Citrus Sinensis ID: 019312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MRLFLFSPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Secondary Structure (PSIPRED)
cEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHccccEEEccHHHHccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccEEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHccccEEEEcccEEEEccccEccccccHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHcHHcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrlflfspptpacyhhqqqqhyssfyspflhpkrrrsrwRKTVmastshtpapahskkdKLVVIMGAtgtgksglsidlatrffpseiinsdkmqvykgldittnkipshkrhnvphhllgefvpddveftpddfrlQADNAISDIisrkktpllvggsnsFIYSLLVQEYDrglsvfddrfdsdsvssslrynccfLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEffdsdrmrnnnsvSLGVGLLKaigvpeferyfkmyppasvevkgewdpvrrgvYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Flexible Loop (DISEMBL)
MRLFLFSPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMastshtpapahskkdkLVVIMGATgtgksglsidLATRFFPSeiinsdkmqvYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISdiisrkktpllvggSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEffdsdrmrnnNSVSLGVGLLKAIGVPEFERYFKMYppasvevkgewdpVRRGVYQearqidkilkleragwdlrRLDATTAFRMLVngdqewrcvwerqvvepsvkivkrflde
Low Complexity Region (SEG)
MRLFLFSPPTPACyhhqqqqhyssfysPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGlsvfddrfdsdsvssslrYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Disordered region (IsUnstruct)
***********ACYHH****HYSSFYSPFL******************************LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVF*************RYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRF***
Disordered Region (DISOPRED)
MRLFLFSPPTPACYHHQQQQ*****************************************VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Disordered Region (DISEMBL)
MRLFLFSPPTPACYHHQQQQHYSSFYSPFLHP************************KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Disordered Region (DISPRO)
*RLFLFSPPTPACYHHQQQQHYSSFYSPFLHPK***********************KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLFLFSPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q5GHF7	329	Adenylate isopentenyltran	N/A	no	0.825	0.860	0.581	7e-88
Q94ID3	357	Adenylate isopentenyltran	yes	no	0.862	0.829	0.483	5e-79
Q9LJL4	330	Adenylate isopentenyltran	no	no	0.897	0.933	0.474	6e-78
Q9C6L1	342	Adenylate isopentenyltran	no	no	0.848	0.850	0.461	3e-73
Q9SB60	318	Adenylate isopentenyltran	no	no	0.801	0.864	0.465	2e-68
Q93WC9	336	Adenylate isopentenyltran	no	no	0.766	0.782	0.428	6e-54
Q94ID2	330	Adenylate isopentenyltran	no	no	0.766	0.796	0.393	3e-51
Q94ID1	329	Adenylate isopentenyltran	no	no	0.755	0.787	0.378	7e-45
B9M3M9	326	tRNA dimethylallyltransfe	yes	no	0.504	0.530	0.336	3e-23
P07884	428	tRNA dimethylallyltransfe	yes	no	0.565	0.453	0.292	2e-22

>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1

 Score =  324 bits (830), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 178/306 (58%), Positives = 215/306 (70%), Gaps = 23/306 (7%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           +K+KL+V+MGATGTGKS LSIDLA  F P E+INSDKMQVYKGLDITTNKI    R  VP
Sbjct: 28  RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 86

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD-RGL 175
           HHLLGE  P   E TP DFR  A  A+S+I  R+K P+LVGGSNSFI++LLV  +D  G 
Sbjct: 87  HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 146

Query: 176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDR 235
            VF++   S  VSS LRY+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+  + 
Sbjct: 147 GVFEEGSHS-VVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 205

Query: 236 MRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------ 286
             ++   +   GL KAIGVPEF+RYF+ + P  VE  GE    D VRRG ++EA      
Sbjct: 206 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKE 263

Query: 287 -------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIV 337
                  RQI KIL+L+ AGWDLRRLDAT +FR  +  D   +C  +WE+QV+EPSVKIV
Sbjct: 264 NTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIV 323

Query: 338 KRFLDE 343
            RFLDE
Sbjct: 324 SRFLDE 329

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP, ADP and AMP. GMP, IMP, CMP or UMP are not used as substrates.
Humulus lupulus (taxid: 3486)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 4

>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=IPT1 PE=1 SV=2

 Score =  295 bits (754), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/325 (48%), Positives = 215/325 (66%), Gaps = 29/325 (8%)

Query: 35  RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM 94
           +R R  + +++S     + + ++KDK+VVI+GATG GKS LS+DLATRF PSEIINSDK+
Sbjct: 41  KRRRKHQPLVSSIRMEQSRSRNRKDKVVVILGATGAGKSRLSVDLATRF-PSEIINSDKI 99

Query: 95  QVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPL 154
           QVY+GL+ITTN+I    R  VPHHLLG   P+  E T  +FR  A N + +I SR+K P+
Sbjct: 100 QVYEGLEITTNQITLQDRRGVPHHLLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPI 159

Query: 155 LVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDS--VSSSLRYNCCFLWVDSSLQLLYDYLN 212
           + GGSNSF+++LL Q +D       D F S S  +SS LRY CCF+WVD S  +LY+YL 
Sbjct: 160 IAGGSNSFVHALLAQRFDPKF----DPFSSGSCLISSDLRYECCFIWVDVSETVLYEYLL 215

Query: 213 KRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVK 272
           +RVD+M++SGMFEEL+ F+D  +    + +    G+ KAIGVPEF+ YFK YPP    +K
Sbjct: 216 RRVDEMMDSGMFEELSRFYDPVK----SGLETRFGIRKAIGVPEFDGYFKEYPPEKKMIK 271

Query: 273 GEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFR---MLVN 316
             WD +R+  Y +A             RQ+ KI  L+ AGW++ R+DAT +F+   M  +
Sbjct: 272 --WDALRKAAYDKAVDDIKRNTWTLAKRQVKKIEMLKDAGWEIERVDATASFKAVMMKSS 329

Query: 317 GDQEWRCVWERQVVEPSVKIVKRFL 341
            +++WR  WE QV+EPSVKIVKR L
Sbjct: 330 SEKKWRENWEEQVLEPSVKIVKRHL 354

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP, ADP and AMP. Adenine, adenosine, isopentenylpyrophosphate and 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBDP) are not used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis thaliana GN=IPT8 PE=2 SV=1

 Score =  291 bits (744), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 161/339 (47%), Positives = 214/339 (63%), Gaps = 31/339 (9%)

Query: 19  QQHYSSFYSPFLHP---KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGL 75
           Q   S+F SP + P    R R    ++V+  T  T     S K K+VVIMGATG+GKS L
Sbjct: 2   QNLTSTFVSPSMIPITSPRLRLPPPRSVVPMT--TVCMEQSYKQKVVVIMGATGSGKSCL 59

Query: 76  SIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF 135
           SIDLATRF   EI+NSDK+Q Y GL +TTN++   +R  VPHHLLGE  PDD E T  +F
Sbjct: 60  SIDLATRF-SGEIVNSDKIQFYDGLKVTTNQMSILERCGVPHHLLGELPPDDSELTTSEF 118

Query: 136 RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNC 195
           R  A  +IS+I +R   P++ GGSNSFI++LLV  +D     F       S+SS LRY C
Sbjct: 119 RSLASRSISEITARGNLPIIAGGSNSFIHALLVDRFDPKTYPFSSE---TSISSGLRYEC 175

Query: 196 CFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVP 255
           CFLWVD S+ +L++YL+KRVD M+ESGMFEELA F+D    R + S     G+ K IG+P
Sbjct: 176 CFLWVDVSVSVLFEYLSKRVDQMMESGMFEELAGFYDP---RYSGSAIRAHGIHKTIGIP 232

Query: 256 EFERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDL 302
           EF+RYF +YPP   +   EWD  R+G Y EA             +QI++I+KL+ +GWD+
Sbjct: 233 EFDRYFSLYPPERKQKMSEWDQARKGAYDEAVQEIKENTWRLAKKQIERIMKLKSSGWDI 292

Query: 303 RRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
           +RLDAT +F       +  R +W+  V++ S+K+VKRFL
Sbjct: 293 QRLDATPSF------GRSSREIWDNTVLDESIKVVKRFL 325

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis thaliana GN=IPT6 PE=2 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/321 (46%), Positives = 200/321 (62%), Gaps = 30/321 (9%)

Query: 44  MASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103
           + +T    A   + KDK+V+I G TGTGKS LS+DLATRFFP+EIINSDKMQ+YKG +I 
Sbjct: 30  LVTTCMGHAGRKNIKDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIV 89

Query: 104 TNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFI 163
           TN IP H++  VPHHLLG+F P D E TP +FR  A  +IS +IS KK P++VGGSNSF 
Sbjct: 90  TNLIPLHEQGGVPHHLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFN 149

Query: 164 YSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGM 223
           ++LL + +D  +  F       ++ S LRY CC LWVD    +L+ +L  RVD M+ESG+
Sbjct: 150 HALLAERFDPDIDPFSPGSSLSTICSDLRYKCCILWVDVLEPVLFQHLCNRVDQMIESGL 209

Query: 224 FEELAEFFDS--DRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRG 281
            E+LAE +D   D  R        +G+ K IGV EF+RYF++YP      KG WD  R+ 
Sbjct: 210 VEQLAELYDPVVDSGRR-------LGVRKTIGVEEFDRYFRVYPKEM--DKGIWDLARKA 260

Query: 282 VYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRMLVNGD------QEWR 322
            Y+E              +Q +KI+KL R GW+++RLDAT A    +N        +  R
Sbjct: 261 AYEETVKGMKERTCRLVKKQKEKIMKLIRGGWEIKRLDATAAIMAELNQSTAKGEGKNGR 320

Query: 323 CVWERQVVEPSVKIVKRFLDE 343
            +WE+ +V+ SV+IVK+FL E
Sbjct: 321 EIWEKHIVDESVEIVKKFLLE 341

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4 PE=1 SV=1

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/305 (46%), Positives = 192/305 (62%), Gaps = 30/305 (9%)

Query: 59  DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHH 118
           DK+VVIMGATG+GKS LS+DLA  F  +EIINSDKMQ Y GL ITTN+     R  VPHH
Sbjct: 5   DKMVVIMGATGSGKSSLSVDLALHF-KAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHH 63

Query: 119 LLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVF 178
           LLGE  P+  E T  +FR+ A  AIS+I  RKK P+L GGSNS+I++LL + YD     F
Sbjct: 64  LLGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKSYDPENYPF 123

Query: 179 DDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN 238
            D     S+ S L+Y+CCF+W+D    +L++YL+ R+D M++SGMFEE+AEF      R+
Sbjct: 124 SDH--KGSICSELKYDCCFIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFH-----RS 176

Query: 239 NNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA------------ 286
             +    +G+ KAIGV EF+ Y KMY   +   K  WDP+R+  Y++A            
Sbjct: 177 KKAPKEPLGIWKAIGVQEFDDYLKMYKWDNDMDK--WDPMRKEAYEKAVRAIKENTFQLT 234

Query: 287 -RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQE-------WRCVWERQVVEPSVKIVK 338
             QI KI KL  AGWD++++DAT +FR  +   +E        R +W ++V+EP VKIV+
Sbjct: 235 KDQITKINKLRNAGWDIKKVDATASFREAIRAAKEGEGVAEMQRKIWNKEVLEPCVKIVR 294

Query: 339 RFLDE 343
             LD+
Sbjct: 295 SHLDQ 299

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP, but not to AMP. Has no DMAPP:tRNA isopentenyltransferase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1

 Score =  211 bits (537), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 185/294 (62%), Gaps = 31/294 (10%)

Query: 55  HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHN 114
           +  KDK+VVIMGATGTGKS LS+D+ATRF  +EIINSDK+QV++GLDI TNKI S +   
Sbjct: 37  YGPKDKVVVIMGATGTGKSRLSVDIATRF-RAEIINSDKIQVHQGLDIVTNKITSEESCG 95

Query: 115 VPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRG 174
           VPHHLLG  +P + + T  ++   A+ +I  +++R K P++VGGSNS++ +L+  +    
Sbjct: 96  VPHHLLG-VLPPEADLTAANYCHMANLSIESVLNRGKLPIIVGGSNSYVEALVDDK---- 150

Query: 175 LSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSD 234
               +++F S       RY+CCFLWVD +L +L+ ++++RVD M+ESGM EE+ EFFD  
Sbjct: 151 ----ENKFRS-------RYDCCFLWVDVALPVLHGFVSERVDKMVESGMVEEVREFFDF- 198

Query: 235 RMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE-----WDPVRRGVYQEA-RQ 288
              +N+  S G+   KAIG PEF+R+F+     +VE + E      + ++R  ++ A RQ
Sbjct: 199 ---SNSDYSRGIK--KAIGFPEFDRFFRNEQFLNVEDREELLSKVLEEIKRNTFELACRQ 253

Query: 289 IDKILKLERA-GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
            +KI +L +   W ++R+DAT  F        +    WER V  PS   V RFL
Sbjct: 254 REKIERLRKVKKWSIQRVDATPVFTKR-RSKMDANVAWERLVAGPSTDTVSRFL 306

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/297 (39%), Positives = 173/297 (58%), Gaps = 34/297 (11%)

Query: 53  PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR 112
           P   +KDK+V +MGATGTGKS L+IDLATRF P+EI+NSDK+QVYKGLDI TNK+   + 
Sbjct: 27  PFFRRKDKVVFVMGATGTGKSRLAIDLATRF-PAEIVNSDKIQVYKGLDIVTNKVTPEES 85

Query: 113 HNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD 172
             VPHHLLG       +FT +DF+ +A  A+  I+ R + P++ GGSNS+I +L+     
Sbjct: 86  LGVPHHLLGTVHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALV----- 140

Query: 173 RGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFD 232
                      +D V   LRYNCCFLWVD S  +L+ ++++RVD M++ G+ +E+   FD
Sbjct: 141 -----------NDCVDFRLRYNCCFLWVDVSRPVLHSFVSERVDKMVDMGLVDEVRRIFD 189

Query: 233 SDRMRNNNSVSLGVGLLKAIGVPEFERYFKM----YPPASVE--VKGEWDPVRRGVYQEA 286
                  +S     G+ +AIGVPE + + +     YP  + E  ++   + ++      A
Sbjct: 190 P------SSSDYSAGIRRAIGVPELDEFLRSEMRNYPAETTERLLETAIEKIKENTCLLA 243

Query: 287 -RQIDKILKLERA-GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
            RQ+ KI +L +   W++ R+DAT  F   +   +E    W+  V  PS   V++FL
Sbjct: 244 CRQLQKIQRLYKQWKWNMHRVDATEVF---LRRGEEADEAWDNSVAHPSALAVEKFL 297

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis thaliana GN=IPT7 PE=2 SV=2

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 161/293 (54%), Gaps = 34/293 (11%)

Query: 58  KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
           K+K++ +MGATG+GKS L+IDLATRF   EIINSDK+Q+YKGLD+ TNK+   +   VPH
Sbjct: 33  KEKVIFVMGATGSGKSRLAIDLATRF-QGEIINSDKIQLYKGLDVLTNKVTPKECRGVPH 91

Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSV 177
           HLLG F  +    T   +   A  AIS + +  K P++ GGSNS+I +L+   +  G  +
Sbjct: 92  HLLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALV--NHSSGFLL 149

Query: 178 FDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMR 237
            +             Y+CCF+WVD SL +L  +++KRVD M+E+G+ EE+ E F      
Sbjct: 150 NN-------------YDCCFIWVDVSLPVLNSFVSKRVDRMMEAGLLEEVREVF------ 190

Query: 238 NNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEW-DPVRRGVYQE-----ARQIDK 291
            N   +  VG+ +AIGVPE   Y +         K +  D   + + +       RQ+ K
Sbjct: 191 -NPKANYSVGIRRAIGVPELHEYLRNESLVDRATKSKMLDVAVKNIKKNTEILACRQLKK 249

Query: 292 ILKLERAGW--DLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLD 342
           I +L +  W   + R+DAT  F  L    +E    WE  V  PS +IV +F +
Sbjct: 250 IQRLHKK-WKMSMHRVDATEVF--LKRNVEEQDEAWENLVARPSERIVDKFYN 299

Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|B9M3M9|MIAA2_GEOSF tRNA dimethylallyltransferase 2 OS=Geobacter sp. (strain FRC-32) GN=miaA2 PE=3 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 108/229 (47%), Gaps = 56/229 (24%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           +K KLV I+G T +GK+ L++ LA RF   EI+N+D MQVY+G+DI T K     R  V 
Sbjct: 5   EKIKLVSIVGPTASGKTELAVRLAERF-DGEIVNADSMQVYRGMDIGTAKPSVSLRSRVT 63

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL---------- 166
           HHL+ + V  DV F+  DFR  AD AI+DI SR K   +VGG+  +I +L          
Sbjct: 64  HHLI-DIVTPDVNFSASDFRRAADGAIADIHSRGKRVFIVGGTGLYIRALLQGLVDSPSG 122

Query: 167 ----------------------LVQEYD----------------RGLSVFDD------RF 182
                                 L+ E D                R L V+        +F
Sbjct: 123 DEQIRGELNELAKEIGNEGLLQLLAEVDPITAERLHHNDRVRIIRALEVYRQTGRPMSQF 182

Query: 183 DSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFF 231
             +   +   Y+C  L ++   Q LY  + KRVD+M+ESG+  E+ E F
Sbjct: 183 RQEHGFAEEMYDCLMLGINVERQELYSRVEKRVDEMVESGLAAEVEELF 231

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).

