKT 323 (343)
Q Consensus 309 ~~L~~aGf~~v~~~~ 323 (343)
+.|.+.||.++....
T Consensus 194 ~~L~~~G~~~~~~~~ 208 (280)
T d1jqea_ 194 QMLDNLGLKYECYDL 208 (280)
T ss_dssp HHHHHHTCCEEEEEE
T ss_pred HHHHHCCCceEEEec
Confidence 999999998765443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.1e-15 Score=132.10 Aligned_cols=142 Identities=13% Similarity=-0.028 Sum_probs=91.4
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCC----------------------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKR---------------------- 235 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~---------------------- 235 (343)
...++.+|||||||+|.++..++.. ....++++|.++.+.+.+++..........
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~---~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACD---SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG---TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhcc---ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 3456789999999999988766542 222466666666666666554332111100
Q ss_pred ------cEEEec---ccCCcCCCCCCCceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEeccc-------
Q 019282 236 ------PIIVRG---EDMDFTKFGSGVVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNIK------- 297 (343)
Q Consensus 236 ------~~~~~~---~~~dl~~~~~~~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~------- 297 (343)
+..... ...........++||+|++.+++||++. .....++++++++||| ||.+++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-GG~li~~~~~~~~~~~~~ 203 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP-GGHLVTTVTLRLPSYMVG 203 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCCEEEET
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC-CcEEEEEEecccccceec
Confidence 000000 0011111124678999999999999964 3445689999999999 99999873211
Q ss_pred ----cccCCCHHHHHHHHHhcCCcEEEeee
Q 019282 298 ----FCSRLGGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 298 ----~~~~~~~~~l~~~L~~aGf~~v~~~~ 323 (343)
....++.+++.+.|+++||++++...
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 204 KREFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 12234599999999999999887654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=1.5e-14 Score=130.87 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=96.9
Q ss_pred hhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCC
Q 019282 153 EEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGL 231 (343)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~ 231 (343)
+...+|-.+.++-.+-.++.+.+. .+++.+|||+|||+|.+++.+++ .. ..++++|+|+.+...+ +++.+ .+.
T Consensus 94 ~pg~aFGTG~H~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~-~g-~~V~gvDis~~av~~A--~~na~~n~~ 167 (254)
T d2nxca1 94 EPGMAFGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEK-LG-GKALGVDIDPMVLPQA--EANAKRNGV 167 (254)
T ss_dssp CCC-----CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHH-TT-CEEEEEESCGGGHHHH--HHHHHHTTC
T ss_pred ccccccCccccchhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHh-cC-CEEEEEECChHHHHHH--HHHHHHcCC
Confidence 333444456666566677777643 56889999999999999998876 33 3456666666555544 44333 333
Q ss_pred CCCCcEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHH
Q 019282 232 LHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRL 311 (343)
Q Consensus 232 ~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L 311 (343)
...+..+ +..+....++||+|+++...+. ...+++++.++||| ||+++++.-.. ...+.+.+.+
T Consensus 168 ---~~~~~~~---d~~~~~~~~~fD~V~ani~~~~-----l~~l~~~~~~~Lkp-GG~lilSgil~----~~~~~v~~~~ 231 (254)
T d2nxca1 168 ---RPRFLEG---SLEAALPFGPFDLLVANLYAEL-----HAALAPRYREALVP-GGRALLTGILK----DRAPLVREAM 231 (254)
T ss_dssp ---CCEEEES---CHHHHGGGCCEEEEEEECCHHH-----HHHHHHHHHHHEEE-EEEEEEEEEEG----GGHHHHHHHH
T ss_pred ---ceeEEec---cccccccccccchhhhcccccc-----HHHHHHHHHHhcCC-CcEEEEEecch----hhHHHHHHHH
Confidence 3345554 2222224578999999755533 33478999999999 99999873211 1267888999
Q ss_pred HhcCCcEEEeee
Q 019282 312 TSLGLEYIGKKT 323 (343)
Q Consensus 312 ~~aGf~~v~~~~ 323 (343)
+++||+.++...
T Consensus 232 ~~~Gf~~~~~~~ 243 (254)
T d2nxca1 232 AGAGFRPLEEAA 243 (254)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHCCCEEEEEEE
Confidence 999999887654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=2.5e-13 Score=119.19 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=89.2
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCce
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVVY 255 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~f 255 (343)
++++||.+|||+|||+|..+.++++..+... ++++|.++.+.+.+++..+. . .++.++.++..+...+. ....+
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~--V~gvDis~~~i~~a~~~a~~-~--~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGI--IYAVEYSAKPFEKLLELVRE-R--NNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSE--EEEECCCHHHHHHHHHHHHH-C--SSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCe--EEEEeCCHHHHHHHHHHhhc-c--CCceEEEeeccCccccccccceE
Confidence 6789999999999999999999999887554 45555555555544443322 1 25566655444433222 12345
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CH----HHHHHHHHhcCCcEEEeeeccccccc
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GG----EECTKRLTSLGLEYIGKKTHDSLLFN 330 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~----~~l~~~L~~aGf~~v~~~~~~~l~~~ 330 (343)
|+|+. .+.|..+... ++.+++++||| ||.+++.......... .+ ....+.+ ++||+.++.....++-.+
T Consensus 127 d~v~~--~~~~~~~~~~--~l~~~~~~Lkp-gG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i~L~P~~~~ 200 (209)
T d1nt2a_ 127 DLIYQ--DIAQKNQIEI--LKANAEFFLKE-KGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHGSLMPYHRD 200 (209)
T ss_dssp EEEEE--CCCSTTHHHH--HHHHHHHHEEE-EEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEEECTTTCTT
T ss_pred EEEEe--cccChhhHHH--HHHHHHHHhcc-CCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEEccCCCccC
Confidence 55543 3445554444 89999999999 9999887422211111 11 1222223 479999887766666555
Q ss_pred hh
Q 019282 331 HY 332 (343)
Q Consensus 331 ~~ 332 (343)
|+
T Consensus 201 H~ 202 (209)
T d1nt2a_ 201 HI 202 (209)
T ss_dssp EE
T ss_pred cE
Confidence 54
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=1.5e-13 Score=118.04 Aligned_cols=135 Identities=18% Similarity=0.194 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+++...+...+.+.++.+|||||||+|.++..+++.. ..++++|+++ .+.+.++++.+ .++ ..++.++.++..+
T Consensus 19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~--~~l~~a~~n~~~~gl-~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNP--EAISTTEMNLQRHGL-GDNVTLMEGDAPE 93 (186)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCH--HHHHHHHHHHHHTTC-CTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc--eEEEEecCCH--HHHHHHHHHHHHcCC-CcceEEEECchhh
Confidence 4566677777899999999999999999999998742 3445555544 55555555444 344 3367777775554
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcE
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEY 318 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~ 318 (343)
.. .....||.|++....+++ ..+++.+.+.||| ||++++..... .....+.+.+.+.||..
T Consensus 94 ~~--~~~~~~D~v~~~~~~~~~-----~~~~~~~~~~Lkp-gG~lvi~~~~~----e~~~~~~~~l~~~~~~~ 154 (186)
T d1l3ia_ 94 AL--CKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKP-GGRIIVTAILL----ETKFEAMECLRDLGFDV 154 (186)
T ss_dssp HH--TTSCCEEEEEESCCTTCH-----HHHHHHHHHTEEE-EEEEEEEECBH----HHHHHHHHHHHHTTCCC
T ss_pred cc--cccCCcCEEEEeCccccc-----hHHHHHHHHHhCc-CCEEEEEeecc----ccHHHHHHHHHHcCCCe
Confidence 43 134689999998776554 2379999999999 99998764210 12455677888888753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3e-14 Score=126.57 Aligned_cols=147 Identities=16% Similarity=0.091 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.+.+.+.+... .+|.+|||||||+|..+..+++..+ ..++++|+++ .+.+.++++.... ...+..+.++..+.
T Consensus 40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~--~~~~~a~~~~~~~--~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECND--GVFQRLRDWAPRQ--THKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCH--HHHHHHHHHGGGC--SSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCH--HHHHHHHHHhhhc--cccccccccccccc
Confidence 334444544433 5688999999999999999987432 3455555554 5555555543321 11344444432222
Q ss_pred CCCCCCCceeEEEE-----ccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc----ccccCCC------HHHHHHHH
Q 019282 247 TKFGSGVVYDLIYA-----SAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI----KFCSRLG------GEECTKRL 311 (343)
Q Consensus 247 ~~~~~~~~fDlIvs-----~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~----~~~~~~~------~~~l~~~L 311 (343)
.....+++||.|+. ...++|+.+... ++++++|+||| ||+|++.... .....+. .+.+...|
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~--~~~~~~r~Lkp-GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHTHQFNF--IKNHAFRLLKP-GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPAL 190 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTTHHHHH--HHHTHHHHEEE-EEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHH
T ss_pred ccccccccccceeecccccccccccccCHHH--HHHHHHHHcCC-CcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHH
Confidence 21224678999874 566777776655 99999999999 9999774210 0111111 45566778
Q ss_pred HhcCCcEEEee
Q 019282 312 TSLGLEYIGKK 322 (343)
Q Consensus 312 ~~aGf~~v~~~ 322 (343)
.++||+.....
T Consensus 191 ~~agF~~~~i~ 201 (229)
T d1zx0a1 191 LEAGFRRENIR 201 (229)
T ss_dssp HHTTCCGGGEE
T ss_pred HHCCCeeEEEE
Confidence 89999755433
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=2.2e-13 Score=117.75 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=82.6
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF 249 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~ 249 (343)
+.+.+.+.+.++.+|||||||+|.++..+++.. ..++++|+++.+...+ +++.+ .++.+.++.+..+ |+.+.
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a--~~n~~~~~l~~~~i~~~~~---d~~~~ 114 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLA--KENIKLNNLDNYDIRVVHS---DLYEN 114 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHH--HHHHHHTTCTTSCEEEEEC---STTTT
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhH--HHHHHHhCCccceEEEEEc---chhhh
Confidence 446666788899999999999999999998754 3567777776555554 43322 3444445666665 33323
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
..++.||+|+++.++|+.. .....+++++.+.||| ||.+++..
T Consensus 115 ~~~~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~Lkp-gG~l~i~~ 157 (194)
T d1dusa_ 115 VKDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKD-NGEIWVVI 157 (194)
T ss_dssp CTTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hccCCceEEEEcccEEecc-hhhhhHHHHHHHhcCc-CcEEEEEE
Confidence 3467999999999886544 3445689999999999 99998764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.43 E-value=2.7e-13 Score=122.10 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=89.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
...++..++++||.+|||+|||+|.++..+++...+ ..++.+| .++.+.+.++++.+......++.+..+ |+.+
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD--~~e~~~~~A~~n~~~~~~~~nv~~~~~---Di~~ 148 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVE--RDEDNLKKAMDNLSEFYDIGNVRTSRS---DIAD 148 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEEC--SCHHHHHHHHHHHHTTSCCTTEEEECS---CTTT
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEE--CCHHHHHHHHHHHHHhcCCCceEEEEe---eeec
Confidence 355677789999999999999999999999987643 3444554 445555555554333222336666665 4444
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEEe
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~~ 321 (343)
...++.||.|++ +++++.. +++++.++||| ||++++..+ ... .+.+.+.|++.||..++.
T Consensus 149 ~~~~~~fD~V~l-----d~p~p~~--~l~~~~~~LKp-GG~lv~~~P-----~i~Qv~~~~~~l~~~gf~~i~~ 209 (250)
T d1yb2a1 149 FISDQMYDAVIA-----DIPDPWN--HVQKIASMMKP-GSVATFYLP-----NFDQSEKTVLSLSASGMHHLET 209 (250)
T ss_dssp CCCSCCEEEEEE-----CCSCGGG--SHHHHHHTEEE-EEEEEEEES-----SHHHHHHHHHHSGGGTEEEEEE
T ss_pred ccccceeeeeee-----cCCchHH--HHHHHHHhcCC-CceEEEEeC-----CcChHHHHHHHHHHCCCceeEE
Confidence 445678999986 5677655 89999999999 999987532 111 455667788899976653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=7.4e-13 Score=120.23 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=77.7
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+.+.+.... ..++.+|||||||+|.++..+++..+...++++|+++ .+...+++. ..++.+..++..
T Consensus 69 l~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~--~~~~~a~~~------~~~~~~~~~d~~ 139 (268)
T d1p91a_ 69 LRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK--VAIKAAAKR------YPQVTFCVASSH 139 (268)
T ss_dssp HHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH--HHHHHHHHH------CTTSEEEECCTT
T ss_pred HHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH--hhhhhhhcc------cccccceeeehh
Confidence 4555666666544 3456799999999999999999977655555555554 555544432 125667776555
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+++ + .+++||+|++..+++| +++++|+||| ||++++..
T Consensus 140 ~l~-~-~~~sfD~v~~~~~~~~---------~~e~~rvLkp-gG~l~~~~ 177 (268)
T d1p91a_ 140 RLP-F-SDTSMDAIIRIYAPCK---------AEELARVVKP-GGWVITAT 177 (268)
T ss_dssp SCS-B-CTTCEEEEEEESCCCC---------HHHHHHHEEE-EEEEEEEE
T ss_pred hcc-C-CCCCEEEEeecCCHHH---------HHHHHHHhCC-CcEEEEEe
Confidence 554 3 4689999999988876 4679999999 99999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=4.5e-14 Score=129.65 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCC--CCcEEEecccCCc-
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLH--KRPIIVRGEDMDF- 246 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~--~~~~~~~~~~~dl- 246 (343)
+++.+.+...++.+|||||||+|..+..|++ .++.++++|.++.|.+.+++... .+... ........+...+
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~----~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHH----cCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence 4444444555678999999999999999998 34567777777777766654332 11110 0111221111111
Q ss_pred CCCCCCCceeEEEEc-cccccCCch-----HHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TKFGSGVVYDLIYAS-AVFLHMPDK-----LVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~-~v~~hl~~~-----~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.+..+.||.|++. .+++|+++. +...+|++++++||| ||+|++.
T Consensus 122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~ 173 (292)
T d1xvaa_ 122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP-GGLLVID 173 (292)
T ss_dssp HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc-CcEEEEe
Confidence 112345789999985 589998653 455699999999999 9999985
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=3.4e-13 Score=118.64 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
+..+...+.+.+.++++.+|||||||+|..+..+++..+. ..++++|+++.. .+.++++.+.... .++.++.++..
T Consensus 60 ~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~--~~~a~~~~~~~~~-~n~~~~~~d~~ 136 (213)
T d1dl5a1 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKI--CEIAKRNVERLGI-ENVIFVCGDGY 136 (213)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHH--HHHHHHHHHHTTC-CSEEEEESCGG
T ss_pred cchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhh--HHHhhhhHhhhcc-cccccccCchH
Confidence 3567777888899999999999999999999999987753 345556655544 4444444332222 25555655333
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+. +..+++||+|++..+++|+++. +.+.||| ||++++..
T Consensus 137 ~~--~~~~~~fD~I~~~~~~~~~p~~--------l~~~Lkp-GG~lv~pv 175 (213)
T d1dl5a1 137 YG--VPEFSPYDVIFVTVGVDEVPET--------WFTQLKE-GGRVIVPI 175 (213)
T ss_dssp GC--CGGGCCEEEEEECSBBSCCCHH--------HHHHEEE-EEEEEEEB
T ss_pred Hc--cccccchhhhhhhccHHHhHHH--------HHHhcCC-CcEEEEEE
Confidence 22 2245789999999999998753 5678999 99998853
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=2.9e-12 Score=113.67 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=92.5
Q ss_pred hcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCC
Q 019282 176 ASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGV 253 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~ 253 (343)
.++++||.+|||+|||+|.++.++++...+ ..++++|+++.+...+. ++.+. . .+...+..+......+. ...
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~--~~a~~-~--~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV--PIVEE-R--RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH--HHHSS-C--TTEEEEECCTTCGGGGTTTCC
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH--HHHHh-c--CCceEEEEECCCccccccccc
Confidence 357899999999999999999999998754 45677777766655543 32221 1 13344444333333222 245
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCC-CHHHH---HHHHHhcCCcEEEeeecccccc
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRL-GGEEC---TKRLTSLGLEYIGKKTHDSLLF 329 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~-~~~~l---~~~L~~aGf~~v~~~~~~~l~~ 329 (343)
.+|.|++. +.|..+... +++++++.||| ||.++++......... .++.+ .+.+.+.||+.++.....++-.
T Consensus 143 ~vD~i~~d--~~~~~~~~~--~l~~~~~~Lkp-gG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~p~~~ 217 (227)
T d1g8aa_ 143 KVDVIFED--VAQPTQAKI--LIDNAEVYLKR-GGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLEPYEK 217 (227)
T ss_dssp CEEEEEEC--CCSTTHHHH--HHHHHHHHEEE-EEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTSS
T ss_pred ceEEEEEE--ccccchHHH--HHHHHHHhccc-CCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCCCCCC
Confidence 78888764 334444443 89999999999 9999987532222211 12222 2335567999998766555555
Q ss_pred chh
Q 019282 330 NHY 332 (343)
Q Consensus 330 ~~~ 332 (343)
+|+
T Consensus 218 ~H~ 220 (227)
T d1g8aa_ 218 DHA 220 (227)
T ss_dssp SEE
T ss_pred ceE
Confidence 553
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.3e-12 Score=118.79 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
...-...+...+++.||.+|||+|||+|.++..+++...+. ..++++|.++.+.+.++++.+ .+. ..++.+..+
T Consensus 88 ypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~-~~~v~~~~~--- 162 (266)
T d1o54a_ 88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGL-IERVTIKVR--- 162 (266)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTC-GGGEEEECC---
T ss_pred chHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhcc-ccCcEEEec---
Confidence 34556778888999999999999999999999999876432 235555555566665555443 333 224444433
Q ss_pred CcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
|+........||.|+ ++++++.. +++++.++||| ||++++..+. . ...+++.+.|++.||..++..
T Consensus 163 d~~~~~~~~~~D~V~-----~d~p~p~~--~l~~~~~~LKp-GG~lv~~~P~--~--~Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 163 DISEGFDEKDVDALF-----LDVPDPWN--YIDKCWEALKG-GGRFATVCPT--T--NQVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp CGGGCCSCCSEEEEE-----ECCSCGGG--THHHHHHHEEE-EEEEEEEESS--H--HHHHHHHHHHHHSSEEEEEEE
T ss_pred cccccccccceeeeE-----ecCCCHHH--HHHHHHhhcCC-CCEEEEEeCc--c--cHHHHHHHHHHHCCceeEEEE
Confidence 332222356788875 47888766 99999999999 9999875421 0 014567778899999876644
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.3e-12 Score=118.33 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=87.6
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccC-CCCCCC---------------------
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQ-GLLHKR--------------------- 235 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~-~~~~~~--------------------- 235 (343)
+..++.+|||||||+|.+....+.... ..++++|+ ++.+.+.+++.... ....+.
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~--S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDF--LEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECS--CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeC--CHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 455688999999999988654443322 24455554 54555544433221 110000
Q ss_pred ------c-EEEeccc---CCcCCC-CCCCceeEEEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEecc------
Q 019282 236 ------P-IIVRGED---MDFTKF-GSGVVYDLIYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNI------ 296 (343)
Q Consensus 236 ------~-~~~~~~~---~dl~~~-~~~~~fDlIvs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~------ 296 (343)
+ .....+. ..+... ...+.||+|++.+++||+.. .....++++++++||| ||.|++....
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP-GG~li~~~~~~~~~~~ 206 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP-GGHLLLIGALEESWYL 206 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEEESCCEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC-CCEEEEecccCCcccc
Confidence 0 0111100 001101 12468999999999999963 2456689999999999 9999886311
Q ss_pred ----cc-ccCCCHHHHHHHHHhcCCcEEEeeec
Q 019282 297 ----KF-CSRLGGEECTKRLTSLGLEYIGKKTH 324 (343)
Q Consensus 297 ----~~-~~~~~~~~l~~~L~~aGf~~v~~~~~ 324 (343)
.+ ...++.+++.+.|+++||+++..+..
