Citrus Sinensis ID: 019306

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccEEEEcccccccccEEEEEEccccccccccccccccHEEEEEEccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEccc
Coil and Loop (DISEMBL)
mtscysrltagsaashsllqspkpspkapvscylrdhhanqrlpttllfrsskrnyyhnnsnyknnNVIYIVASAAaaersdgheaavgdlvdkrksgertvEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAgivtdemlsmpkapFVAVGLLEALAAATGMAAGAilsgasipilSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVasgsnpghslkgaGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCShcclflstwvltyhccis
Flexible Loop (DISEMBL)
MTSCYSRltagsaashsllqspkpsPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYhnnsnyknnnVIYIVASAAAAERSDGHEAAVgdlvdkrksgertvefnvisksndrrvEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Low Complexity Region (SEG)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFrsskrnyyhnnsnyknnnVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVavgllealaaatgmaagaILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Disordered region (IsUnstruct)
*******************************CYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA************************VEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCI*
Disordered Region (DISOPRED)
***********************************************************************************************************SKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG**********GIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Disordered Region (DISEMBL)
****************************PVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAA*********AAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Disordered Region (DISPRO)
*****SRL**GSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASA*****************************N****SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCSHCCLFLSTWVLTYHCCIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q9GSB0	473	Crt homolog 1 OS=Dictyost	yes	no	0.586	0.424	0.288	6e-13
Q55C66	478	Crt homolog 3 OS=Dictyost	no	no	0.524	0.376	0.291	1e-12
Q550A6	484	Crt homolog 2 OS=Dictyost	no	no	0.539	0.382	0.284	3e-12

>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 7/208 (3%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
             + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++  Y  +  
Sbjct: 48  ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             +  E    P   F  +G L+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  LV IG ++T    S  G S  G   FW+   ++S +  A   V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226

Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQDV 319
            F   A      +D++ +  + S +Q +
Sbjct: 227 GFQAVAD-----MDVWYLQYWDSLYQSI 249

May regulate endogenous transporter.
Dictyostelium discoideum (taxid: 44689)

>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
             + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++ Y  Y  
Sbjct: 51  ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             V  E  + P+  FV +GLL+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A   V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229

Query: 292 IF 293
            F
Sbjct: 230 AF 231

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N ISK   +   +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct: 51  NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
            LY       +  +  S P+  FV +G L+A+     +  G   +G    +L+Q+ + + 
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
           +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query: 284 ADTVLKEVIF 293
              V K + F
Sbjct: 227 FSNVYKAIGF 236

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
449444865	459	PREDICTED: crt homolog 2-like [Cucumis s	0.909	0.679	0.610	3e-89
359479254	453	PREDICTED: crt homolog 1-like [Vitis vin	0.629	0.476	0.816	5e-87
224103963	451	predicted protein [Populus trichocarpa]	0.906	0.689	0.609	3e-85
296083866	344	unnamed protein product [Vitis vinifera]	0.603	0.601	0.846	9e-85
356519872	426	PREDICTED: crt homolog 1-like [Glycine m	0.705	0.568	0.717	7e-83
356553645	438	PREDICTED: crt homolog 1-like [Glycine m	0.708	0.554	0.718	1e-80
356577341	428	PREDICTED: crt homolog 1-like [Glycine m	0.720	0.577	0.721	8e-80
357505093	432	hypothetical protein MTR_7g054190 [Medic	0.723	0.574	0.698	2e-78
21553716	447	unknown [Arabidopsis thaliana]	0.880	0.675	0.555	3e-78
18419900	447	CRT (chloroquine-resistance transporter)	0.880	0.675	0.555	3e-78

>gi|449444865|ref|XP_004140194.1| PREDICTED: crt homolog 2-like [Cucumis sativus] gi|449480984|ref|XP_004156047.1| PREDICTED: crt homolog 2-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/331 (61%), Positives = 239/331 (72%), Gaps = 19/331 (5%)

Query: 1   MTSCYSRLTAGSAA---SHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYY 57
           MTS   R +AG+A+      L Q P+  P+  VS Y  D   +      ++ R+ K    
Sbjct: 1   MTSWSHRFSAGTASFGGPFRLRQRPRSLPE--VSIYRNDDLRSGC--GCVILRAPK---- 52

Query: 58  HNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDL----VDKRKSGE--RTVEFNVISKSN 111
           H        +  + ++ +   +R      AVGD     + + KSGE    +    + +S 
Sbjct: 53  HRRLEAVAPSGAWDLSDSGEEDRVKPCSYAVGDQRVEDLAEGKSGEILENIRAEKLRRS- 111

Query: 112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA 171
           DR+VEIV+AAA TV+ GV NRVLYKLALVPLKHYPFFLAQLATFGYV VYFSILYLRYHA
Sbjct: 112 DRKVEIVVAAASTVIFGVANRVLYKLALVPLKHYPFFLAQLATFGYVIVYFSILYLRYHA 171

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
           GIVTDEMLS PKAP++  GLLEAL AATGMAA AILSGASIP+LSQTFLVWQILLS IFL
Sbjct: 172 GIVTDEMLSTPKAPYIVAGLLEALGAATGMAAAAILSGASIPVLSQTFLVWQILLSTIFL 231

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
           GRRY+ +QLFGCF V IGVIITVASGSN G+SLK AGIFWSLLMI+SFL QAADTVLKE+
Sbjct: 232 GRRYKTSQLFGCFFVTIGVIITVASGSNAGNSLKEAGIFWSLLMIISFLFQAADTVLKEI 291

Query: 292 IFLDAAQRLKG-GVDLFVVNSYGSAFQDVMV 321
           IFLDA+++LKG  +DLFVVNS+GSAFQ V +
Sbjct: 292 IFLDASRQLKGRTIDLFVVNSFGSAFQAVFI 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479254|ref|XP_002276436.2| PREDICTED: crt homolog 1-like [Vitis vinifera]

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 182/223 (81%), Positives = 197/223 (88%), Gaps = 7/223 (3%)

Query: 110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRY 169
             DRR+++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY
Sbjct: 105 EGDRRMKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRY 164

Query: 170 HAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSII 229
           +AGIVTDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS I
Sbjct: 165 NAGIVTDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAI 224

Query: 230 FLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLK 289
           FLGRRY+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLK
Sbjct: 225 FLGRRYKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLK 284

Query: 290 EVIFLDAAQRLKGG-VDLFVVNSYGSAFQDVMVHRCSHCCLFL 331
           E IFL AA+RLKGG VDLFVVNSYGSAFQ + +      CL L
Sbjct: 285 ERIFLKAAERLKGGSVDLFVVNSYGSAFQALFI------CLLL 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103963|ref|XP_002313263.1| predicted protein [Populus trichocarpa] gi|222849671|gb|EEE87218.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 214/351 (60%), Positives = 247/351 (70%), Gaps = 40/351 (11%)

Query: 1   MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNN 60
           MTSC+ RLT G        QS + S    +S  L+    NQ+    +L RSS R Y  + 
Sbjct: 1   MTSCFRRLTTGPTPPSGPAQSRQRSTADILSLPLKRISINQQ--PGILLRSS-RQYSRS- 56

Query: 61  SNYKNNNVIYIVASAAAAERSDGHEAA---------VGDLV--DKRKSGERTVEFN---V 106
                    +I+ +    +RS G   A         VGD       +S +RTVE N    
Sbjct: 57  ---------FIIEAVEPGDRSGGGNEAEKAGPCACLVGDQTVGGVVESIDRTVEINGKRT 107

Query: 107 ISKSN-----DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVY 161
           IS S+     DR VE+ +AAAVTV+LGVGNRVLYKLAL+PLKHYPFFLAQLATFGYV VY
Sbjct: 108 ISGSDSRSKEDRAVEVAVAAAVTVVLGVGNRVLYKLALLPLKHYPFFLAQLATFGYVIVY 167

Query: 162 FSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLV 221
           F+IL++R+ AGIVTDEMLSMPKAP++ VGLLEAL AATGMAAGAILSGASIPILSQTFLV
Sbjct: 168 FTILHIRHRAGIVTDEMLSMPKAPYILVGLLEALGAATGMAAGAILSGASIPILSQTFLV 227

Query: 222 WQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLL 281
           WQILLS IFLGRRY+VNQL GCFLV +GVIITVASG + G SL+ AGIFWSLLM+ SF L
Sbjct: 228 WQILLSTIFLGRRYKVNQLLGCFLVAVGVIITVASGPSAG-SLREAGIFWSLLMMFSFFL 286

Query: 282 QAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQDVMVHRCSHCCLFL 331
           QAADTVLKEVIF DAA++LKGG VDLFV+NSYGSAFQ + V      CL L
Sbjct: 287 QAADTVLKEVIFSDAAKQLKGGSVDLFVINSYGSAFQALFV------CLLL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083866|emb|CBI24254.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/208 (84%), Positives = 191/208 (91%), Gaps = 1/208 (0%)

Query: 115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIV 174
           +++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY+AGIV
Sbjct: 1   MKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRYNAGIV 60

Query: 175 TDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRR 234
           TDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS IFLGRR
Sbjct: 61  TDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAIFLGRR 120

Query: 235 YRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFL 294
           Y+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLKE IFL
Sbjct: 121 YKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLKERIFL 180

Query: 295 DAAQRLKGG-VDLFVVNSYGSAFQDVMV 321
            AA+RLKGG VDLFVVNSYGSAFQ + +
Sbjct: 181 KAAERLKGGSVDLFVVNSYGSAFQALFI 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519872|ref|XP_003528593.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 178/248 (71%), Positives = 200/248 (80%), Gaps = 6/248 (2%)

Query: 75  AAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVL 134
             A ERS G +  V      R  G    E     +S +R  E+++AAAVTV++G GNRVL
Sbjct: 52  GGAWERS-GEKKVVAP--RPRSVGRFAAESG--RESGNRLAEVMLAAAVTVVMGAGNRVL 106

Query: 135 YKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA 194
           YKLALVPL++YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGLLEA
Sbjct: 107 YKLALVPLRNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGLLEA 166

Query: 195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV 254
           L AATGMAAGA+LSGASIPILSQ FLVWQILLS  FLGRRY+VNQL GC LV IGVI+TV
Sbjct: 167 LGAATGMAAGAMLSGASIPILSQAFLVWQILLSYFFLGRRYKVNQLVGCSLVAIGVILTV 226

Query: 255 ASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYG 313
            SGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA Q+LKGG +D+FVVNS+G
Sbjct: 227 VSGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATQKLKGGSLDMFVVNSFG 286

Query: 314 SAFQDVMV 321
           SAFQ + +
Sbjct: 287 SAFQALFI 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553645|ref|XP_003545164.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/249 (71%), Positives = 205/249 (82%), Gaps = 6/249 (2%)

Query: 78  AERSDGHEAAVGDL---VDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVL 134
           ++   G E  VG     V+ R+  E     + +  S +R VE+  AA  TV+LGVGNRVL
Sbjct: 55  SDDVGGREEKVGPCSYAVEDRRVAEDGGS-DAVVGSRNRVVEVAAAAVATVVLGVGNRVL 113