Geobacter sp. (strain FRC-32) (taxid: 316067)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1 SV=2

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 59/253 (23%)

Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
           K++VI G TG GKS LSI LA +F   E+INSD MQVYK + I TNK P  +R  +PHH+
Sbjct: 15  KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 73

Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD------- 172
           +   V    E+    F  +  NAI DI  R K P++VGG++ ++ +L  +  D       
Sbjct: 74  MNH-VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 132

Query: 173 -----------------------------------------RGLSVF-------DDRFDS 184
                                                    R L ++        + F+ 
Sbjct: 133 LTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNE 192

Query: 185 DSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSL 244
             ++  L+++  FLW+ S  + L+  L+ RVDDMLE G  +E+ + ++            
Sbjct: 193 QKIT--LKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQC 250

Query: 245 GVGLLKAIGVPEF 257
             G+ + IG  EF
Sbjct: 251 ENGVWQVIGFKEF 263

Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in the anticodon loop on a specific subset of tRNAs both in the cytosol and the mitochondrion, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). This modification optimizes the codon:anticodon fit in the ribosome and promotes translational fidelity. Competes with the farnesyl pyrophosphate synthase ERG20 for the common substrate dimethylallyl diphosphate (DMAPP).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
325112800	370	adenylate isopentenyltransferase [Malus	0.924	0.856	0.531	3e-90
325112802	370	adenylate isopentenyltransferase [Malus	0.930	0.862	0.528	1e-89
255572084	332	adenylate dimethylallyltransferase, puta	0.886	0.915	0.540	5e-88
59939331	312	adenylate isopentenyltransferase [Morus	0.848	0.932	0.582	1e-87
356536306	304	PREDICTED: adenylate isopentenyltransfer	0.830	0.937	0.572	3e-86
282403612	339	Chain A, Plant Adenylate Isopentenyltran	0.825	0.834	0.581	3e-86
75105117	329	RecName: Full=Adenylate isopentenyltrans	0.825	0.860	0.581	4e-86
224099381	362	cytokinin biosynthetic isopentenyltransf	0.921	0.872	0.528	4e-86
357444751	372	Adenylate isopentenyltransferase [Medica	0.947	0.873	0.502	5e-86
147778591	373	hypothetical protein VITISV_000274 [Viti	0.935	0.860	0.515	3e-85

>gi|325112800|gb|ADY80561.1| adenylate isopentenyltransferase [Malus x domestica]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/344 (53%), Positives = 232/344 (67%), Gaps = 27/344 (7%)

Query: 20  QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL 79
            H  +  +P LH  +R  R        TS  P     +KDKL+VIMGATG GKS LS+DL
Sbjct: 34  HHLYNHPTPPLHLPQRPRRSAHMATGPTSAGP----RRKDKLLVIMGATGAGKSRLSLDL 89

Query: 80  ATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA 139
           A+RF   EI+NSDK+Q+Y+GLDITTNK+P  +R  VPHHLLGEF P D +FTP DFR  A
Sbjct: 90  ASRFPFFEIVNSDKIQLYRGLDITTNKLPLPERLGVPHHLLGEFDPLDGDFTPADFRAVA 149

Query: 140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLW 199
              +S I +R+K P+LVGGSNSFI++++ + ++ G +VF+  FD+ SVS+ LRYNCCFLW
Sbjct: 150 GQVVSGITNRRKVPMLVGGSNSFIHAMVAERFEPGSNVFEPGFDA-SVSAELRYNCCFLW 208

Query: 200 VDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFER 259
           VD S+ +L +YL+KRVD+ML+SGMF+ELAEF D DR    +  ++  GL KAIGVPEF R
Sbjct: 209 VDVSMAVLTEYLSKRVDEMLDSGMFDELAEFCDPDRQDKKDPAAVPTGLRKAIGVPEFTR 268

Query: 260 YFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLD 306
           YFK YP +  +   +    RRG Y+EA             RQI KIL+L   GWDLRRLD
Sbjct: 269 YFKKYPQSKRDEDDDR--ERRGAYEEAVRVIKDNTCQLAKRQIGKILRLRGGGWDLRRLD 326

Query: 307 ATTAFRMLV-------NGDQEWRCVWERQVVEPSVKIVKRFLDE 343
           AT AFR +V       +G + W  +WERQVVEPS KIVKRFL+E
Sbjct: 327 ATDAFRAVVATSTPENDGGERWSEIWERQVVEPSAKIVKRFLEE 370

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325112802|gb|ADY80562.1| adenylate isopentenyltransferase [Malus x domestica]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/346 (52%), Positives = 231/346 (66%), Gaps = 27/346 (7%)

Query: 18  QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI 77
           Q  H  +  +  LH  +R  RW       TS  P     +KDKL+VIMGATG GKS LS+
Sbjct: 32  QLHHLYNHPTHPLHLPQRPRRWAHMATGHTSAVP----RRKDKLLVIMGATGAGKSRLSL 87

Query: 78  DLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137
           DLATRF   EIINSDK+Q+Y+GLDITTNK+P  +R  VPHHLLGE  P D +FTP DFR 
Sbjct: 88  DLATRFPFFEIINSDKIQLYRGLDITTNKLPLPERLGVPHHLLGELDPRDGDFTPADFRA 147

Query: 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF 197
            A   +S I +R+K P+LVGGSNSFI++++   ++ G +VF+   D+ S+S+ LRYNCCF
Sbjct: 148 VAGQVVSGITNRRKVPMLVGGSNSFIHAMVADRFEPGCNVFEPGSDA-SLSAELRYNCCF 206

Query: 198 LWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEF 257
           LWVD S+ +L +YL+KRVD+ML+SGMFEELAEF D DR   ++  ++  GL KAIGVPEF
Sbjct: 207 LWVDVSMAVLTEYLSKRVDEMLDSGMFEELAEFCDPDRQDKHDPAAVPTGLRKAIGVPEF 266

Query: 258 ERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRR 304
            RYFK YP +  +   +    RRG Y+EA             RQI K+L+L   GWDLRR
Sbjct: 267 TRYFKKYPQSKRDEDDDR--ERRGAYEEAVRAIKDNTCQLAKRQIGKVLRLRGGGWDLRR 324

Query: 305 LDATTAFRMLV-------NGDQEWRCVWERQVVEPSVKIVKRFLDE 343
           LDAT AFR +V       +G + W  +WERQVV PSVKIVKRFL+E
Sbjct: 325 LDATDAFRAVVATTSSDSDGGERWSDIWERQVVGPSVKIVKRFLEE 370

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572084|ref|XP_002526982.1| adenylate dimethylallyltransferase, putative [Ricinus communis] gi|223533617|gb|EEF35354.1| adenylate dimethylallyltransferase, putative [Ricinus communis]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 185/342 (54%), Positives = 231/342 (67%), Gaps = 38/342 (11%)

Query: 21  HYSSFYSP------FLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSG 74
           H+S +  P       + P RR+S  R   M S+S  P+P   +KDK+VVIMGATG GK+ 
Sbjct: 10  HHSHYTPPPLLPVTIIKPTRRKSPPRWVRMDSSS--PSPPKQQKDKIVVIMGATGCGKTR 67

Query: 75  LSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDD 134
           LSIDLATRF  SEIIN+DKMQVYKGLDITTNKI    R  VPHHLLGE  PD+ EF+P D
Sbjct: 68  LSIDLATRF-QSEIINTDKMQVYKGLDITTNKITLQDRLGVPHHLLGEVDPDNCEFSPSD 126

Query: 135 FRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYN 194
           FRL A  +ISDI+SR+K PLLVGGSNS+I++LLV  ++  ++VF    +S+SVS+ LRY+
Sbjct: 127 FRLHAGLSISDIVSRQKLPLLVGGSNSYIHALLVDRFNPEINVFQQSKNSESVSTQLRYD 186

Query: 195 CCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGV 254
           CCF+WVD SL LL DYL KRVD+ML+SGMFEEL+E++ S    +        GL KAIGV
Sbjct: 187 CCFIWVDVSLPLLCDYLCKRVDEMLDSGMFEELSEYYASVNPESQP------GLRKAIGV 240

Query: 255 PEFERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWD 301
           PEF+RYFK YPP      G+WD V+RGVY+EA             RQ+ KIL+L+ AGWD
Sbjct: 241 PEFDRYFKKYPPGY--QGGKWDFVQRGVYEEAVRMIKENTCQLAKRQMGKILRLKSAGWD 298

Query: 302 LRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE 343
           L R              ++W  +WER V++PS+KIV  FLDE
Sbjct: 299 LHRKKRKKK--------KKWMEIWERDVLKPSMKIVNHFLDE 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|59939331|gb|AAX12424.1| adenylate isopentenyltransferase [Morus alba]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/316 (58%), Positives = 218/316 (68%), Gaps = 25/316 (7%)

Query: 46  STSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105
           S+S      H  KDKL+VIMGATGTGKS LS++LAT F   EIINSDKMQVYKGLD TTN
Sbjct: 4   SSSAARRHRHHPKDKLLVIMGATGTGKSRLSVELATHF-NGEIINSDKMQVYKGLDTTTN 62

Query: 106 KIPSHKRHNVPHHLLGEFVPD-DVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIY 164
           KIP   R  VPHHLLGE   +   E T  +FR  A  A+S+I +R+K P+L GGSNSFI+
Sbjct: 63  KIPLDDRLGVPHHLLGEVDSEAHGELTRSEFRSLAGKAVSEITARRKLPVLAGGSNSFIH 122

Query: 165 SLLVQEYDRGLSVFDDRFD--SDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESG 222
           +LLV  +D    VFD+R D  +DS    LRYNCCFLWVD SL++L DYL KRVDDML SG
Sbjct: 123 ALLVDRFDPEYDVFDERSDQPADSSKVLLRYNCCFLWVDVSLRVLEDYLLKRVDDMLNSG 182

Query: 223 MFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGV 282
           MF+ELAEF+D +    ++  +   GL KAIGVPEF+RYF+   P     KGEWD VRR  
Sbjct: 183 MFDELAEFYDPE---EDHGPANWTGLRKAIGVPEFDRYFERCRPGE---KGEWDRVRREA 236

Query: 283 YQEA-------------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWER 327
           Y+EA             RQI KIL+L++ GWDLRRLDAT AFR ++  D   RC  +WER
Sbjct: 237 YEEAVREIKENTCQLAKRQIGKILRLKKLGWDLRRLDATEAFRAVMTSDSGKRCSEIWER 296

Query: 328 QVVEPSVKIVKRFLDE 343
           QV+EPSVKIVKRFLDE
Sbjct: 297 QVLEPSVKIVKRFLDE 312

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536306|ref|XP_003536680.1| PREDICTED: adenylate isopentenyltransferase-like [Glycine max]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/309 (57%), Positives = 214/309 (69%), Gaps = 24/309 (7%)

Query: 52  APAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHK 111
           A  H +KDK+VVIMGATG+GKS LSIDLAT F  SEIINSDKMQVY+GLDITTNKIP+ +
Sbjct: 3   ASFHRRKDKVVVIMGATGSGKSRLSIDLATLFPTSEIINSDKMQVYRGLDITTNKIPTAQ 62

Query: 112 RHNVPHHLLGEFVPDDV-EFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQE 170
           R  VPHHLLG+   D   EF+P DFR  A + I+DI  RK  P++VGGSNSF+++LLVQ 
Sbjct: 63  RRGVPHHLLGDVDTDHYGEFSPADFRHHAADLIADITRRKNLPIVVGGSNSFVHALLVQN 122

Query: 171 YD--RGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELA 228
           +D     +VF  + +   +SS LRY CCFLWVD +  +L  YL  RVDDML+SGM +ELA
Sbjct: 123 FDPHSHSNVFQQQQEEALISSELRYRCCFLWVDIAFPVLSQYLRDRVDDMLDSGMVDELA 182

Query: 229 EFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA-- 286
           +FFD D  R       G G+ KAIGVPEF+R+F  YPP+  +  G  DP+R   Y+EA  
Sbjct: 183 QFFDPDAARRT-----GFGIRKAIGVPEFDRFFNKYPPSMGQ--GGDDPLRERAYEEAVK 235

Query: 287 -----------RQIDKILKLERAGWDLRRLDATTAFRM-LVNGDQEWRCVWERQVVEPSV 334
                      RQI KI +L+RAGWDLRR+DAT AFRM L +G      VWERQV+EPSV
Sbjct: 236 AIKDNTCELAERQIGKIERLKRAGWDLRRIDATEAFRMVLTSGSSNGSGVWERQVLEPSV 295

Query: 335 KIVKRFLDE 343
           KIVKRFL E
Sbjct: 296 KIVKRFLME 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282403612|pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/306 (58%), Positives = 215/306 (70%), Gaps = 23/306 (7%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           +K+KL+V+MGATGTGKS LSIDLA  F P E+INSDKMQVYKGLDITTNKI    R  VP
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 96

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD-RGL 175
           HHLLGE  P   E TP DFR  A  A+S+I  R+K P+LVGGSNSFI++LLV  +D  G 
Sbjct: 97  HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 156

Query: 176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDR 235
            VF++   S  VSS LRY+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+  + 
Sbjct: 157 GVFEEGSHS-VVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 215

Query: 236 MRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------ 286
             ++   +   GL KAIGVPEF+RYF+ + P  VE  GE    D VRRG ++EA      
Sbjct: 216 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKE 273

Query: 287 -------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIV 337
                  RQI KIL+L+ AGWDLRRLDAT +FR  +  D   +C  +WE+QV+EPSVKIV
Sbjct: 274 NTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIV 333

Query: 338 KRFLDE 343
            RFLDE
Sbjct: 334 SRFLDE 339

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75105117|sp|Q5GHF7.1|IPT_HUMLU RecName: Full=Adenylate isopentenyltransferase; AltName: Full=Adenylate dimethylallyltransferase; AltName: Full=Cytokinin synthase gi|46430949|gb|AAS94327.1| adenylate isopentenyltransferase [Humulus lupulus]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/306 (58%), Positives = 215/306 (70%), Gaps = 23/306 (7%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           +K+KL+V+MGATGTGKS LSIDLA  F P E+INSDKMQVYKGLDITTNKI    R  VP
Sbjct: 28  RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 86

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD-RGL 175
           HHLLGE  P   E TP DFR  A  A+S+I  R+K P+LVGGSNSFI++LLV  +D  G 
Sbjct: 87  HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 146

Query: 176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDR 235
            VF++   S  VSS LRY+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+  + 
Sbjct: 147 GVFEEGSHS-VVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 205

Query: 236 MRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------ 286
             ++   +   GL KAIGVPEF+RYF+ + P  VE  GE    D VRRG ++EA      
Sbjct: 206 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKE 263

Query: 287 -------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIV 337
                  RQI KIL+L+ AGWDLRRLDAT +FR  +  D   +C  +WE+QV+EPSVKIV
Sbjct: 264 NTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIV 323

Query: 338 KRFLDE 343
            RFLDE
Sbjct: 324 SRFLDE 329

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099381|ref|XP_002311463.1| cytokinin biosynthetic isopentenyltransferase [Populus trichocarpa] gi|222851283|gb|EEE88830.1| cytokinin biosynthetic isopentenyltransferase [Populus trichocarpa]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/352 (52%), Positives = 231/352 (65%), Gaps = 36/352 (10%)

Query: 18  QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI 77
           Q  H  +   PF  P+      R    +ST+ + A    KKDK++VIMGATG GK+ +SI
Sbjct: 20  QPLHPINISIPFNKPRPPPIAVRMDTDSSTTTSTAVYRHKKDKILVIMGATGCGKTRVSI 79

Query: 78  DLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137
           DLATRF  SEIINSDKMQVY+GLDITTNKI    R  VPHHLLGEF PDD E TP ++RL
Sbjct: 80  DLATRF-QSEIINSDKMQVYEGLDITTNKITIQDRLGVPHHLLGEFDPDDGELTPSEYRL 138

Query: 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF 197
               AIS I+SR+  P++VGGSNS I++L+V  ++  L+VFD     + VS+ LRYNCCF
Sbjct: 139 AGGLAISGIVSRQNLPIVVGGSNSLIHALVVDRFNPELNVFD---GCNPVSTQLRYNCCF 195

Query: 198 LWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEF 257
           LWVD SL +L DYL KRVD+ML+SGM +EL+E++ S         +  +GL KAIGVPEF
Sbjct: 196 LWVDVSLPVLCDYLCKRVDEMLDSGMLDELSEYYGS------VDAASQIGLRKAIGVPEF 249

Query: 258 ERYFKMYPPASVEVKG---EWDPVRRGVYQ-------------EARQIDKILKLERAGWD 301
           +RYFK YPP S   +G   EWD VRRGVY+               RQI KIL+L+ AGWD
Sbjct: 250 DRYFKKYPPGSGCGRGIGVEWDRVRRGVYEVCVREIKENTCQLAKRQIGKILRLKGAGWD 309

Query: 302 LRRLDATTAFR--MLVNGD--------QEWRCVWERQVVEPSVKIVKRFLDE 343
           L+R+DAT +FR  M V  D        + W  VW R V+EPS+KIVKRFL+E
Sbjct: 310 LKRVDATESFREVMTVTSDDHIKKRKKKRWMEVWGRDVMEPSMKIVKRFLEE 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444751|ref|XP_003592653.1| Adenylate isopentenyltransferase [Medicago truncatula] gi|355481701|gb|AES62904.1| Adenylate isopentenyltransferase [Medicago truncatula]

 Score =  324 bits (830), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/366 (50%), Positives = 238/366 (65%), Gaps = 41/366 (11%)

Query: 5   LFSPP-------TPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSK 57
             SPP        P  +HH     ++   S   H +RR    R  +  S        H +
Sbjct: 10  FLSPPHSQRHYHKPIQFHHYSHTLFTPSSSSATHTRRRPHCPRMEISPSR-------HRR 62

Query: 58  KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
           KDK+++I+GATG+GKS LS++LAT F  SEIINSDK+QVY+GLDITTNKIP H+R+NVPH
Sbjct: 63  KDKVLIIVGATGSGKSRLSVELATLFPYSEIINSDKIQVYRGLDITTNKIPFHQRNNVPH 122

Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSV 177
           HLLG+  P   EF+P DFR  A + ISDI SR+K P++VGGSNSFI++LLV+ +D   +V
Sbjct: 123 HLLGDIDPSHGEFSPSDFRRHAGDIISDITSRRKLPIIVGGSNSFIHALLVERFDPESNV 182

Query: 178 FDDRFDSDSVSSS-LRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRM 236
           FD+     +  SS LRY CCFLW+D S  +L +YL KRVDDM +SGM  ELAEF++ D  
Sbjct: 183 FDESSSLSTSISSDLRYKCCFLWMDISFPVLSEYLLKRVDDMFDSGMVNELAEFYEPD-- 240

Query: 237 RNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE-WDPVRRGVYQEA--------- 286
            +N +     GL KAIGVPEF+R+FK YPP     + E  +P+R G Y EA         
Sbjct: 241 ADNQT-----GLRKAIGVPEFDRFFKQYPPQVGPDESERHNPMREGAYIEAVKAIKDNTC 295

Query: 287 ----RQIDKILKLERAGWDLRRLDATTAFRMLV-----NGDQEWRCVWERQVVEPSVKIV 337
               RQI KIL+L+RAGWDL+R+DAT AFR ++      G +E+  VW++QV+EPSVKIV
Sbjct: 296 QLAKRQIGKILRLKRAGWDLQRIDATEAFRAVLTSESNGGGEEFTGVWKKQVLEPSVKIV 355

Query: 338 KRFLDE 343
           KRFL E
Sbjct: 356 KRFLME 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778591|emb|CAN73470.1| hypothetical protein VITISV_000274 [Vitis vinifera]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/355 (51%), Positives = 227/355 (63%), Gaps = 34/355 (9%)