T Consensus 207 ~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 207 AGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 11 12246999999999999999876643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.31 E-value=2.3e-11 Score=108.89 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcC-CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASH-ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~-l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
....+.+.+... .....+|||||||+|.++..+++.+|....++.|+.. . .+ ..+ ...++.++.+ |
T Consensus 66 ~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~--v-i~------~~~-~~~ri~~~~g---d 132 (244)
T d1fp1d2 66 ATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ--V-IE------NAP-PLSGIEHVGG---D 132 (244)
T ss_dssp HHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH--H-HT------TCC-CCTTEEEEEC---C
T ss_pred HHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh--h-hh------ccC-CCCCeEEecC---C
Confidence 344555666666 4666899999999999999999999877766666532 1 11 111 2346777765 3
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-------cc-----------------ccC
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-------KF-----------------CSR 301 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-------~~-----------------~~~ 301 (343)
+.+.. ...|+|++..++|+.+++....+|+++++.|+| ||+++|.... .. ...
T Consensus 133 ~~~~~--p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~p-gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~e 209 (244)
T d1fp1d2 133 MFASV--PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP-NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRE 209 (244)
T ss_dssp TTTCC--CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccc--ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcC
Confidence 33222 245999999999999999998999999999999 9999887421 00 011
Q ss_pred CCHHHHHHHHHhcCCcEEEee
Q 019282 302 LGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 302 ~~~~~l~~~L~~aGf~~v~~~ 322 (343)
++.+++.++++++||+.++..
T Consensus 210 rt~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 210 RTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp EEHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEE
Confidence 238999999999999988764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=3.7e-12 Score=115.34 Aligned_cols=138 Identities=15% Similarity=0.083 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGE 242 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~ 242 (343)
...-...+...++++||.+|||+|||+|.++..|++...+ ..++.+ |.+..+.+.++++.+ .+....++.+..++
T Consensus 81 ypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~--d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d 158 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY--EQRADHAEHARRNVSGCYGQPPDNWRLVVSD 158 (264)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred chHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEe--cCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence 4456677888899999999999999999999999998754 344444 555555555554332 12223356666653
Q ss_pred cCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHH-hcCCcEEE
Q 019282 243 DMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLT-SLGLEYIG 320 (343)
Q Consensus 243 ~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~-~aGf~~v~ 320 (343)
..+.. + +++.||.|+. |++++.. ++.+++++||| ||++++..+ ... ...+.+.|+ +.||..++
T Consensus 159 ~~~~~-~-~~~~fDaV~l-----dlp~P~~--~l~~~~~~Lkp-GG~lv~~~P-----~i~Qv~~~~~~l~~~~~f~~i~ 223 (264)
T d1i9ga_ 159 LADSE-L-PDGSVDRAVL-----DMLAPWE--VLDAVSRLLVA-GGVLMVYVA-----TVTQLSRIVEALRAKQCWTEPR 223 (264)
T ss_dssp GGGCC-C-CTTCEEEEEE-----ESSCGGG--GHHHHHHHEEE-EEEEEEEES-----SHHHHHHHHHHHHHHSSBCCCE
T ss_pred ccccc-c-cCCCcceEEE-----ecCCHHH--HHHHHHhccCC-CCEEEEEeC-----ccChHHHHHHHHHHcCCeecce
Confidence 33322 3 4689999975 7888866 99999999999 999977532 111 344555564 56787544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=1e-11 Score=108.32 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=89.2
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
...|||||||+|..+..+++..+...+.++|++...+..+..+ ..+.++ .++.++.+++.++.+..+++++|.|++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~-~~~~~l--~Nv~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK-VKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHH-HHHHhc--cCchhcccchhhhhcccCchhhhccccc
Confidence 4579999999999999999988877766666655554444322 122444 3677887766665433357899999998
Q ss_pred cccccCCchH------HHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 262 AVFLHMPDKL------VWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 262 ~v~~hl~~~~------~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
+...|..... ...+|+.++++||| ||.|++......+ .+.+.+.+.+.|+...
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkp-gG~l~i~TD~~~y----~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGK-GGSIHFKTDNRGL----FEYSLKSFSEYGLLLT 165 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTT-SCEEEEEESCHHH----HHHHHHHHHHHTCEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCC-CcEEEEEECChHH----HHHHHHHHHHCCCccc
Confidence 8776654432 13589999999999 9999886422211 3445667777787543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.6e-11 Score=109.33 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=100.8
Q ss_pred CCCCCCCCCchhhhhhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH
Q 019282 139 NNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218 (343)
Q Consensus 139 ~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~ 218 (343)
+...-+|+|+++. +++...... ...+.+|||+|||+|..++.++...+...++++|+++...
T Consensus 84 ~~~VlIPRpeTE~-----------------lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al 145 (274)
T d2b3ta1 84 SPATLIPRPDTEC-----------------LVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAV 145 (274)
T ss_dssp CTTSCCCCTTHHH-----------------HHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHH
T ss_pred eccccccccchhh-----------------hhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHH
Confidence 3455677777663 444444433 3456789999999999999999988877766776666666
Q ss_pred HHHHHHhccc-CCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccccC-------------Cc----------hHHHH
Q 019282 219 MAAFRYELPS-QGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHM-------------PD----------KLVWV 274 (343)
Q Consensus 219 ~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl-------------~~----------~~~~~ 274 (343)
..+ +++.. .+. .++.++.++ +.+...+++||+|+++--+-.. |. .....
T Consensus 146 ~~A--~~Na~~~~~--~~v~~~~~d---~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~ 218 (274)
T d2b3ta1 146 SLA--QRNAQHLAI--KNIHILQSD---WFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVH 218 (274)
T ss_dssp HHH--HHHHHHHTC--CSEEEECCS---TTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHH
T ss_pred hHH--HHHHHHhCc--ccceeeecc---cccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHH
Confidence 555 44333 233 256777663 3222245699999998443211 11 12345
Q ss_pred HHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 275 GLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 275 ~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+++...+.|+| ||.+++.++.. ..+.+.+.+++.||..++
T Consensus 219 i~~~a~~~L~~-~G~l~lEig~~-----q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 219 IIEQSRNALVS-GGFLLLEHGWQ-----QGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp HHHHHGGGEEE-EEEEEEECCSS-----CHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHhcCC-CCEEEEEECch-----HHHHHHHHHHHCCCCeEE
Confidence 78889999999 99999986422 257788999999997654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.27 E-value=6.8e-12 Score=111.01 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+...+.+.+.++++.+|||||||+|.++..+++.. ..++.+++++ .....++++... ..++.++.++..
T Consensus 56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~--~~~~~A~~~~~~---~~nv~~~~~d~~-- 126 (224)
T d1vbfa_ 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINE--KMYNYASKLLSY---YNNIKLILGDGT-- 126 (224)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCH--HHHHHHHHHHTT---CSSEEEEESCGG--
T ss_pred hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh--cccccccccH--HHHHHHHHHHhc---ccccccccCchh--
Confidence 3455667778899999999999999999999888753 3444555544 555545543322 236666665322
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
..+...++||+|++....+++++. +.+.||| ||+|++-.
T Consensus 127 ~g~~~~~pfD~Iiv~~a~~~ip~~--------l~~qLk~-GGrLV~pv 165 (224)
T d1vbfa_ 127 LGYEEEKPYDRVVVWATAPTLLCK--------PYEQLKE-GGIMILPI 165 (224)
T ss_dssp GCCGGGCCEEEEEESSBBSSCCHH--------HHHTEEE-EEEEEEEE
T ss_pred hcchhhhhHHHHHhhcchhhhhHH--------HHHhcCC-CCEEEEEE
Confidence 223345789999999999888753 5678999 99998853
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.6e-11 Score=114.49 Aligned_cols=124 Identities=16% Similarity=0.223 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc------ccCCCCCCCcE
Q 019282 164 AGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL------PSQGLLHKRPI 237 (343)
Q Consensus 164 ~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~------~~~~~~~~~~~ 237 (343)
+....++..+.+.+.++++.+|||||||+|.++..++...+...++++|+++.+...+..+.. ...+....++.
T Consensus 134 e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp CCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred hhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 345667777888899999999999999999999999987776666666666655444322110 11233444677
Q ss_pred EEecccCCcCCCCCCCc--eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 238 IVRGEDMDFTKFGSGVV--YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 238 ~~~~~~~dl~~~~~~~~--fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
++.++..+.+ + .+.. .|+|+++. +.|.++.. ..|.++++.||| ||++++.
T Consensus 214 ~~~gd~~~~~-~-~~~~~~advi~~~~-~~f~~~~~--~~l~e~~r~LKp-Gg~iv~~ 265 (328)
T d1nw3a_ 214 LERGDFLSEE-W-RERIANTSVIFVNN-FAFGPEVD--HQLKERFANMKE-GGRIVSS 265 (328)
T ss_dssp EEECCTTSHH-H-HHHHHHCSEEEECC-TTTCHHHH--HHHHHHHTTCCT-TCEEEES
T ss_pred EEECcccccc-c-ccccCcceEEEEcc-eecchHHH--HHHHHHHHhCCC-CcEEEEe
Confidence 7877433332 1 1222 46777654 44655544 489999999999 9999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.2e-12 Score=110.17 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=76.0
Q ss_pred HHHHHHHHhc--CCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCC---CCCCcEEEe
Q 019282 168 DVFEFLAEAS--HITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGL---LHKRPIIVR 240 (343)
Q Consensus 168 ~~~~~l~~~~--~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~---~~~~~~~~~ 240 (343)
.+...+.+.+ .++++.+|||||||+|..+..+++...+ ..++++|+++ .+.+.++++.. .+. ...++.+..
T Consensus 61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~--~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIK--ELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCH--HHHHHHHHhccccCcccccccceEEEE
Confidence 3555666655 7899999999999999999999886543 3444555544 44444443322 121 122455555
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
++.... +...++||+|++..+++++++. +.+.||| ||++++..
T Consensus 139 gD~~~~--~~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp-GG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMG--YAEEAPYDAIHVGAAAPVVPQA--------LIDQLKP-GGRLILPV 181 (224)
T ss_dssp SCGGGC--CGGGCCEEEEEECSBBSSCCHH--------HHHTEEE-EEEEEEEE
T ss_pred eecccc--cchhhhhhhhhhhcchhhcCHH--------HHhhcCC-CcEEEEEE
Confidence 533222 2245789999999999988753 6789999 99999864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.3e-11 Score=110.71 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc----------CCCCCCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS----------QGLLHKR 235 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~----------~~~~~~~ 235 (343)
..-...++..+++.||.+|||+|||+|.++..|++...+ ..++.+|+++.....+ +++.+ ......+
T Consensus 84 pkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A--~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 84 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA--KKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHH--HHHHHHHHHHHTTTCSSCCCCC
T ss_pred cccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHH--HHHHHHhhhhhhhhhhhccccc
Confidence 344566777889999999999999999999999998753 4556666665544444 33221 0111235
Q ss_pred cEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhc
Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSL 314 (343)
Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~a 314 (343)
+.+..++..+......+..||.|+. +++++.. ++.+++++||| ||++++..+ ... ...+.+.|++.
T Consensus 162 v~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~--~l~~~~~~LKp-GG~lv~~~P-----~i~Qv~~~~~~l~~~ 228 (324)
T d2b25a1 162 VDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHV--TLPVFYPHLKH-GGVCAVYVV-----NITQVIELLDGIRTC 228 (324)
T ss_dssp EEEEESCTTCCC-------EEEEEE-----CSSSTTT--THHHHGGGEEE-EEEEEEEES-----SHHHHHHHHHHHHHH
T ss_pred eeEEecchhhcccccCCCCcceEee-----cCcCHHH--HHHHHHHhccC-CCEEEEEeC-----CHHHHHHHHHHHHHc
Confidence 6666654333321123568999975 5677655 89999999999 999987531 111 34455666654
Q ss_pred --CCcEEEe
Q 019282 315 --GLEYIGK 321 (343)
Q Consensus 315 --Gf~~v~~ 321 (343)
||..++.
T Consensus 229 ~~~f~~i~~ 237 (324)
T d2b25a1 229 ELALSCEKI 237 (324)
T ss_dssp TCCEEEEEE
T ss_pred CCCceeeEE
Confidence 5665553
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.21 E-value=1.3e-10 Score=101.08 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEc
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYAS 261 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~ 261 (343)
...|||||||+|.++..+|+..|...+.++|++......+..+ ....++ .++.++.+++.++.+..+++++|.|++.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~-~~~~~l--~Ni~~~~~da~~l~~~~~~~~~~~i~i~ 108 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDK-VLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLYLN 108 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHh-hhhhcc--ccceeeecCHHHHhhhccCCceehhccc
Confidence 4579999999999999999998888777777776655554332 222344 2577777777777655467899999886
Q ss_pred cccccCCch------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 262 AVFLHMPDK------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 262 ~v~~hl~~~------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+.-.+.... ....+|+.+.++||| ||.|++......+ .+.+.+.+...|+....
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~Lkp-gG~l~i~TD~~~Y----~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKTDNRGL----FEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEESCHHH----HHHHHHHHHHHTCEEEE
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCC-CcEEEEEECCccH----HHHHHHHHHHCCccccc
Confidence 655433222 114589999999999 9999886422222 23445566777876443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=7.4e-11 Score=108.87 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~ 250 (343)
+.|.+...+.++++|||||||+|.++..+++. +...++++|.++. +...++...+.+. ..++.++.++..++. .
T Consensus 25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~--~~~a~~~~~~~~~-~~~i~~~~~~~~~l~-~- 98 (311)
T d2fyta1 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEI--LYQAMDIIRLNKL-EDTITLIKGKIEEVH-L- 98 (311)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTH--HHHHHHHHHHTTC-TTTEEEEESCTTTSC-C-
T ss_pred HHHHhccccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHH--HHHHHHHHHHhCC-CccceEEEeeHHHhc-C-
Confidence 33544456678899999999999999988884 3344556655554 3332232233343 346777777555544 2
Q ss_pred CCCceeEEEEccccccCCch-HHHHHHHHHHhccCCCCcEEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi 292 (343)
..++||+|++..+.+++... ....++....+.||| ||+++.
T Consensus 99 ~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp-~G~iip 140 (311)
T d2fyta1 99 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK-GGSVYP 140 (311)
T ss_dssp SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE-EEEEES
T ss_pred ccccceEEEEeeeeeecccccccHHHHHHHHhcCCC-CcEEec
Confidence 35799999998777766443 455678888899999 999874
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=3.8e-10 Score=100.85 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYA 260 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs 260 (343)
...+|||||||+|.++..+++.+|...+++.|+.. ..+ . .+. ..++.++.+ |+.+. ...+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---vi~---~---~~~-~~rv~~~~g---D~f~~--~p~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ---VVE---N---LSG-SNNLTYVGG---DMFTS--IPNADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH---HHT---T---CCC-BTTEEEEEC---CTTTC--CCCCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH---HHH---h---Ccc-cCceEEEec---CcccC--CCCCcEEEE
Confidence 34689999999999999999999888777777532 111 1 122 347777766 44322 235899999
Q ss_pred ccccccCCchHHHHHHHHHHhccCCCC---cEEEEEecc----c---------------c----ccCCCHHHHHHHHHhc
Q 019282 261 SAVFLHMPDKLVWVGLERLASKLRPYD---GRIFVSHNI----K---------------F----CSRLGGEECTKRLTSL 314 (343)
Q Consensus 261 ~~v~~hl~~~~~~~~L~~l~r~LkP~G---G~lvi~~~~----~---------------~----~~~~~~~~l~~~L~~a 314 (343)
..++|+.+++....+|+++++.|+| | |+++|.... . . ...++.+++.++++++
T Consensus 145 ~~vLHdw~d~~~~~iL~~~~~al~p-gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~A 223 (244)
T d1fp2a2 145 KYILHNWTDKDCLRILKKCKEAVTN-DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA 223 (244)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSG-GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHT
T ss_pred EeecccCChHHHHHHHHHHHHHcCc-ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHc
Confidence 9999999999988999999999999 8 667765210 0 0 0112389999999999
Q ss_pred CCcEEEeee
Q 019282 315 GLEYIGKKT 323 (343)
Q Consensus 315 Gf~~v~~~~ 323 (343)
||++++...
T Consensus 224 Gf~~~~i~~ 232 (244)
T d1fp2a2 224 GFQHYKISP 232 (244)
T ss_dssp TCCEEEEEE
T ss_pred CCceEEEEE
Confidence 999988653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=4.4e-10 Score=100.22 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=98.2
Q ss_pred HHHHHHHhcCC-CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 169 VFEFLAEASHI-TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 169 ~~~~l~~~~~l-~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
....+...... ....+|||||||+|.++..+++++|....++.|+... .+ . .....++.++.+ |+.
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v---i~------~-~~~~~r~~~~~~---d~~ 134 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV---IE------D-APSYPGVEHVGG---DMF 134 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT---TT------T-CCCCTTEEEEEC---CTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh---hh------h-cccCCceEEecc---ccc
Confidence 33445444444 4457899999999999999999999888777776542 11 1 112236666655 332
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEecc-----c--------------------cccCC
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNI-----K--------------------FCSRL 302 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~-----~--------------------~~~~~ 302 (343)
+..+ ..|+++...++|+.+++....+|+++++.|+| ||+++|.... + ....+
T Consensus 135 ~~~P--~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~p-gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~er 211 (243)
T d1kyza2 135 VSIP--KADAVFMKWICHDWSDEHCLKFLKNCYEALPD-NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKER 211 (243)
T ss_dssp TCCC--CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCS-SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred ccCC--CcceEEEEEEeecCCHHHHHHHHHHHHHhcCC-CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcC
Confidence 2212 35778889999999999998999999999999 9999886310 0 00112
Q ss_pred CHHHHHHHHHhcCCcEEEeee
Q 019282 303 GGEECTKRLTSLGLEYIGKKT 323 (343)
Q Consensus 303 ~~~~l~~~L~~aGf~~v~~~~ 323 (343)
+.+++.++++++||+.++...
T Consensus 212 t~~e~~~ll~~AGf~~vkv~~ 232 (243)
T d1kyza2 212 TQKEFEDLAKGAGFQGFKVHC 232 (243)
T ss_dssp EHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHcCCCcEEEEE
Confidence 388999999999999987653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=5e-11 Score=110.45 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
.+.++++|||||||+|.++..+++. +...++++|.++. +....+.....+. .+++.++.++..+++ . +.++||+
T Consensus 30 ~~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~--~~~a~~~~~~n~~-~~~v~~~~~~~~~~~-~-~~~~~D~ 103 (316)
T d1oria_ 30 HLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI--SDYAVKIVKANKL-DHVVTIIKGKVEEVE-L-PVEKVDI 103 (316)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT--HHHHHHHHHHTTC-TTTEEEEESCTTTCC-C-SSSCEEE
T ss_pred ccCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH--HhhhhhHHHHhCC-ccccceEeccHHHcc-c-ccceeEE
Confidence 3557899999999999999988874 3344556665543 2222222222344 346778877555554 2 3578999
Q ss_pred EEEccccccCCch-HHHHHHHHHHhccCCCCcEEEE
Q 019282 258 IYASAVFLHMPDK-LVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 258 Ivs~~v~~hl~~~-~~~~~L~~l~r~LkP~GG~lvi 292 (343)
|++..+.+++..+ ....++..+.++||| ||.++.