Query: 135 YKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA 194
           YKLALVPLKHYPFFLAQLATFGYV VYF+ILY+R+HAGIVTDEML  PKAPF+ VGLLEA
Sbjct: 114 YKLALVPLKHYPFFLAQLATFGYVIVYFAILYIRHHAGIVTDEMLDAPKAPFIVVGLLEA 173

Query: 195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV 254
           LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRY+VNQL GCFLV IGV++TV
Sbjct: 174 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNQLLGCFLVTIGVVVTV 233

Query: 255 ASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG--VDLFVVNSY 312
           ASG+  G+ LK  G+FWSLLMIVSF LQAADTVLKE+IFLD++++LKGG  +DLFVVNSY
Sbjct: 234 ASGAGAGNLLKEGGMFWSLLMIVSFFLQAADTVLKEIIFLDSSRKLKGGCCMDLFVVNSY 293

Query: 313 GSAFQDVMV 321
           GSAFQ + V
Sbjct: 294 GSAFQALFV 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577341|ref|XP_003556785.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 204/251 (81%), Gaps = 4/251 (1%)

Query: 72  VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
           V    A +RS   +AAV      R      +      +S +R  E+V+AAAVTV++G GN
Sbjct: 49  VKCGGAWKRSGEKKAAVAA---PRPCAVGRLAAESGRESGNRSAEVVLAAAVTVVMGAGN 105

Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL 191
           RVLYKLALVPLK+YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGL
Sbjct: 106 RVLYKLALVPLKNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGL 165

Query: 192 LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVI 251
           LEAL AATGMAAGA+LSGASIPILSQ FLVWQILLS IFLGRRY+VNQL GCFLV IGVI
Sbjct: 166 LEALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYIFLGRRYKVNQLVGCFLVAIGVI 225

Query: 252 ITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVN 310
           +TVASGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA ++LKGG +D+FVVN
Sbjct: 226 LTVASGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLDMFVVN 285

Query: 311 SYGSAFQDVMV 321
           S+GSAFQ + +
Sbjct: 286 SFGSAFQALFI 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505093|ref|XP_003622835.1| hypothetical protein MTR_7g054190 [Medicago truncatula] gi|355497850|gb|AES79053.1| hypothetical protein MTR_7g054190 [Medicago truncatula]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 181/259 (69%), Positives = 207/259 (79%), Gaps = 11/259 (4%)

Query: 64  KNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAV 123
           +    I +V ++ A ERSD  E       D++K   R VE N   KS ++ V++V+AAA 
Sbjct: 49  RRRTWIPVVEASGARERSDVSEE------DEKK---RIVEDNC-RKSENQTVKVVVAAAA 98

Query: 124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK 183
             + GVGNRVLYKLALVPLK YPFFLAQ +TF YV VYFSILY+RY AGIVTDEML++PK
Sbjct: 99  VGVFGVGNRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPK 158

Query: 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGC 243
            PF+ VGLLEAL AATGMAAGA+LSGASIPILSQTFLVWQILLS IFLGRRY+VNQL GC
Sbjct: 159 TPFLIVGLLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGC 218

Query: 244 FLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG 303
           FLV IGVIITVASGS  G SL+ AGIFWSLLM+VSFL QAADTVLKEVIF DA Q+LKGG
Sbjct: 219 FLVAIGVIITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLKGG 278

Query: 304 -VDLFVVNSYGSAFQDVMV 321
            +DLFVVNS+GSAFQ + +
Sbjct: 279 SLDLFVVNSFGSAFQALFI 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553716|gb|AAM62809.1| unknown [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 181/326 (55%), Positives = 220/326 (67%), Gaps = 24/326 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLKGG-VDLFVVNSYGSAFQDVMV 321
            +RLKG  +DLFVVNSYGS FQ + +
Sbjct: 285 KKRLKGASLDLFVVNSYGSIFQVICI 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419900|ref|NP_568373.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana] gi|115646756|gb|ABJ17107.1| At5g19380 [Arabidopsis thaliana] gi|332005310|gb|AED92693.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 181/326 (55%), Positives = 220/326 (67%), Gaps = 24/326 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLKGG-VDLFVVNSYGSAFQDVMV 321
            +RLKG  +DLFVVNSYGS FQ + +
Sbjct: 285 KKRLKGASLDLFVVNSYGSIFQVICI 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2150250	507	CLT1 "CRT (chloroquine-resista	0.481	0.325	0.638	3.3e-69
TAIR|locus:2177008	452	CLT3 "CRT (chloroquine-resista	0.906	0.688	0.487	2.7e-68
TAIR|locus:2136032	431	CLT2 "CRT (chloroquine-resista	0.641	0.510	0.471	1.3e-50
DICTYBASE|DDB_G0276943	473	crtp1 "chloroquine resistance	0.600	0.435	0.263	3.5e-11
DICTYBASE|DDB_G0270204	478	crtp3 "chloroquine resistance	0.542	0.389	0.264	2.3e-10
DICTYBASE|DDB_G0277321	484	crtp2 "chloroquine resistance	0.539	0.382	0.263	3.2e-10

TAIR|locus:2150250 CLT1 "CRT (chloroquine-resistance transporter)-like transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 106/166 (63%), Positives = 120/166 (72%)

Query:   157 YVAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILS 216
             YVAVYFSILY RY AGIVT EMLS+PK PF+                   LSG S  +LS
Sbjct:   205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query:   217 QTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI 276
             QTFLVWQIL SIIFLGRRYR+NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+
Sbjct:   265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query:   277 VSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQDVMV 321
              SFLLQ ADTV+KEVIFLD+ +RLKG  +DLFVVNSYGS FQ + +
Sbjct:   325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICI 370

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2177008 CLT3 "CRT (chloroquine-resistance transporter)-like transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 157/322 (48%), Positives = 199/322 (61%)

Query:     1 MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFXXXXXXXXXXX 60
             M +   R T G  AS + ++S   +    +S  +R +H + RLP  L+            
Sbjct:     1 MATTSRRFTTGLFASITSVKSHSANRPQSISL-IRRNHIDHRLP--LIVPSSRRWIIQAA 57

Query:    61 XXXXXXXVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIA 120
                      +   + A  ++   +  A+GD  +   S   TV  +VI   + +  EIVI 
Sbjct:    58 RSWDG----FDDGAEAEIKKPGAYGYAIGDN-EIEGSSSSTV--HVIDGEHVKTAEIVIW 110

Query:   121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLS 180
             AAVT   GVGNRV+YKLALVPLK YPFFLAQL+TFGYVAVY++ILY RY AG VTD MLS
Sbjct:   111 AAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLS 170

Query:   181 MPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL 240
             +PK+PF+                   LSG S  +LSQTFLVWQI  SIIFLGRRY VNQ+
Sbjct:   171 VPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQI 230

Query:   241 FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRL 300
              GC LV +GVI++VASGS   HSL  AG+ W LLM++SFLLQ A TVLKEVIF+D+ +RL
Sbjct:   231 LGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRL 290

Query:   301 KGG-VDLFVVNSYGSAFQDVMV 321
             KG  +DLF+VNSYGSAFQ + +
Sbjct:   291 KGASLDLFIVNSYGSAFQAICI 312

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2136032 CLT2 "CRT (chloroquine-resistance transporter)-like transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 106/225 (47%), Positives = 144/225 (64%)

Query:    98 GERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGY 157
             G  T E ++ S  N     IV  + V V L V NRVLYKLALVP+K YPFF+AQL TFGY
Sbjct:    79 GASTEESSIPSNRN----LIVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGY 134

Query:   158 VAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQ 217
             V +YF+ILY R   GIVT+EM+ +PK  F                   +L G  IPIL+Q
Sbjct:   135 VLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQ 194

Query:   218 TFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIV 277
             T+LVWQ+L +++ LGRR+ +NQ+ GC LV +GV++ V+SGS    +L G G  W  +++ 
Sbjct:   195 TYLVWQLLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVA 254

Query:   278 SFLLQAADTVLKEVIFLDAAQRLKG-GVDLFVVNSYGSAFQDVMV 321
             S   QA  +++KE +F DAA+RL+G  +D+FVVNS+GS FQ + V
Sbjct:   255 SAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVVNSFGSGFQALFV 299

GO:0009507 "chloroplast" evidence=IDA

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

DICTYBASE|DDB_G0276943 crtp1 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 57/216 (26%), Positives = 94/216 (43%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N +SK     + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++
Sbjct:    43 NSMSKET---ITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAV 99

Query:   165 L-YLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
               Y  +    +  E    P   F                     SG    +L+Q  + + 
Sbjct:   100 TAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFT 159

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             ++ S IFL  RY + QL G  ++ IG ++T    S  G S  G   FW+   ++S +  A
Sbjct:   160 MIASFIFLKERYSLIQLGGALVI-IGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGA 218

Query:   284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDV 319
                V K++ F   A      +D++ +  + S +Q +
Sbjct:   219 LSNVYKDIGFQAVAD-----MDVWYLQYWDSLYQSI 249

GO:0012506 "vesicle membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270204 crtp3 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 50/189 (26%), Positives = 90/189 (47%)

Query:   107 ISKSNDRR-VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SI 164
             + KS  +  + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++
Sbjct:    44 LKKSMTKETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAM 103

Query:   165 LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQI 224
              Y  Y    V  E  + P+  FV                    SG    +L+Q  + + +
Sbjct:   104 WYKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTM 163

Query:   225 LLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAA 284
             + S IFL  RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A 
Sbjct:   164 IASFIFLRERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGAL 222

Query:   285 DTVLKEVIF 293
               V K++ F
Sbjct:   223 SNVYKDIAF 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0277321 crtp2 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 50/190 (26%), Positives = 88/190 (46%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N ISK       +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct:    51 NSISKQT---ATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query:   165 -LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
              LY       +  +  S P+  FV                    +G    +L+Q+ + + 
Sbjct:   108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct:   168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query:   284 ADTVLKEVIF 293
                V K + F
Sbjct:   227 FSNVYKAIGF 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      343       307    0.0010  115 3  11 22  0.43    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  202 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.95u 0.12s 22.07t   Elapsed:  00:00:01
  Total cpu time:  21.95u 0.12s 22.07t   Elapsed:  00:00:01
  Start:  Sat May 11 08:59:00 2013   End:  Sat May 11 08:59:01 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022281001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (453 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam08627	130	pfam08627, CRT-like, CRT-like	2e-05

>gnl|CDD|117200 pfam08627, CRT-like, CRT-like

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N +SK     + I+I   + ++ GV N VL K  +    +Y FFL+QL  +GYV ++ + 
Sbjct: 49  NSMSKET---LTILIYVVLYIISGVINSVLLKKVMNKFTNYGFFLSQLTNYGYVPIFGAA 105

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFV 187
             Y  Y    +  E  + P+  FV
Sbjct: 106 MWYKIYFTSDIPKETRNFPQYKFV 129