Query: 9   PTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGAT 68
           P P  YH    +  +    P + P  RRS W +  M ST       +  K K+VVIMGAT
Sbjct: 33  PVPTGYHPYCSKVQTLPLIPAIKPTFRRSGWAR--MDSTXRR----NRXKHKVVVIMGAT 86

Query: 69  GTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDV 128
           GTGKS LSIDLATRF P+EIINSDK+Q+Y GLDITTNKI  H+R  VPHHLLG+F     
Sbjct: 87  GTGKSKLSIDLATRF-PAEIINSDKIQIYSGLDITTNKIQMHERQGVPHHLLGDFDSSHA 145

Query: 129 EFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVS 188
           E TP  FR  A  AISDI SR+K P+L GGSNSFI++LLV  +D     F+    SDSVS
Sbjct: 146 EITPSQFRSVAAAAISDISSRRKLPVLAGGSNSFIHALLVDRFDSESDPFN---GSDSVS 202

Query: 189 SSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGL 248
           + LRY CCFLWVD S  +L DYL+KRVD+ML SGM EELA+F+D D   +        GL
Sbjct: 203 TELRYRCCFLWVDVSFAVLSDYLSKRVDEMLGSGMLEELAKFYDPDEDESRPK----TGL 258

Query: 249 LKAIGVPEFERYFKMYPPASVEV-----KGEWDPVRRGVYQEA-------------RQID 290
            KAIGVPEF+R+F+ YPP    +     K + D      ++EA             +QI+
Sbjct: 259 RKAIGVPEFDRHFRKYPPVDQGIIAGNPKKKKDDPEMESFEEAVKAIKDNTCHLAKKQIE 318

Query: 291 KILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIVKRFLDE 343
           KIL++  AGWDL+RLDAT AFR+L++ D   +   +WE+QVVEPSVK V+RFL+E
Sbjct: 319 KILRMRGAGWDLKRLDATEAFRVLLSSDSGKKSSEIWEKQVVEPSVKFVRRFLEE 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
UNIPROTKB|Q5GHF7	329	Q5GHF7 "Adenylate isopentenylt	0.877	0.914	0.531	7.9e-78
TAIR|locus:2201292	357	IPT1 "isopentenyltransferase 1	0.868	0.834	0.461	5.5e-70
TAIR|locus:2094128	330	IPT8 "ATP/ADP isopentenyltrans	0.868	0.903	0.458	7.2e-68
TAIR|locus:2031205	342	IPT6 "isopentenyltransferase 6	0.807	0.809	0.465	6e-64
TAIR|locus:2121979	318	IPT4 "isopentenyltransferase 4	0.801	0.864	0.452	3.5e-59
TAIR|locus:2179629	330	IPT5 "isopentenyltransferase 5	0.725	0.754	0.392	9.6e-41
TAIR|locus:2099177	336	IPT3 "isopentenyltransferase 3	0.685	0.699	0.384	6.8e-40
TAIR|locus:2088025	329	IPT7 "isopentenyltransferase 7	0.702	0.732	0.355	2.2e-34
UNIPROTKB|Q9H3H1	467	TRIT1 "tRNA dimethylallyltrans	0.309	0.226	0.476	1.1e-33
MGI|MGI:1914216	467	Trit1 "tRNA isopentenyltransfe	0.309	0.226	0.476	3.7e-33

UNIPROTKB|Q5GHF7 Q5GHF7 "Adenylate isopentenyltransferase" [Humulus lupulus (taxid:3486)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 169/318 (53%), Positives = 208/318 (65%)

Query:    42 TVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD 101
             T   +T+ +      +K+KL+V+MGATGTGKS LSIDLA  F P E+INSDKMQVYKGLD
Sbjct:    13 TTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLD 71

Query:   102 ITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNS 161
             ITTNKI    R  VPHHLLGE  P   E TP DFR  A  A+S+I  R+K P+LVGGSNS
Sbjct:    72 ITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNS 131

Query:   162 FIYSLLVQEYDRGXXXXXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLES 221
             FI++LLV  +D                    Y+CCFLWVD S+++L DYL KRVDDMLE 
Sbjct:   132 FIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLEL 191

Query:   222 GMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEW-DPVRR 280
             GMF+ELAEF+  +   ++   +   GL KAIGVPEF+RYF+ + P  VE +    D VRR
Sbjct:   192 GMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRR 251

Query:   281 GVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VW 325
             G ++EA             RQI KIL+L+ AGWDLRRLDAT +FR  +  D   +C  +W
Sbjct:   252 GAFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIW 311

Query:   326 ERQVVEPSVKIVKRFLDE 343
             E+QV+EPSVKIV RFLDE
Sbjct:   312 EKQVLEPSVKIVSRFLDE 329

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA

GO:0034265 "isopentenyl adenine biosynthetic process" evidence=IC

TAIR|locus:2201292 IPT1 "isopentenyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 150/325 (46%), Positives = 208/325 (64%)

Query:    33 KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD 92
             KRRR    + +++S     + + ++KDK+VVI+GATG GKS LS+DLATRF PSEIINSD
Sbjct:    41 KRRRKH--QPLVSSIRMEQSRSRNRKDKVVVILGATGAGKSRLSVDLATRF-PSEIINSD 97

Query:    93 KMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKT 152
             K+QVY+GL+ITTN+I    R  VPHHLLG   P+  E T  +FR  A N + +I SR+K 
Sbjct:    98 KIQVYEGLEITTNQITLQDRRGVPHHLLGVINPEHGELTAGEFRSAASNVVKEITSRQKV 157

Query:   153 PLLVGGSNSFIYSLLVQEYDRGXXXXXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLN 212
             P++ GGSNSF+++LL Q +D                    Y CCF+WVD S  +LY+YL 
Sbjct:   158 PIIAGGSNSFVHALLAQRFDP--KFDPFSSGSCLISSDLRYECCFIWVDVSETVLYEYLL 215

Query:   213 KRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVK 272
             +RVD+M++SGMFEEL+ F+D  +    + +    G+ KAIGVPEF+ YFK YPP    +K
Sbjct:   216 RRVDEMMDSGMFEELSRFYDPVK----SGLETRFGIRKAIGVPEFDGYFKEYPPEKKMIK 271

Query:   273 GEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRMLV---N 316
               WD +R+  Y +A             RQ+ KI  L+ AGW++ R+DAT +F+ ++   +
Sbjct:   272 --WDALRKAAYDKAVDDIKRNTWTLAKRQVKKIEMLKDAGWEIERVDATASFKAVMMKSS 329

Query:   317 GDQEWRCVWERQVVEPSVKIVKRFL 341
              +++WR  WE QV+EPSVKIVKR L
Sbjct:   330 SEKKWRENWEEQVLEPSVKIVKRHL 354

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IDA;TAS

GO:0009536 "plastid" evidence=IDA

GO:0052622 "ATP dimethylallyltransferase activity" evidence=IDA

GO:0052623 "ADP dimethylallyltransferase activity" evidence=IDA

GO:0080117 "secondary growth" evidence=IGI

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2094128 IPT8 "ATP/ADP isopentenyltransferases" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 150/327 (45%), Positives = 199/327 (60%)

Query:    28 PFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE 87
             P   P+ R    R  V  +T        S K K+VVIMGATG+GKS LSIDLATRF   E
Sbjct:    15 PITSPRLRLPPPRSVVPMTTV---CMEQSYKQKVVVIMGATGSGKSCLSIDLATRF-SGE 70

Query:    88 IINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDII 147
             I+NSDK+Q Y GL +TTN++   +R  VPHHLLGE  PDD E T  +FR  A  +IS+I 
Sbjct:    71 IVNSDKIQFYDGLKVTTNQMSILERCGVPHHLLGELPPDDSELTTSEFRSLASRSISEIT 130

Query:   148 SRKKTPLLVGGSNSFIYSLLVQEYDRGXXXXXXXXXXXXXXXXXXYNCCFLWVDSSLQLL 207
             +R   P++ GGSNSFI++LLV  +D                    Y CCFLWVD S+ +L
Sbjct:   131 ARGNLPIIAGGSNSFIHALLVDRFDP---KTYPFSSETSISSGLRYECCFLWVDVSVSVL 187

Query:   208 YDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA 267
             ++YL+KRVD M+ESGMFEELA F+D    R + S     G+ K IG+PEF+RYF +YPP 
Sbjct:   188 FEYLSKRVDQMMESGMFEELAGFYDP---RYSGSAIRAHGIHKTIGIPEFDRYFSLYPPE 244

Query:   268 SVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRML 314
               +   EWD  R+G Y EA             +QI++I+KL+ +GWD++RLDAT +F   
Sbjct:   245 RKQKMSEWDQARKGAYDEAVQEIKENTWRLAKKQIERIMKLKSSGWDIQRLDATPSF--- 301

Query:   315 VNGDQEWRCVWERQVVEPSVKIVKRFL 341
                 +  R +W+  V++ S+K+VKRFL
Sbjct:   302 ---GRSSREIWDNTVLDESIKVVKRFL 325

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2031205 IPT6 "isopentenyltransferase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 143/307 (46%), Positives = 192/307 (62%)

Query:    58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
             KDK+V+I G TGTGKS LS+DLATRFFP+EIINSDKMQ+YKG +I TN IP H++  VPH
Sbjct:    44 KDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIVTNLIPLHEQGGVPH 103

Query:   118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXXX 177
             HLLG+F P D E TP +FR  A  +IS +IS KK P++VGGSNSF ++LL + +D     
Sbjct:   104 HLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFNHALLAERFDPDIDP 163

Query:   178 XXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDS--DR 235
                            Y CC LWVD    +L+ +L  RVD M+ESG+ E+LAE +D   D 
Sbjct:   164 FSPGSSLSTICSDLRYKCCILWVDVLEPVLFQHLCNRVDQMIESGLVEQLAELYDPVVDS 223

Query:   236 MRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA--------- 286
              R        +G+ K IGV EF+RYF++YP   ++ KG WD  R+  Y+E          
Sbjct:   224 GRR-------LGVRKTIGVEEFDRYFRVYPK-EMD-KGIWDLARKAAYEETVKGMKERTC 274

Query:   287 ----RQIDKILKLERAGWDLRRLDATTAFRMLVN-----GD-QEWRCVWERQVVEPSVKI 336
                 +Q +KI+KL R GW+++RLDAT A    +N     G+ +  R +WE+ +V+ SV+I
Sbjct:   275 RLVKKQKEKIMKLIRGGWEIKRLDATAAIMAELNQSTAKGEGKNGREIWEKHIVDESVEI 334

Query:   337 VKRFLDE 343
             VK+FL E
Sbjct:   335 VKKFLLE 341

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2121979 IPT4 "isopentenyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 138/305 (45%), Positives = 186/305 (60%)

Query:    59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHH 118
             DK+VVIMGATG+GKS LS+DLA  F  +EIINSDKMQ Y GL ITTN+     R  VPHH
Sbjct:     5 DKMVVIMGATGSGKSSLSVDLALHF-KAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHH 63

Query:   119 LLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXXXX 178
             LLGE  P+  E T  +FR+ A  AIS+I  RKK P+L GGSNS+I++LL + YD      
Sbjct:    64 LLGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKSYDP--ENY 121

Query:   179 XXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRN 238
                           Y+CCF+W+D    +L++YL+ R+D M++SGMFEE+AEF      R+
Sbjct:   122 PFSDHKGSICSELKYDCCFIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFH-----RS 176

Query:   239 NNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA-R---------- 287
               +    +G+ KAIGV EF+ Y KMY   +   K  WDP+R+  Y++A R          
Sbjct:   177 KKAPKEPLGIWKAIGVQEFDDYLKMYKWDNDMDK--WDPMRKEAYEKAVRAIKENTFQLT 234

Query:   288 --QIDKILKLERAGWDLRRLDATTAFRMLVNGDQEW-------RCVWERQVVEPSVKIVK 338
               QI KI KL  AGWD++++DAT +FR  +   +E        R +W ++V+EP VKIV+
Sbjct:   235 KDQITKINKLRNAGWDIKKVDATASFREAIRAAKEGEGVAEMQRKIWNKEVLEPCVKIVR 294

Query:   339 RFLDE 343
               LD+
Sbjct:   295 SHLDQ 299

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IMP

GO:0009824 "AMP dimethylallyltransferase activity" evidence=ISS;IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=IDA

GO:0052623 "ADP dimethylallyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2179629 IPT5 "isopentenyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 108/275 (39%), Positives = 153/275 (55%)

Query:    53 PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR 112
             P   +KDK+V +MGATGTGKS L+IDLATRF P+EI+NSDK+QVYKGLDI TNK+   + 
Sbjct:    27 PFFRRKDKVVFVMGATGTGKSRLAIDLATRF-PAEIVNSDKIQVYKGLDIVTNKVTPEES 85

Query:   113 HNVPHHLLGEFVPDDVE-FTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY 171
               VPHHLLG  V D  E FT +DF+ +A  A+  I+ R + P++ GGSNS+I +L+    
Sbjct:    86 LGVPHHLLGT-VHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALVNDCV 144

Query:   172 DRGXXXXXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFF 231
             D                    YNCCFLWVD S  +L+ ++++RVD M++ G+ +E+   F
Sbjct:   145 D----------------FRLRYNCCFLWVDVSRPVLHSFVSERVDKMVDMGLVDEVRRIF 188

Query:   232 DSDRMRNNNSV--SLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA-RQ 288
             D      +  +  ++GV  L      E   Y        +E   E   ++      A RQ
Sbjct:   189 DPSSSDYSAGIRRAIGVPELDEFLRSEMRNYPAETTERLLETAIE--KIKENTCLLACRQ 246

Query:   289 IDKILKLERAG-WDLRRLDATTAF-RMLVNGDQEW 321
             + KI +L +   W++ R+DAT  F R     D+ W
Sbjct:   247 LQKIQRLYKQWKWNMHRVDATEVFLRRGEEADEAW 281

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008033 "tRNA processing" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2099177 IPT3 "isopentenyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 102/265 (38%), Positives = 156/265 (58%)

Query:    84 FPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAI 143
             F +EIINSDK+QV++GLDI TNKI S +   VPHHLLG  +P + + T  ++   A+ +I
Sbjct:    65 FRAEIINSDKIQVHQGLDIVTNKITSEESCGVPHHLLG-VLPPEADLTAANYCHMANLSI 123

Query:   144 SDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXXXXXXXXXXXXXXXXXXYNCCFLWVDSS 203
               +++R K P++VGGSNS++ +L+  + ++                   Y+CCFLWVD +
Sbjct:   124 ESVLNRGKLPIIVGGSNSYVEALVDDKENK---------------FRSRYDCCFLWVDVA 168

Query:   204 LQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKM 263
             L +L+ ++++RVD M+ESGM EE+ EFFD     +N+  S G+   KAIG PEF+R+F+ 
Sbjct:   169 LPVLHGFVSERVDKMVESGMVEEVREFFDF----SNSDYSRGIK--KAIGFPEFDRFFRN 222

Query:   264 YPPASVEVKGEW-----DPVRRGVYQEA-RQIDKILKLERAG-WDLRRLDATTAFRMLVN 316
                 +VE + E      + ++R  ++ A RQ +KI +L +   W ++R+DAT  F     
Sbjct:   223 EQFLNVEDREELLSKVLEEIKRNTFELACRQREKIERLRKVKKWSIQRVDATPVFTKR-R 281

Query:   317 GDQEWRCVWERQVVEPSVKIVKRFL 341
                +    WER V  PS   V RFL
Sbjct:   282 SKMDANVAWERLVAGPSTDTVSRFL 306

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0009536 "plastid" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2088025 IPT7 "isopentenyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 97/273 (35%), Positives = 147/273 (53%)

Query:    58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
             K+K++ +MGATG+GKS L+IDLATRF   EIINSDK+Q+YKGLD+ TNK+   +   VPH
Sbjct:    33 KEKVIFVMGATGSGKSRLAIDLATRF-QGEIINSDKIQLYKGLDVLTNKVTPKECRGVPH 91

Query:   118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXXX 177
             HLLG F  +    T   +   A  AIS + +  K P++ GGSNS+I +L+   +  G   
Sbjct:    92 HLLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALV--NHSSGFLL 149

Query:   178 XXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMR 237
                            Y+CCF+WVD SL +L  +++KRVD M+E+G+ EE+ E F+  +  
Sbjct:   150 NN-------------YDCCFIWVDVSLPVLNSFVSKRVDRMMEAGLLEEVREVFNP-KAN 195

Query:   238 NNNSVSLGVGL------LKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDK 291
              +  +   +G+      L+   + +     KM   A   +K   + +        RQ+ K
Sbjct:   196 YSVGIRRAIGVPELHEYLRNESLVDRATKSKMLDVAVKNIKKNTEILA------CRQLKK 249

Query:   292 ILKLERAG-WDLRRLDATTAF--RMLVNGDQEW 321
             I +L +     + R+DAT  F  R +   D+ W
Sbjct:   250 IQRLHKKWKMSMHRVDATEVFLKRNVEEQDEAW 282

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009824 "AMP dimethylallyltransferase activity" evidence=IMP

GO:0052622 "ATP dimethylallyltransferase activity" evidence=ISS

GO:0052623 "ADP dimethylallyltransferase activity" evidence=ISS

GO:0009691 "cytokinin biosynthetic process" evidence=IGI;RCA;TAS

GO:0009860 "pollen tube growth" evidence=IEP

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

UNIPROTKB|Q9H3H1 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 51/107 (47%), Positives = 71/107 (66%)

Query:    61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
             LVVI+GATGTGKS L++ L  R    EI+++D MQVY+GLDI TNK+ + ++    HH++
Sbjct:    25 LVVILGATGTGKSTLALQLGQRL-GGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMI 83

Query:   121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
                 P    +T  DFR +A   I DI +R K P++VGG+N +I SLL
Sbjct:    84 SFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIESLL 130

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=TAS

GO:0008033 "tRNA processing" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914216 Trit1 "tRNA isopentenyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
 Identities = 51/107 (47%), Positives = 71/107 (66%)

Query:    61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
             LVVI+GATGTGKS L++ L  R    EI+++D MQVY+GLDI TNK+ + ++    HH++
Sbjct:    25 LVVILGATGTGKSTLALQLGQRL-GGEIVSADSMQVYEGLDIITNKVSAQEQKMCQHHMI 83

Query:   121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
                 P    +T  DFR +A   I DI +R K P++VGG+N +I SLL
Sbjct:    84 SFVDPLVTSYTVVDFRNKATALIEDIFARDKIPIVVGGTNYYIESLL 130