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp-~G~iiP 138 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAP-DGLIFP 138 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCC-CeEEEe
Confidence 9998777666443 455689999999999 999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=9.4e-11 Score=109.03 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=73.0
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
..+.++.+|||||||+|.++..+++. +...+++++.++. ...+++....+....++.++.++..++. + ++++||
T Consensus 34 ~~~~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~~---~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~-~~~~~D 107 (328)
T d1g6q1_ 34 KDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSI---IEMAKELVELNGFSDKITLLRGKLEDVH-L-PFPKVD 107 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTH---HHHHHHHHHHTTCTTTEEEEESCTTTSC-C-SSSCEE
T ss_pred cccCCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCHH---HHHHHHHHHHhCccccceEEEeehhhcc-C-ccccee
Confidence 34457899999999999999988874 3345566665542 2223333232233446777777554443 2 357999
Q ss_pred EEEEccccccCCc-hHHHHHHHHHHhccCCCCcEEEE
Q 019282 257 LIYASAVFLHMPD-KLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 257 lIvs~~v~~hl~~-~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
+|++..+.+++.. .....++..+.++||| ||.++-
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~Lkp-gG~iiP 143 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHYLVE-GGLIFP 143 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred EEEEEecceeeccchhHHHHHHHHHhccCC-CeEEEe
Confidence 9999877766644 3344588889999999 999863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.09 E-value=1.6e-10 Score=101.37 Aligned_cols=112 Identities=19% Similarity=0.318 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
-.+...+.+.++++++.+|||||||+|+.+..++...+ ..++.+++++.....+ +++.. .+. .++.+..++..+
T Consensus 64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a--~~~l~~~g~--~nv~~~~gd~~~ 138 (215)
T d1jg1a_ 64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFA--KRNLERAGV--KNVHVILGDGSK 138 (215)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHH--HHHHHHTTC--CSEEEEESCGGG
T ss_pred hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHH--HHHHHHcCC--ceeEEEECcccc
Confidence 44667778888999999999999999999998887654 3466777776554444 33322 333 367777764332
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
.+...++||.|++.....++++. +.+.||| ||++++..
T Consensus 139 --g~~~~~pfD~Iiv~~a~~~ip~~--------l~~qL~~-gGrLv~pv 176 (215)
T d1jg1a_ 139 --GFPPKAPYDVIIVTAGAPKIPEP--------LIEQLKI-GGKLIIPV 176 (215)
T ss_dssp --CCGGGCCEEEEEECSBBSSCCHH--------HHHTEEE-EEEEEEEE
T ss_pred --CCcccCcceeEEeecccccCCHH--------HHHhcCC-CCEEEEEE
Confidence 23356899999999999888764 5678999 99998763
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=2.4e-10 Score=109.08 Aligned_cols=120 Identities=11% Similarity=0.013 Sum_probs=77.1
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--------CCCCCCCc
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--------QGLLHKRP 236 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--------~~~~~~~~ 236 (343)
..-.++..+.+.++++++.+|||||||+|.++..++...+...++++|+++.+...+ ++..+ .+......
T Consensus 200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~A--k~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT--ILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH--HHHHHHHHHHHHHTTBCCCCE
T ss_pred CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHH--HHHHHHHhhhhhhhccccccc
Confidence 344566677778899999999999999999999999988766666666666555444 33221 11111122
Q ss_pred EE-EecccCCcCCCC----CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 237 II-VRGEDMDFTKFG----SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 237 ~~-~~~~~~dl~~~~----~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+ ..+ ++...+ .-..+|+|+++. ++|.++. ...|.++++.||| ||++++.
T Consensus 278 ~~~~~~---~f~~~~~~d~~~~~adVV~inn-~~f~~~l--~~~L~ei~r~LKP-GGrIVs~ 332 (406)
T d1u2za_ 278 EFSLKK---SFVDNNRVAELIPQCDVILVNN-FLFDEDL--NKKVEKILQTAKV-GCKIISL 332 (406)
T ss_dssp EEEESS---CSTTCHHHHHHGGGCSEEEECC-TTCCHHH--HHHHHHHHTTCCT-TCEEEES
T ss_pred eeeeee---chhhccccccccccceEEEEec-ccCchHH--HHHHHHHHHhcCC-CcEEEEe
Confidence 22 111 221110 113568888764 3355444 4489999999999 9999875
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.02 E-value=2.1e-10 Score=101.25 Aligned_cols=114 Identities=21% Similarity=0.346 Sum_probs=75.1
Q ss_pred HHHHHHHHhc--CCCCCCeEEEEcCCcCHHHHHHHHHcCCC------ceEEEEcChhHHHHHHHHhcccC----CCCCCC
Q 019282 168 DVFEFLAEAS--HITPNSHVLEIGCGTLRVGVHFIRYLNPE------NFHCLERDELSLMAAFRYELPSQ----GLLHKR 235 (343)
Q Consensus 168 ~~~~~l~~~~--~l~~~~rVLDIGCGtG~~a~~la~~~~~~------~~~vvdid~s~~~~a~a~~~~~~----~~~~~~ 235 (343)
.+...+.+.+ +++++.+|||||||+|+.+..+++..... .++.++++... .+.++++... .....+
T Consensus 65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l--~~~a~~~l~~~~~~~~~~~n 142 (223)
T d1r18a_ 65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAEL--VRRSKANLNTDDRSMLDSGQ 142 (223)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHH--HHHHHHhhhhcchhhcCccE
Confidence 3555666655 78999999999999999999988865322 24455555544 4433332110 011125
Q ss_pred cEEEecccCCcCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEe
Q 019282 236 PIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSH 294 (343)
Q Consensus 236 ~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~ 294 (343)
+.+..++..+ .+...++||+|++...+.++++. +.+.||| ||++++..
T Consensus 143 v~~~~~d~~~--~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~-gG~lV~pv 190 (223)
T d1r18a_ 143 LLIVEGDGRK--GYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS-GGRLIVPV 190 (223)
T ss_dssp EEEEESCGGG--CCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE-EEEEEEEE
T ss_pred EEEEeccccc--ccccccceeeEEEEeechhchHH--------HHHhcCC-CcEEEEEE
Confidence 6666653322 23345789999999999888753 5789999 99998864
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=9.4e-09 Score=92.39 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 179 ITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 179 l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
++++.+|||+|||+|.+++.++.. +...++++|++ +.....++++...+...+++.++.++..++ ...+.||.|
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n--~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~---~~~~~~D~I 178 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMSAYNMDNRDF---PGENIADRI 178 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEEEECSCTTTC---CCCSCEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCC--HHHHHHHHHHHHHhCCCceEEEEEcchHHh---ccCCCCCEE
Confidence 578999999999999999999875 33344555554 455555555444333344677777755444 346789999
Q ss_pred EEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--cccccCCCHHHHHHHHHhcCCcEEE
Q 019282 259 YASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--IKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 259 vs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
++.... .. ..++..+.+.|+| ||.+.+... .+.......+.+.+.....|+++..
T Consensus 179 i~~~p~----~~--~~~l~~a~~~l~~-gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 179 LMGYVV----RT--HEFIPKALSIAKD-GAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp EECCCS----SG--GGGHHHHHHHEEE-EEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred EECCCC----ch--HHHHHHHHhhcCC-CCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence 875322 11 1267889999999 999865432 1222222356677778889998753
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.84 E-value=8.9e-09 Score=88.37 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=40.1
Q ss_pred CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 251 SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
..+.||+|+|.+++.++.++....+++++++.|+| ||.|++.+.
T Consensus 129 ~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p-GG~L~lG~s 172 (193)
T d1af7a2 129 VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP-DGLLFAGHS 172 (193)
T ss_dssp CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE-EEEEEECTT
T ss_pred CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC-CcEEEEecC
Confidence 35789999999999999999888899999999999 999998754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=1.1e-08 Score=94.85 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
++.....+. ..++++.+|||+|||+|.++..++.. +...++.+|+++ ...+.++++...+....++.++.++..+
T Consensus 132 qr~~r~~~~--~~~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~--~al~~a~~N~~~ngl~~~~~~~~~d~~~ 206 (324)
T d2as0a2 132 QRENRLALE--KWVQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSP--RAIETAKENAKLNGVEDRMKFIVGSAFE 206 (324)
T ss_dssp THHHHHHHG--GGCCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hhhHHHHHH--hhcCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCH--HHHHHHHHHHHHcCCCccceeeechhhh
Confidence 444445553 23578999999999999999998874 223445555555 4455445544433233356677665443
Q ss_pred cCCC--CCCCceeEEEEccccccCCch-------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH----HH
Q 019282 246 FTKF--GSGVVYDLIYASAVFLHMPDK-------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR----LT 312 (343)
Q Consensus 246 l~~~--~~~~~fDlIvs~~v~~hl~~~-------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~----L~ 312 (343)
.... ..+.+||+|++.......... ....++..+.++|+| ||.|+++.... ..+.+++.+. ..
T Consensus 207 ~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p-GG~lv~~s~s~---~~~~~~f~~~v~~a~~ 282 (324)
T d2as0a2 207 EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD-GGILVTCSCSQ---HVDLQMFKDMIIAAGA 282 (324)
T ss_dssp HHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE-EEEEEEEECCT---TSCHHHHHHHHHHHHH
T ss_pred hhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEEeCCc---cCCHHHHHHHHHHHHH
Confidence 3211 135689999986443222211 123478888999999 99998874222 2234555544 45
Q ss_pred hcCCc
Q 019282 313 SLGLE 317 (343)
Q Consensus 313 ~aGf~ 317 (343)
++|-.
T Consensus 283 ~~gr~ 287 (324)
T d2as0a2 283 KAGKF 287 (324)
T ss_dssp HTTEE
T ss_pred HcCCe
Confidence 55633
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=5.8e-08 Score=87.56 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=89.4
Q ss_pred CCCCCCCCCchhhhhhhhhccCCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH
Q 019282 139 NNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218 (343)
Q Consensus 139 ~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~ 218 (343)
+...-+|+|++++ +++.+.+...-.+..+|||+|||+|..+..++. .+...++++|+++...
T Consensus 85 ~~~vlIPRpeTE~-----------------lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al 146 (271)
T d1nv8a_ 85 EEGVFVPRPETEE-----------------LVELALELIRKYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAV 146 (271)
T ss_dssp CTTSCCCCTTHHH-----------------HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHH
T ss_pred ecCccCchhhhhh-----------------hhhhhhhhhccccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHH
Confidence 3446678887764 333333322223345899999999999999875 5667777777777666
Q ss_pred HHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEccccc-----------cCCch-------HHHHHHHHHH
Q 019282 219 MAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASAVFL-----------HMPDK-------LVWVGLERLA 280 (343)
Q Consensus 219 ~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~-----------hl~~~-------~~~~~L~~l~ 280 (343)
..+.. +........+..+..++..+... ...+.||+|+++--+- |-|.. ...-+-+-+.
T Consensus 147 ~~A~~--Na~~~~~~~~~~i~~~~~~~~~~-~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~ 223 (271)
T d1nv8a_ 147 EIARK--NAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG 223 (271)
T ss_dssp HHHHH--HHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH
T ss_pred HHHHH--HHHHcCCCceeEEeecccccccc-cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHH
Confidence 66644 33322223355555542222211 1236899999983221 11110 0111223356
Q ss_pred hccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCC
Q 019282 281 SKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGL 316 (343)
Q Consensus 281 r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf 316 (343)
+.|+| ||.+++.++.+. .+.+.+.+.+.||
T Consensus 224 ~~L~~-~G~l~~Eig~~Q-----~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 224 RYDTS-GKIVLMEIGEDQ-----VEELKKIVSDTVF 253 (271)
T ss_dssp HCCCT-TCEEEEECCTTC-----HHHHTTTSTTCEE
T ss_pred HhcCC-CCEEEEEECHHH-----HHHHHHHHHhCCE
Confidence 78999 999999875222 5677777888887
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=5e-09 Score=88.30 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+++.+.. .+.++.+|||+|||+|.+++.++.. +..++.+|.++.+...++++.+ .+... ++....+ ..
T Consensus 29 e~lf~~l~~--~~~~g~~vLDl~~G~G~~~i~a~~~----ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~--d~ 99 (171)
T d1ws6a1 29 KALFDYLRL--RYPRRGRFLDPFAGSGAVGLEAASE----GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPV--EV 99 (171)
T ss_dssp HHHHHHHHH--HCTTCCEEEEETCSSCHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCH--HH
T ss_pred HHHHHHhhc--cccCCCeEEEeccccchhhhhhhhc----cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeeh--hc
Confidence 345666653 4567889999999999999987763 2334445555555555554433 33322 3322222 11
Q ss_pred cCC--CCCCCceeEEEEccccccCCchHHHHHHHHH--HhccCCCCcEEEEEecc
Q 019282 246 FTK--FGSGVVYDLIYASAVFLHMPDKLVWVGLERL--ASKLRPYDGRIFVSHNI 296 (343)
Q Consensus 246 l~~--~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l--~r~LkP~GG~lvi~~~~ 296 (343)
+.. ....++||+|++.--++. .... .+..+ ..+|+| ||.+++.+..
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY~~-~~~~---~l~~l~~~~ll~~-~g~ivie~~~ 149 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPYAM-DLAA---LFGELLASGLVEA-GGLYVLQHPK 149 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTTS-CTTH---HHHHHHHHTCEEE-EEEEEEEEET
T ss_pred ccccccccCCccceeEEcccccc-CHHH---HHHHHHHcCCcCC-CeEEEEEecC
Confidence 110 113568999999765532 2222 23333 358999 9999988643
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=1.1e-08 Score=94.57 Aligned_cols=130 Identities=9% Similarity=-0.039 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--CCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--GSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~~~fDl 257 (343)
.++.+|||++||+|.++.+++.. ...++++|.+..+...++++.+.+... ++.++.++..++... ...++||+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g----~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc----CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCE
Confidence 36889999999999999988763 334555555556566556554433223 466676655443211 13568999
Q ss_pred EEEccccccCCc-------hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHH----HHHhcCCcE
Q 019282 258 IYASAVFLHMPD-------KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTK----RLTSLGLEY 318 (343)
Q Consensus 258 Ivs~~v~~hl~~-------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~----~L~~aGf~~ 318 (343)
|++..-...... .....++..+.++||| ||.|+++.... ....+++.+ .+.++|-+.
T Consensus 219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp-GG~Lv~~scs~---~~~~~~f~~~v~~a~~~a~~~~ 286 (318)
T d1wxxa2 219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATASCSH---HMTEPLFYAMVAEAAQDAHRLL 286 (318)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEECCT---TSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEeCCc---ccCHHHHHHHHHHHHHHcCCCE
Confidence 998643222111 1223578889999999 99998864221 233444444 455667443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.66 E-value=2e-08 Score=82.82 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
.++..|. +.-.|.+|||+|||+|.+++.++.. +...++.+|.++... ...++........++..++.++...+.
T Consensus 4 ~~fn~l~---~~~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~--~~~~~n~~~~~~~~~~~ii~~D~~~~l 77 (152)
T d2esra1 4 AIFNMIG---PYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQ--AIIQDNIIMTKAENRFTLLKMEAERAI 77 (152)
T ss_dssp HHHHHHC---SCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHH--HHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHH---hhCCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhh--hhhhhhhhhcccccchhhhcccccccc
Confidence 3455553 2235889999999999999987763 334555555555444 433443332222335677776544433
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHH--hccCCCCcEEEEEec
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLA--SKLRPYDGRIFVSHN 295 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~--r~LkP~GG~lvi~~~ 295 (343)
.. ..++||+|++...+. .......++.+. +.|+| ||.+++.+.
T Consensus 78 ~~-~~~~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~-~g~iiiE~~ 122 (152)
T d2esra1 78 DC-LTGRFDLVFLDPPYA---KETIVATIEALAAKNLLSE-QVMVVCETD 122 (152)
T ss_dssp HH-BCSCEEEEEECCSSH---HHHHHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred cc-cccccceeEechhhc---cchHHHHHHHHHHCCCcCC-CeEEEEEeC
Confidence 22 367899999865432 122233566654 57999 999998753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.1e-07 Score=82.84 Aligned_cols=134 Identities=14% Similarity=0.065 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC-cCC-C--CCCCcee
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD-FTK-F--GSGVVYD 256 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d-l~~-~--~~~~~fD 256 (343)
+..+|||||||+|..+..++...+...++++|+++.....+. ++.+.+....++.+...+..+ +.. . ..++.||
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~--~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK--KNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH--HHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH--HHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 346999999999999999999888777778888777766664 433333334455555432211 111 1 1356899
Q ss_pred EEEEccccccCCch---------------------------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCC
Q 019282 257 LIYASAVFLHMPDK---------------------------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG 303 (343)
Q Consensus 257 lIvs~~v~~hl~~~---------------------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~ 303 (343)
+|+|+--++...+. -...++++....+++ .|.+....+ ..-.
T Consensus 139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~-~g~~t~~ig----~~~~ 213 (250)
T d2h00a1 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKR-LRWYSCMLG----KKCS 213 (250)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGG-BSCEEEEES----STTS
T ss_pred EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhc-CcEEEEEec----chhh
Confidence 99999777532211 022345566677888 787754432 1123
Q ss_pred HHHHHHHHHhcCCcEEEe
Q 019282 304 GEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~~ 321 (343)
.+++.+.|++.|+..+..
T Consensus 214 l~~i~~~L~~~g~~~i~~ 231 (250)
T d2h00a1 214 LAPLKEELRIQGVPKVTY 231 (250)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCeEEE
Confidence 677889999999976543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.61 E-value=3.3e-08 Score=90.66 Aligned_cols=134 Identities=15% Similarity=0.038 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC--CCCCc
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF--GSGVV 254 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~--~~~~~ 254 (343)
...++.+|||+.||||.++..++. .+..|+.+|.+....+.++++.+ .++.+.++.++.++..++... ...+.
T Consensus 129 ~~~~~~rVLdlf~~tG~~sl~aa~----~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~ 204 (309)
T d2igta1 129 TADRPLKVLNLFGYTGVASLVAAA----AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGST 204 (309)
T ss_dssp HSSSCCEEEEETCTTCHHHHHHHH----TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred hccCCCeEEEecCCCcHHHHHHHh----CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence 345688999999999999999887 33456677777777777666544 345444567777655444211 12468
Q ss_pred eeEEEEccc-cc-------cCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH----HHhcCCcE
Q 019282 255 YDLIYASAV-FL-------HMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR----LTSLGLEY 318 (343)
Q Consensus 255 fDlIvs~~v-~~-------hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~----L~~aGf~~ 318 (343)
||+|++.-- |. .--.......+..+.++|+| ||.+++... .........+.+. +..+|-.+
T Consensus 205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~-~g~~ll~t~--~s~~~s~~~~~~~~~~~~~~ag~~v 277 (309)
T d2igta1 205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLVLTA--YSIRASFYSMHELMRETMRGAGGVV 277 (309)
T ss_dssp BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEEEEE--CCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC-CCCEEEEec--CCCCCCHHHHHHHHHHHHHhcCCcc
Confidence 999998421 10 00112333467788899999 887655431 1223344444444 44456443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.60 E-value=3.5e-08 Score=91.02 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC--CCCCce
Q 019282 178 HITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--GSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~~~f 255 (343)
.+.+|.+|||+.||+|.++.+++. .+...++.+|++......+..+. ...++...++.++.++..++... ...++|
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~-~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHF-EANHLDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHH-HHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhhCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHH-HHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 466789999999999999988765 23345667777776666654332 22444444677787755544211 134689
Q ss_pred eEEEEcccc-----ccCCc--hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHH----HHhcCCcEEEee
Q 019282 256 DLIYASAVF-----LHMPD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKR----LTSLGLEYIGKK 322 (343)
Q Consensus 256 DlIvs~~v~-----~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~----L~~aGf~~v~~~ 322 (343)
|+|++.--- ..... .....+++.+.++|+| ||.|+++... .+...+++.+. +.++|.+++...