This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
KOG2766	336	consensus Predicted membrane protein [Function unk	99.9
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.86
PF08627	130	CRT-like: CRT-like; InterPro: IPR013936 This regio	99.77
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.64
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.54
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.13
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.12
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.78
KOG1581	327	consensus UDP-galactose transporter related protei	98.61
PLN00411	358	nodulin MtN21 family protein; Provisional	98.55
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.36
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.32
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.22
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.18
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.16
KOG2765	416	consensus Predicted membrane protein [Function unk	98.05
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.99
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.81
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.79
PRK11689	295	aromatic amino acid exporter; Provisional	97.79
PRK15430	296	putative chloramphenical resistance permease RarD;	97.75
PRK11272	292	putative DMT superfamily transporter inner membran	97.75
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.71
KOG1582	367	consensus UDP-galactose transporter related protei	97.34
COG2510	140	Predicted membrane protein [Function unknown]	97.21
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.15
KOG1580	337	consensus UDP-galactose transporter related protei	97.03
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.97
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.81
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.66
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.55
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.36
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.31
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.9
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	95.78
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.7
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.54
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.91
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.42
PRK10532	293	threonine and homoserine efflux system; Provisiona	93.88
PRK11689	295	aromatic amino acid exporter; Provisional	93.64
PLN00411	358	nodulin MtN21 family protein; Provisional	93.3
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.13
COG0697	292	RhaT Permeases of the drug/metabolite transporter	92.68
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	91.84
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	91.25
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	91.18
PRK15430	296	putative chloramphenical resistance permease RarD;	91.16
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	90.29
PRK11272	292	putative DMT superfamily transporter inner membran	89.92
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	89.65
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	87.56
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	86.86
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	86.03
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	84.64
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	83.78
PF12398	42	DUF3660: Receptor serine/threonine kinase ; InterP	83.77

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=2.7e-29  Score=245.93  Aligned_cols=186  Identities=23%  Similarity=0.210  Sum_probs=158.8

Q ss_pred             hhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHHHHHHHhhcccc
Q 019306          128 GVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAIL  207 (343)
Q Consensus       128 Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~~~L~viA~~yt  207 (343)
                      ..+|.....+..+ -.|.|.|++.+.......+|.+++.+|+..+... ++...|+|+|+++|++|+++|++.++|++||
T Consensus        26 ~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~-~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   26 TGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWL-KVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccch-hhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3444555555555 7799999998777777788999888887665433 3566789999999999999999999999999


Q ss_pred             cccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC--CCCCcchHHHHHHHHHhHHHHHH
Q 019306          208 SGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH--SLKGAGIFWSLLMIVSFLLQAAD  285 (343)
Q Consensus       208 sgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~--s~~~~~vlw~lL~ilS~ip~A~S  285 (343)
                      +.++.|+|+|++|||++++|++|||+||++.|++|+++|++|+++++.+|..+++  ..+++.++||+++++|+++||++
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~  183 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVS  183 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998754432  34688999999999999999999


Q ss_pred             HHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhhh
Q 019306          286 TVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHR  323 (343)
Q Consensus       286 nV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~~  323 (343)
                      ||+||+.++|        .|...+.++.++|++++..+
T Consensus       184 nV~~E~~v~~--------~~~~~~lg~~Glfg~ii~~i  213 (334)
T PF06027_consen  184 NVLEEKLVKK--------APRVEFLGMLGLFGFIISGI  213 (334)
T ss_pred             HHHHHHhccc--------CCHHHHHHHHHHHHHHHHHH
Confidence            9999998765        45566789999999998754

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.90  E-value=3.9e-26  Score=215.84  Aligned_cols=184  Identities=19%  Similarity=0.175  Sum_probs=157.1

Q ss_pred             HHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHHHHHHHhh
Q 019306          124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAA  203 (343)
Q Consensus       124 ~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~~~L~viA  203 (343)
                      +=++.++|....-.+..+--|-|-+++.+......++|.+++.+|..       ..+..|++|+++|+.|+++|++++.|
T Consensus        26 LSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-------~~~~~~~hYilla~~DVEaNy~vV~A   98 (336)
T KOG2766|consen   26 LSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-------YIKAKWRHYILLAFVDVEANYFVVKA   98 (336)
T ss_pred             HHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-------HHHHHHHHhhheeEEeecccEEEeee
Confidence            33445666666666667778999888887777777899999988852       23344678999999999999999999


Q ss_pred             cccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC-CCCCcchHHHHHHHHHhHHH
Q 019306          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGAGIFWSLLMIVSFLLQ  282 (343)
Q Consensus       204 ~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~-s~~~~~vlw~lL~ilS~ip~  282 (343)
                      ++||+.++.++|++|.||+.+++||+|||.||++.|+.|+++|++|+++++.||-.+|+ +.++|+++||.++++|+.++
T Consensus        99 yQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlY  178 (336)
T KOG2766|consen   99 YQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLY  178 (336)
T ss_pred             hhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceee
Confidence            99999999999999999999999999999999999999999999999999999866544 35789999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhh
Q 019306          283 AADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVH  322 (343)
Q Consensus       283 A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~  322 (343)
                      |+|||.||++-|+        .|..++.++.++|.+|++.
T Consensus       179 aVSNv~EEflvkn--------~d~~elm~~lgLfGaIIsa  210 (336)
T KOG2766|consen  179 AVSNVSEEFLVKN--------ADRVELMGFLGLFGAIISA  210 (336)
T ss_pred             eeccccHHHHHhc--------CcHHHHHHHHHHHHHHHHH
Confidence            9999999998654        7777778888888777764

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.86  E-value=7.2e-22  Score=188.98  Aligned_cols=197  Identities=20%  Similarity=0.213  Sum_probs=157.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhC------CCCChhHHHHHHhh---hhhhHhHHHHHHHHHhcCccc-----hhhh--cCC
Q 019306          119 IAAAVTVLLGVGNRVLYKLALV------PLKHYPFFLAQLAT---FGYVAVYFSILYLRYHAGIVT-----DEML--SMP  182 (343)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~------~~~nYp~Fl~q~~t---~~yv~vyf~il~~r~~~~~it-----~eml--~~P  182 (343)
                      ++.+.||+.|+.|+++.|-+.+      |.+++|+.++..+.   |.++.+|+.+-..-.+.|...     ..+.  .+.
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            4678899999999999999876      55788988777555   344444433322212222222     0112  344


Q ss_pred             CcceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCC--
Q 019306          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP--  260 (343)
Q Consensus       183 k~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~--  260 (343)
                      +.-|+.+++||++|+.+++.|+.+|+.+++||++++.|.|+-++|.-||+++.+..||+|.+.+..|+++++.++-..  
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            556888999999999999999999999999999999999999999999999999999999999999999999885322  


Q ss_pred             -CCCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHh
Q 019306          261 -GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMV  321 (343)
Q Consensus       261 -g~s~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv  321 (343)
                       .-.+.++.+.|++++++++++-|+|.|+|||..+++      .+|+....+|++.|.+.+.
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~------nV~pl~avg~eGlfG~v~~  221 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS------NVAPLQAVGWEGLFGLVIL  221 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc------cCCHHHHhhhhhhHHHHHH
Confidence             112347789999999999999999999999976553      5999999999999995444

>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT)

Probab=99.77  E-value=3.7e-19  Score=152.06  Aligned_cols=82  Identities=40%  Similarity=0.725  Sum_probs=77.2

Q ss_pred             cccccCcchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHH-HHhcCccchhhhcCCCcc
Q 019306          107 ISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYL-RYHAGIVTDEMLSMPKAP  185 (343)
Q Consensus       107 ~~~~~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~-r~~~~~it~eml~~Pk~k  185 (343)
                      ..+-.+++++++++++++|+.|++|+|++|+++++|.||+||++|+++++|+++||+++++ +|+.+.||+||++||+||
T Consensus        48 k~s~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y~t~~It~Emr~FPkyK  127 (130)
T PF08627_consen   48 KQSYSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMYFTGDITKEMRAFPKYK  127 (130)
T ss_pred             HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHHHHHHcCCCCHHHHhCcccc
Confidence            4556799999999999999999999999999999999999999999999999999999865 599999999999999999


Q ss_pred             eeh
Q 019306          186 FVA  188 (343)
Q Consensus       186 f~i  188 (343)
                      |++
T Consensus       128 FaI  130 (130)
T PF08627_consen  128 FAI  130 (130)
T ss_pred             ccC
Confidence            985

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.64  E-value=5.2e-16  Score=148.41  Aligned_cols=186  Identities=22%  Similarity=0.262  Sum_probs=140.5

Q ss_pred             HHhhhhhHHHHHHHhC-CCCC-hhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHHHHHHHh
Q 019306          125 VLLGVGNRVLYKLALV-PLKH-YPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMA  202 (343)
Q Consensus       125 Vi~Gv~N~Vl~Kl~~~-~~~n-Yp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~~~L~vi  202 (343)
                      ...-..|-++.+.... +.++ ||.|++.++...+..+.+.......     .++....|.++|++++++|+.+..+...
T Consensus         9 ~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (303)
T PF08449_consen    9 FGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-----FPKSRKIPLKKYAILSFLFFLASVLSNA   83 (303)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence            3333445555544444 4445 8999999887766655443332222     2234556778999999999999999999


Q ss_pred             hcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCC---CCCcchHHHHHHHHHh
Q 019306          203 AGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS---LKGAGIFWSLLMIVSF  279 (343)
Q Consensus       203 A~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s---~~~~~vlw~lL~ilS~  279 (343)
                      |..|+|.+.+++++.+.++++|+++.+++||||+..||++++++++|+++...++...++.   ...+...|.+++++|.
T Consensus        84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl  163 (303)
T PF08449_consen   84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSL  163 (303)
T ss_pred             HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998876433221   2233345999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHh
Q 019306          280 LLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMV  321 (343)
Q Consensus       280 ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv  321 (343)
                      +++|+.+++||+++++|      +.+.+....+.++|..++.
T Consensus       164 ~~~a~~~~~qe~~~~~~------~~~~~~~mfy~n~~~~~~~  199 (303)
T PF08449_consen  164 LLDAFTGVYQEKLFKKY------GKSPWELMFYTNLFSLPFL  199 (303)
T ss_pred             HHHHHHHHHHHHHHHHh------CCcHHHHHHHHHHHHHHHH
Confidence            99999999999999886      3444444455555544444

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.54  E-value=3.3e-15  Score=140.71  Aligned_cols=135  Identities=21%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             cceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCC--
Q 019306          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPG--  261 (343)
Q Consensus       184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g--  261 (343)
                      +++++|+++|++.|.+.+.|+.+++++.+|+++|+-|++|.++++++||||.+..||++.++.++|++++...+..+.  
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999999887643221  


Q ss_pred             --CC------CCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhhhh
Q 019306          262 --HS------LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRC  324 (343)
Q Consensus       262 --~s------~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~~~  324 (343)
                        +.      ...+.+.|.++++++++..|++.||+|+++|+.      +.+++.-|.+-++|.+++.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~------~~s~~~~N~qL~~~gi~~~~~~  162 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS------NVSLWIQNMQLYLFGILFNLLA  162 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHH
Confidence              11      134567889999999999999999999987652      3778877877777777776543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.13  E-value=2.1e-10  Score=112.64  Aligned_cols=175  Identities=14%  Similarity=0.081  Sum_probs=133.5

Q ss_pred             cCcchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhc-CccchhhhcCCCcceehh
Q 019306          111 NDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA-GIVTDEMLSMPKAPFVAV  189 (343)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~-~~it~eml~~Pk~kf~im  189 (343)
                      ...++++.+++++--.+...-.+..|..++. .+||++++.++...=.+........++++ .++.  ......++.+.+
T Consensus        44 ~~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~llp~  120 (350)
T PTZ00343         44 PNFKWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK--SLKLFLKNFLPQ  120 (350)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHHH
Confidence            3578999999988888888889999999887 47999999976633221111111111111 1111  011123467888


Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcch
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~v  269 (343)
                      |++-.......++|..+++.+..+++.....+++++++.+++|+|+++.+++|++++++|+++....+       .+..+
T Consensus       121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~  193 (350)
T PTZ00343        121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTW  193 (350)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHH
Confidence            99988888888899999999999999999999999999999999999999999999999999976421       12247


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHH
Q 019306          270 FWSLLMIVSFLLQAADTVLKEVIFLD  295 (343)
Q Consensus       270 lw~lL~ilS~ip~A~SnV~kE~~F~~  295 (343)
                      .|.++.++|.+..|+.+++-++..++
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~  219 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKN  219 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            79999999999999999999987654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.12  E-value=2.5e-10  Score=108.61  Aligned_cols=190  Identities=11%  Similarity=0.069  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHh---cCccchhhhcCCCcceehhhHH
Q 019306          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYH---AGIVTDEMLSMPKAPFVAVGLL  192 (343)
Q Consensus       116 ~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~---~~~it~eml~~Pk~kf~imGll  192 (343)
                      +...++...-.+....+++.|...+. .++|.+++.++...-.+....  .++..   ..+.++    .++++.+.+|++
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~g~~   74 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLL--SWSSGLPKRLKISS----ALLKLLLPVAIV   74 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHH--HHHhCCCCCCCCCH----HHHHHHHHHHHH
Confidence            44566777778888888999998874 699999888764322111111  11111   111111    123457778999


Q ss_pred             HHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHH
Q 019306          193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (343)
Q Consensus       193 Dal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~  272 (343)
                      -+....+.+.|..|++.+..+++..+..+++++++.+++|+|++..+++|+++.++|+++....    +   .+....|+
T Consensus        75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~----~---~~~~~~G~  147 (302)
T TIGR00817        75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT----E---LSFNWAGF  147 (302)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC----c---ccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999764311    1   13346799


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhhhhc
Q 019306          273 LLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRCS  325 (343)
Q Consensus       273 lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~~~s  325 (343)
                      ++.++|.+..|+.+++.++..++      ++.|...+..|...+-+++.+|++
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~l~p~~  194 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTI------KSLDKTNLYAYISIMSLFLLSPPA  194 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------CCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999988875321      148888888777776666665543

specificities overlap.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.78  E-value=1.7e-08  Score=99.77  Aligned_cols=133  Identities=18%  Similarity=0.142  Sum_probs=113.5

Q ss_pred             cceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec---CCCC
Q 019306          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS---GSNP  260 (343)
Q Consensus       184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s---gs~~  260 (343)
                      .|..+|+++-++.|.+.++|+.|.++..+|+..|.-|..|.+++.++|+||.+..||...++-++|+.++-.+   +.++
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999988743   2222


Q ss_pred             C-CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhh
Q 019306          261 G-HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVH  322 (343)
Q Consensus       261 g-~s~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~  322 (343)
                      . .....|.+.|-...+.+|...+++.||=|++.|+.      +.++|+-|-.-++|..+|.+
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s------~~s~wi~NiqL~~~g~~f~~  229 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS------NVSLWIRNIQLYFFGILFNL  229 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHH
Confidence            1 23468889999999999999999999999986542      37777777666666666653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.61  E-value=2.3e-07  Score=90.55  Aligned_cols=199  Identities=16%  Similarity=0.204  Sum_probs=143.2

Q ss_pred             cCcchHHHHHHHHHHHhhhhhHHH-HHHHhCCC------CChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCC
Q 019306          111 NDRRVEIVIAAAVTVLLGVGNRVL-YKLALVPL------KHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK  183 (343)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~Gv~N~Vl-~Kl~~~~~------~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk  183 (343)
                      .++.+.+.+++.+.-.+=+.=-|+ -|++..+.      .+.|-|+...+..+-+++-...+  +.++..   -+-.-|+
T Consensus         9 ~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l--~~~k~~---~~~~apl   83 (327)
T KOG1581|consen    9 ANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAML--KWWKKE---LSGVAPL   83 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHH--hccccc---CCCCCch
Confidence            345555555544433322222222 24555544      26677888888877666553333  211111   1234578


Q ss_pred             cceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCC-C-CC
Q 019306          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGS-N-PG  261 (343)
Q Consensus       184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs-~-~g  261 (343)
                      |+|...++...++..++.-|+.|++=+.|.+--..-+.-+|++=.++-|+||+..+|+.+++|.+|+.+-...+. + .+
T Consensus        84 ~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~  163 (327)
T KOG1581|consen   84 YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSS  163 (327)
T ss_pred             hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcc
Confidence            999999999999999999999999999999999998888999999999999999999999999999887765432 2 23


Q ss_pred             CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCC----eEEEeeehhhhHHHH
Q 019306          262 HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVD----LFVVNSYGSAFQDVM  320 (343)
Q Consensus       262 ~s~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ld----if~vns~~s~fQ~if  320 (343)
                      ++..+|.+.|.+|+...-.+.++-|..|+++|+++      ++.    ++.+|-|+..+....
T Consensus       164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~------k~s~~~mM~~vNLf~~i~~~~~  220 (327)
T KOG1581|consen  164 KSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY------KVSSLHMMFGVNLFSAILNGTY  220 (327)
T ss_pred             ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC------CccHhHHHHHHHHHHHHHHHHh
Confidence            33347999999999999999999999999999865      344    455555555555544

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.55  E-value=1.7e-07  Score=93.04  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=120.2

Q ss_pred             CcchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhh-hhhhHhHHHHHHHHHhcCccchhhhcCCCcceehh
Q 019306          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLAT-FGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV  189 (343)
Q Consensus       112 ~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~-~~nYp~Fl~q~~t-~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~im  189 (343)
                      +|..+..+.++++=+.-.+..++.|...+. +..++  +.-+-. +..+ +.+++.+.+.+.+..++... -...+++++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~--~~~~R~~iA~l-~Ll~~~~~~~~~~~~~~~~~-~~~~~l~l~   84 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYP--FLGYSYLLASL-LLLPSLFFTNRSRSLPPLSV-SILSKIGLL   84 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHH-HHHHHHHHHHHhcccCcchH-HHHHHHHHH
Confidence            345666777777777777888888988864 23333  221111 1111 11222333322111111000 011356778


Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHH------hccccceeeeehhheeeeeeeEEeecCCCC---
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIF------LGRRYRVNQLFGCFLVGIGVIITVASGSNP---  260 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~if------Lk~RY~~~qi~G~~IVliGliv~v~sgs~~---  260 (343)
                      |++-...+.+.+.|.+||+.....++......|+++++.+|      +|+|.+..|++|.+++++|+.+....+...   
T Consensus        85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~  164 (358)
T PLN00411         85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV  164 (358)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            87776666788999999999999999999999999999999      699999999999999999988765432100   


Q ss_pred             ---------------CCCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 019306          261 ---------------GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (343)
Q Consensus       261 ---------------g~s~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~  296 (343)
                                     +....++.++++++.++|++..|+.+++..+..++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~  215 (358)
T PLN00411        165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY  215 (358)
T ss_pred             ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                           001112236689999999999999999998865543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.36  E-value=4.5e-06  Score=82.15  Aligned_cols=196  Identities=18%  Similarity=0.238  Sum_probs=150.6

Q ss_pred             CcchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhh--hcCCCcceeh
Q 019306          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM--LSMPKAPFVA  188 (343)
Q Consensus       112 ~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~-~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~em--l~~Pk~kf~i  188 (343)
                      ++.....++...-..+.+...+..|..+++ -.+||.+++.++.+.=...+   + .....+..+...  .+.+.+..+-
T Consensus        13 ~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~---~-v~~~l~~~~~~~~~~~~~~~~llp   88 (316)
T KOG1441|consen   13 KKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALAL---L-VIKVLKLVPPSKISSKLPLRTLLP   88 (316)
T ss_pred             chhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHH---H-HHHHhcCCCCCccccccchHHHHH
Confidence            466777777888888899999999999998 56999999987332111111   1 111122222221  3345567888


Q ss_pred             hhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcc
Q 019306          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAG  268 (343)
Q Consensus       189 mGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~  268 (343)
                      +|+.-..+..++..++.|+|.+-.|++--.++|++.++++++.+++|+..-++-.+.++.|+.++-..+       .+-.
T Consensus        89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~fn  161 (316)
T KOG1441|consen   89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSFN  161 (316)
T ss_pred             HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999876632       2345


Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhh
Q 019306          269 IFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVH  322 (343)
Q Consensus       269 vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~  322 (343)
                      ++|-+..++|.+.-|++|++.|+.+++.    +.++|..-+-.+.+-.++++.+
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~----~~~~~~~~ll~y~ap~s~~~Ll  211 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSK----GESLNSMNLLYYTAPISLIFLL  211 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccCchHHHHHhhhHHHHHHh
Confidence            7888999999999999999999987421    1137777777777777776665

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.32  E-value=1.4e-07  Score=78.29  Aligned_cols=98  Identities=20%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCccchhhhcCCCcceehhhHHHH-HHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceee
Q 019306          161 YFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQ  239 (343)
Q Consensus       161 yf~il~~r~~~~~it~eml~~Pk~kf~imGllDa-l~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~q  239 (343)
                      ...+...+.+.++..++.++.|+++....|++.. .+..+.+.|..|+++ ....+.+...+++++++.+++|+|.+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~   90 (113)
T PF13536_consen   12 LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRR   90 (113)
T ss_pred             HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            3344444444444445555544455556688886 899999999999995 77799999999999999999999999999


Q ss_pred             eehhheeeeeeeEEeecCCC
Q 019306          240 LFGCFLVGIGVIITVASGSN  259 (343)
Q Consensus       240 i~G~~IVliGliv~v~sgs~  259 (343)
                      ++|+.++++|++++..++.+
T Consensus        91 ~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   91 WLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHhhhhcc
Confidence            99999999999998887654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.22  E-value=1.8e-06  Score=79.38  Aligned_cols=104  Identities=19%  Similarity=0.079  Sum_probs=88.5

Q ss_pred             cceehhhH-HHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC
Q 019306          184 APFVAVGL-LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (343)
Q Consensus       184 ~kf~imGl-lDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~  262 (343)
                      +++++.|. .-.+...+.+.|..|++.....++.+....++++++.+++|+|.+..|++|+.+.++|+++...++.    
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~----  122 (260)
T TIGR00950        47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN----  122 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc----
Confidence            34566664 5788889999999999999999999999999999999999999999999999999999988764431    


Q ss_pred             CCCCcchHHHHHHHHHhHHHHHHHHHHHHHh
Q 019306          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEVIF  293 (343)
Q Consensus       263 s~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F  293 (343)
                        .+....|+++.++|.+..|+.+++.-+..
T Consensus       123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~  151 (260)
T TIGR00950       123 --LSINPAGLLLGLGSGISFALGTVLYKRLV  151 (260)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence              12446799999999999999999977653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.18  E-value=1.2e-05  Score=73.46  Aligned_cols=166  Identities=22%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceeh-hhHHHHHHH
Q 019306          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVA-VGLLEALAA  197 (343)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~i-mGllDal~~  197 (343)
                      +..+..-+....+....|...+.  +.|.+...+......... .+...+....  .+.....++++.++ -++..+.+.
T Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697          10 LALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALL-LLPLLLLEPR--GLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHH-HHHHHHhhcc--cccccccchHHHHHHHHHHHHHHH
Confidence            33344445566677777777665  455444443222222211 1111111110  00111112233344 457788899