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052381 "tRNA dimethylallyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94ID3	IPT1_ARATH	2, ., 5, ., 1, ., n, 4	0.4830	0.8629	0.8291	yes	no
Q5GHF7	IPT_HUMLU	2, ., 5, ., 1, ., n, 4	0.5816	0.8250	0.8601	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.75	LOW CONFIDENCE prediction!
4th Layer	2.5.1.n4	0.914
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.574.1	cytokinin biosynthetic isopentenyltransferase (303 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CYP735A6	cytochrome P450 (518 aa)						•			0.899
	CYP735A5	cytochrome P450 (516 aa)						•			0.899
	GA20ox7	gibberellin 20-oxidase (EC-1.14.11.12) (372 aa)							•		0.510
	GA20ox5	gibberellin 20-oxidase (EC-1.14.11.12) (378 aa)							•		0.510
	GA20ox2-1	gibberellin 20-oxidase (EC-1.14.11.12) (366 aa)							•		0.510
	GA20ox6	gibberellin 20-oxidase (EC-1.14.11.12) (385 aa)							•		0.510
	GA20ox4	gibberellin 20-oxidase (EC-1.14.11.12) (341 aa)							•		0.510
	eugene3.00140701	response regulator (144 aa)							•		0.510
	GA20ox3	gibberellin 20-oxidase (EC-1.14.11.12) (361 aa)							•		0.510
	GA20ox2-2	gibberellin 20-oxidase (EC-1.14.11.12) (379 aa)							•		0.510

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
PLN02165	334	PLN02165, PLN02165, adenylate isopentenyltransfera	1e-147
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	3e-38
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	2e-36
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	9e-36
TIGR00174	287	TIGR00174, miaA, tRNA dimethylallyltransferase	2e-35
pfam01715	253	pfam01715, IPPT, IPP transferase	1e-22
PLN02840	421	PLN02840, PLN02840, tRNA dimethylallyltransferase	5e-20
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	3e-18
PRK14729	300	PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosp	3e-12

>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase

 Score =  418 bits (1076), Expect = e-147
 Identities = 177/342 (51%), Positives = 225/342 (65%), Gaps = 27/342 (7%)

Query: 19  QQHYSSFYSPFLHP-KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI 77
           Q     F SP L P    R +        T  + A   + KDK+VVIMGATG+GKS LS+
Sbjct: 2   QNLKFLFVSPPLLPITIPRRKLPPPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRLSV 61

Query: 78  DLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL 137
           DLATRF PSEIINSDKMQVY GL ITTN+I    R  VPHHLLGE  PDD E T  +FR 
Sbjct: 62  DLATRF-PSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS 120

Query: 138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF 197
            A  +IS+I SR+K P++ GGSNSFI++LL   +D  +  F     S  +SS LRY+CCF
Sbjct: 121 LASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSS--GSSLISSDLRYDCCF 178

Query: 198 LWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEF 257
           +WVD S  +L++YL+KRVD+M++SGMFEELAEF+D        S S  +G+ KAIGVPEF
Sbjct: 179 IWVDVSEPVLFEYLSKRVDEMMDSGMFEELAEFYDP-----VKSGSEPLGIRKAIGVPEF 233

Query: 258 ERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQIDKILKLERAGWDLRR 304
           +RYFK YPP +    G+WD  R+  Y+EA             RQI+KI+KL+ AGWD++R
Sbjct: 234 DRYFKKYPPEN--KMGKWDQARKAAYEEAVREIKENTCQLAKRQIEKIMKLKSAGWDIKR 291

Query: 305 LDATTAFRMLVNGDQE---WRCVWERQVVEPSVKIVKRFLDE 343
           +DAT +FR ++    +   WR +WE+ V+EPSVKIVKRFL E
Sbjct: 292 VDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVE 333

Length = 334

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score =  137 bits (349), Expect = 3e-38
 Identities = 72/262 (27%), Positives = 113/262 (43%), Gaps = 67/262 (25%)

Query: 56  SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNV 115
             K K++VI+G T +GK+ L+I+LA R    EII++D MQVY+G+DI T K  + +R  V
Sbjct: 1   MMKPKVIVIVGPTASGKTALAIELAKRL-NGEIISADSMQVYRGMDIGTAKPTAEERAGV 59

Query: 116 PHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS---------------- 159
           PHHL+   +     ++  DF+  A  AI+DI++R K P+LVGG+                
Sbjct: 60  PHHLID-ILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPP 118

Query: 160 -----------------NSFIYSLLVQEYD----------------RGLSVFDDRFDSDS 186
                               +++ L  E D                R L V+        
Sbjct: 119 ADPELRAELEALAAEEGWEALHAEL-AEIDPEAAARIHPNDPQRIIRALEVY--ELTGKP 175

Query: 187 VSSS------LRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNN 240
           +S          Y    + +D   + LY+ +N+RVD MLE G+ EE+        + +  
Sbjct: 176 LSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLPDLP 235

Query: 241 SVSLGVGLLKAIGVPEFERYFK 262
           +       ++AIG  E   Y  
Sbjct: 236 A-------MRAIGYKELLAYLD 250

Length = 307

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score =  133 bits (336), Expect = 2e-36
 Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 67/262 (25%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           KK KL+VI G T +GK+ L+I LA R    EII+ D MQVY+GLDI T K    +   VP
Sbjct: 1   KKPKLIVIAGPTASGKTALAIALAKRL-GGEIISLDSMQVYRGLDIGTAKPSLEELAGVP 59

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS----NSFIYSL------ 166
           HHL+         ++  +F+  A  AI DI++R K P+LVGG+     + +  L      
Sbjct: 60  HHLID-IRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEA 118

Query: 167 ----------------------LVQEYD----------------RGLSVFDDRFDSDSVS 188
                                  +++ D                R L V+        +S
Sbjct: 119 DPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRIIRALEVY--YLTGKPIS 176

Query: 189 SSL--------RYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNN 240
                       Y+   + + +  ++LY+ +N+RVD MLE G+ EE+   +         
Sbjct: 177 ELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYA-------R 229

Query: 241 SVSLGVGLLKAIGVPEFERYFK 262
            + L +  ++AIG  E   Y  
Sbjct: 230 GLHLDLPAMQAIGYKEILAYLD 251

Length = 308

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score =  134 bits (339), Expect = 9e-36
 Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 53  PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR 112
           P    K K+VV+MG TG+GKS L++DLA+ F P EIIN+D MQVY GLD+ TNK+P H++
Sbjct: 16  PKQKGKAKVVVVMGPTGSGKSKLAVDLASHF-PVEIINADSMQVYSGLDVLTNKVPLHEQ 74

Query: 113 HNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
             VPHHLLG   P  VEFT  DFR  A   I +I+SR   P++VGG+N +I +L+
Sbjct: 75  KGVPHHLLGVISP-SVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALV 128

Length = 468

>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase

 Score =  129 bits (327), Expect = 2e-35
 Identities = 75/254 (29%), Positives = 111/254 (43%), Gaps = 62/254 (24%)

Query: 61  LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
           ++ +MG T +GKS LSI LA +   +EII+ D MQ+YKG+DI T K    +R  +PHHL+
Sbjct: 1   VIFLMGPTASGKSQLSIQLAQKL-NAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLI 59

Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSN-------------------- 160
               P +  ++  DF+ QA NAI+DI +R K PLLVGG+                     
Sbjct: 60  DILDPSE-SYSAADFQTQALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLI 118

Query: 161 -------------SFIYSLL---------------VQEYDRGLSVFDDRFDSDSV----- 187
                         F+Y+ L                +   R L VF       S      
Sbjct: 119 REQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKEQ 178

Query: 188 SSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVG 247
              L Y+   + + SS + L+  + +RV DMLESG+  E+   +    + +         
Sbjct: 179 KIELFYDIVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDLCDL-------P 231

Query: 248 LLKAIGVPEFERYF 261
            ++AIG  EF  Y 
Sbjct: 232 SIQAIGYKEFLLYL 245

Alternate names include delta(2)-isopentenylpyrophosphate transferase, IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA modification enzyme. Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Understanding of substrate specificity has changed [Protein synthesis, tRNA and rRNA base modification]. Length = 287

>gnl|CDD|216659 pfam01715, IPPT, IPP transferase

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 61/222 (27%)

Query: 94  MQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTP 153
           MQVYKG+DI T K    +R  VPHHL+   +     ++  +F+  A  AI++I +R K P
Sbjct: 1   MQVYKGMDIGTAKPSLEERKGVPHHLID-ILDPTESYSAAEFQRDALEAIAEIRARGKIP 59

Query: 154 LLVGGS---------------------------------NSFIYSLLV------------ 168
           LLVGG+                                 N ++++ L             
Sbjct: 60  LLVGGTGLYFKALLDGLSDTPSADPKVRAKLEEQLEELGNDYLHAELASVDPEAAAKIHP 119

Query: 169 ---QEYDRGLSVFDDRFDSDS-----VSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLE 220
              +   R L VF       S       ++L Y+   + +    ++L++ + +RVDDMLE
Sbjct: 120 NDGRRIVRALEVFYATGKPISEFQKEQKNALPYDIVQIGLARDREVLHERIARRVDDMLE 179

Query: 221 SGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFK 262
           SG+ EE+   +     +  N     +  ++AIG  EF  Y  
Sbjct: 180 SGLVEEVKALYA----QGLNE---DLPAIRAIGYKEFLLYLD 214

This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37). Length = 253

>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase

 Score = 89.9 bits (223), Expect = 5e-20
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 46  STSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN 105
           +       + +KK+K++VI G TG GKS L+++LA R    EII++D +QVY+GLD+ + 
Sbjct: 8   TALSGSGASKTKKEKVIVISGPTGAGKSRLALELAKRL-NGEIISADSVQVYRGLDVGSA 66

Query: 106 KIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS 159
           K    +R  VPHHL+    P D +++   F   A  A  DI++R + P++ GG+
Sbjct: 67  KPSLSERKEVPHHLIDILHPSD-DYSVGAFFDDARRATQDILNRGRVPIVAGGT 119

Length = 421

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 47/187 (25%)

Query: 189 SSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGL 248
           S+ R++CCF+ VD+   +L  Y+N+RVD M+++G+ +E+ + +D              GL
Sbjct: 222 SNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLDEVYDIYDPGADYTR-------GL 274

Query: 249 LKAIGVPEFERYFKMYPP--ASVEVKGEWDPVR------------------RGVYQEA-- 286
            +AIGV EFE + ++Y     + E+    +  +                  + +  EA  
Sbjct: 275 RQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAID 334

Query: 287 -----------RQIDKILKLERA-GWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSV 334
                      RQ  ++ +L    GW++  +DAT A  +  + +      W  +VV+P+V
Sbjct: 335 QVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAI-LCKSEES-----WNAKVVKPAV 388

Query: 335 KIVKRFL 341
           +IV+RFL
Sbjct: 389 EIVRRFL 395

Length = 468

>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFP---SEIINSDKMQVYKGLDITTNKIPSHKRH 113
           K++K+V I G T  GKS +        FP   +EIIN D +QVYK  DI + K     R 
Sbjct: 2   KENKIVFIFGPTAVGKSNILFH-----FPKGKAEIINVDSIQVYKEFDIASCKPSKELRK 56

Query: 114 NVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS 159
           ++ HHL+ +F+    E+    F  +A   I ++  +KK P+ VGGS
Sbjct: 57  HIKHHLV-DFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGS 101

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
PLN02748	468	tRNA dimethylallyltransferase	100.0
PLN02165	334	adenylate isopentenyltransferase	100.0
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	100.0
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	100.0
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	100.0
PLN02840	421	tRNA dimethylallyltransferase	100.0
PF01715	253	IPPT: IPP transferase; InterPro: IPR002627 tRNA is	100.0
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	99.92
PRK00300	205	gmk guanylate kinase; Provisional	99.26
PRK14737	186	gmk guanylate kinase; Provisional	99.24
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.22
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.2
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.05
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.04
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.02
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.0
PRK14738	206	gmk guanylate kinase; Provisional	98.98
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.97
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.96
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.96
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.92
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.91
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.91
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.89
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.87
COG4987	573	CydC ABC-type transport system involved in cytochr	98.86
PRK05057	172	aroK shikimate kinase I; Reviewed	98.85
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.83
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.8
PLN02772	398	guanylate kinase	98.8
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.78
PRK00131	175	aroK shikimate kinase; Reviewed	98.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.76
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.76
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.75
PRK13946	184	shikimate kinase; Provisional	98.75
PTZ00243	1560	ABC transporter; Provisional	98.74
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.74
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.74
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.73
PRK13948	182	shikimate kinase; Provisional	98.72
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.72
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.72
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.72
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.72
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.72
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.71
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.71
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.71
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.7
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.7
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.7
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.7
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.7
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.7
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.7
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.7
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.69
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.69
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.69
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.69
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.68
PLN03130	1622	ABC transporter C family member; Provisional	98.68
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.68
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.67
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.67
PLN03232	1495	ABC transporter C family member; Provisional	98.67
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.67
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.67
cd03246	173	ABCC_Protease_Secretion This family represents the	98.67
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.67
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.66
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.66
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.66
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.66
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.66
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.66
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.66
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.66
PRK09825	176	idnK D-gluconate kinase; Provisional	98.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.65
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.65
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.65
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.65
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.65
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.65
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.64
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.64
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.64
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.64
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.64
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.64
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.63
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.63
PRK10908	222	cell division protein FtsE; Provisional	98.63
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.63
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.63
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.63
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.62
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.62
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.62
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.62
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.62
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.62
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.61
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.61
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.61
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.61
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.6
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.6
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.6
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.6
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.6
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.6
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.6
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.6
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.6
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.6
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.6
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.6
PRK06217	183	hypothetical protein; Validated	98.6
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.6
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.6
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.59
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.59
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.59
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.59
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.59
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.58
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.58
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.58
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.57
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.57
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.57
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.57
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.57
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.57
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.57
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.57
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.57
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.57
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.57
PRK13949	169	shikimate kinase; Provisional	98.57
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.57
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.57
PRK00625	173	shikimate kinase; Provisional	98.57
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.57
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.56
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.56
COG4559	259	ABC-type hemin transport system, ATPase component	98.56
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.56
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.56
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.56
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.55
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.55
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.55
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.55
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.55
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.54
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.54
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK13947	171	shikimate kinase; Provisional	98.54
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.54
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.54
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.54
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.53
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.53
PRK11545	163	gntK gluconate kinase 1; Provisional	98.53
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.53
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.53
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.53
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.53
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.53
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.53
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.53
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.53
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.53
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.52
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.52
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.52
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.52
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.52
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.52
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.51
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.51
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.51
PRK07261	171	topology modulation protein; Provisional	98.51
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.51
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.51
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.51
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.5
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.5
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.5
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.5
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.5
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.5
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.5
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.5
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.49
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.49
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.49
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.49
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.49
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.49
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.49
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.49
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.49
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.49
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.49
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.49
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.49
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.48
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.48
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.47
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.47
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.47
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.47
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.47
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.47
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.47
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.47
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.47
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.47
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.46
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.46
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.46
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.46
PLN02199	303	shikimate kinase	98.46
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.46
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.45
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.45
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.45
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.44
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.44
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.44
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.44
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.44
PRK05541	176	adenylylsulfate kinase; Provisional	98.44
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.44
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.43
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.43
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.43
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.43
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.43
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.43
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.43
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.42
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.42
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.42
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.42
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.41
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.41
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.41
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.41
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK10938	490	putative molybdenum transport ATP-binding protein	98.4
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK06762	166	hypothetical protein; Provisional	98.38
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.37
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.37
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.37
COG4988	559	CydD ABC-type transport system involved in cytochr	98.37
PRK06547	172	hypothetical protein; Provisional	98.36
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.36
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.36
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.35
PRK03731	171	aroL shikimate kinase II; Reviewed	98.35
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.34
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.34
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.34
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.34
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.34
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.34
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.34
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.33
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.32
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.32
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.32
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.32
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.32
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.31
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.31
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.31
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.3
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.3
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.3
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.29
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.29
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.29
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.29
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.28
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.28
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.28
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.28
PRK08233	182	hypothetical protein; Provisional	98.28
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.28
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.27
COG0488	530	Uup ATPase components of ABC transporters with dup	98.27
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.27
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.27
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.26
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.26
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.26
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.26
PRK08118	167	topology modulation protein; Reviewed	98.25
PHA02530	300	pseT polynucleotide kinase; Provisional	98.24
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.24
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.24
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.24
PRK14530	215	adenylate kinase; Provisional	98.23
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.23
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.22
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.22
PLN03073	718	ABC transporter F family; Provisional	98.22
PRK10938	490	putative molybdenum transport ATP-binding protein	98.22
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.22
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.22
PRK03839	180	putative kinase; Provisional	98.21
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.21
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.21
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.21
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.19
PRK14527	191	adenylate kinase; Provisional	98.19
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.19
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.19
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.18
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.18
COG1123	539	ATPase components of various ABC-type transport sy	98.17
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.17
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.17
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.16
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.16
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.16
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.16
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.15
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.15
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.15
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.14
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.14
PRK11147	635	ABC transporter ATPase component; Reviewed	98.14
PRK11147	635	ABC transporter ATPase component; Reviewed	98.13
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.12
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.12
PRK08356	195	hypothetical protein; Provisional	98.12
PLN03130	1622	ABC transporter C family member; Provisional	98.12
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.11
PRK04182	180	cytidylate kinase; Provisional	98.11
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.11
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.11
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.11
PLN03232	1495	ABC transporter C family member; Provisional	98.1
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.1
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.09
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.09
PRK12338	319	hypothetical protein; Provisional	98.08
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.08
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.07
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.07
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.07
PRK05480	209	uridine/cytidine kinase; Provisional	98.06
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.05
COG0488	530	Uup ATPase components of ABC transporters with dup	98.04
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.04
PLN02200	234	adenylate kinase family protein	98.03
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.01
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.01
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.01
COG1123	539	ATPase components of various ABC-type transport sy	98.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.0
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.99
PRK01184	184	hypothetical protein; Provisional	97.99
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.99
PLN03073	718	ABC transporter F family; Provisional	97.99
PRK14532	188	adenylate kinase; Provisional	97.98
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.98
PRK14531	183	adenylate kinase; Provisional	97.97
PTZ00088	229	adenylate kinase 1; Provisional	97.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	97.95
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.95
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.94
PRK00889	175	adenylylsulfate kinase; Provisional	97.93
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.93
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.92
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.92
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.92
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.91
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.91
PRK06696	223	uridine kinase; Validated	97.91
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.91
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.91
PRK00023	225	cmk cytidylate kinase; Provisional	97.89
COG4181	228	Predicted ABC-type transport system involved in ly	97.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.88
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.88
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.86
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.85
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.85
PRK03846	198	adenylylsulfate kinase; Provisional	97.85
PRK13409	590	putative ATPase RIL; Provisional	97.84
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.84
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.83
PRK13808	333	adenylate kinase; Provisional	97.83
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.81
PLN03211	659	ABC transporter G-25; Provisional	97.81
PRK00698	205	tmk thymidylate kinase; Validated	97.81
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.81
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	97.81
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.78
PRK14528	186	adenylate kinase; Provisional	97.76
PTZ00301	210	uridine kinase; Provisional	97.76
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.75
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.74
PLN02348	395	phosphoribulokinase	97.74
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.73
PRK13409	590	putative ATPase RIL; Provisional	97.73
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.73
PRK02496	184	adk adenylate kinase; Provisional	97.73
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.72
PLN03140	1470	ABC transporter G family member; Provisional	97.72
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.72
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.72
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.71
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.69
TIGR00767	415	rho transcription termination factor Rho. Members	97.68
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.67
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.66
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.64
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.63
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.63
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.63
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.63
COG3709	192	Uncharacterized component of phosphonate metabolis	97.63
PRK00279	215	adk adenylate kinase; Reviewed	97.62
PRK07429	327	phosphoribulokinase; Provisional	97.61
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	97.61
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.6
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.6
COG4172	534	ABC-type uncharacterized transport system, duplica	97.59
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.55
PLN02318	656	phosphoribulokinase/uridine kinase	97.54
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.53
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.53
COG4178	604	ABC-type uncharacterized transport system, permeas	97.52
PRK14526	211	adenylate kinase; Provisional	97.52
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.51
PLN03140	1470	ABC transporter G family member; Provisional	97.51
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.5
KOG0054	1381	consensus Multidrug resistance-associated protein/	97.49
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	97.49
PRK07667	193	uridine kinase; Provisional	97.47
COG4172	534	ABC-type uncharacterized transport system, duplica	97.47
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.47
smart00382	148	AAA ATPases associated with a variety of cellular	97.46
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.45
PLN02459	261	probable adenylate kinase	97.43
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.39
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.38
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	97.37
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.36
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.36