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p-gG~l~~~scs---~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIASTNA---ANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEECC---TTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEeCC---ccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 999985221 01111 1233588899999999 9999887532 22334555443 455677766544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=7.8e-08 Score=82.38 Aligned_cols=117 Identities=15% Similarity=0.036 Sum_probs=76.1
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---
Q 019282 171 EFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--- 247 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--- 247 (343)
+.+.+.+.+.++..+||++||+|..+..+++.++...++++|.|+.++..+ +++... ...+..++.++-.++.
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a--~~~l~~--~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIA--EEKLKE--FSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHH--HHHTGG--GTTTEEEEECCGGGHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHH--HHhhcc--ccccccchhHHHhhHHHHH
Confidence 334445578899999999999999999999988776666666666555444 443221 1235666665222221
Q ss_pred -CCCCCCceeEEEEccccc--cC-----CchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 -KFGSGVVYDLIYASAVFL--HM-----PDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 -~~~~~~~fDlIvs~~v~~--hl-----~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+ ..++||.|+....+- ++ .-......|..+.++|+| ||++++.
T Consensus 89 ~~~-~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~-gG~l~ii 140 (192)
T d1m6ya2 89 KTL-GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP-GGRIVVI 140 (192)
T ss_dssp HHT-TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE-EEEEEEE
T ss_pred HHc-CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC-CCeeeee
Confidence 11 246899998754331 11 111234578999999999 9999765
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.2e-08 Score=87.73 Aligned_cols=113 Identities=17% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCc
Q 019282 169 VFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 169 ~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl 246 (343)
++..+.. ....++|||||||+|..+..+++.++. ..++.++.++.....+ ++..+ .+. .+++.+..+++.+.
T Consensus 50 lL~~L~~---~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A--~~~~~~ag~-~~~i~~~~Gda~e~ 123 (219)
T d2avda1 50 LLANLAR---LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG--RPLWRQAEA-EHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHH---HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH--HHHHHHTTC-TTTEEEEESCHHHH
T ss_pred HHHHHHH---ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHH--HHHHHhcCc-cceEEEEEeehhhc
Confidence 4444443 344569999999999999999998863 4556666666544444 44433 444 44777777754432
Q ss_pred C-CC---CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 T-KF---GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~-~~---~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. .. ...++||+|+...-- .....+++.+.++|+| ||.+++-
T Consensus 124 l~~~~~~~~~~~fD~ifiD~dk-----~~y~~~~~~~~~lL~~-GGvii~D 168 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDADK-----ENCSAYYERCLQLLRP-GGILAVL 168 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSCS-----TTHHHHHHHHHHHEEE-EEEEEEE
T ss_pred chhhhhhcccCCccEEEEeCCH-----HHHHHHHHHHHHHhcC-CcEEEEe
Confidence 1 11 135689999986322 2234588999999999 9999875
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.51 E-value=5.1e-08 Score=84.95 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcC-CCC---CCCc
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFT-KFG---SGVV 254 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~-~~~---~~~~ 254 (343)
+..+|||||||+|..+..+++.++. ..++.+|+++... +.++++.+ .|+. +++.++.++..+.. .+. ..+.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~--~~a~~~~~~~gl~-~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA--AITQQMLNFAGLQ-DKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH--HHHHHHHHHHTCG-GGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH--HHHHHHHHHcCCC-ccceeeeccccccccchhhcccccc
Confidence 4569999999999999999988754 4566666665444 44443333 4543 36788877554431 111 2457
Q ss_pred eeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEE
Q 019282 255 YDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFV 292 (343)
Q Consensus 255 fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi 292 (343)
||+|+..+.-. .......+.+..++|+| ||++++
T Consensus 133 ~D~ifiD~~~~---~~~~~~~l~~~~~lLkp-GGvIv~ 166 (214)
T d2cl5a1 133 LDMVFLDHWKD---RYLPDTLLLEKCGLLRK-GTVLLA 166 (214)
T ss_dssp EEEEEECSCGG---GHHHHHHHHHHTTCEEE-EEEEEE
T ss_pred cceeeeccccc---ccccHHHHHHHhCccCC-CcEEEE
Confidence 99998863221 11122257788899999 997654
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.40 E-value=1.3e-07 Score=83.12 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+++..+... ....+|||||+++|..+..+++.++. ..++.++.++. ..+.+++..+ .|. ..++.++.+++.+
T Consensus 49 ~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~--~~~~A~~~~~~~g~-~~~i~~~~g~a~~ 122 (227)
T d1susa1 49 QFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYELGLPVIKKAGV-DHKIDFREGPALP 122 (227)
T ss_dssp HHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHHHHHHHHHHTTC-GGGEEEEESCHHH
T ss_pred HHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccch--hHHHHHHHHHHhcc-ccceeeeehHHHH
Confidence 345555443 34569999999999999999998864 44555666554 4444454443 454 3477777775544
Q ss_pred cC-CC----CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 246 FT-KF----GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 246 l~-~~----~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. .+ ...++||+|+.-.-- .....+++.+.++|+| ||.+++-
T Consensus 123 ~L~~l~~~~~~~~~fD~iFiDa~k-----~~y~~~~e~~~~ll~~-gGiii~D 169 (227)
T d1susa1 123 VLDEMIKDEKNHGSYDFIFVDADK-----DNYLNYHKRLIDLVKV-GGVIGYD 169 (227)
T ss_dssp HHHHHHHCGGGTTCBSEEEECSCS-----TTHHHHHHHHHHHBCT-TCCEEEE
T ss_pred HHHHHHhccccCCceeEEEeccch-----hhhHHHHHHHHhhcCC-CcEEEEc
Confidence 32 11 124689999986322 2234589999999999 9998775
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.39 E-value=2.9e-06 Score=72.62 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 168 DVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 168 ~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
.+.+++++.+..+++.+|||.|||+|.++..+.+.... ..++++++++.... .. .....+.+ +.
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~-----------~~-~~~~~~~~---~~ 70 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----------LP-PWAEGILA---DF 70 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----------CC-TTEEEEES---CG
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh-----------hc-ccceeeee---eh
Confidence 46677888888889999999999999999888776543 45778888763211 11 12233433 22
Q ss_pred CCCCCCCceeEEEEccccccCCch---------------------------HHHHHHHHHHhccCCCCcEEEEEeccccc
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDK---------------------------LVWVGLERLASKLRPYDGRIFVSHNIKFC 299 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~---------------------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~ 299 (343)
........||+|+++..+...... ....++....+.|+| ||++.+..+..+.
T Consensus 71 ~~~~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~-~G~~~~I~p~~~l 149 (223)
T d2ih2a1 71 LLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP-GGVLVFVVPATWL 149 (223)
T ss_dssp GGCCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE-EEEEEEEEEGGGG
T ss_pred hccccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc-CCceEEEEeeeec
Confidence 223345789999998665322100 112367889999999 9998776555555
Q ss_pred cCCCHHHHHHHHHhcCC
Q 019282 300 SRLGGEECTKRLTSLGL 316 (343)
Q Consensus 300 ~~~~~~~l~~~L~~aGf 316 (343)
..-..+.+++.|.+.+.
T Consensus 150 ~~~~~~~lR~~l~~~~~ 166 (223)
T d2ih2a1 150 VLEDFALLREFLAREGK 166 (223)
T ss_dssp TCGGGHHHHHHHHHHSE
T ss_pred cCcchHHHHHHHHhcCC
Confidence 33335677777776653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.38 E-value=8.7e-07 Score=81.36 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-----CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-----ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG 241 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-----~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~ 241 (343)
+.+...+......+++.+|||.|||+|.++..+.+.+.. ..++++|+++.....+..+... .+. ......+
T Consensus 103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-~~~---~~~~~~~ 178 (328)
T d2f8la1 103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQ---KMTLLHQ 178 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTC---CCEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-hhh---hhhhhcc
Confidence 334444444456677789999999999999988765522 2355666666555444332111 122 3334433
Q ss_pred ccCCcCCCCCCCceeEEEEccccccCCch----------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHH
Q 019282 242 EDMDFTKFGSGVVYDLIYASAVFLHMPDK----------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGE 305 (343)
Q Consensus 242 ~~~dl~~~~~~~~fDlIvs~~v~~hl~~~----------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~ 305 (343)
+ .+. ....++||+|+++--+...... ....+++.+.+.|+| ||++++..+..+...-...
T Consensus 179 d--~~~-~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~-~G~~~~I~p~~~l~~~~~~ 254 (328)
T d2f8la1 179 D--GLA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP-GGYLFFLVPDAMFGTSDFA 254 (328)
T ss_dssp C--TTS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE-EEEEEEEEEGGGGGSTTHH
T ss_pred c--ccc-ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC-CCceEEEecCccccCchhH
Confidence 2 222 2246789999998665322211 112369999999999 9998776555555544467
Q ss_pred HHHHHHHhcC
Q 019282 306 ECTKRLTSLG 315 (343)
Q Consensus 306 ~l~~~L~~aG 315 (343)
.+++.|.+.+
T Consensus 255 ~lR~~L~~~~ 264 (328)
T d2f8la1 255 KVDKFIKKNG 264 (328)
T ss_dssp HHHHHHHHHE
T ss_pred HHHHHHHhCC
Confidence 7888777665
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.32 E-value=1.9e-06 Score=73.79 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
+..++..+...-++ .|.+|||+|||+|.+++.++. .+...++++|+|+.....+ +++. ..+.++.+ |
T Consensus 34 a~~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~a--r~N~------~~~~~~~~---D 100 (197)
T d1ne2a_ 34 AAYFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETA--KRNC------GGVNFMVA---D 100 (197)
T ss_dssp HHHHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHH--HHHC------TTSEEEEC---C
T ss_pred HHHHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHH--HHcc------ccccEEEE---e
Confidence 34455444444444 588999999999999877665 3445677777777665554 3321 13455554 4
Q ss_pred cCCCCCCCceeEEEEcccc
Q 019282 246 FTKFGSGVVYDLIYASAVF 264 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~ 264 (343)
+.++ ++.||+|+++--|
T Consensus 101 ~~~l--~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 101 VSEI--SGKYDTWIMNPPF 117 (197)
T ss_dssp GGGC--CCCEEEEEECCCC
T ss_pred hhhc--CCcceEEEeCccc
Confidence 4433 4689999998655
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=5.1e-06 Score=71.11 Aligned_cols=128 Identities=15% Similarity=0.080 Sum_probs=72.1
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCcee
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
.+--.|.+|||+|||+|.++..++. .+...++++|+|+.....+ +++.... .....++.+ |...+ .++||
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a--~~N~~~~--~~~~~~~~~---d~~~~--~~~fD 111 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVL--IENLGEF--KGKFKVFIG---DVSEF--NSRVD 111 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHH--HHHTGGG--TTSEEEEES---CGGGC--CCCCS
T ss_pred cCCCCCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHH--HHHHHHc--CCCceEEEC---chhhh--CCcCc
Confidence 3444578999999999999988775 3334567777776655555 3332221 123445544 33323 46899
Q ss_pred EEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 257 LIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 257 lIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
+|+++--+..........++.. .+.+ ++.++..+.... ...+-+.......|+.+...
T Consensus 112 ~Vi~nPP~~~~~~~~d~~~l~~---~~~~-~~~v~~ih~~~~---~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 112 IVIMNPPFGSQRKHADRPFLLK---AFEI-SDVVYSIHLAKP---EVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp EEEECCCCSSSSTTTTHHHHHH---HHHH-CSEEEEEEECCH---HHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEcCccccccccccHHHHHH---HHhh-cccchhcccchH---HHHHHHHHHHhhcCceEEEE
Confidence 9999877654433222223433 3445 555544432110 01334556677788875543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=7e-06 Score=75.95 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=95.9
Q ss_pred chHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccC
Q 019282 165 GGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDM 244 (343)
Q Consensus 165 ~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~ 244 (343)
..+.+++.+.+.+...++.+|||+-||+|.+++.|++.. ..+.+++++++....+ +++...+.. .+..++.++..
T Consensus 196 ~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A--~~na~~n~i-~n~~~~~~~~~ 270 (358)
T d1uwva2 196 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKG--QQNARLNGL-QNVTFYHENLE 270 (358)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHH--HHHHHHTTC-CSEEEEECCTT
T ss_pred hhhHHHHHHHHhhccCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHH--HHhHHhccc-ccceeeecchh
Confidence 456777888877888889999999999999999998743 3455566555555444 443332222 25667766544
Q ss_pred CcCCCC--CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 245 DFTKFG--SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 245 dl~~~~--~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
+..... ....||+|+..- |..-....++.+.+. +| .-.+|++-+..-. ..++. .|.+.||+.....
T Consensus 271 ~~~~~~~~~~~~~d~vilDP-----PR~G~~~~~~~l~~~-~~-~~ivYVSCnp~Tl----aRDl~-~l~~~gy~l~~i~ 338 (358)
T d1uwva2 271 EDVTKQPWAKNGFDKVLLDP-----ARAGAAGVMQQIIKL-EP-IRIVYVSCNPATL----ARDSE-ALLKAGYTIARLA 338 (358)
T ss_dssp SCCSSSGGGTTCCSEEEECC-----CTTCCHHHHHHHHHH-CC-SEEEEEESCHHHH----HHHHH-HHHHTTCEEEEEE
T ss_pred hhhhhhhhhhccCceEEeCC-----CCccHHHHHHHHHHc-CC-CEEEEEeCCHHHH----HHHHH-HHHHCCCeEeEEE
Confidence 432111 246799998741 111112255666553 67 6777787421110 22333 4667899999999
Q ss_pred eccccccc-hhHH
Q 019282 323 THDSLLFN-HYEI 334 (343)
Q Consensus 323 ~~~~l~~~-~~e~ 334 (343)
..|.+|.. |.|.
T Consensus 339 ~~D~FP~T~HvE~ 351 (358)
T d1uwva2 339 MLDMFPHTGHLES 351 (358)
T ss_dssp EECCSTTSSCCEE
T ss_pred EEecCCCCccEEE
Confidence 99999974 4553
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=2.2e-06 Score=72.35 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.++..+... -.+.+|||++||+|.+++.++... ...++.+|.+... ....+++.+... .....++..++.++
T Consensus 32 e~lfn~l~~~---~~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a--~~~~k~N~~~~~-~~~~~ii~~d~~~~ 104 (183)
T d2fpoa1 32 ETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAV--SQQLIKNLATLK-AGNARVVNSNAMSF 104 (183)
T ss_dssp HHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHH--HHHHHHHHHHTT-CCSEEEECSCHHHH
T ss_pred HHHHhhhhcc---cchhhhhhhhccccceeeeEEecC-cceeEEEEEeech--hhHHHHHHhhcc-ccceeeeeeccccc
Confidence 3455555432 246799999999999999877632 2345555555544 444444333221 22456666655555
Q ss_pred CCCCCCCceeEEEEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
... ...+||+|++.--+.. .. ....+..+.+ .|+| +|.+++.++
T Consensus 105 l~~-~~~~fDlIf~DPPY~~-~~--~~~~l~~l~~~~~L~~-~~iIiiE~~ 150 (183)
T d2fpoa1 105 LAQ-KGTPHNIVFVDPPFRR-GL--LEETINLLEDNGWLAD-EALIYVESE 150 (183)
T ss_dssp HSS-CCCCEEEEEECCSSST-TT--HHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred ccc-cccccCEEEEcCcccc-ch--HHHHHHHHHHCCCCCC-CeEEEEEec
Confidence 432 3678999999866532 22 2236666654 6999 999998754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=2.8e-06 Score=77.78 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CC-CCCCCcEEEecccCCcCCCCCCCcee
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QG-LLHKRPIIVRGEDMDFTKFGSGVVYD 256 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~-~~~~~~~~~~~~~~dl~~~~~~~~fD 256 (343)
+...+||.||.|.|..+..++++.+...++++++|+.-...+... +.. .+ ..+.++.++.+++..+..- .+++||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~-f~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRH-MPEWHQGAFDDPRAVLVIDDARAYLER-TEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEESCHHHHHHH-CCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhc-CcccccCccCCCceEEEEchHHHHhhh-cCCccc
Confidence 345799999999999999998876677889999998766655332 211 11 2344666776655544322 356899
Q ss_pred EEEEccc--ccc-CCc--hHHHHHHHHHHhccCCCCcEEEEEeccccccCCC-HHHHHHHHHhcCCcEEE
Q 019282 257 LIYASAV--FLH-MPD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG-GEECTKRLTSLGLEYIG 320 (343)
Q Consensus 257 lIvs~~v--~~h-l~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~-~~~l~~~L~~aGf~~v~ 320 (343)
+|+.-.. +.. .+. -...++++.+++.|+| ||+++......+..... ...+.+.+++. |..+.
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p-~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~ 221 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVR 221 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCC-CceEEEecCCcccchHHHHHHHHHHHHHh-CceEE
Confidence 9996432 111 111 1124589999999999 99998754322222111 23344455544 65554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=3.2e-06 Score=76.02 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--C-------CCCCCCcEEEecccCCcCCCC
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--Q-------GLLHKRPIIVRGEDMDFTKFG 250 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~-------~~~~~~~~~~~~~~~dl~~~~ 250 (343)
++..+||.||+|.|..+..++++ +...++++++|+.....+ ++... . ...+.++.++.+++..+..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a--~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~-- 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVS--KDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-- 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHH--HHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--
T ss_pred CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHH--HHhhhhccchhhhhhccCCCCceEEEChHHHHHh--
Confidence 44579999999999999988874 445788888888666555 33221 1 1234466777665444431
Q ss_pred CCCceeEEEEccccccCCch---HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 251 SGVVYDLIYASAVFLHMPDK---LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~---~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
.+++||+|+.-..- ..... ....+++.+++.|+| ||+++......+...-....+.+.|.++ |..+..
T Consensus 146 ~~~~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~-~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~ 216 (276)
T d1mjfa_ 146 NNRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNN-PGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYY 216 (276)
T ss_dssp HCCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEE-EEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEE
T ss_pred ccCCCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCC-CceEEEecCCcchhHHHHHHHHHHHHhh-CCeeEE
Confidence 25689999974332 22111 124589999999999 9999876432222111123344455555 665554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=3e-06 Score=76.88 Aligned_cols=136 Identities=18% Similarity=0.105 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
...+||-||.|.|..+..++++.+...++++++|+.....+... ... ....+.++.++.+++..+..- .++.||+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~-~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDvI 166 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY-LKQTSCGFDDPRAEIVIANGAEYVRK-FKNEFDVI 166 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHH-CHHHHGGGGCTTEEEEESCHHHHGGG-CSSCEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHH-HHhhcccccCCCcEEEhhhHHHHHhc-CCCCCCEE
Confidence 35699999999999999998876667789999998766655321 111 223455777777655555432 35689999
Q ss_pred EEccccccC-Cc--hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 259 YASAVFLHM-PD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 259 vs~~v~~hl-~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
++-..-... +. -....+++.+++.|+| ||.++......+........+.+.+++. |..+.
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~-~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~ 229 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAETEDPFYDIGWFKLAYRRISKV-FPITR 229 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEE-EEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEE
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCC-CcEEEEecCChhhhhHHHHHHHHHHHhh-cceeE
Confidence 975332211 11 1123589999999999 9999876433322111133444555555 55443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.03 E-value=3.1e-06 Score=71.43 Aligned_cols=118 Identities=11% Similarity=0.167 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.++..| .+...+.+|||+.||+|.+++.++... ...++.+|.+....... +++.+ .+. ..+..++.++...