Q ss_pred             HHHHhhcccccccHHHHhccchHHHHHHHHH-HHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHHHHHH
Q 019306          198 ATGMAAGAILSGASIPILSQTFLVWQILLSI-IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (343)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~-ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~lL~i  276 (343)
                      .+.+.+..|++.....++......++.+++. +++|+|.+..++.|.++..+|++++..++......    ...++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~----~~~g~~~~l  160 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL----SLLGLLLAL  160 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH----HHHHHHHHH
Confidence            9999999999999999999999999999996 77799999999999999999999998875432111    578999999


Q ss_pred             HHhHHHHHHHHHHHHHh
Q 019306          277 VSFLLQAADTVLKEVIF  293 (343)
Q Consensus       277 lS~ip~A~SnV~kE~~F  293 (343)
                      ++.+..|+.+++.++..
T Consensus       161 ~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         161 AAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999863

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.16  E-value=1.6e-06  Score=83.98  Aligned_cols=176  Identities=20%  Similarity=0.216  Sum_probs=109.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHHHH
Q 019306          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAA  198 (343)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~~~  198 (343)
                      +..+..|..|++..+.+--.+.+...-..-+-.+.+|.|+...+.+..-+.+.-     ...+|-+.|+++-.+=-..|.
T Consensus         5 ~~ai~~vf~GCcsnvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~-----k~kiplk~Y~i~V~mFF~vnv   79 (330)
T KOG1583|consen    5 AAAISLVFGGCCSNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTV-----KPKIPLKDYAITVAMFFIVNV   79 (330)
T ss_pred             HHHHHHHHHhhhchHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeecccccc-----CCCCchhhhheehheeeeeee
Confidence            344555555555444443333332222223334555777766654443222111     133454445444322222333


Q ss_pred             HHHhhcc-cccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC----C-----CCCcc
Q 019306          199 TGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH----S-----LKGAG  268 (343)
Q Consensus       199 L~viA~~-ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~----s-----~~~~~  268 (343)
                      .-..|.. ..|.++-.+.+......+|+++++++||||+..||..++++.+|+++.-.-.+..+.    +     ..+..
T Consensus        80 ~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~  159 (330)
T KOG1583|consen   80 TNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDF  159 (330)
T ss_pred             eccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccc
Confidence            3333444 578888899999999999999999999999999999999999998887553211110    0     01111


Q ss_pred             ---hHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh
Q 019306          269 ---IFWSLLMIVSFLLQAADTVLKEVIFLDAAQR  299 (343)
Q Consensus       269 ---vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~  299 (343)
                         .+|..+..++.+..|..-.|+|...++|-|.
T Consensus       160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh  193 (330)
T KOG1583|consen  160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH  193 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               4567888899999999999999998887543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.05  E-value=4.9e-06  Score=83.38  Aligned_cols=132  Identities=29%  Similarity=0.258  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC-CCCCc
Q 019306          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGA  267 (343)
Q Consensus       189 mGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~-s~~~~  267 (343)
                      ...+=.++|+....|+.||+..++.+|+-++=-||+.++.+|...|+++.+.+++++.++|++++...++.+.. ..+++
T Consensus       165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~  244 (416)
T KOG2765|consen  165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR  244 (416)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence            45556679999999999999999999999999999999999999999999999999999999999988765432 24567


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHhhhh
Q 019306          268 GIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMVHRC  324 (343)
Q Consensus       268 ~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv~~~  324 (343)
                      ..+|+++-++|++.||+=.|.--+--.+    -.+++|+=.+-|++++|.++..+|.
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~----eg~rvdi~lffGfvGLfnllllwP~  297 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGD----EGERVDIQLFFGFVGLFNLLLLWPP  297 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccc----ccccccHHHHHHHHHHHHHHHHhHH
Confidence            7999999999999999987764432111    1135999999999999999998873

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.99  E-value=1.6e-05  Score=77.11  Aligned_cols=144  Identities=19%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             Ccceehh-hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec----C
Q 019306          183 KAPFVAV-GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS----G  257 (343)
Q Consensus       183 k~kf~im-GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s----g  257 (343)
                      +++++++ |+.-..|-.+++.|+.|.|.+=..+...++-.+|.++++++||.||+.++-+|..+.+.|+++.+=|    |
T Consensus        96 ~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG  175 (346)
T KOG4510|consen   96 KRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG  175 (346)
T ss_pred             cEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC
Confidence            5666665 8889999999999999999999999999999999999999999999999999999999999998877    3


Q ss_pred             CCCC--CC-CCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCC-CCeEEEeeehhhhHHHHhhhhcccccceee
Q 019306          258 SNPG--HS-LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQDVMVHRCSHCCLFLST  333 (343)
Q Consensus       258 s~~g--~s-~~~~~vlw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~-ldif~vns~~s~fQ~ifv~~~s~~~~~l~~  333 (343)
                      +...  ++ ..+....+...-+.|..+.|--.++-.++         || .|.+.-.++-++--.+-.+..   |.-++-
T Consensus       176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i---------Gk~~h~~msvsyf~~i~lV~s~I~---~~~ig~  243 (346)
T KOG4510|consen  176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI---------GKNAHAIMSVSYFSLITLVVSLIG---CASIGA  243 (346)
T ss_pred             CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHh---------hccccEEEEehHHHHHHHHHHHHH---Hhhccc
Confidence            3221  11 11334555677777777666544444432         34 888877776665554444332   566667


Q ss_pred             cccce
Q 019306          334 WVLTY  338 (343)
Q Consensus       334 ~~~~~  338 (343)
                      |-+|.
T Consensus       244 ~~lP~  248 (346)
T KOG4510|consen  244 VQLPH  248 (346)
T ss_pred             eecCc
Confidence            77773

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.97  E-value=2.7e-05  Score=74.39  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             ehhhHHHHHHH-HHHHhhccc-ccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCC
Q 019306          187 VAVGLLEALAA-ATGMAAGAI-LSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSL  264 (343)
Q Consensus       187 ~imGllDal~~-~L~viA~~y-tsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~  264 (343)
                      +..|++-.... .+.+.+..| +|.....++.+...+++++++++++|+|.+..|++|+++.++|+.+...++.++    
T Consensus        62 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~----  137 (299)
T PRK11453         62 LGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG----  137 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC----
Confidence            33455433333 344567777 466677888999999999999999999999999999999999988776442211    


Q ss_pred             CCcchHHHHHHHHHhHHHHHHHHHHHHH
Q 019306          265 KGAGIFWSLLMIVSFLLQAADTVLKEVI  292 (343)
Q Consensus       265 ~~~~vlw~lL~ilS~ip~A~SnV~kE~~  292 (343)
                      .+....++++.+++.+..|+.+++..+.
T Consensus       138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~  165 (299)
T PRK11453        138 QHVAMLGFMLTLAAAFSWACGNIFNKKI  165 (299)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223579999999999999999998875

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.81  E-value=4.8e-05  Score=72.01  Aligned_cols=102  Identities=10%  Similarity=0.008  Sum_probs=82.5

Q ss_pred             cceehh-hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCC
Q 019306          184 APFVAV-GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (343)
Q Consensus       184 ~kf~im-GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~  262 (343)
                      |.+++. |...+....+...|+++++......+.....+++++++++++|+|.+..|++|+.++++|+.+...++.. + 
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~-  140 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q-  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c-
Confidence            344444 5568888899999999999999999999999999999999999999999999999999999876654321 1 


Q ss_pred             CCCCcchHHHHHHHHHhHHHHHHHHHHHH
Q 019306          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEV  291 (343)
Q Consensus       263 s~~~~~vlw~lL~ilS~ip~A~SnV~kE~  291 (343)
                          ....+.++.+++.+.+|+.+++..+
T Consensus       141 ----~~~~g~~~~l~aal~~a~~~i~~k~  165 (281)
T TIGR03340       141 ----HRRKAYAWALAAALGTAIYSLSDKA  165 (281)
T ss_pred             ----cchhHHHHHHHHHHHHHHhhhhccc
Confidence                1234556788899999998886554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.79  E-value=1.7e-05  Score=63.87  Aligned_cols=70  Identities=31%  Similarity=0.394  Sum_probs=63.5

Q ss_pred             cceehhhHH-HHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEE
Q 019306          184 APFVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (343)
Q Consensus       184 ~kf~imGll-Dal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~  253 (343)
                      ...++.|.+ -+.+..+.+.|..+++.+...++.....+++++++++++|+|.+..|++|+.++++|+++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            346667877 4999999999999999999999999999999999999999999999999999999997653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.79  E-value=0.00014  Score=69.49  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHHH-HH
Q 019306          121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAA-AT  199 (343)
Q Consensus       121 ~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~~-~L  199 (343)
                      .++.+++-..|-+..|...+.+.  |+.+..+-...-.++.+++  .+ +.    + .+ ..+|+.++.|.+-.... .+
T Consensus         9 ~l~a~~~Wg~~~~~~k~~~~~~~--P~~~~~~R~~~a~l~l~~~--~~-~~----~-~~-~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          9 GLIAILLWSTMVGLIRGVSESLG--PVGGAAMIYSVSGLLLLLT--VG-FP----R-LR-QFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCC--hHHHHHHHHHHHHHHHHHH--cc-cc----c-cc-cccHHHHHHHhHHHHHHHHH
Confidence            33344445577888998877543  3333333221111111111  11 11    1 01 11345566666543333 33


Q ss_pred             HHhhcc----cccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCC-C-CC--CCCCcchHH
Q 019306          200 GMAAGA----ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN-P-GH--SLKGAGIFW  271 (343)
Q Consensus       200 ~viA~~----ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~-~-g~--s~~~~~vlw  271 (343)
                      .+.|..    +++.....++......++++++++++|+|.+..|++|+++.++|+.+...++.+ + ++  ...+....|
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G  157 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS  157 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence            444544    456666688999999999999999999999999999999999999887765321 1 00  011234569


Q ss_pred             HHHHHHHhHHHHHHHHHHHHH
Q 019306          272 SLLMIVSFLLQAADTVLKEVI  292 (343)
Q Consensus       272 ~lL~ilS~ip~A~SnV~kE~~  292 (343)
                      +++.++|.+..|+.+++-++.
T Consensus       158 ~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689        158 YGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.75  E-value=6.3e-05  Score=71.93  Aligned_cols=92  Identities=17%  Similarity=0.098  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcch
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~v  269 (343)
                      ++.=+.+..+.+.|..++|.....++..+.-.++++++++|+|+|.++.|++|+++.++|+++...++.       +.  
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~--  150 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL--  150 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc--
Confidence            355666788899999999999999999999999999999999999999999999999999988664321       11  


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Q 019306          270 FWSLLMIVSFLLQAADTVLKEVI  292 (343)
Q Consensus       270 lw~lL~ilS~ip~A~SnV~kE~~  292 (343)
                        +++.++|++.+|+.+++.++.
T Consensus       151 --~~~~l~aa~~~a~~~i~~r~~  171 (296)
T PRK15430        151 --PIIALGLAFSFAFYGLVRKKI  171 (296)
T ss_pred             --cHHHHHHHHHHHHHHHHHHhc
Confidence              246788899999999887763