>PLN02748 tRNA dimethylallyltransferase

Probab=100.00  E-value=5.7e-64  Score=504.06  Aligned_cols=270  Identities=40%  Similarity=0.696  Sum_probs=227.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      +++++|+|+||||||||+|+..||+.++ ++|||+|+||||+||||+|+||+.+|+.+|||||+++++|++ .|++.+|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~-~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~   97 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFP-VEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFR   97 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcC-eeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHH
Confidence            6678999999999999999999999999 999999999999999999999999999999999999999999 99999999


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------------------C
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------------------D  172 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------------------d  172 (343)
                      ++|..+|++|+++|++||||||||||++||+++..                                            |
T Consensus        98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~vD  177 (468)
T PLN02748         98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKELD  177 (468)
T ss_pred             HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhhC
Confidence            99999999999999999999999999999998642                                            1


Q ss_pred             cccc----------------cccccCCCccccc--------------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhcc
Q 019312          173 RGLS----------------VFDDRFDSDSVSS--------------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESG  222 (343)
Q Consensus       173 p~~~----------------~~~~~~~~~~~~~--------------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~G  222 (343)
                      |..+                +|..+  +++++.              .++|++++|||++++++|++||++||+.|+++|
T Consensus       178 P~~A~rihpnD~rRI~RALEI~~~T--G~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~G  255 (468)
T PLN02748        178 PVAANRIHPNNHRKINRYLELYATT--GVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAG  255 (468)
T ss_pred             HHHHhhcCCccHHHHHHHHHHHHHH--CcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCC
Confidence            1110                11111  122211              246889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCC--------------------------ccC--cCC
Q 019312          223 MFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPAS--------------------------VEV--KGE  274 (343)
Q Consensus       223 lleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~--------------------------~~~--~~~  274 (343)
                      |++||+.|++.+..       .+.+++|+||||||++||+.+....                          ++.  +..
T Consensus       256 lleEv~~l~~~~~~-------~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (468)
T PLN02748        256 LLDEVYDIYDPGAD-------YTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKIL  328 (468)
T ss_pred             HHHHHHHHHhcCCC-------CCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhh
Confidence            99999999986432       2567899999999999998433211                          000  135


Q ss_pred             hHHHHHHHHHHHHHHHHHH--hhhh----CCCCeeEecchhhHHHhhcCCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312          275 WDPVRRGVYQEARQIDKIL--KLER----AGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFLDE  343 (343)
Q Consensus       275 ~d~~~~~~~~~tRQ~ak~q--~l~~----~gw~i~~ld~t~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~  343 (343)
                      ++++++.+..+||||||+|  |+++    .+|++||+|+|+++.      +++.+.|++.|++||++||++||++
T Consensus       329 l~eaie~ik~~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~------~~~~~~W~~~V~~pa~~iv~~fL~~  397 (468)
T PLN02748        329 LDEAIDQVKLNTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAIL------CKSEESWNAKVVKPAVEIVRRFLSD  397 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCeeEeechhhhh------hccHhHHHHHhHHHHHHHHHHHHcC
Confidence            7888999999999999988  4554    258999999999863      3456999999999999999999974

>PLN02165 adenylate isopentenyltransferase

Probab=100.00  E-value=1.5e-62  Score=474.32  Aligned_cols=278  Identities=56%  Similarity=0.954  Sum_probs=238.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++++++|+||||||||+|+..||+.++ .+|||+|++|+|+|+||+|+||+.+++.+++||+++.+++.+..|++.+|.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~-~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFP-SEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcC-CceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            5678999999999999999999999999 899999999999999999999999999999999999999986579999999


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcc-cccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDS-VSSSLRYNCCFLWVDSSLQLLYDYLNKRV  215 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~-~~~~~~~~~~~i~L~~~re~L~~RI~~Rv  215 (343)
                      +++...|++|+++|++||+|||||||++||+++..||+.+.+..   +++ ++...+|+++++||++++++|++||++||
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~t---g~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv  196 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSS---GSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV  196 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhc---CCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988998765422   234 44335688899999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccC------cCChHHHHHHHHHHHHHH
Q 019312          216 DDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEV------KGEWDPVRRGVYQEARQI  289 (343)
Q Consensus       216 ~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~------~~~~d~~~~~~~~~tRQ~  289 (343)
                      ++|+++||+|||+.|++.++.   ..  .+.+++|+||||||++||++.+.....+      +..++++++++..+||||
T Consensus       197 d~Ml~~GlldEv~~L~~~~~~---~~--~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~ik~~TrqY  271 (334)
T PLN02165        197 DEMMDSGMFEELAEFYDPVKS---GS--EPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREIKENTCQL  271 (334)
T ss_pred             HHHHHCCHHHHHHHHHHccCC---cc--cCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999987553   11  2468999999999999998433211001      124889999999999999


Q ss_pred             HHHH--hhhh---CCCCeeEecchhhHHHhhc---CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312          290 DKIL--KLER---AGWDLRRLDATTAFRMLVN---GDQEWRCVWERQVVEPSVKIVKRFLDE  343 (343)
Q Consensus       290 ak~q--~l~~---~gw~i~~ld~t~~~~~~~~---~~~~~~~~W~~~V~~pa~~iv~~fl~~  343 (343)
                      ||+|  |+++   ..|+++|+|+||+++..+-   ++..+.+.|++.|++||++|+++||.+
T Consensus       272 AKRQ~TWfR~~~~~~~~~~~lD~t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~  333 (334)
T PLN02165        272 AKRQIEKIMKLKSAGWDIKRVDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVE  333 (334)
T ss_pred             HHHHHHHhcCCcccCCcEEEEechhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcC
Confidence            9988  5665   2589999999999764332   345677999999999999999999975

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=100.00  E-value=2.4e-58  Score=441.23  Aligned_cols=231  Identities=23%  Similarity=0.292  Sum_probs=198.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      +++|+|+||||||||.||..||+. + +||||+||+|||+||||+|+||+.+|+.+|+|||+|+++|++ .||+++|.++
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e-~~sv~~f~~~   80 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-K-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK-EYNLGIFYKE   80 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-C-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCC-ceeHHHHHHH
Confidence            469999999999999999999999 5 799999999999999999999999999999999999999999 9999999999


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc----------
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS----------  176 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~----------  176 (343)
                      |.++|++|+++|++||||||||||++||++|..                                ||..+          
T Consensus        81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~R  160 (300)
T PRK14729         81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYR  160 (300)
T ss_pred             HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHH
Confidence            999999999999999999999999999998742                                22211          


Q ss_pred             ------cccccCCCccccc-----ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccc
Q 019312          177 ------VFDDRFDSDSVSS-----SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLG  245 (343)
Q Consensus       177 ------~~~~~~~~~~~~~-----~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~  245 (343)
                            ++..+  +++++.     ..+|++++++|++|+++|++||++||+.|+++||+|||+.|++.++.       .+
T Consensus       161 i~RALEv~~~t--G~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~~-------~~  231 (300)
T PRK14729        161 IKRSLEVYYQT--GIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGYN-------EN  231 (300)
T ss_pred             HHHHHHHHHHh--CCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCC-------CC
Confidence                  11111  233332     12478888999999999999999999999999999999999987553       36


Q ss_pred             cchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312          246 VGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT  309 (343)
Q Consensus       246 ~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~  309 (343)
                      .+++|+|||||+++||..       +..+++++.+.+..+||||||||  |+++. ..++|+|..+
T Consensus       232 ~~~~~aIGYkE~~~yl~~-------g~~~l~e~~e~i~~~Tr~yAKRQ~TWfr~~-~~~~w~~~~~  289 (300)
T PRK14729        232 TPAFKGIGYREFLLWKSR-------PCYMLNDIINLIVKNSFLYVKRQMTFFAKI-PNVLWFHPDD  289 (300)
T ss_pred             CCcceeEcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCeeecCCC
Confidence            889999999999999942       24568999999999999999988  56643 4588998643

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.7e-58  Score=434.45  Aligned_cols=275  Identities=50%  Similarity=0.825  Sum_probs=236.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +.++++|+|+||||||.|+..||..|+ +||||+|+||+|+|++|+|+|++.+|+.||||||++.++++. +|++.+|..
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~-~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~-e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFP-GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEA-EYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCC-ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHh-hccHHHHHH
Confidence            568999999999999999999999999 999999999999999999999999999999999999999999 999999999


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD  217 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~  217 (343)
                      +|.++|++|+++|++||++|||++|++||+.+.+||..+++..+.  ..+++.++|+||++|++++.++|++|+++|||+
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~--g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~  161 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNT--GSIPSELRYDCCFLWLDADQAVLFERLDKRVDD  161 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccC--CCCCcccccceEEEEEecchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887776542  345556799999999999999999999999999


Q ss_pred             HHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCc---cC-cCChHHHHHHHHHHHHHHHHHH
Q 019312          218 MLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASV---EV-KGEWDPVRRGVYQEARQIDKIL  293 (343)
Q Consensus       218 Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~---~~-~~~~d~~~~~~~~~tRQ~ak~q  293 (343)
                      ||++||+||++++++....    +  +..++.++||++|++.|++-++...+   .. ...++++++++.+.|+||||+|
T Consensus       162 Ml~~Gl~eE~~~f~~~~~s----~--~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ  235 (348)
T KOG1384|consen  162 MLESGLLEELRDFYDPYNS----S--YRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQ  235 (348)
T ss_pred             HHHcchHHHHHHHhhhhhc----C--ccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987443    1  35668899999999999986553222   00 1125667777777777777665


Q ss_pred             -----hhhhCC-CCeeEecchhhHHHhhcCC----chhhhhhhhHhhhHHHHHHHHHhc
Q 019312          294 -----KLERAG-WDLRRLDATTAFRMLVNGD----QEWRCVWERQVVEPSVKIVKRFLD  342 (343)
Q Consensus       294 -----~l~~~g-w~i~~ld~t~~~~~~~~~~----~~~~~~W~~~V~~pa~~iv~~fl~  342 (343)
                           ++...+ |+++.+|+|+++.......    ..+...|+..|..|+.+|+++||.
T Consensus       236 ~~~I~~l~~~~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~  294 (348)
T KOG1384|consen  236 KRKIEKLFLPRKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLD  294 (348)
T ss_pred             HHHHHHhhcCCCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHH
Confidence                 344434 9999999999987543322    366899999999999999999985

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.1e-57  Score=429.83  Aligned_cols=232  Identities=32%  Similarity=0.495  Sum_probs=203.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      +++++|+||||||||.|+..||+.++ +||||.||||||+||||+|+||+.+|+.++||||+|+++|.+ .||+.+|.++
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~-~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~   80 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLG-GEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD   80 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcC-CcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence            57999999999999999999999999 999999999999999999999999999999999999999999 9999999999


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc----------
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS----------  176 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~----------  176 (343)
                      |.+.|++|.++||+||||||||||++||+.|..                                ||.++          
T Consensus        81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~R  160 (308)
T COG0324          81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQR  160 (308)
T ss_pred             HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhH
Confidence            999999999999999999999999999998742                                33211          


Q ss_pred             ------cccccCCCccccc-------c-cCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCC
Q 019312          177 ------VFDDRFDSDSVSS-------S-LRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSV  242 (343)
Q Consensus       177 ------~~~~~~~~~~~~~-------~-~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~  242 (343)
                            ++..+  ++++++       . .+|++.+++|.++++.|++||+.|+|.|+++||++||+.|+++++.      
T Consensus       161 i~RALEv~~~t--Gk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~------  232 (308)
T COG0324         161 IIRALEVYYLT--GKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLH------  232 (308)
T ss_pred             HHHHHHHHHHH--CCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCC------
Confidence                  12212  244432       1 2788999999999999999999999999999999999999998753      


Q ss_pred             ccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchhh
Q 019312          243 SLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATTA  310 (343)
Q Consensus       243 ~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~~  310 (343)
                       .+++++|+|||||+++||++        ..+++++.+.+..+||||||||  |+++ ...++|+|....
T Consensus       233 -~~~~~~~~iGy~e~~~yl~g--------~~~~~ea~~~~~~~TRqyAKRQ~TWfr~-~~~~~w~~~~~~  292 (308)
T COG0324         233 -LDLPAMQAIGYKEILAYLDG--------GISLEEAIERIKTATRQYAKRQLTWFRN-QLGVHWLDSESP  292 (308)
T ss_pred             -ccchHHHhcCHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcc-CcccceeccCCc
Confidence             37899999999999999984        4568999999999999999998  5664 224889987644

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=100.00  E-value=2.9e-55  Score=417.90  Aligned_cols=229  Identities=34%  Similarity=0.508  Sum_probs=199.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD  140 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~  140 (343)
                      +|+|+||||||||+|+..|++.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++.+++.+ .|++++|..++.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~-~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~   78 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLN-AEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLAL   78 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCC-CcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHH
Confidence            479999999999999999999998 999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc------------
Q 019312          141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS------------  176 (343)
Q Consensus       141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~------------  176 (343)
                      +.|++++++|++||||||||||++||++|..                                ||..+            
T Consensus        79 ~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~  158 (287)
T TIGR00174        79 NAIADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQ  158 (287)
T ss_pred             HHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHH
Confidence            9999999999999999999999999998743                                22211            


Q ss_pred             ----cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccc
Q 019312          177 ----VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLG  245 (343)
Q Consensus       177 ----~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~  245 (343)
                          ++..  ++++++.       .++|++++|||++|+++|++||++||+.|+++||+|||+.|++.+..       .+
T Consensus       159 RALEi~~~--tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~~-------~~  229 (287)
T TIGR00174       159 RALEVFYA--TGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDL-------CD  229 (287)
T ss_pred             HHHHHHHH--HCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCC-------cC
Confidence                1111  1233321       23588889999999999999999999999999999999999987542       26


Q ss_pred             cchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312          246 VGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT  309 (343)
Q Consensus       246 ~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~  309 (343)
                      .+++|+|||||+++||++        +.+++++.+.+..+||||||+|  |+++. .+++|+|+++
T Consensus       230 ~~~~~aIGYkE~~~~l~g--------~~~~~e~ie~i~~~Tr~yAKRQ~TWfR~~-~~~~~~~~~~  286 (287)
T TIGR00174       230 LPSIQAIGYKEFLLYLEG--------TVSLEDAIERIKCNTRQYAKRQLTWFRKW-SDVLWLDSTD  286 (287)
T ss_pred             CchhhhccHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCEEeCCCC
Confidence            789999999999999984        4668999999999999999988  56653 3689999765

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=100.00  E-value=6.8e-53  Score=405.84  Aligned_cols=229  Identities=35%  Similarity=0.558  Sum_probs=199.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      .+++|+|+||||||||+|+..||+.++ ++|||+|++|+|++++|+|+||+.+|+.+++|||++..+|.+ .|++++|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~-~~s~~~f~~   80 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLN-GEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTE-SYSVADFQR   80 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCC-CcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhh-cccHHHHHH
Confidence            357999999999999999999999998 999999999999999999999999999999999999999999 999999999


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc---------
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS---------  176 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~---------  176 (343)
                      +|.+.|++++++|++||||||||+|++||+.+..                                ||..+         
T Consensus        81 ~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~  160 (307)
T PRK00091         81 DALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQ  160 (307)
T ss_pred             HHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCc
Confidence            9999999999999999999999999999987532                                23221         


Q ss_pred             -------cccccCCCccccc------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCc
Q 019312          177 -------VFDDRFDSDSVSS------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVS  243 (343)
Q Consensus       177 -------~~~~~~~~~~~~~------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~  243 (343)
                             ++..+  +++++.      ..+|++++|||++|+++|++||++||+.|+++||+|||+.|++.++.       
T Consensus       161 Ri~RAlEi~~~t--G~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~-------  231 (307)
T PRK00091        161 RIIRALEVYELT--GKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYL-------  231 (307)
T ss_pred             hhHHHHHHHHHH--CCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCC-------
Confidence                   11111  223322      24688999999999999999999999999999999999999987553       


Q ss_pred             cccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEec
Q 019312          244 LGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLD  306 (343)
Q Consensus       244 ~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld  306 (343)
                      .+.+++|+|||||+++||++        +.+++++++.+..+||||||+|  |++++ .+++|+|
T Consensus       232 ~~~~~~~aIGykE~~~yl~g--------~~s~~e~~e~i~~~Tr~yAKRQ~TWfr~~-~~~~w~~  287 (307)
T PRK00091        232 PDLPAMRAIGYKELLAYLDG--------EISLEEAIEKIKQATRQYAKRQLTWFRRQ-PDIHWLD  287 (307)
T ss_pred             CCCccceeecHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCeeec
Confidence            25789999999999999984        4568999999999999999988  56652 3689998