T Consensus 30 ealFn~l---~~~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~--~~N~~~~~~-~~~~~i~~~D~~~ 102 (182)
T d2fhpa1 30 ESIFNMI---GPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVI--KENIAITKE-PEKFEVRKMDANR 102 (182)
T ss_dssp HHHHHHH---CSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHH--HHHHHHHTC-GGGEEEEESCHHH
T ss_pred HHHHHHH---HHhcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHH--HHHhhhhhc-ccccccccccchh
Confidence 3445544 234568899999999999999887732 34566666666554444 33322 222 2245566654443
Q ss_pred cCCC--CCCCceeEEEEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 246 FTKF--GSGVVYDLIYASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~~--~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
+... ....+||+|++.--+. ... ....++.+.+ .|+| ||.+++.++
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY~-~~~--~~~~l~~i~~~~~L~~-~giIi~E~~ 152 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPYA-KQE--IVSQLEKMLERQLLTN-EAVIVCETD 152 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCGG-GCC--HHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred hhhhhcccCCCcceEEechhhh-hhH--HHHHHHHHHHCCCCCC-CEEEEEEcC
Confidence 3211 1345899999876542 222 2236777754 7999 999988754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=9e-06 Score=72.95 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+...+||-||.|.|..+..++++.+...++++++|+.-...+... ... ....+.++.++.+++..+..- .+++||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~-~~~~~~~~~d~r~~i~~~D~~~~l~~-~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKF-LPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHH-CHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHh-ChhhcccccCCCeEEEechHHHHHhh-cCCCCCE
Confidence 345699999999999999999876767899999999776665332 111 223345666666654444322 3568999
Q ss_pred EEEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEE
Q 019282 258 IYASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYI 319 (343)
Q Consensus 258 Ivs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v 319 (343)
|+.-..-..-+. -....+++.+++.|+| ||.++......+...-....+.+.|++. |..+
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~-~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~v 213 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKE-DGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT 213 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCC-CceEEEecCCccccHHHHHHHHHhhhhh-cCce
Confidence 997532211111 1123489999999999 9999876432222111134455556655 4443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.99 E-value=1.1e-05 Score=70.77 Aligned_cols=94 Identities=11% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
+.+++.+++...+.++.+|||||||+|.++..+++.. ..++++++|....... ++... ...++.++.++..++
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l--~~~~~---~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTT--ENKLV---DHDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHH--HHHTT---TCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHH--HHHhh---cccchhhhhhhhhhc
Confidence 4577888888899999999999999999999999853 4567777776544333 33221 223677777755554
Q ss_pred CCCCCCCceeEEEEccccccCCch
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDK 270 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~ 270 (343)
. +. ......|+++.-+ ++..+
T Consensus 80 ~-~~-~~~~~~vv~NLPY-nIss~ 100 (235)
T d1qama_ 80 K-FP-KNQSYKIFGNIPY-NISTD 100 (235)
T ss_dssp C-CC-SSCCCEEEEECCG-GGHHH
T ss_pred c-cc-ccccceeeeeehh-hhhHH
Confidence 3 22 2223345555444 66555
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=6.2e-06 Score=74.62 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcc--cCCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELP--SQGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~--~~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+...+||=||.|.|..+..++++.+...++++++|+.....+... .. .....+.++..+.+++..+..-..++.||+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~-f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQF-FPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH-CHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHh-chhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 345699999999999999998876667889999998776665331 11 122334566677665444432123468999
Q ss_pred EEEccccccCC--chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 258 IYASAVFLHMP--DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 258 Ivs~~v~~hl~--~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
|+.-..-..-+ .-....+++.+++.|+| ||.++......+...-.-..+.+.+.+....++.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~ 221 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVN 221 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEE
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCC-CcEEEEecCCcHHHHHHHHHHHhhhhhhccccee
Confidence 99743221111 11234589999999999 9999887543222111134455566667655443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=3.5e-05 Score=66.16 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~d 245 (343)
+.+++-+.-...+ ++.+|||||+|.|.-+..++-..|...++.+|-.. ....+.++... -++ .++..+.++.++
T Consensus 52 rHi~DSl~~~~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~--KK~~FL~~~~~~L~L--~nv~v~~~R~E~ 126 (207)
T d1jsxa_ 52 RHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG--KRVRFLRQVQHELKL--ENIEPVQSRVEE 126 (207)
T ss_dssp HHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTC--SSEEEEECCTTT
T ss_pred HHhcchHhhhhhh-cCCceeeeeccCCceeeehhhhcccceEEEEecch--HHHHHHHHHHHHcCC--cceeeeccchhh
Confidence 3455555543344 45699999999999999999888777666666443 44444443322 333 256666665554
Q ss_pred cCCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec
Q 019282 246 FTKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN 295 (343)
Q Consensus 246 l~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~ 295 (343)
+. ...+||+|++.++- +.. .+++-+...+++ ||.+++.-+
T Consensus 127 ~~---~~~~fD~V~sRA~~----~~~--~ll~~~~~~l~~-~g~~~~~KG 166 (207)
T d1jsxa_ 127 FP---SEPPFDGVISRAFA----SLN--DMVSWCHHLPGE-QGRFYALKG 166 (207)
T ss_dssp SC---CCSCEEEEECSCSS----SHH--HHHHHHTTSEEE-EEEEEEEES
T ss_pred hc---cccccceehhhhhc----CHH--HHHHHHHHhcCC-CcEEEEECC
Confidence 43 45689999997553 333 388899999999 999988754
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.91 E-value=3.3e-05 Score=73.26 Aligned_cols=144 Identities=21% Similarity=0.195 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC-------------CceEEEEcChhHHHHHHHHhcccCCCCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP-------------ENFHCLERDELSLMAAFRYELPSQGLLH 233 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~-------------~~~~vvdid~s~~~~a~a~~~~~~~~~~ 233 (343)
+.+.+.+.+.+...++.+|||-+||+|.+...+.++... ..+++.++++.....+..+... .+...
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~~~ 226 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGIGT 226 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTCCS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCCcc
Confidence 567788888778888899999999999999888775532 3477888888776666543322 23322
Q ss_pred CCcEEEecccCCcCCCCCCCceeEEEEccccccCCc---------------hHHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 234 KRPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD---------------KLVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 234 ~~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~---------------~~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
.......+ +.........||+|+++--+..... .....++..+.+.|+| ||++.+..+..+
T Consensus 227 ~~~~i~~~---d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~-~G~~~iI~p~~~ 302 (425)
T d2okca1 227 DRSPIVCE---DSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT-GGRAAVVLPDNV 302 (425)
T ss_dssp SCCSEEEC---CTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE-EEEEEEEEEHHH
T ss_pred ccceeecC---chhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC-CCeEEEEechHH
Confidence 23333333 3332334678999999876632111 0122489999999999 999877654333
Q ss_pred ccCCC-HHHHHHHHHhcC
Q 019282 299 CSRLG-GEECTKRLTSLG 315 (343)
Q Consensus 299 ~~~~~-~~~l~~~L~~aG 315 (343)
...-+ ...+++.|.+.+
T Consensus 303 L~~~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 303 LFEAGAGETIRKRLLQDF 320 (425)
T ss_dssp HHCSTHHHHHHHHHHHHE
T ss_pred hhhhhhHHHHHHHHHHhc
Confidence 22222 467777776654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=8.5e-06 Score=73.51 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fDl 257 (343)
+...+||-||.|.|..+..+.++.+...++++++|+.....+... +.. ....+.++.++.+++..+..- ..++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~-~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKF-LPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH-CHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhh-chhhccccCCCCceEEEccHHHHHhc-CCCCCCE
Confidence 445799999999999999999876677888999998776666332 111 123345777776654444322 3568999
Q ss_pred EEEccccccCC--chHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 258 IYASAVFLHMP--DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 258 Ivs~~v~~hl~--~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
|++-..-..-+ .-....+++.+++.|+| ||.+++.....+...-....+.+.+++. |..+..
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~~ 218 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAY 218 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEE-EEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEE
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCC-CCeEEEeccchhhhHHHHHHHHHHHHhc-CCeeeE
Confidence 99853211111 11223479999999999 9999886433222111123344445444 666543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.84 E-value=1.2e-05 Score=73.40 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc--CCCCCCCcEEEecccCCcCCCCCCCceeEE
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS--QGLLHKRPIIVRGEDMDFTKFGSGVVYDLI 258 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~--~~~~~~~~~~~~~~~~dl~~~~~~~~fDlI 258 (343)
...+||-||.|.|..+..++++.+...++++++|+.....+... +.. ....+.++.++.+++..+..- ..+.||+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~-~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKF-LPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHH-CTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhh-chhhccccCCCCeEEEEchHHHHHHh-CCCCCCEE
Confidence 45699999999999999998866666788999988766655332 111 223345666665544444322 35689999
Q ss_pred EEccccccCCc--hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 259 YASAVFLHMPD--KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 259 vs~~v~~hl~~--~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
+.-..-..-+. -....+++.+++.|+| ||.++......+........+.+.+++. |..+.
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~-~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~ 245 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVT 245 (312)
T ss_dssp EECCC-------------HHHHHHHHEEE-EEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcCC-CcEEEEecCChHHhHHHHHHHHHHhhhc-cceEE
Confidence 98533221111 1234589999999999 9999886433322111123444455544 65554
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=8e-05 Score=62.36 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=75.1
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC------CC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK------FG 250 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~------~~ 250 (343)
.-++++.+|||+||++|.++..+.+..... ..++++|..+. . +.....++.++..+... ..
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~----------~--~i~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPM----------D--PIVGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCC----------C--CCTTEEEEESCTTSHHHHHHHHHHH
T ss_pred CccCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeecccc----------c--ccCCceEeecccccchhhhhhhhhc
Confidence 346888999999999999999998866543 23555554210 0 12245566653222110 01
Q ss_pred CCCceeEEEEccccccCCchHH---------HHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEE
Q 019282 251 SGVVYDLIYASAVFLHMPDKLV---------WVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIG 320 (343)
Q Consensus 251 ~~~~fDlIvs~~v~~hl~~~~~---------~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~ 320 (343)
..+.+|+|++-.++.-.+.... ...+.-+.++|+| ||.+++-.. .. ...+++...|. .=|+.+.
T Consensus 85 ~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~-gG~fV~K~F---~g-~~~~~l~~~l~-~~F~~V~ 157 (180)
T d1ej0a_ 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVVKVF---QG-EGFDEYLREIR-SLFTKVK 157 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEE---SS-TTHHHHHHHHH-HHEEEEE
T ss_pred cCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC-CCcEEEEEe---cC-ccHHHHHHHHH-hhcCEEE
Confidence 3467999999877754444332 2456677899999 999988642 11 12445555443 3354443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.77 E-value=7.9e-05 Score=65.22 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccCCcCCC-CCCCceeE
Q 019282 180 TPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDMDFTKF-GSGVVYDL 257 (343)
Q Consensus 180 ~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~dl~~~-~~~~~fDl 257 (343)
....+|+|||+|.|.-++.++-..+...++.+|-. ....++.+.... -++ .++..+.++.+++... ...+.||+
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~--~KK~~FL~~v~~~L~L--~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSL--NKRITFLEKLSEALQL--ENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHTC--SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecch--HHHHHHHHHHHHHhCC--CCcEEEeehhhhccccccccccceE
Confidence 35679999999999999999988887776666644 344444333222 334 2455666555544322 12468999
Q ss_pred EEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 258 IYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 258 Ivs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
|++.++. +.. .+++-+...+++ ||.+++.-+..+.. ..++....+...|++.....
T Consensus 145 v~sRAva----~l~--~ll~~~~~~l~~-~g~~i~~KG~~~~~--El~~a~~~~~~~~~~~~~v~ 200 (239)
T d1xdza_ 145 VTARAVA----RLS--VLSELCLPLVKK-NGLFVALKAASAEE--ELNAGKKAITTLGGELENIH 200 (239)
T ss_dssp EEEECCS----CHH--HHHHHHGGGEEE-EEEEEEEECC-CHH--HHHHHHHHHHHTTEEEEEEE
T ss_pred EEEhhhh----CHH--HHHHHHhhhccc-CCEEEEECCCChHH--HHHHHHHHHHHcCCEEEEEE
Confidence 9997544 333 388999999999 99998876432211 02334456778898876544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.74 E-value=0.0001 Score=64.48 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEc--ChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLER--DELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdi--d~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
+..++..+.+...++++.+|+|+|||.|.++..++...+..+..++++ |... .-..-..+..+.+.+. ..
T Consensus 51 ~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e------~P~~~~~~~~ni~~~~--~~ 122 (257)
T d2p41a1 51 GSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE------EPIPMSTYGWNLVRLQ--SG 122 (257)
T ss_dssp HHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC------CCCCCCSTTGGGEEEE--CS
T ss_pred HHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc------CCccccccccccccch--hh
Confidence 444666677777888999999999999999999887432223233332 2100 0000000111112222 12
Q ss_pred CCcCCCCCCCceeEEEEccccccCCchHH-----HHHHHHHHhccCCCCcEEEEE
Q 019282 244 MDFTKFGSGVVYDLIYASAVFLHMPDKLV-----WVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 244 ~dl~~~~~~~~fDlIvs~~v~~hl~~~~~-----~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.++... .++..|+|+|-..- ..+++.. ..+|+-+.+.|+| ||.|++-
T Consensus 123 ~dv~~l-~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~-gg~FvvK 174 (257)
T d2p41a1 123 VDVFFI-PPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSN-NTQFCVK 174 (257)
T ss_dssp CCTTTS-CCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCT-TCEEEEE
T ss_pred hhHHhc-CCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHccc-CCEEEEE
Confidence 344323 46789999997654 3443322 2467778899999 9988774
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.74 E-value=4.7e-06 Score=73.65 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+++.+.+.+++.++.+|||||||+|.++..|++.. ..++++++|. .+....++.. ....++.++.++..++
T Consensus 15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~--~l~~~l~~~~---~~~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDS--HLFNLSSEKL---KLNTRVTLIHQDILQF 87 (245)
T ss_dssp TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSC--SSSSSSSCTT---TTCSEEEECCSCCTTT
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecc--cchhhhhhhh---hhccchhhhhhhhhcc
Confidence 3466778888899999999999999999999999853 3455555555 3222222111 1123566666655444
Q ss_pred CCCCCCCceeEEEEccccccCCchHH
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDKLV 272 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~~~ 272 (343)
. + ....++.|+++.-+ |+..+..
T Consensus 88 ~-~-~~~~~~~vv~NLPY-~Ist~il 110 (245)
T d1yuba_ 88 Q-F-PNKQRYKIVGNIPY-HLSTQII 110 (245)
T ss_dssp T-C-CCSSEEEEEEECCS-SSCHHHH
T ss_pred c-c-ccceeeeEeeeeeh-hhhHHHH
Confidence 3 2 23456667766655 7776644
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.71 E-value=6e-05 Score=65.75 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred CCeEEEEcCCcCHHHHHHHHHc----CCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC--CCCce
Q 019282 182 NSHVLEIGCGTLRVGVHFIRYL----NPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG--SGVVY 255 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~~~----~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~f 255 (343)
..+|||||++.|..+..++..+ .+..++++|++++.... . .....++.++.++..+...+. ....+
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~------~--~~~~~~I~~i~gDs~~~~~~~~l~~~~~ 152 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI------P--ASDMENITLHQGDCSDLTTFEHLREMAH 152 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC------C--GGGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh------h--hccccceeeeecccccHHHHHHHHhcCC
Confidence 4589999999999888877654 34667788877632111 1 112346777777543332111 24468
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHh
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTS 313 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~ 313 (343)
|.|+.-.. |....... .+ .+...|+| ||.+++.+...+...+.++.+.+.+.+
T Consensus 153 dlIfID~~--H~~~~v~~-~~-~~~~lLk~-GG~iIveD~i~~~~~~~~~~~~e~~~~ 205 (232)
T d2bm8a1 153 PLIFIDNA--HANTFNIM-KW-AVDHLLEE-GDYFIIEDMIPYWYRYAPQLFSEYLGA 205 (232)
T ss_dssp SEEEEESS--CSSHHHHH-HH-HHHHTCCT-TCEEEECSCHHHHHHHCHHHHHHHHHT
T ss_pred CEEEEcCC--cchHHHHH-HH-HHhcccCc-CCEEEEEcCCccccccCchHHHHHHhh
Confidence 88876443 33333332 23 36689999 999999865444434445555554443
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.65 E-value=0.0001 Score=61.72 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhccc-CCCCCCCcEEEecccC
Q 019282 166 GRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPS-QGLLHKRPIIVRGEDM 244 (343)
Q Consensus 166 ~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~-~~~~~~~~~~~~~~~~ 244 (343)
.+.++..|.... .+.+|||+-||||.+++..+.. +...++.+|.+....... +++.+ .+..+........+..
T Consensus 31 realFn~l~~~~---~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~i--k~Ni~~l~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 31 KETLFNWLMPYI---HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQL--KKNLQTLKCSSEQAEVINQSSL 104 (183)
T ss_dssp HHHHHHHHHHHH---TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHH--HHHHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHhhhhc---ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhH--hhHHhhhccccccccccccccc
Confidence 344666664332 4679999999999999998863 334555555555443333 33222 3333323444443333
Q ss_pred CcCCCC-CCCceeEEEEccccccCCchHHHHHHHHHHh--ccCCCCcEEEEEec
Q 019282 245 DFTKFG-SGVVYDLIYASAVFLHMPDKLVWVGLERLAS--KLRPYDGRIFVSHN 295 (343)
Q Consensus 245 dl~~~~-~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r--~LkP~GG~lvi~~~ 295 (343)
++.... ...+||+|++.--+.. . .....++.+.. +|++ +|.+++.+.
T Consensus 105 ~~l~~~~~~~~fDlIFlDPPY~~-~--~~~~~l~~l~~~~~L~~-~~liiiE~~ 154 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDPPFHF-N--LAEQAISLLCENNWLKP-NALIYVETE 154 (183)
T ss_dssp HHTTSCCSSCCEEEEEECCCSSS-C--HHHHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred ccccccccCCcccEEEechhHhh-h--hHHHHHHHHHHhCCcCC-CcEEEEEec
Confidence 333222 3457999999766643 2 22336777754 7999 999999864
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00049 Score=61.50 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=92.0
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIV 239 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~ 239 (343)
.+.+..+..-.......+...++.+|||+.+|.|.=+.++++...+..+++.|++......... .....|. ....+
T Consensus 81 ~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~-~~~r~g~---~~~~~ 156 (284)
T d1sqga2 81 DGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD-NLKRLGM---KATVK 156 (284)
T ss_dssp GTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHH-HHHHTTC---CCEEE
T ss_pred ccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhh-hhhcccc---cceee
Confidence 3334333333333444468889999999999999999999987666667788888766544322 2223344 22233
Q ss_pred ecccCCcCCCCCCCceeEEEEc------cccccCCchH--------------HHHHHHHHHhccCCCCcEEEEEeccccc
Q 019282 240 RGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDKL--------------VWVGLERLASKLRPYDGRIFVSHNIKFC 299 (343)
Q Consensus 240 ~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~~--------------~~~~L~~l~r~LkP~GG~lvi~~~~~~~ 299 (343)
...+.........+.||.|+.- +++..-++-. ...+|..+.+.||| ||+++.+.= ...
T Consensus 157 ~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~-gG~lvYsTC-S~~ 234 (284)
T d1sqga2 157 QGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATC-SVL 234 (284)
T ss_dssp ECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEES-CCC
T ss_pred eccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC-CceEEEeee-cCc
Confidence 2222222212235689999963 3332222221 23678899999999 999876630 011
Q ss_pred cCCCHHHHHHHHHhc-CCcEEE
Q 019282 300 SRLGGEECTKRLTSL-GLEYIG 320 (343)
Q Consensus 300 ~~~~~~~l~~~L~~a-Gf~~v~ 320 (343)
..-+++.+...|++. +|+.+.
T Consensus 235 ~~ENE~vv~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 235 PEENSLQIKAFLQRTADAELCE 256 (284)
T ss_dssp GGGTHHHHHHHHHHCTTCEECS
T ss_pred hhhCHHHHHHHHHhCCCcEEec
Confidence 111367777788774 676654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.50 E-value=0.00038 Score=63.09 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=90.1
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCC-ceEEEEcChhHHHHHHHHhcccCCCCCCCcEE
Q 019282 160 GEPWAGGRDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPE-NFHCLERDELSLMAAFRYELPSQGLLHKRPII 238 (343)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~-~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~ 238 (343)
.+.+..+..-.......+...+|.+|||+.+|.|.=+.+++...... .+++.|++......... .....+. .++..