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.75  E-value=0.00015  Score=69.09  Aligned_cols=164  Identities=14%  Similarity=0.152  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHH-
Q 019306          115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLE-  193 (343)
Q Consensus       115 ~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllD-  193 (343)
                      +.+..+.+.+.+.=..|-+..|...+.+.....  ..+-...-.++.+++...+ +.+.-+++    ++.++++.|.+- 
T Consensus         7 ~~~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~--~~~R~~~a~l~ll~~~~~~-~~~~~~~~----~~~~~~~~g~~~~   79 (292)
T PRK11272          7 LPLFGALFALYIIWGSTYLVIRIGVESWPPLMM--AGVRFLIAGILLLAFLLLR-GHPLPTLR----QWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHH--HHHHHHHHHHHHHHHHHHh-CCCCCcHH----HHHHHHHHHHHHH
Confidence            445556666666667799999988875544332  2221111111122222222 11110111    123456677654 


Q ss_pred             HHHHHHHHhhc-ccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHH
Q 019306          194 ALAAATGMAAG-AILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (343)
Q Consensus       194 al~~~L~viA~-~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~  272 (343)
                      +.+..+.+.|. .+++.....++......++++++.+ +|+|.++.|++|+++.++|+.+....+.     . +....|+
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-----~-~~~~~G~  152 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-----L-SGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-----c-ccchHHH
Confidence            45677778888 8898888899999999999999985 6999999999999999999887543211     1 2335799


Q ss_pred             HHHHHHhHHHHHHHHHHHHH
Q 019306          273 LLMIVSFLLQAADTVLKEVI  292 (343)
Q Consensus       273 lL~ilS~ip~A~SnV~kE~~  292 (343)
                      ++.++|.+..|+.+++.++.
T Consensus       153 l~~l~a~~~~a~~~~~~~~~  172 (292)
T PRK11272        153 ILILIASASWAFGSVWSSRL  172 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987763

>TIGR00688 rarD rarD protein

Probab=97.71  E-value=0.0001  Score=68.52  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             eehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCC
Q 019306          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLK  265 (343)
Q Consensus       186 f~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~  265 (343)
                      ..+.|.+=+.+..+.+.|..|++.....++.++.-.|+++++.+++|+|.++.|++|+++.++|+++...++.       
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            4456777778889999999999999999999999999999999999999999999999999999887654311       


Q ss_pred             CcchHHHHHHHHHhHHHHHHHHHHHHH
Q 019306          266 GAGIFWSLLMIVSFLLQAADTVLKEVI  292 (343)
Q Consensus       266 ~~~vlw~lL~ilS~ip~A~SnV~kE~~  292 (343)
                      +.    .++.+++.+.+|+.++..++.
T Consensus       146 ~~----~~~~l~aa~~~a~~~i~~~~~  168 (256)
T TIGR00688       146 SL----PWEALVLAFSFTAYGLIRKAL  168 (256)
T ss_pred             Cc----hHHHHHHHHHHHHHHHHHhhc
Confidence            11    135678899999988887763

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.00042  Score=67.63  Aligned_cols=197  Identities=16%  Similarity=0.214  Sum_probs=138.3

Q ss_pred             CcchHHHHHHHHHHHhhhhhHHHHHHHhC--CCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehh
Q 019306          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV  189 (343)
Q Consensus       112 ~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~--~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~im  189 (343)
                      .+-....++..+....=..|-++.-+..+  .++.|.|+++..+...|.......+      ..+.++.+..|++-|.++
T Consensus        39 pkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~------~~~~~k~r~iP~rtY~~l  112 (367)
T KOG1582|consen   39 PKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIEL------QLIQTKRRVIPWRTYVIL  112 (367)
T ss_pred             chhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEE------EeecccceecchhHhhhh
Confidence            34444556665555555566666666655  4568999999988887765332211      113345677899999999


Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcch
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~v  269 (343)
                      +++-+-..-|..-...|++=+-|.+.-+.-+.=+|+-..++=++||.+.++..+.+..+|++.--..|+...+   .=..
T Consensus       113 a~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP---NF~~  189 (367)
T KOG1582|consen  113 AFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP---NFNL  189 (367)
T ss_pred             HhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC---Ccce
Confidence            9998888888888888999999999999998889999999999999999999999999999887666543322   2234


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhhHHHHh
Q 019306          270 FWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQDVMV  321 (343)
Q Consensus       270 lw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~fQ~ifv  321 (343)
                      .|..++-.+-+..|+--=.||+.|+++    ++.-...++-+++-.+-++|+
T Consensus       190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~----~~ss~EmvfySy~iG~vflf~  237 (367)
T KOG1582|consen  190 IGVMMISGALLADAVIGNVQEKAMKMN----PASSSEMVFYSYGIGFVFLFA  237 (367)
T ss_pred             eeHHHHHHHHHHHHHhhHHHHHHHhhC----CCCcceEEEeeecccHHHHHH
Confidence            555555555666777666799998764    333334444444444444444

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.21  E-value=0.0011  Score=58.15  Aligned_cols=131  Identities=22%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCC-ChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehh-hHHHHHH
Q 019306          119 IAAAVTVLLGVGNRVLYKLALVPLK-HYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV-GLLEALA  196 (343)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~-nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~im-GllDal~  196 (343)
                      ++.++--.+.....++.|+-.+.+- +...+.   -+.+-......+++ .++.-..+.| .+-+.|-|+++ |+.-.++
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~I---RtiVi~~~l~~v~~-~~g~~~~~~~-~~~k~~lflilSGla~gls   80 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTI---RTIVILIFLLIVLL-VTGNWQAGGE-IGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCccHHHHH---HHHHHHHHHHHHHH-hcCceecccc-cCcceehhhhHHHHHHHHH
Confidence            3444455566778899999888543 333333   33221111111121 2222111111 22234667777 5668888


Q ss_pred             HHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEe
Q 019306          197 AATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (343)
Q Consensus       197 ~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v  254 (343)
                      -++-+.|...=..+...-++-..+.++.++|++|||.|.+..+++|+.++++|.+++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            8889999998888888999999999999999999999999999999999999988764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.15  E-value=0.00064  Score=66.34  Aligned_cols=74  Identities=24%  Similarity=0.427  Sum_probs=65.8

Q ss_pred             ceehhh-HHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCC
Q 019306          185 PFVAVG-LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGS  258 (343)
Q Consensus       185 kf~imG-llDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs  258 (343)
                      +..+.| +++++|..+.+.|+.+.|.++.+-|....++++++++.++||+|.+..+++|+.++++|.++.+..+.
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~  125 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAP  125 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCC
Confidence            344555 45889999999999999999999999999999999999999999999999999999999887776543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.0002  Score=68.70  Aligned_cols=171  Identities=16%  Similarity=0.219  Sum_probs=115.3

Q ss_pred             cCcchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhh
Q 019306          111 NDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG  190 (343)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imG  190 (343)
                      ..+.+.  ....++-+-.++|.|+.|....                          +|.     +.|..+.|-|-|+.-+
T Consensus        46 ~~E~FT--falaLVf~qC~~N~vfAkvl~~--------------------------ir~-----~~~~D~t~~~~YaAcs   92 (337)
T KOG1580|consen   46 SIEKFT--FALALVFFQCTANTVFAKVLFL--------------------------IRK-----KTEIDNTPTKMYAACS   92 (337)
T ss_pred             chheeh--HHHHHHHHHHHHHHHHHHhhee--------------------------ecc-----cccccCCcchHHHHHH
Confidence            344444  3344555567889998887644                          121     1223455667777766


Q ss_pred             HHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchH
Q 019306          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIF  270 (343)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vl  270 (343)
                      +--.++-.-..-|.+|+|-+-|.+=...--.=+|++-.+|+||.|++.+|.+++.+++|+++-..-...-++.....-.+
T Consensus        93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~  172 (337)
T KOG1580|consen   93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF  172 (337)
T ss_pred             HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence            66666666677788898888765544444444789999999999999999999999999988776421111122344568


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeeehhhh
Q 019306          271 WSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAF  316 (343)
Q Consensus       271 w~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~ldif~vns~~s~f  316 (343)
                      |-+|.++|-...++..+.||.+=..|+ + .+.--.++.|-|..++
T Consensus       173 GElLL~lSL~mDGlTg~~Qdrira~yq-~-~g~~MM~~~NlwStL~  216 (337)
T KOG1580|consen  173 GELLLILSLAMDGLTGSIQDRIRASYQ-R-TGTSMMFYTNLWSTLY  216 (337)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHhhc-c-CchhhHHHHHHHHHHH
Confidence            899999999999999999999744332 1 1123356667666543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.97  E-value=0.0057  Score=58.43  Aligned_cols=157  Identities=12%  Similarity=0.005  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhhHHHHHH
Q 019306          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALA  196 (343)
Q Consensus       117 v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imGllDal~  196 (343)
                      +..+.++++..+ .|.++.|...+.+....  +..+-...-.++.+.+ ..+.+. ..+++    .+++.++.|++-...
T Consensus        14 ~~~~~la~~~~~-~~~~~~K~~~~~~~~~~--~~~~R~~~a~l~l~~~-~~~~~~-~~~~~----~~~~~~~~g~~~~~~   84 (293)
T PRK10532         14 ILLLLIAMASIQ-SGASLAKSLFPLVGAPG--VTALRLALGTLILIAI-FKPWRL-RFAKE----QRLPLLFYGVSLGGM   84 (293)
T ss_pred             HHHHHHHHHHHH-hhHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHH-HhHHhc-cCCHH----HHHHHHHHHHHHHHH
Confidence            455666666666 56668998887433322  2222111101111111 111111 11111    123455678888888


Q ss_pred             HHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHHHHHH
Q 019306          197 AATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (343)
Q Consensus       197 ~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~lL~i  276 (343)
                      +.+.+.|.+|+|.....++..+...++++++    ++|.+  +..++.+.++|+.+...++.+.    ++....++++.+
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~----~~~~~~G~ll~l  154 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDV----SHVDLTGAALAL  154 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCc----ccCChHHHHHHH
Confidence            8899999999999988888877777777766    35544  4556777788887766443221    123467999999


Q ss_pred             HHhHHHHHHHHHHHHH
Q 019306          277 VSFLLQAADTVLKEVI  292 (343)
Q Consensus       277 lS~ip~A~SnV~kE~~  292 (343)
                      ++.+.+|+.+++-.+.
T Consensus       155 ~aa~~~a~~~v~~r~~  170 (293)
T PRK10532        155 GAGACWAIYILSGQRA  170 (293)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999986664

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.81  E-value=0.012  Score=56.67  Aligned_cols=102  Identities=21%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhcc-chHHHHHHHHHHHhccccceee----eehhheeeeeeeEEeecCCCCCCCC
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQ-TFLVWQILLSIIFLGRRYRVNQ----LFGCFLVGIGVIITVASGSNPGHSL  264 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q-~~IP~tmllS~ifLk~RY~~~q----i~G~~IVliGliv~v~sgs~~g~s~  264 (343)
                      |++-+.+|++.+.|.+++..+....+.+ ....+..+++.+++|+|.+..+    ++|++++++|++++..++.++.+..
T Consensus        66 G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~  145 (290)
T TIGR00776        66 GAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIK  145 (290)
T ss_pred             HHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccc
Confidence            4558999999999999999999988888 6667899999999999999999    9999999999888876642221101