>PLN02840 tRNA dimethylallyltransferase

Probab=100.00  E-value=9.7e-53  Score=416.92  Aligned_cols=239  Identities=27%  Similarity=0.432  Sum_probs=199.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++.+|+|+||||||||||+..|++.++ ++|||.|++|+|++++|+|+||+.+|+.+|+|||+++++|.+ .||+++|.
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~-~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-~ySv~~F~   96 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLN-GEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-DYSVGAFF   96 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCC-CCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCC-ceeHHHHH
Confidence            5567999999999999999999999999 899999999999999999999999999999999999999999 99999999


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc-------------------------------------Ccccc---
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY-------------------------------------DRGLS---  176 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~-------------------------------------dp~~~---  176 (343)
                      ++|.++|++|+++|++||||||||||++||++|..                                     || .+   
T Consensus        97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i  175 (421)
T PLN02840         97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDP-KARSL  175 (421)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCc-HHHhc
Confidence            99999999999999999999999999999998632                                     33 21   


Q ss_pred             -------------cccccCCCccccc-----------------------------ccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          177 -------------VFDDRFDSDSVSS-----------------------------SLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       177 -------------~~~~~~~~~~~~~-----------------------------~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                                   ++..+  +++++.                             .++|++++|+|++||++||+||+.|
T Consensus       176 ~pnD~~Ri~RALEV~~~T--G~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~R  253 (421)
T PLN02840        176 PRNDWYRLRRSLEIIKSS--GSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLR  253 (421)
T ss_pred             CCCcHHHHHHHHHHHHHH--CCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence                         11111  111110                             2358888999999999999999999


Q ss_pred             HHHHHh--ccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHH---HHHHHHHHHH
Q 019312          215 VDDMLE--SGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVR---RGVYQEARQI  289 (343)
Q Consensus       215 v~~Ml~--~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~---~~~~~~tRQ~  289 (343)
                      |++||+  +||++||+.|++.++.    .  ...+++|+|||||+++||+....  ..++.+++++.   +.+..+||||
T Consensus       254 vd~Ml~~~~GLleEV~~Ll~~g~~----~--~~~~a~~aIGYkE~~~yL~~~~~--~~G~~s~ee~~~~~e~i~~~TRqY  325 (421)
T PLN02840        254 CEEMLAGTNGILSEASWLLDLGLL----P--NSNSATRAIGYRQAMEYLLQCRQ--NGGESSPQEFLAFLSKFQTASRNF  325 (421)
T ss_pred             HHHHHHcccCHHHHHHHHHHcCCC----c--cccchHHHhcHHHHHHHHHhhcc--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999  9999999999987653    1  13578999999999999973221  11245677666   8999999999


Q ss_pred             HHHH--hhhhCCCCeeEecchh
Q 019312          290 DKIL--KLERAGWDLRRLDATT  309 (343)
Q Consensus       290 ak~q--~l~~~gw~i~~ld~t~  309 (343)
                      ||+|  |+++. ..++|+|+++
T Consensus       326 AKRQ~TWFR~~-~~~~w~~~~~  346 (421)
T PLN02840        326 AKRQMTWFRNE-PIYHWLDASQ  346 (421)
T ss_pred             HHHHHHHhCCC-CCCeEecCCC
Confidence            9988  56653 4589999754

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2

Probab=100.00  E-value=5.2e-47  Score=356.33  Aligned_cols=195  Identities=33%  Similarity=0.529  Sum_probs=155.8

Q ss_pred             eEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--
Q 019312           94 MQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--  171 (343)
Q Consensus        94 ~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--  171 (343)
                      ||||+||||+|+||+.+|+.+|||||+|+++|++ .||+++|.++|.++|++|+++|++||||||||||++||++|..  
T Consensus         1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e-~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~   79 (253)
T PF01715_consen    1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDE-EYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADI   79 (253)
T ss_dssp             STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS----HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--T
T ss_pred             CCccCCCceeeCCCCHHHHcCCCEeeeeeecccC-CCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhh
Confidence            6899999999999999999999999999999999 9999999999999999999999999999999999999998742  


Q ss_pred             ------------------------------Ccccc----------------cccccCCCcccc-------cccCCceEEE
Q 019312          172 ------------------------------DRGLS----------------VFDDRFDSDSVS-------SSLRYNCCFL  198 (343)
Q Consensus       172 ------------------------------dp~~~----------------~~~~~~~~~~~~-------~~~~~~~~~i  198 (343)
                                                    ||..+                ++..+  +++++       ..++|++++|
T Consensus        80 p~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~t--G~~~s~~~~~~~~~~~~~~~~i  157 (253)
T PF01715_consen   80 PEVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELT--GKPPSEWQKKQKPPPRYDFLVI  157 (253)
T ss_dssp             SSSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHH--SS-HHHHHHCHHHCBSSEEEEE
T ss_pred             ccccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhc--CCChhHhhhcccccccCCeEEE
Confidence                                          33221                11111  23333       1357899999


Q ss_pred             EEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHH
Q 019312          199 WVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPV  278 (343)
Q Consensus       199 ~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~  278 (343)
                      ||+++++.|++||++||++|+++||++||+.|++.+..       .+.+++|+|||||+++||++        +.+++++
T Consensus       158 ~L~~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~-------~~~~~~~aIGYkE~~~~l~g--------~~~~~e~  222 (253)
T PF01715_consen  158 GLDRDREELYERINKRVDEMLEQGLLEEVRALLERGLP-------PDLPAMQAIGYKEFIDYLEG--------EISLEEA  222 (253)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGG-------TTSCGGGSTTHHHHHHHHTT--------SSCHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC-------CcchhceeeehHHHHHhhcC--------CCCHHHH
Confidence            99999999999999999999999999999999998753       36889999999999999985        4568999


Q ss_pred             HHHHHHHHHHHHHHH--hhhhCCCCeeEecc
Q 019312          279 RRGVYQEARQIDKIL--KLERAGWDLRRLDA  307 (343)
Q Consensus       279 ~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~  307 (343)
                      .+....+||||||+|  |+++ ...++|+|.
T Consensus       223 ~e~i~~~TrqyAKRQ~TWfr~-~~~~~w~d~  252 (253)
T PF01715_consen  223 IERIKTNTRQYAKRQRTWFRN-QPNIHWIDI  252 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TSSEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCCCeeeeC
Confidence            999999999999988  5665 345999985

5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=99.92  E-value=1e-24  Score=198.11  Aligned_cols=178  Identities=20%  Similarity=0.313  Sum_probs=134.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ++++|+||||+|||.++..||+.++ ++||+.|++|+|.+++++|++|+++|+.++++.+++.....++.+++.++.+..
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g-~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTG-APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhC-CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHH
Confidence            5899999999999999999999999 999999999999999999999999999999999999998888899999999999


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEe-CCHHHHHHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVD-SSLQLLYDYLNKRVDDM  218 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~-~~re~L~~RI~~Rv~~M  218 (343)
                      ...+.++.+ ++.+|+.|||...++.+...   +    ++.          .+|...+..+. ++++....|+.+||.+|
T Consensus        81 i~~v~~~~~-~~~~IlEGGSISLl~~m~~~---~----~w~----------~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M  142 (233)
T PF01745_consen   81 ISEVNSYSA-HGGLILEGGSISLLNCMAQD---P----YWS----------LDFRWHIRRLRLPDEEVFMARAKRRVRQM  142 (233)
T ss_dssp             HHHHHTTTT-SSEEEEEE--HHHHHHHHH----T----TTS----------SSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHhccc-cCceEEeCchHHHHHHHHhc---c----ccc----------CCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence            999998887 77899999999999999753   2    221          24555566555 57888999999999999


Q ss_pred             Hh-----ccHHHHHHHHHhccccccCCCCccccchhhhc-ChHHHHHHHhhCC
Q 019312          219 LE-----SGMFEELAEFFDSDRMRNNNSVSLGVGLLKAI-GVPEFERYFKMYP  265 (343)
Q Consensus       219 l~-----~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaI-GykE~~~yl~~~~  265 (343)
                      +.     .++++|+..++..+.         .+++++.| ||+.+++|.+.+.
T Consensus       143 L~p~~~~~Sll~EL~~lW~~p~---------~r~~ledIdGyr~~i~~a~~~~  186 (233)
T PF01745_consen  143 LRPDSSGPSLLEELVALWNDPA---------LRPILEDIDGYRYIIRFARKHQ  186 (233)
T ss_dssp             HS--SSS--HHHHHHHHHTSTT---------HHHHHTTSTTHHHHHHHHHHTT
T ss_pred             cCCCCCCCcHHHHHHHHHhCcc---------ccchHhhhccHHHHHHHHHHhC
Confidence            96     489999999997633         57888888 9999999998654

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.26  E-value=7.1e-12  Score=113.13  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=85.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++++++|+||||||||||++.|++.++ .         +|...+++|.+|...+..+.+|++++...+.. .+..+.|.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~-~~~~~~~~   71 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP-N---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEE-MIENGEFL   71 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc-c---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHH-HHHcCCcE
Confidence            5689999999999999999999999875 3         47778889999988888888888776544433 22222222


Q ss_pred             ----------hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312          137 ----------LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL  206 (343)
Q Consensus       137 ----------~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~  206 (343)
                                ......|....+.|+.+|+..-- -....+...                     ....+.++.++++.++
T Consensus        72 ~~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~-~g~~~l~~~---------------------~~~~~~I~i~~~s~~~  129 (205)
T PRK00300         72 EWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDW-QGARQVKKK---------------------MPDAVSIFILPPSLEE  129 (205)
T ss_pred             EEEEECCccccCcHHHHHHHHHcCCeEEEeCCH-HHHHHHHHh---------------------CCCcEEEEEECcCHHH
Confidence                      22356788888899988774311 111111110                     0112345556778999


Q ss_pred             HHHHHHHHH
Q 019312          207 LYDYLNKRV  215 (343)
Q Consensus       207 L~~RI~~Rv  215 (343)
                      +.+|+..|.
T Consensus       130 l~~Rl~~R~  138 (205)
T PRK00300        130 LERRLRGRG  138 (205)
T ss_pred             HHHHHHhcC
Confidence            999999885

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.24  E-value=1.3e-11  Score=111.28  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      ++.+++|+||+|||||||++.|.+..+ .         ++.-.+.+|.+|.+.|..|+.||+++.-.+.. .+..+.|.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~-~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~-~i~~~~f~e   71 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP-D---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKK-GIADGEFLE   71 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC-c---------cccccCccCCCCCCCCCCCceeEeCCHHHHHH-HHHcCCeEE
Confidence            578999999999999999999988764 2         23346789999999999999999998777665 555555655


Q ss_pred             hh----------hHHHHHHHhcCCeeEEEc
Q 019312          138 QA----------DNAISDIISRKKTPLLVG  157 (343)
Q Consensus       138 ~a----------~~~i~~i~~~g~~pIlvG  157 (343)
                      .+          .+.|+++.+.|+++|+.-
T Consensus        72 ~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~  101 (186)
T PRK14737         72 WAEVHDNYYGTPKAFIEDAFKEGRSAIMDI  101 (186)
T ss_pred             EEEECCeeecCcHHHHHHHHHcCCeEEEEc
Confidence            44          477899999999988863

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.22  E-value=1.2e-11  Score=109.39  Aligned_cols=124  Identities=20%  Similarity=0.163  Sum_probs=82.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      |++++|+||||||||||++.|++.++ ..         +-...++|.+|...+..+..|++++...+.. .+..++|...
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~-~~---------~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~   69 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP-NL---------KFSISATTRKPRPGEVDGVDYFFVSKEEFEE-MIAAGEFLEW   69 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc-cc---------cccccceeeCCCCCCcCCcEEEEecHHHHHH-HHHcCCcEEE
Confidence            57999999999999999999999876 31         1233556778887788888888877544433 3344444432


Q ss_pred             h----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHH
Q 019312          139 A----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY  208 (343)
Q Consensus       139 a----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~  208 (343)
                      .          ...|..+.+.|+++|+....+-. +.+...                     ......++++.++.+.+.
T Consensus        70 ~~~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~-~~~~~~---------------------~~~~~~i~~~~~~~e~~~  127 (180)
T TIGR03263        70 AEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGA-RQVKKK---------------------FPDAVSIFILPPSLEELE  127 (180)
T ss_pred             EEECCeeeCCcHHHHHHHHHCCCeEEEECCHHHH-HHHHHh---------------------CCCcEEEEEECCCHHHHH
Confidence            2          56788888999998885432211 111110                     001134556678899999


Q ss_pred             HHHHHHH
Q 019312          209 DYLNKRV  215 (343)
Q Consensus       209 ~RI~~Rv  215 (343)
                      +|+.+|.
T Consensus       128 ~Rl~~r~  134 (180)
T TIGR03263       128 RRLRKRG  134 (180)
T ss_pred             HHHHHcC
Confidence            9998885

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.20  E-value=1.7e-11  Score=109.84  Aligned_cols=124  Identities=22%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +|.+++|+||||+|||||.+.|....+           +.--.+.+|.+|++.|..|+.|||++.-.+.. .+...+|.+
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-----------l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~-~i~~~~fLE   70 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-----------LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEE-LIERDEFLE   70 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-----------eEEEEEeccCCCCCCCcCCceeEeCCHHHHHH-HHhcCCcEE
Confidence            589999999999999999999987653           24456779999999999999999999887777 667777766


Q ss_pred             hh----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHH
Q 019312          138 QA----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLL  207 (343)
Q Consensus       138 ~a----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L  207 (343)
                      .|          ...++++.+.|+..|+.=              |-      .+  ...+....+--+.+|.++|+.++|
T Consensus        71 ~a~~~gnyYGT~~~~ve~~~~~G~~vildI--------------d~------qG--a~qvk~~~p~~v~IFi~pPs~eeL  128 (191)
T COG0194          71 WAEYHGNYYGTSREPVEQALAEGKDVILDI--------------DV------QG--ALQVKKKMPNAVSIFILPPSLEEL  128 (191)
T ss_pred             EEEEcCCcccCcHHHHHHHHhcCCeEEEEE--------------eh------HH--HHHHHHhCCCeEEEEEcCCCHHHH
Confidence            55          344555555555444421              00      00  011112222124456677889999


Q ss_pred             HHHHHHHH
Q 019312          208 YDYLNKRV  215 (343)
Q Consensus       208 ~~RI~~Rv  215 (343)
                      .+||..|-
T Consensus       129 ~~RL~~Rg  136 (191)
T COG0194         129 ERRLKGRG  136 (191)
T ss_pred             HHHHHccC
Confidence            99999884

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.05  E-value=9.3e-10  Score=107.54  Aligned_cols=91  Identities=18%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .++++.+++-.|....  +++++++++          .+|++++|+||||||||||++.+|+...+.    .|.+ .+.|
T Consensus         2 ~~i~l~~v~K~yg~~~--~l~~i~l~i----------~~Gef~vllGPSGcGKSTlLr~IAGLe~~~----~G~I-~i~g   64 (338)
T COG3839           2 AELELKNVRKSFGSFE--VLKDVNLDI----------EDGEFVVLLGPSGCGKSTLLRMIAGLEEPT----SGEI-LIDG   64 (338)
T ss_pred             cEEEEeeeEEEcCCce--eeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence            3678889988888654  899999998          999999999999999999999999988744    7888 5889


Q ss_pred             ccccCCCCCccccccc--CccccccccCCC
Q 019312          100 LDITTNKIPSHKRHNV--PHHLLGEFVPDD  127 (343)
Q Consensus       100 l~I~T~kp~~~e~~~i--~h~li~~~~~~~  127 (343)
                      .+++...|......-|  .|-|+..+.+.+
T Consensus        65 ~~vt~l~P~~R~iamVFQ~yALyPhmtV~~   94 (338)
T COG3839          65 RDVTDLPPEKRGIAMVFQNYALYPHMTVYE   94 (338)
T ss_pred             EECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence            9998766654444444  456666655555

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.04  E-value=2.1e-10  Score=98.25  Aligned_cols=96  Identities=20%  Similarity=0.188  Sum_probs=71.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh---
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL---  137 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~---  137 (343)
                      +++|+||||||||||++.|++.++ ..      +  ..-...+|.+|+..+..+++||+++...+.. .+..+.|.+   
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~-~~------~--~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~-~~~~~~f~e~~~   70 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD-PN------F--GFSVSHTTRKPRPGEVDGVDYHFVSKEEFER-LIENGEFLEWAE   70 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC-cc------c--eecccccccCCCCCccCCceeEEeCHHHHHH-HHHcCCeEEEEE
Confidence            478999999999999999999876 21      1  1234457888988899999999998776665 555555544   


Q ss_pred             -------hhhHHHHHHHhcCCeeEEEcCchhhHHHHH
Q 019312          138 -------QADNAISDIISRKKTPLLVGGSNSFIYSLL  167 (343)
Q Consensus       138 -------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl  167 (343)
                             ...+.++++.+.|++||+.. +...++.|.
T Consensus        71 ~~~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~  106 (137)
T cd00071          71 FHGNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVK  106 (137)
T ss_pred             EcCEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHH
Confidence                   56788999999999888765 444444443

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.02  E-value=2.4e-10  Score=107.78  Aligned_cols=70  Identities=23%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.+++|+|.  ...+++++++++          ++|++++|+||||||||||+++|++.++|.    .|.+ .+.|.
T Consensus         2 ~L~~~~ls~~y~--~~~il~~ls~~i----------~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~----~G~V-~l~g~   64 (258)
T COG1120           2 MLEVENLSFGYG--GKPILDDLSFSI----------PKGEITGILGPNGSGKSTLLKCLAGLLKPK----SGEV-LLDGK   64 (258)
T ss_pred             eeEEEEEEEEEC--CeeEEecceEEe----------cCCcEEEEECCCCCCHHHHHHHHhccCCCC----CCEE-EECCC
Confidence            367889999999  445899999998          889999999999999999999999999865    6888 48898


Q ss_pred             cccCCCC
Q 019312          101 DITTNKI  107 (343)
Q Consensus       101 ~I~T~kp  107 (343)
                      +|.+-++
T Consensus        65 ~i~~~~~   71 (258)
T COG1120          65 DIASLSP   71 (258)
T ss_pred             chhhcCH
Confidence            8876443

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.00  E-value=7.9e-10  Score=98.62  Aligned_cols=125  Identities=21%  Similarity=0.262  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      ++++++|+||+|||||||+..|...++ .      .+  ......+|.+|...|..|+.||+++.-.+.. ....+.|.+
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~-~------~~--~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~-~~~~~~fie   70 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP-D------KF--GRVVSHTTRPPRPGEVDGVDYHFVSKEEFER-MIKAGEFIE   70 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST-T------TE--EEEEEEESS-GGTTS-TTTSEEE--HHHHHH-HHHTTHEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc-c------cc--ccceeecccCCcccccCCcceEEEeechhhh-hhccccEEE
Confidence            368999999999999999999999887 2      22  3345668899998999999999987665544 333333332