T Consensus 95 ~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~-~~~r~~~--~~i~~ 171 (313)
T d1ixka_ 95 TGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGV--LNVIL 171 (313)
T ss_dssp TTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTC--CSEEE
T ss_pred hceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHH-HHHHHHh--hcccc
Confidence 44443333333334444678899999999999999999998876543 34555555544333221 1122333 24444
Q ss_pred EecccCCcCCCCCCCceeEEEEc------cccccCCch--------------HHHHHHHHHHhccCCCCcEEEEEecccc
Q 019282 239 VRGEDMDFTKFGSGVVYDLIYAS------AVFLHMPDK--------------LVWVGLERLASKLRPYDGRIFVSHNIKF 298 (343)
Q Consensus 239 ~~~~~~dl~~~~~~~~fDlIvs~------~v~~hl~~~--------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~ 298 (343)
...+...+.. ....||.|+.- +++..-++. .....|....+.||| ||+++.+.= ..
T Consensus 172 ~~~d~~~~~~--~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~-gG~lVYsTC-Sl 247 (313)
T d1ixka_ 172 FHSSSLHIGE--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTC-SL 247 (313)
T ss_dssp ESSCGGGGGG--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEES-CC
T ss_pred cccccccccc--ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC-CcEEEEeec-cC
Confidence 5443333321 35689999973 233222211 123678889999999 999876530 01
Q ss_pred ccCCCHHHHHHHHHhcCCcEEEee
Q 019282 299 CSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 299 ~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
...-+++.+...|++.+|+.+...
T Consensus 248 ~~eENE~VV~~~L~~~~~~~~~~~ 271 (313)
T d1ixka_ 248 EPEENEFVIQWALDNFDVELLPLK 271 (313)
T ss_dssp CGGGTHHHHHHHHHHSSEEEECCC
T ss_pred ChHhHHHHHHHHHhcCCCEEeecc
Confidence 111136777888888888876544
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=0.00031 Score=58.74 Aligned_cols=135 Identities=19% Similarity=0.144 Sum_probs=83.3
Q ss_pred HHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC---
Q 019282 173 LAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF--- 249 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~--- 249 (343)
+.+.+.+.++..++|..||.|+.+..+++. ...+.++|.|+.. ...++++ ...+..++.+.-.++.+.
T Consensus 10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~a--i~~a~~~-----~~~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 10 ALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEA--VARAKGL-----HLPGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHH--HHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhH--HHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence 344457889999999999999999999884 3455666666644 4444432 223566666533333211
Q ss_pred CCCCceeEEEEccccc--cCCc-----hHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEe
Q 019282 250 GSGVVYDLIYASAVFL--HMPD-----KLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGK 321 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~--hl~~-----~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~ 321 (343)
...+.+|.|++...+- ++.+ ......|....+.|+| ||++++..... .....+.+.+++.+++.+..
T Consensus 81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~-gg~~~ii~fhs----~Ed~ivk~~~~e~~~k~i~k 154 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP-GGRLVVIAFHS----LEDRVVKRFLRESGLKVLTK 154 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE-EEEEEEEECSH----HHHHHHHHHHHHHCSEESCS
T ss_pred cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC-CCeEEEEeccc----chhHHHHHHHhhccceeccC
Confidence 1236799999854331 1111 1223468888999999 99987653100 01334677788888876554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00054 Score=61.08 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF 246 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl 246 (343)
..+.+.+.+...+.++..|||||+|+|.++..|++.. ..++++++|......- ++.........++.++.++ +
T Consensus 7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L--~~~~~~~~~~~~~~~i~~D---~ 79 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAEL--HKRVQGTPVASKLQVLVGD---V 79 (278)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHH--HHHHTTSTTGGGEEEEESC---T
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHH--HHHHhhhccccchhhhHHH---H
Confidence 4577788888899999999999999999999999863 4678888887554333 2222221222356666663 3
Q ss_pred CCCCCCCceeEEEEccccccCCch
Q 019282 247 TKFGSGVVYDLIYASAVFLHMPDK 270 (343)
Q Consensus 247 ~~~~~~~~fDlIvs~~v~~hl~~~ 270 (343)
..++.. .++.|+++.-+ ++..+
T Consensus 80 l~~~~~-~~~~vV~NLPY-~Iss~ 101 (278)
T d1zq9a1 80 LKTDLP-FFDTCVANLPY-QISSP 101 (278)
T ss_dssp TTSCCC-CCSEEEEECCG-GGHHH
T ss_pred hhhhhh-hhhhhhcchHH-HHHHH
Confidence 333322 35667776555 44443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00042 Score=67.14 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCC------------------CceEEEEcChhHHHHHHHHhccc
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNP------------------ENFHCLERDELSLMAAFRYELPS 228 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~------------------~~~~vvdid~s~~~~a~a~~~~~ 228 (343)
+.+.+.+.+.+...++.+|+|-+||+|.+...+.+++.. ..+++.++++.....+..+...
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l- 228 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL- 228 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh-
Confidence 567778887778888899999999999999887765421 2467888888776666543322
Q ss_pred CCCCCC---CcEEEecccCCcCCCCCCCceeEEEEccccccCCc------------hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 229 QGLLHK---RPIIVRGEDMDFTKFGSGVVYDLIYASAVFLHMPD------------KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 229 ~~~~~~---~~~~~~~~~~dl~~~~~~~~fDlIvs~~v~~hl~~------------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.... ......++... .+......||+|+++--|.--.. .....++..+.+.|+| ||++.+.
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~-~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-gGr~aiI 306 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLG-SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP-GGRAAVV 306 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTS-HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred hcccccccccchhhhhhhhh-hcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc-cCcEEEE
Confidence 121110 11111111000 00112357999999865521110 0112389999999999 9998776
Q ss_pred eccccccCCC-HHHHHHHHHhcC
Q 019282 294 HNIKFCSRLG-GEECTKRLTSLG 315 (343)
Q Consensus 294 ~~~~~~~~~~-~~~l~~~L~~aG 315 (343)
.+..+...-+ ...+++.|-+.+
T Consensus 307 lP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 307 VPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp EEHHHHHCCTHHHHHHHHHHHHE
T ss_pred EehHHhhhhhhhHHHHHHHHHcC
Confidence 5434332222 456777776554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00022 Score=62.80 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 167 RDVFEFLAEASHITPNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 167 ~~~~~~l~~~~~l~~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
..+++.+.+...+.++..|||||||+|.++..|++.. ..++++++|. .+....++.. ....+..++.++...
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~--~l~~~L~~~~---~~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDR--DLAARLQTHP---FLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCH--HHHHHHHTCT---TTGGGEEEECSCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC--CceEEEEecc--chhHHHHHHh---hhccchhHHhhhhhh
Confidence 4567778888888999999999999999999999843 4566666665 4444333321 122356677664443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.39 E-value=0.0028 Score=58.68 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCC-------------CCcEEEecccCCcC
Q 019282 181 PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLH-------------KRPIIVRGEDMDFT 247 (343)
Q Consensus 181 ~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~-------------~~~~~~~~~~~dl~ 247 (343)
++.+|||..||+|..++..+...+...++..|+++........+... .+..+ ..+.....++..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~l-N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHh-cCccccccccccccccccceeEeehhhhhhhh
Confidence 56799999999999999888877766777888888776666433211 11110 01111111111111
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......||+|..-- .+.+.- +|+...+.++. ||.|.++
T Consensus 124 -~~~~~~fDvIDiDP----fGs~~p--fldsAi~a~~~-~Gll~vT 161 (375)
T d2dula1 124 -AERHRYFHFIDLDP----FGSPME--FLDTALRSAKR-RGILGVT 161 (375)
T ss_dssp -HHSTTCEEEEEECC----SSCCHH--HHHHHHHHEEE-EEEEEEE
T ss_pred -HhhcCcCCcccCCC----CCCcHH--HHHHHHHHhcc-CCEEEEE
Confidence 01245799998753 333333 89999999999 9999998
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.029 Score=50.41 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=42.6
Q ss_pred cCCCccchHHHHHHHHHhcCCC------CCCeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHH
Q 019282 159 YGEPWAGGRDVFEFLAEASHIT------PNSHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSL 218 (343)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~l~------~~~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~ 218 (343)
||-.+=..+.+.+.+.+.+.+. .+..|||||.|.|.++..+.+......+.++++|....
T Consensus 15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~ 80 (322)
T d1i4wa_ 15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY 80 (322)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH
T ss_pred ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 4444434456667777666553 45689999999999999999876555677887777543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.0017 Score=53.49 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc--
Q 019282 170 FEFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF-- 246 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl-- 246 (343)
+..+.+...+++|.+||-+|+|. |.++..+++..+...+.+++.++.. .+.+++... ...+.....+.
T Consensus 17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~--~~~a~~lGa-------~~vi~~~~~~~~~ 87 (182)
T d1vj0a2 17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR--LKLAEEIGA-------DLTLNRRETSVEE 87 (182)
T ss_dssp HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH--HHHHHHTTC-------SEEEETTTSCHHH
T ss_pred HHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccc--ccccccccc-------eEEEeccccchHH
Confidence 34444445788999999999984 7777888887654455566655544 444454321 11222112221
Q ss_pred -----CCCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 -----TKFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 -----~~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+......+|+|+-. .+.+. .++...+.|+| ||++++.
T Consensus 88 ~~~~i~~~~~~~g~Dvvid~-----vG~~~---~~~~a~~~l~~-~G~iv~~ 130 (182)
T d1vj0a2 88 RRKAIMDITHGRGADFILEA-----TGDSR---ALLEGSELLRR-GGFYSVA 130 (182)
T ss_dssp HHHHHHHHTTTSCEEEEEEC-----SSCTT---HHHHHHHHEEE-EEEEEEC
T ss_pred HHHHHHHhhCCCCceEEeec-----CCchh---HHHHHHHHhcC-CCEEEEE
Confidence 111123469998753 23222 57889999999 9998765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.013 Score=51.97 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcCC-CceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCC-CCCc
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLNP-ENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFG-SGVV 254 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~~-~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~ 254 (343)
+...++.+|||+.+|.|+=+.+++....+ ..++++|++......... .....|.. ++.....+...+.... ..+.
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~-~l~r~g~~--~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT-LLARAGVS--CCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCC--SEEEEECCGGGSCTTCGGGTT
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHH-HHHhcCcc--ceeeeehhhhhhcccccccce
Confidence 57788999999999999999999887654 446677777655433322 22223442 3444443322222111 2357
Q ss_pred eeEEEEc------cccccCCch----------------HHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHH
Q 019282 255 YDLIYAS------AVFLHMPDK----------------LVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLT 312 (343)
Q Consensus 255 fDlIvs~------~v~~hl~~~----------------~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~ 312 (343)
||.|+.. +++..-++. .....+.... .++| ||.++.+.- .....-+.+.+...|+
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~-gG~lvYsTC-Sl~~~ENe~vV~~~L~ 243 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPS-LQRLVYSTC-SLCQEENEDVVRDALQ 243 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTT-CCEEEEEES-CCCGGGTHHHHHHHHT
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hccc-ccEEEEeec-cCChhHhHHHHHHHHH
Confidence 9999974 222111110 0112444444 4799 998866531 0111112566667776
Q ss_pred hcC
Q 019282 313 SLG 315 (343)
Q Consensus 313 ~aG 315 (343)
+.+
T Consensus 244 ~~~ 246 (293)
T d2b9ea1 244 QNP 246 (293)
T ss_dssp TST
T ss_pred hCC
Confidence 653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.92 E-value=0.0026 Score=53.29 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=64.9
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----CC
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----KF 249 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~~ 249 (343)
+..+++++.+||-+|||. |..+..+++......+.++|.++..+. .+++.. . ...+.....++. +.
T Consensus 19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~--~a~~~G---a----~~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA--HAKAQG---F----EIADLSLDTPLHEQIAAL 89 (195)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH--HHHHTT---C----EEEETTSSSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhH--hhhhcc---c----cEEEeCCCcCHHHHHHHH
Confidence 347899999999999998 667777777766666667776665444 444431 1 112211112221 01
Q ss_pred CCCCceeEEEEccccc------c-CCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFL------H-MPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~------h-l~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.....+|+++-.-... + +........++.+.++++| ||++++.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~-gG~v~~~ 139 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRV-AGKIGIP 139 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEE-EEEEEEC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhc-CCEEEEe
Confidence 1234689988542211 1 1111112379999999999 9999876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.012 Score=47.63 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC-
Q 019282 172 FLAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK- 248 (343)
Q Consensus 172 ~l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~- 248 (343)
.+.+..+++++.+||-.|+ |.|..+..+++..+ +.++.++.++...+.+++. |. ...+.....++.+
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~~~~~~~~~~---Ga----~~vi~~~~~~~~~~ 88 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTEEGQKIVLQN---GA----HEVFNHREVNYIDK 88 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHT---TC----SEEEETTSTTHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccC---ccccccccccccccccccc---Cc----ccccccccccHHHH
Confidence 3445567899999999996 57777778887643 4455544444444444442 22 1122222233321
Q ss_pred ---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 ---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+.. ... ..++...++|+| +|+++..
T Consensus 89 i~~~t~~~g~d~v~d~-----~g~----~~~~~~~~~l~~-~G~iv~~ 126 (174)
T d1yb5a2 89 IKKYVGEKGIDIIIEM-----LAN----VNLSKDLSLLSH-GGRVIVV 126 (174)
T ss_dssp HHHHHCTTCEEEEEES-----CHH----HHHHHHHHHEEE-EEEEEEC
T ss_pred hhhhhccCCceEEeec-----ccH----HHHHHHHhccCC-CCEEEEE
Confidence 1124579999874 232 267889999999 9999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.36 E-value=0.0057 Score=50.06 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=62.3
Q ss_pred HhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC----CC
Q 019282 175 EASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT----KF 249 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~----~~ 249 (343)
+..+++++.+||=+|||. |.++..+++......+.++|.+. ...+.+++.. . ...+.....++. +.
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~--~r~~~a~~lG---a----~~~i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP--ICVEAAKFYG---A----TDILNYKNGHIEDQVMKL 91 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH--HHHHHHHHHT---C----SEEECGGGSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchh--hhHHHHHhhC---c----cccccccchhHHHHHHHH
Confidence 457899999999999996 88888888876655566666554 4444444432 1 112221112211 11
Q ss_pred CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 ~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.....+|+|+-. .+... .++...++++| +|++++.
T Consensus 92 t~g~G~D~vid~-----~g~~~---~~~~a~~~~~~-~G~iv~~ 126 (174)
T d1jqba2 92 TNGKGVDRVIMA-----GGGSE---TLSQAVKMVKP-GGIISNI 126 (174)
T ss_dssp TTTSCEEEEEEC-----SSCTT---HHHHHHHHEEE-EEEEEEC
T ss_pred hhccCcceEEEc-----cCCHH---HHHHHHHHHhc-CCEEEEE
Confidence 123459998763 22222 57888999999 9999875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.34 E-value=0.04 Score=44.50 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=80.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+..+.+..+++++.+||=+|||. |..+..+++......+.+++.++.. .+.++++. . ...+..+..+..+
T Consensus 17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k--~~~a~~~G---a----~~~i~~~~~~~~~ 87 (174)
T d1f8fa2 17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESR--LELAKQLG---A----THVINSKTQDPVA 87 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHH--HHHHHHHT---C----SEEEETTTSCHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHH--HHHHHHcC---C----eEEEeCCCcCHHH
Confidence 34455567899999999999984 4456666776666655666665543 33334432 1 1122222222211
Q ss_pred ----CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEec--cccccCCCHHHHHHHHHhcCCcEEEee
Q 019282 249 ----FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHN--IKFCSRLGGEECTKRLTSLGLEYIGKK 322 (343)
Q Consensus 249 ----~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~--~~~~~~~~~~~l~~~L~~aGf~~v~~~ 322 (343)
. .++.+|+|+-. .+... .++...++++| +|++++.-. ......+....+ -..+.+.....
T Consensus 88 ~i~~~-t~gg~D~vid~-----~G~~~---~~~~~~~~~~~-~G~i~~~G~~~~~~~~~~~~~~~----~~k~~~i~Gs~ 153 (174)
T d1f8fa2 88 AIKEI-TDGGVNFALES-----TGSPE---ILKQGVDALGI-LGKIAVVGAPQLGTTAQFDVNDL----LLGGKTILGVV 153 (174)
T ss_dssp HHHHH-TTSCEEEEEEC-----SCCHH---HHHHHHHTEEE-EEEEEECCCCSTTCCCCCCHHHH----HHTTCEEEECS
T ss_pred HHHHH-cCCCCcEEEEc-----CCcHH---HHHHHHhcccC-ceEEEEEeecCCCcccccCHHHH----HHCCCEEEEEE
Confidence 1 24579988753 33332 67889999999 999987521 111112222222 23555555543
Q ss_pred eccccccchhHHhhhhhcc
Q 019282 323 THDSLLFNHYEIWFEFRRS 341 (343)
Q Consensus 323 ~~~~l~~~~~e~w~~~~~~ 341 (343)
..+..+...++....+.++
T Consensus 154 ~g~~~~~~~~~~~~~l~~~ 172 (174)
T d1f8fa2 154 EGSGSPKKFIPELVRLYQQ 172 (174)
T ss_dssp GGGSCHHHHHHHHHHHHHT
T ss_pred ecCCChHHHHHHHHHHHHc
Confidence 3333333345555555443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.18 E-value=0.032 Score=44.60 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=57.8
Q ss_pred hcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec-ccCCcCCC----
Q 019282 176 ASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG-EDMDFTKF---- 249 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~-~~~dl~~~---- 249 (343)
..+++++.+||-+||| .|.++..+++..+ ..+.++ +.+....+.+++... ...+... ...+..+.
T Consensus 21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v--~~~~~r~~~a~~~ga------~~~~~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCT--ARSPRRLEVAKNCGA------DVTLVVDPAKEEESSIIERI 91 (170)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEE--ESCHHHHHHHHHTTC------SEEEECCTTTSCHHHHHHHH
T ss_pred HhCCCCCCEEEEEcccccchhhHhhHhhhc-cccccc--chHHHHHHHHHHcCC------cEEEeccccccccchhhhhh
Confidence 4578999999999998 5666666776644 344444 444455555554321 1111110 00111000
Q ss_pred --CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 --GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 --~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...+.+|+|+-. .+.+ ..++...++++| +|++++.
T Consensus 92 ~~~~g~g~D~vid~-----~g~~---~~~~~a~~~~~~-~G~iv~~ 128 (170)
T d1e3ja2 92 RSAIGDLPNVTIDC-----SGNE---KCITIGINITRT-GGTLMLV 128 (170)
T ss_dssp HHHSSSCCSEEEEC-----SCCH---HHHHHHHHHSCT-TCEEEEC
T ss_pred hcccccCCceeeec-----CCCh---HHHHHHHHHHhc-CCceEEE
Confidence 013468888753 2332 268889999999 9999876
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.011 Score=47.79 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec-ccCCcC
Q 019282 170 FEFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG-EDMDFT 247 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~-~~~dl~ 247 (343)
+..+. ..+++++.+||-+|+| .|.++..+++... ..+.+++.++.. .+.++++ |. . ..+.. +..+..
T Consensus 17 ~~al~-~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k--~~~a~~l---Ga---~-~~i~~~~~~~~~ 85 (168)
T d1piwa2 17 YSPLV-RNGCGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRK--REDAMKM---GA---D-HYIATLEEGDWG 85 (168)
T ss_dssp HHHHH-HTTCSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTT--HHHHHHH---TC---S-EEEEGGGTSCHH
T ss_pred HHHHH-HhCcCCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhH--HHHhhcc---CC---c-EEeeccchHHHH
Confidence 33343 4689999999999998 6777777777665 345556655543 4444443 21 1 11211 111111
Q ss_pred CCCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 KFGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
. ...+.+|+|+..-.-.+-. .+....+.|+| +|++++.