Q ss_pred             -CCcchHHHHHHHHHhHHHHHHHHHHHH
Q 019306          265 -KGAGIFWSLLMIVSFLLQAADTVLKEV  291 (343)
Q Consensus       265 -~~~~vlw~lL~ilS~ip~A~SnV~kE~  291 (343)
                       ..+...+.++-++|.+.+|...+.-+.
T Consensus       146 ~~~~~~~Gi~~~l~sg~~y~~~~~~~~~  173 (290)
T TIGR00776       146 SEFNFKKGILLLLMSTIGYLVYVVVAKA  173 (290)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             033467999999999999999888885

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.66  E-value=0.0056  Score=56.25  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             eehhhHHH-HHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeee
Q 019306          186 FVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV  250 (343)
Q Consensus       186 f~imGllD-al~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGl  250 (343)
                      .+..|.+. ..+..+.+.|..+++......+.....++++++++++++++.+..|++|+.+++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            45567664 678888899999999999999999999999999999999999999999999998886

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.025  Score=55.92  Aligned_cols=190  Identities=18%  Similarity=0.227  Sum_probs=124.9

Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHH--HhhhhhhHhHHHHHHHHHhcCccchhhhcCC-Ccceehh
Q 019306          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQ--LATFGYVAVYFSILYLRYHAGIVTDEMLSMP-KAPFVAV  189 (343)
Q Consensus       113 ~~~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q--~~t~~yv~vyf~il~~r~~~~~it~eml~~P-k~kf~im  189 (343)
                      +..+-++..+.|.+....-++.-|..... .+||.++.-  .|++..+++    ++...+.|-+.-|.++.. -||++.+
T Consensus         9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~-y~f~~~l~l~~~Q~l~s~~~----v~~lk~~~lv~~~~l~~~~~kk~~P~   83 (314)
T KOG1444|consen    9 KQSSPLLSALFYCLSSILMTVVNKIVLSS-YNFPMGLLLMLLQSLASVLV----VLVLKRLGLVNFRPLDLRTAKKWFPV   83 (314)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHH----HHHHHHhceeecCCcChHHHHHHccH
Confidence            33445677888888888888999988763 355544443  444443321    222233344433322222 1566677


Q ss_pred             hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcch
Q 019306          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (343)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~v  269 (343)
                      .++=...-+.+..+.+|.+.++..+++..++..+++.=..|+|+|.+..-+..++..++|-.+...++.    +....+.
T Consensus        84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY  159 (314)
T KOG1444|consen   84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGY  159 (314)
T ss_pred             HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc----eecchhH
Confidence            888888888999999999999999999999999999999999999999988888888877766665532    1222234


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCC-CCeEEEeeehhhhHHHHh
Q 019306          270 FWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQDVMV  321 (343)
Q Consensus       270 lw~lL~ilS~ip~A~SnV~kE~~F~~~~~~LK~~-ldif~vns~~s~fQ~ifv  321 (343)
                      .|.   ++.++..|.-.++-++.       .+.+ ++-+-+..+.+++-....
T Consensus       160 ~w~---~~n~~~~a~~~v~~kk~-------vd~~~l~~~~lv~yNnl~~L~~l  202 (314)
T KOG1444|consen  160 SWA---LANCLTTAAFVVYVKKS-------VDSANLNKFGLVFYNNLLSLPPL  202 (314)
T ss_pred             HHH---HHHHHHHHHHHHHHHHh-------hccccccceeEEeehhHHHHHHH
Confidence            554   44555566666666653       2222 555666665555554444

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.36  E-value=0.0087  Score=50.79  Aligned_cols=68  Identities=26%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             ceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306          185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (343)
Q Consensus       185 kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv  252 (343)
                      .+++.|++=..-|+..+....+|++...++++..--+.+.++|.++++.+.+..|++|..++++|..+
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            35556777888888889999999999999999999999999999999999999999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.31  E-value=0.022  Score=56.43  Aligned_cols=169  Identities=15%  Similarity=0.212  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCC----cceehhhHHH
Q 019306          118 VIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK----APFVAVGLLE  193 (343)
Q Consensus       118 ~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk----~kf~imGllD  193 (343)
                      +.+++++-.+..+=+-.+|-.... .+||-|.+.++..+-.  .|+.+..+-+....++.-..+.|    ++.+.-|++-
T Consensus        18 L~lVl~yY~~Si~Ltf~~~~~~~~-f~fPLf~ts~h~~v~f--lfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat   94 (349)
T KOG1443|consen   18 LALVLLYYFLSIGLTFYFKWLTKN-FHFPLFVTSLHLAVKF--LFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT   94 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC-cCCchHHHHHHHHHHH--HHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh
Confidence            334455656665556666655443 7899999887764322  23444333222223332223333    2344557777


Q ss_pred             HHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHHH
Q 019306          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (343)
Q Consensus       194 al~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~l  273 (343)
                      +.---+...+..|++.+.+.|-.-++|.|.+++|.+|-=.|+++.=.+=++++.+|+++...-.+       +-.+.|-+
T Consensus        95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~  167 (349)
T KOG1443|consen   95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFF  167 (349)
T ss_pred             hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHH
Confidence            77777899999999999999999999999999999998888888777777788888888776422       23467888


Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHH
Q 019306          274 LMIVSFLLQAADTVLKEVIFLDA  296 (343)
Q Consensus       274 L~ilS~ip~A~SnV~kE~~F~~~  296 (343)
                      ++..+....++-=++-.++.+|.
T Consensus       168 lv~~aS~~sGlRW~~tQ~ll~~~  190 (349)
T KOG1443|consen  168 LVLAASLLSGLRWAFTQMLLRNQ  190 (349)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhcC
Confidence            99999999999999999988774

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.90  E-value=0.012  Score=56.63  Aligned_cols=135  Identities=19%  Similarity=0.178  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccc---hhhhcCCC--cceehhh
Q 019306          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPK--APFVAVG  190 (343)
Q Consensus       116 ~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it---~eml~~Pk--~kf~imG  190 (343)
                      -++++.+.+ +++....+..|...++.+..++-+-..++..-++..+.....-. .+...   +-..+-|.  +..++.+
T Consensus       155 G~~ll~~sl-~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSL-LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            344444444 44555666777777766666643333333221222221111100 11000   00112222  3345567


Q ss_pred             HHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (343)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv  252 (343)
                      ++-++++...+.-...+++....+....--+.++++|.++.+++++..||+|++++++|+.+
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence            78888888888777788888899999999999999999999999999999999999988765

; GO: 0055085 transmembrane transport

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.04  Score=54.18  Aligned_cols=108  Identities=14%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             cccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHHHHHHHHhHHHH
Q 019306          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA  283 (343)
Q Consensus       204 ~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~lL~ilS~ip~A  283 (343)
                      +.|.+.+-+++=+....||++++++.+||.|=+..-+.||+++++|..+    |.+.+++.+.-.+.|.++-++|++.-|
T Consensus       123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l----GvdqE~~~~~ls~~GvifGVlaSl~vA  198 (347)
T KOG1442|consen  123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL----GVDQEGSTGTLSWIGVIFGVLASLAVA  198 (347)
T ss_pred             hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee----ccccccccCccchhhhHHHHHHHHHHH
Confidence            4588888888999999999999999999999999999999999999776    555555566778899999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCC-CC-eEEEeeehhhhHHHHhhh
Q 019306          284 ADTVLKEVIFLDAAQRLKGG-VD-LFVVNSYGSAFQDVMVHR  323 (343)
Q Consensus       284 ~SnV~kE~~F~~~~~~LK~~-ld-if~vns~~s~fQ~ifv~~  323 (343)
                      +-.++-.+..        ++ .| +|.+..+.+++-.+.-+|
T Consensus       199 lnaiytkk~l--------~~v~~~iw~lt~ynnv~a~lLflp  232 (347)
T KOG1442|consen  199 LNAIYTKKVL--------PPVGDCIWRLTAYNNVNALLLFLP  232 (347)
T ss_pred             HHHHhhheec--------ccccCeehhhHHHHHHHHHHHHHH
Confidence            8888766432        23 45 566666666665544433

>TIGR00803 nst UDP-galactose transporter

Probab=95.70  E-value=0.012  Score=53.89  Aligned_cols=107  Identities=18%  Similarity=0.065  Sum_probs=71.3

Q ss_pred             hhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCc
Q 019306          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGA  267 (343)
Q Consensus       188 imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~  267 (343)
                      +++..=...+.+...+..+..+.-.+.. |.-+..+++++...+++|.+..|+.+......|+.++-...........++
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~   82 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN   82 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence            3444445556666666666666666666 777788888888888888888888776666666554433221111112345


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 019306          268 GIFWSLLMIVSFLLQAADTVLKEVIFLD  295 (343)
Q Consensus       268 ~vlw~lL~ilS~ip~A~SnV~kE~~F~~  295 (343)
                      .+.+....+.++...++..+|+|+.+|+
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~  110 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKD  110 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccC
Confidence            6677777888889999999999998664

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.54  E-value=0.01  Score=56.23  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=60.4

Q ss_pred             ceehh-hHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306          185 PFVAV-GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (343)
Q Consensus       185 kf~im-GllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv  252 (343)
                      ..+.+ ++....+..+.+.|.++.+.+....+.+...++..+++++++|++.+..|++|..++++|+.+
T Consensus       212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            33444 466788888999999999999999999999999999999999999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=0.036  Score=55.14  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=61.0

Q ss_pred             ehhhHH-HHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          187 VAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       187 ~imGll-Dal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      ...|++ =.+|.+.-+.||.+-|.++..-|....++.+.+++.+|||+|.+..-.+||++|++|-.+.+.-
T Consensus        67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            344533 4568888899999999999999999999999999999999999999999999999996666653

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=94.42  E-value=0.012  Score=49.34  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEe
Q 019306          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (343)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v  254 (343)
                      .+-..+.++...+....|.+....+-+....++++++++++|.|.+..|++|+.++++|+++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3455677777788888888887666679999999999999999999999999999999987643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=93.88  E-value=0.19  Score=48.07  Aligned_cols=70  Identities=20%  Similarity=0.157  Sum_probs=60.3

Q ss_pred             ehhhHHH-HHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          187 VAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       187 ~imGllD-al~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      +.+|.+- +.+..+.+.|.++++.+...++.....++.+++++++++++.+..|++|+.++++|++.....
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            4567664 455557799999999999999999999999999999999999999999999999887765433

>PRK11689 aromatic amino acid exporter; Provisional

Probab=93.64  E-value=0.086  Score=50.44  Aligned_cols=70  Identities=11%  Similarity=-0.005  Sum_probs=62.1

Q ss_pred             ehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       187 ~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      +..|+.-.++.++.+.+.++++++...++.-...++.+++++++|+++.+..|++|++++++|+.+....
T Consensus       219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            4456667778888899999999999999999999999999999999999999999999999998776543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=93.30  E-value=0.14  Score=51.22  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       189 mGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      .|..-.++-.+-+.+..+.+++-..+......++++++++++|+++.+..|++|++++++|+.++..+
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            34444555566677888999999999999999999999999999999999999999999999886543