Q ss_pred             ----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHHH
Q 019312          138 ----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQL  206 (343)
Q Consensus       138 ----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re~  206 (343)
                                .....|..+.+.|+.+|+.-. .--++.|-.                     . ...+.++++ .++.+.
T Consensus        71 ~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~-~~g~~~L~~---------------------~-~~~~~~IfI~~~s~~~  127 (183)
T PF00625_consen   71 YGEYDGNYYGTSKSAIDKVLEEGKHCILDVD-PEGVKQLKK---------------------A-GFNPIVIFIKPPSPEV  127 (183)
T ss_dssp             EEEETTEEEEEEHHHHHHHHHTTTEEEEEET-HHHHHHHHH---------------------C-TTTEEEEEEEESSHHH
T ss_pred             EeeecchhhhhccchhhHhhhcCCcEEEEcc-HHHHHHHHh---------------------c-ccCceEEEEEccchHH
Confidence                      235778888899999888643 111222221                     0 233455666 567899


Q ss_pred             HHHHHHHHH
Q 019312          207 LYDYLNKRV  215 (343)
Q Consensus       207 L~~RI~~Rv  215 (343)
                      |.+|+..|-
T Consensus       128 l~~~l~~r~  136 (183)
T PF00625_consen  128 LKRRLRRRG  136 (183)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHhccc
Confidence            999887664

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.3e-10  Score=103.86  Aligned_cols=93  Identities=24%  Similarity=0.324  Sum_probs=75.2

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccccccc
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNV  115 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i  115 (343)
                      ...|+++++++          ++|++.+|+||||||||||+..|++.-. .+|. .|.+ +++|.||+...|.+..+.|+
T Consensus        17 keILkgvnL~v----------~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt-~G~I-~~~GedI~~l~~~ERAr~Gi   83 (251)
T COG0396          17 KEILKGVNLTV----------KEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVT-EGEI-LFDGEDILELSPDERARAGI   83 (251)
T ss_pred             hhhhcCcceeE----------cCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEe-cceE-EECCcccccCCHhHHHhcCC
Confidence            36899999998          8999999999999999999999999876 6654 5777 59999999988877677777


Q ss_pred             CccccccccCCCc-ccChhhhhhhhhHHHH
Q 019312          116 PHHLLGEFVPDDV-EFTPDDFRLQADNAIS  144 (343)
Q Consensus       116 ~h~li~~~~~~~~-~~s~~~f~~~a~~~i~  144 (343)
                         ++.+..|.++ ..+..+|.+.|.++..
T Consensus        84 ---fLafQ~P~ei~GV~~~~fLr~a~n~~~  110 (251)
T COG0396          84 ---FLAFQYPVEIPGVTNSDFLRAAMNARR  110 (251)
T ss_pred             ---EEeecCCccCCCeeHHHHHHHHHHhhh
Confidence               4555555552 4678889888776643

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.98  E-value=1.6e-09  Score=98.88  Aligned_cols=126  Identities=15%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ..+.+++|+||+|||||||+..|.+... .         +..-...+|..+...|..|..||+++...+.. .+..+.|.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~---------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~-~~~~~~~l   79 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERKL-P---------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFRE-MISQNELL   79 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcCC-c---------ccccccccCCCCCCCCCCCCeeeeCCHHHHHH-HHHcCCcE
Confidence            5678999999999999999999976532 1         12234456666777788899999887655433 33223333


Q ss_pred             hh----------hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceE-EEEEeCCHH
Q 019312          137 LQ----------ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCC-FLWVDSSLQ  205 (343)
Q Consensus       137 ~~----------a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~~re  205 (343)
                      +.          ....|....+.|+++|+. ++.-++..|-..                      ..+.. ++.++++.+
T Consensus        80 e~~~~~g~~YGt~~~~i~~~~~~g~~vi~~-~~~~g~~~l~~~----------------------~pd~~~if~~pps~e  136 (206)
T PRK14738         80 EWAEVYGNYYGVPKAPVRQALASGRDVIVK-VDVQGAASIKRL----------------------VPEAVFIFLAPPSMD  136 (206)
T ss_pred             EEEEEcCceecCCHHHHHHHHHcCCcEEEE-cCHHHHHHHHHh----------------------CCCeEEEEEeCCCHH
Confidence            32          235788888889876664 343343333210                      01233 344567889


Q ss_pred             HHHHHHHHHHH
Q 019312          206 LLYDYLNKRVD  216 (343)
Q Consensus       206 ~L~~RI~~Rv~  216 (343)
                      +|.+|+..|-+
T Consensus       137 ~l~~Rl~~R~~  147 (206)
T PRK14738        137 ELTRRLELRRT  147 (206)
T ss_pred             HHHHHHHHcCC
Confidence            99999999853

>smart00072 GuKc Guanylate kinase homologues

Probab=98.97  E-value=2.3e-09  Score=95.84  Aligned_cols=124  Identities=18%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh-----
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD-----  133 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~-----  133 (343)
                      +++++|+||+||||+||+..|...++       +.  +..-...+|..+.+.|..|+.||+++.-.+.. .+..+     
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~-------~~--~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~-~i~~g~fve~   71 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIP-------DA--FERVVSHTTRPPRPGEVNGVDYHFVSREEFED-DIKSGLFLEW   71 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCC-------cc--eEeeeeecCCCCCCCCcCCceEEECCHHHHHH-HHHcCCeEEE
Confidence            57899999999999999999998875       22  24455667888888899999999887554433 22222     


Q ss_pred             -----hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHHHH
Q 019312          134 -----DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQLL  207 (343)
Q Consensus       134 -----~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re~L  207 (343)
                           ++.-.....|.++.+.|+.+|+.+. .-.++.|-..                      ..+..++++ .++.+.|
T Consensus        72 ~~~~g~~YGt~~~~i~~~~~~~~~~ild~~-~~~~~~l~~~----------------------~~~~~vIfi~~~s~~~l  128 (184)
T smart00072       72 GEYSGNYYGTSKETIRQVAEQGKHCLLDID-PQGVKQLRKA----------------------QLYPIVIFIAPPSSEEL  128 (184)
T ss_pred             EEEcCcCcccCHHHHHHHHHcCCeEEEEEC-HHHHHHHHHh----------------------CCCcEEEEEeCcCHHHH
Confidence                 2333445678888888998888764 2222222110                      112345666 4788899


Q ss_pred             HHHHHHHH
Q 019312          208 YDYLNKRV  215 (343)
Q Consensus       208 ~~RI~~Rv  215 (343)
                      .+|+.+|-
T Consensus       129 ~~rl~~R~  136 (184)
T smart00072      129 ERRLRGRG  136 (184)
T ss_pred             HHHHHhcC
Confidence            99998874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.96  E-value=4.4e-09  Score=94.17  Aligned_cols=120  Identities=20%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh-----
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD-----  133 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~-----  133 (343)
                      +.+++|+||||||||||++.|++.++ .+++..|+.       + +..+...   ...++.+...++.. .+...     
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~~~~~~~~~-------~-~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~   68 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ-TQLLVAHRY-------I-TRPASAG---SENHIALSEQEFFT-RAGQNLFALS   68 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC-CeEEEcCEE-------C-CCccchh---HHhheeEcHHHHHH-HHHCCchhhH
Confidence            57899999999999999999999876 344333332       1 1111111   11111111111111 00001     


Q ss_pred             -----hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHH
Q 019312          134 -----DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY  208 (343)
Q Consensus       134 -----~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~  208 (343)
                           .+..... .+++..+.|+. ||++|+.-+.+.+...        +             +-...+++|+++.+.|.
T Consensus        69 ~~~~g~~yg~~~-~~~~~l~~g~~-VI~~G~~~~~~~~~~~--------~-------------~~~~~vi~l~~s~e~l~  125 (186)
T PRK10078         69 WHANGLYYGVGI-EIDLWLHAGFD-VLVNGSRAHLPQARAR--------Y-------------QSALLPVCLQVSPEILR  125 (186)
T ss_pred             HHHhCCccCCcH-HHHHHHhCCCE-EEEeChHHHHHHHHHH--------c-------------CCCEEEEEEeCCHHHHH
Confidence                 1111122 35666677875 6668877665555421        0             12356789999999999


Q ss_pred             HHHHHH
Q 019312          209 DYLNKR  214 (343)
Q Consensus       209 ~RI~~R  214 (343)
                      +|+..|
T Consensus       126 ~RL~~R  131 (186)
T PRK10078        126 QRLENR  131 (186)
T ss_pred             HHHHHh
Confidence            999887

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.1e-09  Score=114.36  Aligned_cols=72  Identities=21%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             CCccceeecccCCcCCcccc-cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRRR-SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-++.|+|.+|+|.||+++. ++++++++++          ++|++++++||||+||||++..|-+.++|.    +|++ 
T Consensus       461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti----------~pGe~vALVGPSGsGKSTiasLL~rfY~Pt----sG~I-  525 (716)
T KOG0058|consen  461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTI----------RPGEVVALVGPSGSGKSTIASLLLRFYDPT----SGRI-  525 (716)
T ss_pred             cccceEEEEEeeeecCCCCCchhhcCceeee----------CCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CCeE-
Confidence            46799999999999998863 4999999998          899999999999999999999999999976    7888 


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                      ..+|.||-
T Consensus       526 llDG~~i~  533 (716)
T KOG0058|consen  526 LLDGVPIS  533 (716)
T ss_pred             EECCeehh
Confidence            57788774

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.92  E-value=3.5e-09  Score=102.04  Aligned_cols=130  Identities=16%  Similarity=0.258  Sum_probs=90.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceE------------------EEecccccCCCCCcccccccCc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQ------------------VYKGLDITTNKIPSHKRHNVPH  117 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~q------------------vy~gl~I~T~kp~~~e~~~i~h  117 (343)
                      +.+-+|+|.|+|||||||+|..||..++ .. +|+.|+++                  .|..+++.+++|+.++     |
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~-~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~  163 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLG-IRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----P  163 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----h
Confidence            3456889999999999999999999998 54 89999998                  7888888888777544     6


Q ss_pred             cccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEE
Q 019312          118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF  197 (343)
Q Consensus       118 ~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~  197 (343)
                      ++.++..+.+ .++++     +...|.....+|.. +|+-|.++.          |..  ...-     ...  .-+++.
T Consensus       164 ~l~g~~~~~~-~v~~g-----i~~~I~~~~~~g~s-~IiEGvhl~----------P~~--i~~~-----~~~--~~~~i~  217 (301)
T PRK04220        164 VIYGFERHVE-PVSVG-----VEAVIERALKEGIS-VIIEGVHIV----------PGF--IKEK-----YLE--NPNVFM  217 (301)
T ss_pred             hhhhHHHHHH-HHHHH-----HHHHHHHHHHhCCc-EEEecCCCC----------HHH--HHHh-----hhc--CCCEEE
Confidence            7777777655 44444     66778888878875 555555542          221  0000     000  012344


Q ss_pred             EEEe-CCHHHHHHHHHHHHHHH
Q 019312          198 LWVD-SSLQLLYDYLNKRVDDM  218 (343)
Q Consensus       198 i~L~-~~re~L~~RI~~Rv~~M  218 (343)
                      ++|. .+.+...+|...|...|
T Consensus       218 ~~l~i~~ee~h~~RF~~R~~~~  239 (301)
T PRK04220        218 FVLTLSDEEAHKARFYARARVS  239 (301)
T ss_pred             EEEEECCHHHHHHHHHHHHhhh
Confidence            5555 67899999999999998

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.92  E-value=2.9e-09  Score=96.01  Aligned_cols=90  Identities=21%  Similarity=0.215  Sum_probs=71.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      |.|.+|+-.|+.+ +.+|+++++++          .+|+++.|+||||+|||||++.|.+...|.    .|++ .+.|.|
T Consensus         2 I~f~~V~k~Y~~g-~~aL~~vs~~i----------~~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i-~~~~~d   65 (223)
T COG2884           2 IRFENVSKAYPGG-REALRDVSFHI----------PKGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKI-LVNGHD   65 (223)
T ss_pred             eeehhhhhhcCCC-chhhhCceEee----------cCceEEEEECCCCCCHHHHHHHHHhhhcCC----CceE-EECCee
Confidence            6789999999999 66999999998          999999999999999999999999988765    7888 588999


Q ss_pred             ccCCCCCc----cccccc---CccccccccCCC
Q 019312          102 ITTNKIPS----HKRHNV---PHHLLGEFVPDD  127 (343)
Q Consensus       102 I~T~kp~~----~e~~~i---~h~li~~~~~~~  127 (343)
                      ++.-+-..    ..+-|+   .|+|+......+
T Consensus        66 l~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvye   98 (223)
T COG2884          66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYE   98 (223)
T ss_pred             cccccccccchhhheeeeEeeeccccccchHhh
Confidence            87544321    122233   577777665555

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.91  E-value=2.4e-09  Score=100.73  Aligned_cols=98  Identities=17%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+++|.|... + +|+++++++          .+|.+++|+||||||||||++.+.+.+.|.    .|++. ..|
T Consensus         3 ~~i~v~nl~v~y~~~-~-vl~~i~l~v----------~~G~~~~iiGPNGaGKSTLlK~iLGll~p~----~G~i~-~~g   65 (254)
T COG1121           3 PMIEVENLTVSYGNR-P-VLEDISLSV----------EKGEITALIGPNGAGKSTLLKAILGLLKPS----SGEIK-IFG   65 (254)
T ss_pred             cEEEEeeeEEEECCE-e-eeeccEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCcCC----cceEE-Ecc
Confidence            357899999999976 5 999999998          889999999999999999999999988866    78885 445


Q ss_pred             ccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312          100 LDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus       100 l~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      .++...++ .....-+|.+.  ..+..- ..++.++...
T Consensus        66 ~~~~~~~~-~~~IgYVPQ~~--~~d~~f-P~tV~d~V~~  100 (254)
T COG1121          66 KPVRKRRK-RLRIGYVPQKS--SVDRSF-PITVKDVVLL  100 (254)
T ss_pred             cccccccc-CCeEEEcCccc--ccCCCC-CcCHHHHHHc
Confidence            55432221 11223345543  233333 5666666543

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.91  E-value=2e-09  Score=108.39  Aligned_cols=79  Identities=23%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             CCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312            8 PPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE   87 (343)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e   87 (343)
                      +|. ++|-...++.+++.+|+|.|.++.| +++++++++          .+|+.++++||||+||||+++.|.+.++   
T Consensus       525 ~P~-a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v----------~pGktvAlVG~SGaGKSTimRlLfRffd---  589 (790)
T KOG0056|consen  525 LPG-APPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTV----------QPGKTVALVGPSGAGKSTIMRLLFRFFD---  589 (790)
T ss_pred             CCC-CCCccccCCeEEEEEeEEecCCCCc-eeecceEEe----------cCCcEEEEECCCCCchhHHHHHHHHHhh---
Confidence            444 3444567799999999999999988 999999998          8899999999999999999999999998   


Q ss_pred             eecCCceEEEeccccc
Q 019312           88 IINSDKMQVYKGLDIT  103 (343)
Q Consensus        88 IIs~Ds~qvy~gl~I~  103 (343)
                       +|+|++. +.|.||.
T Consensus       590 -v~sGsI~-iDgqdIr  603 (790)
T KOG0056|consen  590 -VNSGSIT-IDGQDIR  603 (790)
T ss_pred             -ccCceEE-EcCchHH
Confidence             3589994 8898874

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.89  E-value=1.6e-09  Score=115.28  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.+++++++.+|+|+|..+.|.++.++++++          ++|+.++|+|+||||||||++.|.+.+.|.    .|++
T Consensus       465 ~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I----------~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~----~G~I  530 (709)
T COG2274         465 LPKLQGEIEFENVSFRYGPDDPPVLEDLSLEI----------PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ----QGRI  530 (709)
T ss_pred             ccccCceEEEEEEEEEeCCCCcchhhceeEEe----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE
Confidence            34677999999999999999889999999998          899999999999999999999999999865    7899


Q ss_pred             EEEecccccCC
Q 019312           95 QVYKGLDITTN  105 (343)
Q Consensus        95 qvy~gl~I~T~  105 (343)
                       .+.|.|+..-
T Consensus       531 -~~dg~dl~~i  540 (709)
T COG2274         531 -LLDGVDLNDI  540 (709)
T ss_pred             -EECCEeHHhc
Confidence             5999988643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.5e-09  Score=99.98  Aligned_cols=99  Identities=25%  Similarity=0.405  Sum_probs=75.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.+++|.|+.+ ..+++++++++          .+++.++|+||||||||||++.|++.+.|.    .+.+ ...|.+
T Consensus         4 i~~~~l~~~y~~~-~~~l~~v~~~i----------~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~----~G~v-~~~g~~   67 (235)
T COG1122           4 IEAENLSFRYPGR-KAALKDVSLEI----------EKGERVLLIGPNGSGKSTLLKLLNGLLKPT----SGEV-LVDGLD   67 (235)
T ss_pred             EEEEEEEEEcCCC-ceeeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCcCcCC----CCEE-EECCee
Confidence            5788999999988 67999999998          899999999999999999999999999865    5777 477877


Q ss_pred             ccCCCCCccccc--cc-----CccccccccCCCcccChhhhh
Q 019312          102 ITTNKIPSHKRH--NV-----PHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus       102 I~T~kp~~~e~~--~i-----~h~li~~~~~~~~~~s~~~f~  136 (343)
                      +...+...+-+.  |+     .++++.....+++.|...++.
T Consensus        68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g  109 (235)
T COG1122          68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG  109 (235)
T ss_pred             ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence            653222222222  22     467777666666677766664

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.3e-09  Score=107.03  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=65.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.+|+|.||..++.+|+++++++          .+|+-|+|+|+|||||||++..|++.++|.    +|+++ ..|.
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l----------~~GEkvAIlG~SGsGKSTllqLl~~~~~~~----~G~i~-~~g~  400 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTL----------AQGEKVAILGRSGSGKSTLLQLLAGAWDPQ----QGSIT-LNGV  400 (573)
T ss_pred             eeeeccceeecCCCccchhhccceee----------cCCCeEEEECCCCCCHHHHHHHHHhccCCC----CCeee-ECCc
Confidence            78999999999999999999999998          999999999999999999999999999854    89995 7888


Q ss_pred             cccCCCC
Q 019312          101 DITTNKI  107 (343)
Q Consensus       101 ~I~T~kp  107 (343)
                      ++..-++
T Consensus       401 ~~~~l~~  407 (573)
T COG4987         401 EIASLDE  407 (573)
T ss_pred             ChhhCCh
Confidence            8865543