T Consensus 86 ~-~~~~~~d~vi~~~~~~~~~------~~~~~~~~l~~-~G~iv~~ 123 (168)
T d1piwa2 86 E-KYFDTFDLIVVCASSLTDI------DFNIMPKAMKV-GGRIVSI 123 (168)
T ss_dssp H-HSCSCEEEEEECCSCSTTC------CTTTGGGGEEE-EEEEEEC
T ss_pred H-hhhcccceEEEEecCCccc------hHHHHHHHhhc-cceEEEe
Confidence 1 1246799887642221110 24567899999 9999875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.61 E-value=0.11 Score=42.01 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=65.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC--cC
Q 019282 171 EFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD--FT 247 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d--l~ 247 (343)
..+.+...++++.+||=+|||. |.++..+++......+.+++.+.... +.++++.. ...+.....+ ..
T Consensus 18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~--~~a~~~Ga-------~~~i~~~~~~~~~~ 88 (174)
T d1e3ia2 18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF--PKAKALGA-------TDCLNPRELDKPVQ 88 (174)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHTTC-------SEEECGGGCSSCHH
T ss_pred HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH--HHHHHhCC-------CcccCCccchhhhh
Confidence 3344557889999999999997 88888888887766666777666544 43454321 1112111111 00
Q ss_pred C---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCC-cEEEEE
Q 019282 248 K---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYD-GRIFVS 293 (343)
Q Consensus 248 ~---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~G-G~lvi~ 293 (343)
. ....+.+|+|+-. .+.+. .++...+.++| | |++++.
T Consensus 89 ~~~~~~~~~G~d~vie~-----~G~~~---~~~~a~~~~~~-g~G~~v~v 129 (174)
T d1e3ia2 89 DVITELTAGGVDYSLDC-----AGTAQ---TLKAAVDCTVL-GWGSCTVV 129 (174)
T ss_dssp HHHHHHHTSCBSEEEES-----SCCHH---HHHHHHHTBCT-TTCEEEEC
T ss_pred hhHhhhhcCCCcEEEEe-----cccch---HHHHHHHHhhc-CCeEEEec
Confidence 0 0023568888653 33332 68999999999 8 899876
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.39 E-value=0.0072 Score=52.61 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=59.6
Q ss_pred HHHHHhcCCCCC--CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc---ccCCCC-----CCCcEEEe
Q 019282 171 EFLAEASHITPN--SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL---PSQGLL-----HKRPIIVR 240 (343)
Q Consensus 171 ~~l~~~~~l~~~--~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~---~~~~~~-----~~~~~~~~ 240 (343)
+.|.+..+++++ .+|||.-||.|+.+..++.. +..|+.++.++...+..+.. ...+.. ..++.++.
T Consensus 76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~----G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC----CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 345556677665 48999999999999999973 34466666665554433221 111100 12567777
Q ss_pred cccCCcCCCCCCCceeEEEEccccccCCc
Q 019282 241 GEDMDFTKFGSGVVYDLIYASAVFLHMPD 269 (343)
Q Consensus 241 ~~~~dl~~~~~~~~fDlIvs~~v~~hl~~ 269 (343)
++..++..- ..+.||+|+.--||.+-..
T Consensus 152 ~Ds~~~L~~-~~~~~DvIYlDPMFp~~~K 179 (250)
T d2oyra1 152 ASSLTALTD-ITPRPQVVYLDPMFPHKQK 179 (250)
T ss_dssp SCHHHHSTT-CSSCCSEEEECCCCCCCCC
T ss_pred CcHHHHHhc-cCCCCCEEEECCCCccccc
Confidence 765555432 3567999999999976543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.29 E-value=0.16 Score=46.01 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCeEEEEcCCcCHHHHHHHH--------Hc------CCCce--EEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCC
Q 019282 182 NSHVLEIGCGTLRVGVHFIR--------YL------NPENF--HCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMD 245 (343)
Q Consensus 182 ~~rVLDIGCGtG~~a~~la~--------~~------~~~~~--~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~d 245 (343)
..+|.|+||.+|..++.+.. .+ +...+ ..-|+..+.-..-+ +.+....- .....++.+-.-.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF-~~L~~~~~-~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIF-RSLPIEND-VDGVCFINGVPGS 129 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHH-TTTTTSCS-CTTCEEEEEEESC
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHH-Hhcccccc-CCCCeEEEecCCc
Confidence 36799999999999854332 10 11223 33444333322222 12211111 1122344332223
Q ss_pred c-CCCCCCCceeEEEEccccccCCc-------------------------------hHHHHHHHHHHhccCCCCcEEEEE
Q 019282 246 F-TKFGSGVVYDLIYASAVFLHMPD-------------------------------KLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 246 l-~~~~~~~~fDlIvs~~v~~hl~~-------------------------------~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
| ..+.++++.|++++...+||+.. .++..+|+.=.+-|+| ||+++++
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~-GG~mvl~ 208 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP-GGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT-TCEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 3 22336789999999999999753 0234678888889999 9999886
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.12 Score=41.10 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=75.2
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC-----
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF----- 249 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~----- 249 (343)
..+++++.+||=+|||. |.++..+++......+.++|.++..+. .++++. . . ..+.....+..+.
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~--~a~~~G---a---~-~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS--KAKEIG---A---D-LVLQISKESPQEIARKVE 91 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH--HHHHTT---C---S-EEEECSSCCHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH--HHHHhC---C---c-cccccccccccccccccc
Confidence 45789999999999985 445555566655555666666665444 345432 1 1 1111111111100
Q ss_pred -CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEEeccccccCCCHHHHHHHHHhcCCcEEEeeeccccc
Q 019282 250 -GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLGGEECTKRLTSLGLEYIGKKTHDSLL 328 (343)
Q Consensus 250 -~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~~~~l~~~L~~aGf~~v~~~~~~~l~ 328 (343)
.....+|+|+-. .+.+. .++...++++| ||++++.-........... ..+ ..+.+++....+
T Consensus 92 ~~~g~g~Dvvid~-----~G~~~---~~~~a~~~~~~-gG~iv~~G~~~~~~~~~~~---~~~-~k~l~i~Gs~~~---- 154 (171)
T d1pl8a2 92 GQLGCKPEVTIEC-----TGAEA---SIQAGIYATRS-GGTLVLVGLGSEMTTVPLL---HAA-IREVDIKGVFRY---- 154 (171)
T ss_dssp HHHTSCCSEEEEC-----SCCHH---HHHHHHHHSCT-TCEEEECSCCCSCCCCCHH---HHH-HTTCEEEECCSC----
T ss_pred ccCCCCceEEEec-----cCCch---hHHHHHHHhcC-CCEEEEEecCCCCCccCHH---HHH-HCCcEEEEEeCC----
Confidence 013468988763 33332 68899999999 9999886322211222222 222 245666554321
Q ss_pred cchhHHhhhhhccC
Q 019282 329 FNHYEIWFEFRRSG 342 (343)
Q Consensus 329 ~~~~e~w~~~~~~~ 342 (343)
...|+.-+++.+++
T Consensus 155 ~~~~~~al~li~~g 168 (171)
T d1pl8a2 155 CNTWPVAISMLASK 168 (171)
T ss_dssp SSCHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHcC
Confidence 13455555555543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.20 E-value=0.091 Score=41.65 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=54.6
Q ss_pred hcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC---CC
Q 019282 176 ASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF---GS 251 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~---~~ 251 (343)
..+++++.+||=+|+|. |..+..+++... ..++.++.++...+.+++.. . ...+.....+..+. ..
T Consensus 22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G---~~Vi~~~~~~~~~~~a~~~G---a----~~~i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 22 QTNARPGQWVAISGIGGLGHVAVQYARAMG---LHVAAIDIDDAKLELARKLG---A----SLTVNARQEDPVEAIQRDI 91 (166)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTT---C----SEEEETTTSCHHHHHHHHH
T ss_pred HhCCCCCCEEEEeeccccHHHHHHHHHHcC---CccceecchhhHHHhhhccC---c----cccccccchhHHHHHHHhh
Confidence 36789999999999974 555566666543 34554555555555555432 1 11222211222100 01
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.+|.|++... . ..++...+.|+| ||++++.
T Consensus 92 ~g~~~~i~~~~~------~---~~~~~~~~~l~~-~G~iv~~ 123 (166)
T d1llua2 92 GGAHGVLVTAVS------N---SAFGQAIGMARR-GGTIALV 123 (166)
T ss_dssp SSEEEEEECCSC------H---HHHHHHHTTEEE-EEEEEEC
T ss_pred cCCccccccccc------c---hHHHHHHHHhcC-CcEEEEE
Confidence 233445444221 1 267889999999 9999875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.11 E-value=0.15 Score=40.51 Aligned_cols=101 Identities=12% Similarity=0.158 Sum_probs=61.1
Q ss_pred HhcCCCCCCeEEEEcC-C-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC----
Q 019282 175 EASHITPNSHVLEIGC-G-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK---- 248 (343)
Q Consensus 175 ~~~~l~~~~rVLDIGC-G-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~---- 248 (343)
+..+++++.+||=+|| | .|..+..+++......+.+++.+... .+.+++. |. ...+.....++.+
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~--~~~~~~~---Ga----~~~i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA--VEAAKRA---GA----DYVINASMQDPLAEIRR 91 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH--HHHHHHH---TC----SEEEETTTSCHHHHHHH
T ss_pred HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhh--HHHHHHc---CC----ceeeccCCcCHHHHHHH
Confidence 3468999999999997 3 56666777776665566666666543 3333432 11 1122222222211
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+.||+|+-.. +... .++...+.++| ||++++.
T Consensus 92 ~~~~~~~d~vid~~-----g~~~---~~~~a~~~l~~-~G~iv~~ 127 (170)
T d1jvba2 92 ITESKGVDAVIDLN-----NSEK---TLSVYPKALAK-QGKYVMV 127 (170)
T ss_dssp HTTTSCEEEEEESC-----CCHH---HHTTGGGGEEE-EEEEEEC
T ss_pred Hhhcccchhhhccc-----ccch---HHHhhhhhccc-CCEEEEe
Confidence 11245699988642 2222 57788999999 9999876
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.79 E-value=0.3 Score=39.15 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC
Q 019282 170 FEFLAEASHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT 247 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~ 247 (343)
+..+.+..++++|.+||=.|+| .|..+..+++.. +++++.++.+....+..++. +. . ..+.....+..
T Consensus 18 ~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~---Ga---~-~vi~~~~~~~~ 87 (182)
T d1v3va2 18 YFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKIAYLKQI---GF---D-AAFNYKTVNSL 87 (182)
T ss_dssp HHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHT---TC---S-EEEETTSCSCH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc---CCEEEEeCCCHHHHHHHHhh---hh---h-hhcccccccHH
Confidence 3445566788999999987774 566777777764 44566555555445444432 21 1 12222222221
Q ss_pred C----CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 248 K----FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 248 ~----~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+ ......+|+|+- .++.+ .+++..++|+| ||++++.
T Consensus 88 ~~~~~~~~~~Gvd~v~D-----~vG~~----~~~~~~~~l~~-~G~~v~~ 127 (182)
T d1v3va2 88 EEALKKASPDGYDCYFD-----NVGGE----FLNTVLSQMKD-FGKIAIC 127 (182)
T ss_dssp HHHHHHHCTTCEEEEEE-----SSCHH----HHHHHGGGEEE-EEEEEEC
T ss_pred HHHHHHhhcCCCceeEE-----ecCch----hhhhhhhhccC-CCeEEee
Confidence 1 112356999876 34432 68899999999 9999875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.75 E-value=0.17 Score=40.43 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=59.4
Q ss_pred HHHhcCCCCCCeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC--
Q 019282 173 LAEASHITPNSHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK-- 248 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~-- 248 (343)
+.+..+++++.+||=.| .|.|.++..+++.... .++.++.+.......++. |. ...+.....++.+
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~~~~~~l~~~---Ga----~~vi~~~~~~~~~~v 86 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSDAKREMLSRL---GV----EYVGDSRSVDFADEI 86 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHTT---CC----SEEEETTCSTHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc---cceeeecccccccccccc---cc----cccccCCccCHHHHH
Confidence 44556789999999977 3467777777776543 343333333334444432 21 1223222333321
Q ss_pred --CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 --FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 --~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+..- +.+ .++.+.++|+| +|+++..
T Consensus 87 ~~~t~~~g~d~v~d~~-----g~~----~~~~~~~~l~~-~G~~v~~ 123 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSL-----AGE----AIQRGVQILAP-GGRFIEL 123 (183)
T ss_dssp HHHTTTCCEEEEEECC-----CTH----HHHHHHHTEEE-EEEEEEC
T ss_pred HHHhCCCCEEEEEecc-----cch----HHHHHHHHhcC-CCEEEEE
Confidence 11245799998743 222 57888999999 9999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.52 E-value=0.43 Score=37.79 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcCCcC-HHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC---CCCCCC
Q 019282 178 HITPNSHVLEIGCGTL-RVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT---KFGSGV 253 (343)
Q Consensus 178 ~l~~~~rVLDIGCGtG-~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~---~~~~~~ 253 (343)
.++|+..||=+|+|.. ..+..+++......+.+++.+... ...+++.. . ...+.....+.. +.....
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k--~~~~~~~g---a----~~~i~~~~~~~~~~~~~~~~~ 99 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEK--LKLAERLG---A----DHVVDARRDPVKQVMELTRGR 99 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHH--HHHHHHTT---C----SEEEETTSCHHHHHHHHTTTC
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHH--HHHHhhcc---c----ceeecCcccHHHHHHHhhCCC
Confidence 5788999999999854 444566666665655666665543 33334321 1 112222111111 011234
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+|+|+-. .+... .++...+.++| ||++++.
T Consensus 100 g~d~vid~-----~g~~~---~~~~a~~~l~~-~G~iv~~ 130 (172)
T d1h2ba2 100 GVNVAMDF-----VGSQA---TVDYTPYLLGR-MGRLIIV 130 (172)
T ss_dssp CEEEEEES-----SCCHH---HHHHGGGGEEE-EEEEEEC
T ss_pred CceEEEEe-----cCcch---HHHHHHHHHhC-CCEEEEE
Confidence 68988763 33322 58889999999 9999875
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.34 E-value=0.6 Score=41.90 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.7
Q ss_pred cCCCCCCeEEEEcCCcCHHHHHHHHHcC
Q 019282 177 SHITPNSHVLEIGCGTLRVGVHFIRYLN 204 (343)
Q Consensus 177 ~~l~~~~rVLDIGCGtG~~a~~la~~~~ 204 (343)
.+.++..+|+|+|+|+|.++..+++.+.
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~ 102 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALR 102 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHT
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhc
Confidence 4555567899999999999998887653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.08 E-value=0.28 Score=39.04 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred HHHHHhcCCCCCCeEEEEcCC--cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 171 EFLAEASHITPNSHVLEIGCG--TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCG--tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
..+.+...++++.+||=.|+| .|.++..+++..+ . .++.++.+....+..++. |. . ..+.....++.+
T Consensus 18 ~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-a--~Vi~~~~s~~k~~~~~~l---Ga---~-~vi~~~~~d~~~ 87 (179)
T d1qora2 18 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG-A--KLIGTVGTAQKAQSALKA---GA---W-QVINYREEDLVE 87 (179)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-C--EEEEEESSHHHHHHHHHH---TC---S-EEEETTTSCHHH
T ss_pred HHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhC-C--eEeecccchHHHHHHHhc---CC---e-EEEECCCCCHHH
Confidence 345555678999999999665 6778888888654 3 344444444444444432 21 1 223222333321
Q ss_pred ----CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 ----FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ----~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
......+|+|+... ..+ .+....+.++| +|++++.
T Consensus 88 ~v~~~t~g~g~d~v~d~~-----g~~----~~~~~~~~l~~-~G~~v~~ 126 (179)
T d1qora2 88 RLKEITGGKKVRVVYDSV-----GRD----TWERSLDCLQR-RGLMVSF 126 (179)
T ss_dssp HHHHHTTTCCEEEEEECS-----CGG----GHHHHHHTEEE-EEEEEEC
T ss_pred HHHHHhCCCCeEEEEeCc-----cHH----HHHHHHHHHhc-CCeeeec
Confidence 11245789887643 222 46789999999 9998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.01 E-value=0.97 Score=35.87 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=58.8
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCc--
Q 019282 170 FEFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDF-- 246 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl-- 246 (343)
+..+.+...++++.+||=+|||. |..+..+++......+.++|.+...+..+ +++.. ...+.....|.
T Consensus 16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a--~~lGa-------~~~i~~~~~d~~~ 86 (174)
T d1p0fa2 16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA--IELGA-------TECLNPKDYDKPI 86 (174)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH--HHTTC-------SEEECGGGCSSCH
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH--HHcCC-------cEEEcCCCchhHH
Confidence 33445556899999999999985 44555566666666666777666555444 44321 11221111111
Q ss_pred CC---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TK---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ...++.+|.|+-. ..... .+......+++.+|.+++.
T Consensus 87 ~~~~~~~~~~G~d~vid~-----~g~~~---~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 87 YEVICEKTNGGVDYAVEC-----AGRIE---TMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HHHHHHHTTSCBSEEEEC-----SCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred HHHHHHhcCCCCcEEEEc-----CCCch---HHHHHHHHHHHhcCceEEE
Confidence 00 0023468888753 22222 4556666554405888775
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.91 E-value=0.07 Score=43.46 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred HHHhcCCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcC--C
Q 019282 173 LAEASHITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFT--K 248 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~--~ 248 (343)
+.+....+++.+||=-|. |.|.++.++++... .+++....++...+.+++..... .+..+..... .
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~G---a~Viat~~s~~k~~~~~~lGa~~-------vi~~~~~~~~~~~ 92 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRG---YTVEASTGKAAEHDYLRVLGAKE-------VLAREDVMAERIR 92 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCTTCHHHHHHTTCSE-------EEECC--------
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcC---CceEEecCchHHHHHHHhcccce-------eeecchhHHHHHH
Confidence 444556777889999874 67778888887753 33444444333444444432211 1111111100 0
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+.+|+|+-. +... .+.+..++|+| ||++++.
T Consensus 93 ~~~~~gvD~vid~-----vgg~----~~~~~l~~l~~-~Griv~~ 127 (176)
T d1xa0a2 93 PLDKQRWAAAVDP-----VGGR----TLATVLSRMRY-GGAVAVS 127 (176)
T ss_dssp -CCSCCEEEEEEC-----STTT----THHHHHHTEEE-EEEEEEC
T ss_pred HhhccCcCEEEEc-----CCch----hHHHHHHHhCC-CceEEEe
Confidence 1134679988763 3333 57889999999 9999876
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=90.75 E-value=1.4 Score=38.25 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=65.2
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCC-cEEEecccCCcCC-CC--------CC
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKR-PIIVRGEDMDFTK-FG--------SG 252 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~-~~~~~~~~~dl~~-~~--------~~ 252 (343)
..|+.+|||-=.-...+ -...++.++++|.......+.+.+.+.+..... ...+. .|+.+ +. ..
T Consensus 91 ~qvV~LGaGlDTr~~Rl---~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~---~Dl~~~~~~~L~~~g~d~ 164 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL---DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVP---IDLRQDWPPALRSAGFDP 164 (297)
T ss_dssp CEEEEETCTTCCHHHHS---CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEE---CCTTSCHHHHHHHTTCCT
T ss_pred CeEEEeCcccCChhhhc---CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEec---ccccchHHHHHHhcCCCC
Confidence 46777999975544333 124677899999766555444433333333222 22222 23321 10 11
Q ss_pred CceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 253 VVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 253 ~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
+.-=++++-.++.+++......+|+.+.+...| |+.+++.