>TIGR00803 nst UDP-galactose transporter

Probab=93.13  E-value=0.25  Score=45.10  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=60.6

Q ss_pred             eehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (343)
Q Consensus       186 f~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv  252 (343)
                      ...+.++-+.++.+......|.+.....+....-+.++.++|+++.+...+..|++|+.+|+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4456677888889988888899999999999999999999999999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=92.68  E-value=0.19  Score=45.83  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=61.5

Q ss_pred             ceehhhHHHH-HHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEe
Q 019306          185 PFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (343)
Q Consensus       185 kf~imGllDa-l~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v  254 (343)
                      .....|++.. ++.++...+....+.....++....+++.+++++++++++.+..|++|+.++++|+.+..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            4566677777 699999999999999999999988899999999999999999999999999888876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=91.84  E-value=0.28  Score=48.57  Aligned_cols=62  Identities=11%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             HHHHHHHHHH----HhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeE
Q 019306          191 LLEALAAATG----MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (343)
Q Consensus       191 llDal~~~L~----viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv  252 (343)
                      ++-.+..++.    +.+..++++....+.+..--++++++++++++...+..|++|++++++|+++
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            3344444443    4588899999999999999999999999999999999999999999999764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=91.25  E-value=0.097  Score=50.38  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=64.6

Q ss_pred             cceehhhHHHHHHHHHHHhhcc-cccccHHHHhccchHHHHHHHHHHHhccccceeee----ehhheeeeeeeEEee
Q 019306          184 APFVAVGLLEALAAATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVIITVA  255 (343)
Q Consensus       184 ~kf~imGllDal~~~L~viA~~-ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi----~G~~IVliGliv~v~  255 (343)
                      |+-++.|++-..++.+.+.+.+ +.+.+...++.|.-.+...+++++++|++.+..|+    +|++++++|+++...
T Consensus       212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            4455688888999999999999 99999999999999999999999999999999999    999999998877543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=91.18  E-value=0.2  Score=47.43  Aligned_cols=116  Identities=17%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeecCCCCCCCCCCcchHHHH
Q 019306          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (343)
Q Consensus       194 al~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~sgs~~g~s~~~~~vlw~l  273 (343)
                      ..+|++-..|+.-.+++...-+.+..--|+-+++++.||.|+...+++.+.+.+.|+++....|.  .+   ..++++..
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN--~~---a~e~iGi~  138 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN--EH---ADEIIGIA  138 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc--hh---hhhhhhHH
Confidence            45899999999999999999999999999999999999999999999999999999998876642  11   35688888


Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHhhcCC--CCeEEEeeehhhhHHHHh
Q 019306          274 LMIVSFLLQAADTVLKEVIFLDAAQRLKGG--VDLFVVNSYGSAFQDVMV  321 (343)
Q Consensus       274 L~ilS~ip~A~SnV~kE~~F~~~~~~LK~~--ldif~vns~~s~fQ~ifv  321 (343)
                      ..+.|+...|+--|.-...       +.+.  -|.-.+.+.-++|..+|.
T Consensus       139 ~AV~SA~~aAlYKV~FK~~-------iGnAn~Gdaa~FmS~LGF~NL~~~  181 (290)
T KOG4314|consen  139 CAVGSAFMAALYKVLFKMF-------IGNANFGDAAHFMSCLGFFNLCFI  181 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------hccCcchhHHHHHHHHHHHHHHHH
Confidence            8888888777655543332       2211  444444555555555554

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=91.16  E-value=0.077  Score=50.80  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             ehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          187 VAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       187 ~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      +..|..-+.+..+.+.|+++.+.+...++.-...++.+++++++++++.+..|++|+.++++|+.+...+
T Consensus       217 ~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        217 IAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3356678899999999999999999999999999999999999999999999999999998887776654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=90.29  E-value=0.16  Score=43.52  Aligned_cols=72  Identities=15%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             CcceehhhHHHHHHHHHHHhhcccccccHH-HHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEe
Q 019306          183 KAPFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (343)
Q Consensus       183 k~kf~imGllDal~~~L~viA~~ytsgs~~-~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v  254 (343)
                      .|+|+++=++...|.++-++....++.++. ++-|.....+|++..+++-++.-+...++|+.+++.|+.+++
T Consensus        41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            478999889999999999999999999986 566899999999999877777777888999999999998763

Many members are annotated as potential transmembrane proteins.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=89.92  E-value=0.094  Score=50.02  Aligned_cols=68  Identities=12%  Similarity=0.026  Sum_probs=59.1

Q ss_pred             eehhhHH-HHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEE
Q 019306          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (343)
Q Consensus       186 f~imGll-Dal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~  253 (343)
                      .+.+|++ -+.+..+.+.+.++.+.+...++.....++.+++++++++++.+..|++|++++++|+.+.
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            3444554 5677778888999999999999999999999999999999999999999999999988664

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=89.65  E-value=0.4  Score=41.53  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHHHHHHhcCccchhhhcCCCcceehhh-HHHHHHH
Q 019306          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG-LLEALAA  197 (343)
Q Consensus       119 i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il~~r~~~~~it~eml~~Pk~kf~imG-llDal~~  197 (343)
                      ++++.-+++++.-.++.|...+++++-+.....+.. ..          ..           .....+++.| .+-+++-
T Consensus         5 ~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~-~~----------~~-----------~~p~~~i~lgl~~~~la~   62 (129)
T PRK02971          5 LWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAA-LL----------AF-----------GLALRAVLLGLAGYALSM   62 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHH-HH----------HH-----------hccHHHHHHHHHHHHHHH
Confidence            456666777888899999998877643322211000 00          00           0001123333 2344444


Q ss_pred             HHHHhhcccccccHHHHhccchHHHHHHHHHH--HhccccceeeeehhheeeeeeeEEee
Q 019306          198 ATGMAAGAILSGASIPILSQTFLVWQILLSII--FLGRRYRVNQLFGCFLVGIGVIITVA  255 (343)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~i--fLk~RY~~~qi~G~~IVliGliv~v~  255 (343)
                      ++-..+....+.+...-+......++++.++.  ++|++.+..|++|+.++++|++++..
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            55555555555555443333334566666664  89999999999999999999988654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=87.56  E-value=0.72  Score=43.98  Aligned_cols=56  Identities=21%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             HHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEE
Q 019306          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (343)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~  253 (343)
                      .+.+.+..++++....+....--++++++++++++++.+..|++|..++++|+.+.
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            45556788999999999988888888899999999999999999999999988664

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=86.86  E-value=0.23  Score=42.75  Aligned_cols=72  Identities=10%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             ceehhhHHHHHHHHHHHhhcccccccH-HHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          185 PFVAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       185 kf~imGllDal~~~L~viA~~ytsgs~-~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      ++++.-.+=+++-++...+..+.|.+. +.+....-+..+.+.+.+|++.+.+..|++|..++++|++..-..
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            445555566666677777777777776 466677889999999999999999999999999999999877544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=86.03  E-value=4.4  Score=38.51  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhhhHhHHHHH-HHHHhcCccchhhhcCCCc--ceehhhH
Q 019306          115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHAGIVTDEMLSMPKA--PFVAVGL  191 (343)
Q Consensus       115 ~~v~i~~i~~Vi~Gv~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~yv~vyf~il-~~r~~~~~it~eml~~Pk~--kf~imGl  191 (343)
                      +-+...++..++.|.+....-|+.-.  .+-|.+.-+++-+.|=+++..+. ..+. .+.+.++. -+.+|  ...++-+
T Consensus       114 ~G~~~vl~~~~~S~~agVy~E~~lK~--~~~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g-~f~G~~~~~~~~i~  189 (244)
T PF04142_consen  114 LGLLAVLAAAFLSGFAGVYFEKLLKR--SNVSLWIQNMQLYLFGILFNLLALLLSD-GSAISESG-FFHGYSWWVWIVIF  189 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCC-chhhcchHHHHHHH
Confidence            44445555666778888777787744  33454444433333322222222 2221 11222221 12222  2344567


Q ss_pred             HHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhhee
Q 019306          192 LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV  246 (343)
Q Consensus       192 lDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IV  246 (343)
                      +-+.+++++.+-..|.+.-.=..-....|..+.++|.++.+.+++..-++|+.+|
T Consensus       190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            8999999999999999988888889999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=84.64  E-value=2  Score=41.02  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=56.9

Q ss_pred             eehhhHH-HHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       186 f~imGll-Dal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      .+.+|++ -+.+-.+.+.+.++.++....++.....++.+++++++|+.+.+..|++|..++++|+.+...+
T Consensus       217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            3445543 3455556667778888888888888888999999999999999999999999999998876544

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=83.78  E-value=1.6  Score=42.53  Aligned_cols=70  Identities=21%  Similarity=0.198  Sum_probs=58.5

Q ss_pred             CcceehhhHHHHHHHHHHHhhcccccccHHHHhccchHHHHHHHHHHHhccccceeee----ehhheeeeeeeE
Q 019306          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVII  252 (343)
Q Consensus       183 k~kf~imGllDal~~~L~viA~~ytsgs~~~LL~Q~~IP~tmllS~ifLk~RY~~~qi----~G~~IVliGliv  252 (343)
                      .|+=++-|++-..+|+...++.+......---|.|..+..+.+...++||++=+..|+    +|++++++|.++
T Consensus       195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            4677888999999999999999998888889999999999999999999987555544    566666666543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=83.77  E-value=0.74  Score=33.03  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             eeeeccccCCCCceEEEecCCccccccCCC
Q 019306           33 YLRDHHANQRLPTTLLFRSSKRNYYHNNSN   62 (343)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (343)
                      ||..+++||-+|.-=++-||||++|+|+..
T Consensus         3 ~i~~~~RnQ~llmN~~v~sskr~~s~Enk~   32 (42)
T PF12398_consen    3 PIVNRQRNQDLLMNGMVLSSKRQLSGENKT   32 (42)
T ss_pred             ccccccccccccccceEEeccccccccCcc
Confidence            355567899998777788999999998754

The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.67
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.32

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.67  E-value=0.0029  Score=54.10  Aligned_cols=73  Identities=22%  Similarity=0.157  Sum_probs=50.9

Q ss_pred             cceehhhHHHHHHHHHHHhhcccccccHHHHh-ccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       184 ~kf~imGllDal~~~L~viA~~ytsgs~~~LL-~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      |++++..++-+++-++...|+.+.|.+....+ .....++++++++++|+.+.+..|++|+.++++|+++....
T Consensus        31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44555567788888999999999999976555 89999999999999999999999999999999998887554

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.32  E-value=0.0038  Score=50.93  Aligned_cols=72  Identities=22%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             ceehhhHHHHHHHHHHHhhcccccccHHHHh-ccchHHHHHHHHHHHhccccceeeeehhheeeeeeeEEeec
Q 019306          185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (343)
Q Consensus       185 kf~imGllDal~~~L~viA~~ytsgs~~~LL-~Q~~IP~tmllS~ifLk~RY~~~qi~G~~IVliGliv~v~s  256 (343)
                      +.++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus        32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3444445667777888888899998887555 89999999999999999999999999999999998876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00