T Consensus 165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~-GS~l~~d 204 (297)
T d2uyoa1 165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV-GSRIAVE 204 (297)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT-TCEEEEE
T ss_pred CCCEEEEEccccccCCHHHHHHHHHHHHHhCCC-CCEEEEE
Confidence 334567777889999999999999999999999 9998876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.25 Score=39.10 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 170 FEFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+..+. ..+++++.+||=+|||. |.++..+++... ....+++.+... .+.++++. . . ..+.....+..
T Consensus 20 y~al~-~~~~~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~--~~~a~~lG---a---d-~~i~~~~~~~~- 87 (168)
T d1uufa2 20 YSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAK--REAAKALG---A---D-EVVNSRNADEM- 87 (168)
T ss_dssp HHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGG--HHHHHHHT---C---S-EEEETTCHHHH-
T ss_pred HHHHH-HhCCCCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhH--HHHHhccC---C---c-EEEECchhhHH-
Confidence 44443 47899999999999974 666677777654 233455544433 33344322 1 1 12221111111
Q ss_pred CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
....+.+|.|+-.- +... .++...+.++| ||++++.
T Consensus 88 ~~~~~~~D~vid~~-----g~~~---~~~~~~~~l~~-~G~iv~~ 123 (168)
T d1uufa2 88 AAHLKSFDFILNTV-----AAPH---NLDDFTTLLKR-DGTMTLV 123 (168)
T ss_dssp HTTTTCEEEEEECC-----SSCC---CHHHHHTTEEE-EEEEEEC
T ss_pred HHhcCCCceeeeee-----ecch---hHHHHHHHHhc-CCEEEEe
Confidence 11235799887642 2221 46778899999 9999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.99 E-value=0.32 Score=38.08 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=52.7
Q ss_pred hcCCCCCCeEEEEcCCcCHH-HHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC-C--C
Q 019282 176 ASHITPNSHVLEIGCGTLRV-GVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF-G--S 251 (343)
Q Consensus 176 ~~~l~~~~rVLDIGCGtG~~-a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~-~--~ 251 (343)
..+++|+.+||=+|||.-.. +..+++.. +..++.++.+......+++.. . ...+.....++... . .
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~---g~~v~~~~~~~~r~~~~k~~G---a----~~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM---GLNVVAVDIGDEKLELAKELG---A----DLVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHTT---C----SEEECTTTSCHHHHHHHHH
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcC---CCeEeccCCCHHHhhhhhhcC---c----ceecccccchhhhhccccc
Confidence 35789999999999986443 34444443 234555555555555555432 1 11221111121100 0 1
Q ss_pred CCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 252 GVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 252 ~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+.+|.|++. ... ..++...+.|+| ||++++.
T Consensus 92 ~~~~~~v~~~-----~~~----~~~~~a~~~l~~-~G~i~~~ 123 (168)
T d1rjwa2 92 GGVHAAVVTA-----VSK----PAFQSAYNSIRR-GGACVLV 123 (168)
T ss_dssp SSEEEEEESS-----CCH----HHHHHHHHHEEE-EEEEEEC
T ss_pred CCCceEEeec-----CCH----HHHHHHHHHhcc-CCceEec
Confidence 2344444332 221 268899999999 9999875
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.41 E-value=1.5 Score=34.23 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=60.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCC-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEeccc--CCc
Q 019282 170 FEFLAEASHITPNSHVLEIGCG-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGED--MDF 246 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCG-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~--~dl 246 (343)
+..+.+..+++|+.+||=+||| .|.++..+++......+.+++.++... +.++++... ..+.... .+.
T Consensus 17 y~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~--~~ak~lGa~-------~~i~~~~~~~~~ 87 (176)
T d2fzwa2 17 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF--ARAKEFGAT-------ECINPQDFSKPI 87 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH--HHHHHHTCS-------EEECGGGCSSCH
T ss_pred HHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH--HHHHHhCCc-------EEEeCCchhhHH
Confidence 4445555789999999999887 455556667766655555665555443 333443211 1111100 011
Q ss_pred CC---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 247 TK---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 247 ~~---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. ....+.+|+|+-. ++... .++....++++ ||.+++.
T Consensus 88 ~~~~~~~~~~g~D~vid~-----~G~~~---~~~~~~~~~~~-g~~~~~v 128 (176)
T d2fzwa2 88 QEVLIEMTDGGVDYSFEC-----IGNVK---VMRAALEACHK-GWGVSVV 128 (176)
T ss_dssp HHHHHHHTTSCBSEEEEC-----SCCHH---HHHHHHHTBCT-TTCEEEE
T ss_pred HHHHHHHcCCCCcEeeec-----CCCHH---HHHHHHHhhcC-CceeEEE
Confidence 00 0023568988764 33332 67889999999 8877654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=86.43 E-value=1.2 Score=34.54 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=52.0
Q ss_pred CeEEEEcCCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCceeEEEEcc
Q 019282 183 SHVLEIGCGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVYDLIYASA 262 (343)
Q Consensus 183 ~rVLDIGCGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~fDlIvs~~ 262 (343)
++|.=||+| .++..+++.+...++.+++.|.+....+.+++. +..+ ... .+.. .-...|+|+.
T Consensus 1 MkI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~---~~~~---~~~----~~~~---~~~~~DiIil-- 63 (165)
T d2f1ka2 1 MKIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER---QLVD---EAG----QDLS---LLQTAKIIFL-- 63 (165)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT---TSCS---EEE----SCGG---GGTTCSEEEE--
T ss_pred CEEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh---hccc---eee----eecc---cccccccccc--
Confidence 356778775 455555555544677777777766555444331 2211 111 1122 1246788875
Q ss_pred ccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 263 VFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 263 v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+|......+++++...++| + .+++.
T Consensus 64 ---avp~~~~~~vl~~l~~~l~~-~-~iv~~ 89 (165)
T d2f1ka2 64 ---CTPIQLILPTLEKLIPHLSP-T-AIVTD 89 (165)
T ss_dssp ---CSCHHHHHHHHHHHGGGSCT-T-CEEEE
T ss_pred ---cCcHhhhhhhhhhhhhhccc-c-cceee
Confidence 45666777799999999998 4 45443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.29 E-value=2.6 Score=33.23 Aligned_cols=55 Identities=7% Similarity=0.069 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCc-CHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhc
Q 019282 170 FEFLAEASHITPNSHVLEIGCGT-LRVGVHFIRYLNPENFHCLERDELSLMAAFRYEL 226 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGt-G~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~ 226 (343)
+..+.+..+++++..||=+|||. |..+..+++......+.++|.+...+. .++++
T Consensus 18 ~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~--~Ak~~ 73 (176)
T d1d1ta2 18 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE--KAMAV 73 (176)
T ss_dssp HHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH--HHHHH
T ss_pred HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH--HHHhc
Confidence 33455556799999999999984 445555566655555566666555444 44543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.36 E-value=2.4 Score=33.73 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=59.3
Q ss_pred HHHhcCCCCC--CeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCC
Q 019282 173 LAEASHITPN--SHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTK 248 (343)
Q Consensus 173 l~~~~~l~~~--~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~ 248 (343)
+.+..+++++ ..||=.| .|.|.++.++++......+.++.... ......++.. +. ...++....++.+
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~-e~~~~l~~~~---ga----d~vi~~~~~~~~~ 91 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ-EKCLFLTSEL---GF----DAAVNYKTGNVAE 91 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH-HHHHHHHHHS---CC----SEEEETTSSCHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH-HHHhhhhhcc---cc----eEEeeccchhHHH
Confidence 4455677776 6799877 57899999999987654333333332 2222222222 11 1223222222211
Q ss_pred CC---CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 249 FG---SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 249 ~~---~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.. .+..+|+|+- .+..+ .++...++|+| ||+++..
T Consensus 92 ~~~~~~~~GvDvv~D-----~vGg~----~~~~~~~~l~~-~G~iv~~ 129 (187)
T d1vj1a2 92 QLREACPGGVDVYFD-----NVGGD----ISNTVISQMNE-NSHIILC 129 (187)
T ss_dssp HHHHHCTTCEEEEEE-----SSCHH----HHHHHHTTEEE-EEEEEEC
T ss_pred HHHHHhccCceEEEe-----cCCch----hHHHHhhhccc-cccEEEe
Confidence 00 1346999974 33332 68899999999 9999864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=85.19 E-value=0.35 Score=38.46 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=53.8
Q ss_pred hcCCCCCCeEEEEcC-C-cCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCC
Q 019282 176 ASHITPNSHVLEIGC-G-TLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGV 253 (343)
Q Consensus 176 ~~~l~~~~rVLDIGC-G-tG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~ 253 (343)
..+++++.+||=.|. | .|..+..+++..+ ++++.++.++...+.+++. |. . ..+...+.. .......
T Consensus 22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G---~~vi~~~~~~~~~~~~~~l---Ga---~-~~i~~~~~~-~~~~~~~ 90 (171)
T d1iz0a2 22 RAQARPGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEKLALPLAL---GA---E-EAATYAEVP-ERAKAWG 90 (171)
T ss_dssp HTTCCTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGGSHHHHHT---TC---S-EEEEGGGHH-HHHHHTT
T ss_pred HhCCCCCCEEEEEeccccchhhhhhhhcccc---ccccccccccccccccccc---cc---c-eeeehhhhh-hhhhccc
Confidence 468899999999884 4 4677777777644 3344443333333333332 22 1 112111100 0011235
Q ss_pred ceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 254 VYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 254 ~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+|+|+-. .++ .++...++|+| ||+++..
T Consensus 91 g~D~v~d~-----~G~-----~~~~~~~~l~~-~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEV-----RGK-----EVEESLGLLAH-GGRLVYI 119 (171)
T ss_dssp SEEEEEEC-----SCT-----THHHHHTTEEE-EEEEEEC
T ss_pred cccccccc-----cch-----hHHHHHHHHhc-CCcEEEE
Confidence 69998763 222 35778899999 9998764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.16 E-value=1.5 Score=35.05 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCCCeEEEEcCC---cCHHHHHHHHHcCCCceEEEEc----ChhHHHHHHHHhcccCCCCCCCcEEEeccc
Q 019282 171 EFLAEASHITPNSHVLEIGCG---TLRVGVHFIRYLNPENFHCLER----DELSLMAAFRYELPSQGLLHKRPIIVRGED 243 (343)
Q Consensus 171 ~~l~~~~~l~~~~rVLDIGCG---tG~~a~~la~~~~~~~~~vvdi----d~s~~~~a~a~~~~~~~~~~~~~~~~~~~~ 243 (343)
..+.+...++++.+||=+.+| .|..+..+++... +.++.+ +......+..++. |. .. .+..+.
T Consensus 18 ~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~G---a~vI~~v~~~~~~~~~~~~~~~l---Ga---d~-vi~~~~ 87 (189)
T d1gu7a2 18 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN---FNSISVIRDRPNLDEVVASLKEL---GA---TQ-VITEDQ 87 (189)
T ss_dssp HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT---CEEEEEECCCTTHHHHHHHHHHH---TC---SE-EEEHHH
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcC---CeEEEEEecccccchHHhhhhhc---cc---cE-EEeccc
Confidence 335455678999888888433 4566777777654 334433 2222222222221 22 11 121111
Q ss_pred CCcCCCC---------CCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 244 MDFTKFG---------SGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 244 ~dl~~~~---------~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
.+..++. ..+.+|+|+- .+..+ .+....++|+| +|+++..
T Consensus 88 ~~~~~~~~~v~~~~~~~g~~vdvv~D-----~vg~~----~~~~~~~~l~~-~G~~v~~ 136 (189)
T d1gu7a2 88 NNSREFGPTIKEWIKQSGGEAKLALN-----CVGGK----SSTGIARKLNN-NGLMLTY 136 (189)
T ss_dssp HHCGGGHHHHHHHHHHHTCCEEEEEE-----SSCHH----HHHHHHHTSCT-TCEEEEC
T ss_pred cchhHHHHHHHHHHhhccCCceEEEE-----CCCcc----hhhhhhhhhcC-CcEEEEE
Confidence 1111110 1345888874 34433 56788899999 9999764
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=83.85 E-value=0.96 Score=36.23 Aligned_cols=96 Identities=10% Similarity=0.153 Sum_probs=52.6
Q ss_pred CCCCCCeEEEEcC--CcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCCCCCCce
Q 019282 178 HITPNSHVLEIGC--GTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKFGSGVVY 255 (343)
Q Consensus 178 ~l~~~~rVLDIGC--GtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~f 255 (343)
..+++.+||=.|. |.|..+.++++.+ +++++.+..+....+..++.... ..+.-++.+.........+
T Consensus 28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~---Ga~Via~~~~~~k~~~~~~lGad-------~vi~~~~~~~~~~l~~~~~ 97 (177)
T d1o89a2 28 VRPQDGEIVVTGASGGVGSTAVALLHKL---GYQVVAVSGRESTHEYLKSLGAS-------RVLPRDEFAESRPLEKQVW 97 (177)
T ss_dssp CCGGGCEEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTEE-------EEEEGGGSSSCCSSCCCCE
T ss_pred CCCCCCcEEEEEccccchHHHHHHHHHc---CCCeEEEecchhHHHHHHhhccc-------cccccccHHHHHHHHhhcC
Confidence 3444557886553 4666777777764 34455544444444444432211 1222222233222234567
Q ss_pred eEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 256 DLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 256 DlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
|.|+- .+..+ .+.+..+.|++ +|+++..
T Consensus 98 ~~vvD-----~Vgg~----~~~~~l~~l~~-~Griv~~ 125 (177)
T d1o89a2 98 AGAID-----TVGDK----VLAKVLAQMNY-GGCVAAC 125 (177)
T ss_dssp EEEEE-----SSCHH----HHHHHHHTEEE-EEEEEEC
T ss_pred CeeEE-----EcchH----HHHHHHHHhcc-ccceEee
Confidence 88742 34433 68999999999 9999876
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.85 E-value=0.46 Score=37.88 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHhcCCCCCCeEEEEc--CCcCHHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEecccCCcCCC-
Q 019282 173 LAEASHITPNSHVLEIG--CGTLRVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRGEDMDFTKF- 249 (343)
Q Consensus 173 l~~~~~l~~~~rVLDIG--CGtG~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~dl~~~- 249 (343)
|.+.-..+++..||=-| .|-|.++.++++.+.. +++.+..+....+..++. +. .. .+..++......
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga---~Viat~~s~~k~~~~~~l---Ga---d~-vi~~~~~~~~~~~ 84 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY---DVVASTGNREAADYLKQL---GA---SE-VISREDVYDGTLK 84 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC---CEEEEESSSSTHHHHHHH---TC---SE-EEEHHHHCSSCCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC---ceEEEecCHHHHHHHHhh---cc---cc-eEeccchhchhhh
Confidence 44333455666788766 3577788888887653 344444433333333332 21 11 122111111111
Q ss_pred -CCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCcEEEEE
Q 019282 250 -GSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDGRIFVS 293 (343)
Q Consensus 250 -~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG~lvi~ 293 (343)
...+.+|+|+- .+..+ .+.+..++|+| +|++++.
T Consensus 85 ~~~~~gvd~vid-----~vgg~----~~~~~~~~l~~-~G~iv~~ 119 (167)
T d1tt7a2 85 ALSKQQWQGAVD-----PVGGK----QLASLLSKIQY-GGSVAVS 119 (167)
T ss_dssp SSCCCCEEEEEE-----SCCTH----HHHHHHTTEEE-EEEEEEC
T ss_pred cccCCCceEEEe-----cCcHH----HHHHHHHHhcc-CceEEEe
Confidence 12467998865 34443 67899999999 9999875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.51 E-value=3.3 Score=32.25 Aligned_cols=106 Identities=8% Similarity=-0.061 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcC-HHHHHHHHHcCCCceEEEEcChhHHHHHHHHhcccCCCCCCCcEEEec-ccCCc-
Q 019282 170 FEFLAEASHITPNSHVLEIGCGTL-RVGVHFIRYLNPENFHCLERDELSLMAAFRYELPSQGLLHKRPIIVRG-EDMDF- 246 (343)
Q Consensus 170 ~~~l~~~~~l~~~~rVLDIGCGtG-~~a~~la~~~~~~~~~vvdid~s~~~~a~a~~~~~~~~~~~~~~~~~~-~~~dl- 246 (343)
+..+.+...++++..||=+|+|.+ ..+..+++......+.+++.+..... .+++.. . ...+.. +..+.
T Consensus 17 y~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~--~a~~~G---a----~~~i~~~~~~~~~ 87 (176)
T d2jhfa2 17 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA--KAKEVG---A----TECVNPQDYKKPI 87 (176)
T ss_dssp HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH--HHHHTT---C----SEEECGGGCSSCH
T ss_pred HHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH--HHHHhC---C----eeEEecCCchhHH
Confidence 344555578999999999999643 35555566665555566665554443 334432 1 111211 10111
Q ss_pred CC---CCCCCceeEEEEccccccCCchHHHHHHHHHHhccCCCCc-EEEEE
Q 019282 247 TK---FGSGVVYDLIYASAVFLHMPDKLVWVGLERLASKLRPYDG-RIFVS 293 (343)
Q Consensus 247 ~~---~~~~~~fDlIvs~~v~~hl~~~~~~~~L~~l~r~LkP~GG-~lvi~ 293 (343)
.. ....+.+|+|+-.. +... .++.....+++ || .+++.
T Consensus 88 ~~~~~~~~~~G~D~vid~~-----G~~~---~~~~a~~~~~~-~~g~~~~~ 129 (176)
T d2jhfa2 88 QEVLTEMSNGGVDFSFEVI-----GRLD---TMVTALSCCQE-AYGVSVIV 129 (176)
T ss_dssp HHHHHHHTTSCBSEEEECS-----CCHH---HHHHHHHHBCT-TTCEEEEC
T ss_pred HHHHHHHhcCCCCEEEecC-----Cchh---HHHHHHHHHhc-CCcceEEe
Confidence 00 01235689887643 3322 46777778887 64 55443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.50 E-value=0.87 Score=38.23 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=48.7
Q ss_pred EEecccCCc-CCCCCCCceeEEEEccccccC-------C--chHHHHHHHHHHhccCCCCcEEEEEeccccccCCC----
Q 019282 238 IVRGEDMDF-TKFGSGVVYDLIYASAVFLHM-------P--DKLVWVGLERLASKLRPYDGRIFVSHNIKFCSRLG---- 303 (343)
Q Consensus 238 ~~~~~~~dl-~~~~~~~~fDlIvs~~v~~hl-------~--~~~~~~~L~~l~r~LkP~GG~lvi~~~~~~~~~~~---- 303 (343)
++.++..+. ..+ +++++|+|+..--+.-. . .......+.+++|+||| ||.+++.....+.....
T Consensus 7 ~~~~D~le~l~~l-~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~-~G~~~~~~~~~~~~~~~~~~~ 84 (279)
T d1eg2a_ 7 YDVCDCLDTLAKL-PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSP-TGSIAIFGGLQYQGEAGSGDL 84 (279)
T ss_dssp EEECCHHHHHHTS-CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEE-EEEEEEEECSCCCCCTTBCCH
T ss_pred EEechHHHHHhhC-cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCC-CccEEEecCccccccccccch
Confidence 444444443 223 46788998886433100 0 01234578999999999 99999875443322221
Q ss_pred HHHHHHHHHhcCCcEEE
Q 019282 304 GEECTKRLTSLGLEYIG 320 (343)
Q Consensus 304 ~~~l~~~L~~aGf~~v~ 320 (343)
...+...+...||....
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (279)
T d1eg2a_ 85 ISIISHMRQNSKMLLAN 101 (279)
T ss_dssp HHHHHHHHHHCCCEEEE
T ss_pred hhHHHHHHhccCceeee
Confidence 45556677888988654
|