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.85  E-value=1.2e-08  Score=90.65  Aligned_cols=112  Identities=19%  Similarity=0.270  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      ...|+|+||+||||||+++.|++.++ ..+++.|...              +++.+.     +.....+ .++...|+..
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~-~~~vd~D~~i--------------~~~~g~-----~i~~~~~-~~g~~~fr~~   62 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEI--------------EKRTGA-----DIGWVFD-VEGEEGFRDR   62 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC-CcEEECCchH--------------HHHhCc-----CHhHHHH-HhCHHHHHHH
Confidence            45799999999999999999999998 8888888641              111111     1111122 4566788887


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN  212 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~  212 (343)
                      ..+.+.++...+..+|.+||+...         +|....            .+.....++||+.+.+.+.+||.
T Consensus        63 e~~~l~~l~~~~~~vi~~ggg~v~---------~~~~~~------------~l~~~~~vv~L~~~~e~~~~Ri~  115 (172)
T PRK05057         63 EEKVINELTEKQGIVLATGGGSVK---------SRETRN------------RLSARGVVVYLETTIEKQLARTQ  115 (172)
T ss_pred             HHHHHHHHHhCCCEEEEcCCchhC---------CHHHHH------------HHHhCCEEEEEeCCHHHHHHHHh
Confidence            788888888777777777776432         111100            01112358999999999999985

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.83  E-value=5e-09  Score=107.91  Aligned_cols=71  Identities=18%  Similarity=0.234  Sum_probs=61.6

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ...++++.+|+|.|+...+ +|+++++++          ++|+.++|+||||||||||++.|++.++|.    .|++ .+
T Consensus       331 ~~~~I~~~~vsf~Y~~~~~-vL~~isl~i----------~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~----~G~I-~i  394 (529)
T TIGR02868       331 GKPTLELRDLSFGYPGSPP-VLDGVSLDL----------PPGERVAILGPSGSGKSTLLMLLTGLLDPL----QGEV-TL  394 (529)
T ss_pred             CCceEEEEEEEEecCCCCc-eeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EE
Confidence            3457999999999986544 999999998          999999999999999999999999999865    6888 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.|+..
T Consensus       395 ~g~~i~~  401 (529)
T TIGR02868       395 DGVSVSS  401 (529)
T ss_pred             CCEEhhh
Confidence            7887754

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.80  E-value=6.8e-09  Score=92.39  Aligned_cols=132  Identities=21%  Similarity=0.354  Sum_probs=89.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      .-|+++|+.||||||+.+.||+.++ ..+++.|..-              +++.+     .++-+..+ ...-..|++..
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~-~~F~D~D~~I--------------e~~~g-----~sI~eIF~-~~GE~~FR~~E   61 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALN-LPFIDTDQEI--------------EKRTG-----MSIAEIFE-EEGEEGFRRLE   61 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcC-CCcccchHHH--------------HHHHC-----cCHHHHHH-HHhHHHHHHHH
Confidence            4689999999999999999999999 8888877661              11111     12222333 56778899999


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH-HHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN-KRVDDM  218 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~-~Rv~~M  218 (343)
                      .+.+.++...+...|-.||....         ++++--+            +.-...++||+++.+.|++|++ ++..=.
T Consensus        62 ~~vl~~l~~~~~~ViaTGGG~v~---------~~enr~~------------l~~~g~vv~L~~~~e~l~~Rl~~~~~RPl  120 (172)
T COG0703          62 TEVLKELLEEDNAVIATGGGAVL---------SEENRNL------------LKKRGIVVYLDAPFETLYERLQRDRKRPL  120 (172)
T ss_pred             HHHHHHHhhcCCeEEECCCcccc---------CHHHHHH------------HHhCCeEEEEeCCHHHHHHHhccccCCCc
Confidence            99999999888766666765332         1211000            1112468999999999999998 443444


Q ss_pred             HhccHH-HHHHHHHhc
Q 019312          219 LESGMF-EELAEFFDS  233 (343)
Q Consensus       219 l~~Gll-eEv~~l~~~  233 (343)
                      +..+-- +++++|++.
T Consensus       121 l~~~~~~~~l~~L~~~  136 (172)
T COG0703         121 LQTEDPREELEELLEE  136 (172)
T ss_pred             ccCCChHHHHHHHHHH
Confidence            544444 667777764

>PLN02772 guanylate kinase

Probab=98.80  E-value=6.8e-09  Score=103.19  Aligned_cols=125  Identities=23%  Similarity=0.194  Sum_probs=85.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      ..++++|+||+|||||||++.|.+.++ ..      +  ..-...+|.+|.+.|..|+.|||++.-.+.. .+..+.|.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p-~~------~--~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~-~i~~g~FlE  203 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFP-SM------F--GFSVSHTTRAPREMEKDGVHYHFTERSVMEK-EIKDGKFLE  203 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhcc-cc------c--cccccccCCCCcccccCCceEeeCCHHHHHH-HHHhCccce
Confidence            567999999999999999999988765 21      1  2234668999988899998888887444444 444444444


Q ss_pred             ----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHH
Q 019312          138 ----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLL  207 (343)
Q Consensus       138 ----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L  207 (343)
                                ...+.++.+.+.|+.+|+.              +|+...        +.+.......+.+|.++++.++|
T Consensus       204 ~~e~~Gn~YGTsk~~V~~vl~~Gk~vILd--------------LD~qGa--------r~Lr~~~l~~v~IFI~PPSlEeL  261 (398)
T PLN02772        204 FASVHGNLYGTSIEAVEVVTDSGKRCILD--------------IDVQGA--------RSVRASSLEAIFIFICPPSMEEL  261 (398)
T ss_pred             eeeecCccccccHHHHHHHHHhCCcEEEe--------------CCHHHH--------HHHHHhcCCeEEEEEeCCCHHHH
Confidence                      3357888888899988764              233321        00000011124566778889999


Q ss_pred             HHHHHHH
Q 019312          208 YDYLNKR  214 (343)
Q Consensus       208 ~~RI~~R  214 (343)
                      .+||..|
T Consensus       262 e~RL~~R  268 (398)
T PLN02772        262 EKRLRAR  268 (398)
T ss_pred             HHHHHhc
Confidence            9999888

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.79  E-value=2.5e-08  Score=88.17  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC----cccCh--
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD----VEFTP--  132 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~----~~~s~--  132 (343)
                      +++++|+||+|||||||++.|+..++ .    .+.+. |- ...+|.+..   ..+..++.++......    ..|..  
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~----~~~~~-~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~   70 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA-G----DPRVH-FV-RRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSW   70 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-c----CCcEE-Ee-eEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEE
Confidence            46899999999999999999999876 2    12332 21 122222211   1223333222111111    00100  


Q ss_pred             ---hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHH
Q 019312          133 ---DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYD  209 (343)
Q Consensus       133 ---~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~  209 (343)
                         ..+..... .+....+.|...|+.|+ +-+...+...                      ..+..++||+++.+.+.+
T Consensus        71 ~~~~~~~g~~~-~i~~~~~~g~~vv~~g~-~~~~~~~~~~----------------------~~~~~~i~l~~~~~~~~~  126 (179)
T TIGR02322        71 QAHGLSYGIPA-EIDQWLEAGDVVVVNGS-RAVLPEARQR----------------------YPNLLVVNITASPDVLAQ  126 (179)
T ss_pred             eecCccccChH-HHHHHHhcCCEEEEECC-HHHHHHHHHH----------------------CCCcEEEEEECCHHHHHH
Confidence               01111111 34555667877666665 3343332210                      013467899999999999


Q ss_pred             HHHHH
Q 019312          210 YLNKR  214 (343)
Q Consensus       210 RI~~R  214 (343)
                      ||..|
T Consensus       127 Rl~~R  131 (179)
T TIGR02322       127 RLAAR  131 (179)
T ss_pred             HHHHc
Confidence            99988

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.78  E-value=7.4e-09  Score=101.77  Aligned_cols=97  Identities=21%  Similarity=0.184  Sum_probs=71.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+++=.|-  ...+++++++++          .+|++++|+|||||||||++++||+...|.    .|++ .+.|
T Consensus         4 ~~l~i~~v~k~yg--~~~av~~isl~i----------~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~----~G~I-~l~G   66 (352)
T COG3842           4 PALEIRNVSKSFG--DFTAVDDISLDI----------KKGEFVTLLGPSGCGKTTLLRMIAGFEQPS----SGEI-LLDG   66 (352)
T ss_pred             ceEEEEeeeeecC--CeeEEecceeee----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence            4567777777776  344789999998          999999999999999999999999988754    7888 5889


Q ss_pred             ccccCCCCCccccccc--CccccccccCCC-cccChh
Q 019312          100 LDITTNKIPSHKRHNV--PHHLLGEFVPDD-VEFTPD  133 (343)
Q Consensus       100 l~I~T~kp~~~e~~~i--~h~li~~~~~~~-~~~s~~  133 (343)
                      .+|+.-.|.......|  .|-|+..+.+.+ +.|...
T Consensus        67 ~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk  103 (352)
T COG3842          67 EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK  103 (352)
T ss_pred             EECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence            9998654433222223  466666665554 234444

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.76  E-value=1.4e-08  Score=88.28  Aligned_cols=117  Identities=21%  Similarity=0.308  Sum_probs=75.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      +++..|+|+|++||||||+++.||+.++ ..+++.|.+  ...            ..+.+  +-+.   .+ ......|.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~-~~~~d~d~~--~~~------------~~g~~--~~~~---~~-~~g~~~~~   60 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-YDFIDTDHL--IEA------------RAGKS--IPEI---FE-EEGEAAFR   60 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEChHH--HHH------------HcCCC--HHHH---HH-HHCHHHHH
Confidence            3567999999999999999999999998 778887765  110            01110  0000   11 23445677


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV  215 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv  215 (343)
                      ....+.+.++.......|.+||+..+-.....                     .+.-...+++|+++.+.+.+|+.+|.
T Consensus        61 ~~~~~~~~~l~~~~~~vi~~g~~~~~~~~~r~---------------------~l~~~~~~v~l~~~~~~~~~R~~~~~  118 (175)
T PRK00131         61 ELEEEVLAELLARHNLVISTGGGAVLREENRA---------------------LLRERGTVVYLDASFEELLRRLRRDR  118 (175)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCCEeecHHHHH---------------------HHHhCCEEEEEECCHHHHHHHhcCCC
Confidence            77777888887666666667775443211110                     00012467889999999999998764

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.76  E-value=8.9e-09  Score=93.84  Aligned_cols=67  Identities=19%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   66 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHI----------TKGEMVFLVGHSGAGKSTFLKLILGIEKPT----RGKI-RFNGQD   66 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEe
Confidence            4678888888654334899999998          899999999999999999999999998754    6888 477776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        67 ~~   68 (216)
T TIGR00960        67 LT   68 (216)
T ss_pred             hh
Confidence            64

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.76  E-value=1.2e-08  Score=108.44  Aligned_cols=72  Identities=21%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.+|+|.|+...+.+++++++++          ++|+.++|+|+||||||||++.|++.+.|.    .|++ .+.
T Consensus       449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i----------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id  513 (686)
T TIGR03797       449 SGAIEVDRVTFRYRPDGPLILDDVSLQI----------EPGEFVAIVGPSGSGKSTLLRLLLGFETPE----SGSV-FYD  513 (686)
T ss_pred             CceEEEEEEEEEcCCCCccceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EEC
Confidence            3579999999999866666999999998          999999999999999999999999999865    7888 588


Q ss_pred             cccccCC
Q 019312           99 GLDITTN  105 (343)
Q Consensus        99 gl~I~T~  105 (343)
                      |.|+..-
T Consensus       514 g~~i~~~  520 (686)
T TIGR03797       514 GQDLAGL  520 (686)
T ss_pred             CEEcCcC
Confidence            8888643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.75  E-value=1e-08  Score=109.31  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+...+.+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++ .+.
T Consensus       475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i----------~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id  539 (710)
T TIGR03796       475 SGYVELRNITFGYSPLEPPLIENFSLTL----------QPGQRVALVGGSGSGKSTIAKLVAGLYQPW----SGEI-LFD  539 (710)
T ss_pred             CCeEEEEEEEEecCCCCCCcccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence            4679999999999976666999999998          899999999999999999999999999865    6888 488


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.|+..
T Consensus       540 g~~i~~  545 (710)
T TIGR03796       540 GIPREE  545 (710)
T ss_pred             CEeHHH
Confidence            888754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13946 shikimate kinase; Provisional

Probab=98.75  E-value=1.5e-08  Score=90.73  Aligned_cols=131  Identities=19%  Similarity=0.334  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      +..|+|+|+.||||||+++.||+.++ .++++.|.+  ..            +..+.     +.....+ .++...|...
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg-~~~id~D~~--~~------------~~~g~-----~~~e~~~-~~ge~~~~~~   68 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLG-LPFLDADTE--IE------------RAARM-----TIAEIFA-AYGEPEFRDL   68 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC-CCeECcCHH--HH------------HHhCC-----CHHHHHH-HHCHHHHHHH
Confidence            46899999999999999999999998 888888864  11            01111     0001111 3455667777


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH-
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD-  217 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~-  217 (343)
                      ..+.+.++...+.. ||++|.|.|+        .+..   +     .    .+.-+.+.|||++|.+.+.+|+..|-.. 
T Consensus        69 e~~~l~~l~~~~~~-Vi~~ggg~~~--------~~~~---r-----~----~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp  127 (184)
T PRK13946         69 ERRVIARLLKGGPL-VLATGGGAFM--------NEET---R-----A----AIAEKGISVWLKADLDVLWERVSRRDTRP  127 (184)
T ss_pred             HHHHHHHHHhcCCe-EEECCCCCcC--------CHHH---H-----H----HHHcCCEEEEEECCHHHHHHHhcCCCCCC
Confidence            77888888877765 5555544331        1110   0     0    0011245799999999999999877542 


Q ss_pred             HHh-ccHHHHHHHHH
Q 019312          218 MLE-SGMFEELAEFF  231 (343)
Q Consensus       218 Ml~-~GlleEv~~l~  231 (343)
                      |+. ....+.++.++
T Consensus       128 ~~~~~~~~~~i~~~~  142 (184)
T PRK13946        128 LLRTADPKETLARLM  142 (184)
T ss_pred             cCCCCChHHHHHHHH
Confidence            222 22334455444

>PTZ00243 ABC transporter; Provisional

Probab=98.74  E-value=1.2e-08  Score=117.22  Aligned_cols=74  Identities=18%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |..+++++.+|+|+|+.+.+.+|+++++++          ++|+.|+|+|+||||||||+..|.+.+.+.    .|++ .
T Consensus      1304 ~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I----------~~GekVaIVGrTGSGKSTLl~lLlrl~~p~----~G~I-~ 1368 (1560)
T PTZ00243       1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRI----------APREKVGIVGRTGSGKSTLLLTFMRMVEVC----GGEI-R 1368 (1560)
T ss_pred             CCCCeEEEEEEEEEeCCCCCceeecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-E
Confidence            456789999999999988777999999998          899999999999999999999999998854    7888 5


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.||.+-
T Consensus      1369 IDG~di~~i 1377 (1560)
T PTZ00243       1369 VNGREIGAY 1377 (1560)
T ss_pred             ECCEEcccC
Confidence            889988654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.74  E-value=1.1e-08  Score=93.26  Aligned_cols=67  Identities=22%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             eecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           23 SSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~~s~~i----------~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~   66 (218)
T cd03255           2 ELKNLSKTYGGGGEKVQALKGVSLSI----------EKGEFVAIVGPSGSGKSTLLNILGGLDRPT----SGEV-RVDGT   66 (218)
T ss_pred             eEeeeEEEecCCCcceeEEeeeEEEE----------cCCCEEEEEcCCCCCHHHHHHHHhCCcCCC----ceeE-EECCE
Confidence            5678888886531  34899999998          889999999999999999999999998754    6888 47787


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        67 ~~~~   70 (218)
T cd03255          67 DISK   70 (218)
T ss_pred             ehhh
Confidence            7654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.74  E-value=1.3e-08  Score=92.93  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.+
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~   65 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNV----------YKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAY-INGYS   65 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-ECCEe
Confidence            3567888888753234899999998          899999999999999999999999998754    68884 67776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (220)
T cd03263          66 IR   67 (220)
T ss_pred             cc
Confidence            64

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=2e-08  Score=97.86  Aligned_cols=70  Identities=16%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             cceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           20 QHYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ..+++.+++|.|+...   ..+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++. 
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~----~G~I~-   84 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTF----------EKNKIYFIIGNSGSGKSTLVTHFNGLIKSK----YGTIQ-   84 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE-
Confidence            3589999999997532   34899999998          899999999999999999999999998754    78884 


Q ss_pred             EecccccC
Q 019312           97 YKGLDITT  104 (343)
Q Consensus        97 y~gl~I~T  104 (343)
                      +.|.+++.
T Consensus        85 i~g~~~~~   92 (320)
T PRK13631         85 VGDIYIGD   92 (320)
T ss_pred             ECCEEccc
Confidence            77877754

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.73  E-value=1.8e-08  Score=104.90  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=62.0

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.+|+|.|+...+..+.++++++          ++|+.++|+|+||||||||++.|++.++|.    .|.+ .+.
T Consensus       339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i----------~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~----~G~I-~i~  403 (582)
T PRK11176        339 KGDIEFRNVTFTYPGKEVPALRNINFKI----------PAGKTVALVGRSGSGKSTIANLLTRFYDID----EGEI-LLD  403 (582)
T ss_pred             CCeEEEEEEEEecCCCCCccccCceEEe----------CCCCEEEEECCCCCCHHHHHHHHHhccCCC----CceE-EEC
Confidence            4579999999999876556999999998          899999999999999999999999999864    6888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       404 g~~i~~  409 (582)
T PRK11176        404 GHDLRD  409 (582)
T ss_pred             CEEhhh
Confidence            887753

>PRK13948 shikimate kinase; Provisional

Probab=98.72  E-value=2.2e-08  Score=90.09  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++..|+|+|+.||||||+++.||+.++ ..+|+.|.. +-             +..+.     ++.+... .+....|+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~-ie-------------~~~g~-----si~~if~-~~Ge~~fR   66 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRY-IE-------------RVTGK-----SIPEIFR-HLGEAYFR   66 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHH-HH-------------HHHhC-----CHHHHHH-HhCHHHHH
Confidence            3467999999999999999999999998 888888865 11             11111     0011112 34567888


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      +...+++.++...+...|.+||...-         +|+.-        ..    +.-...++||+++.+.|.+||..+-.
T Consensus        67 ~~E~~~l~~l~~~~~~VIa~GgG~v~---------~~~n~--------~~----l~~~g~vV~L~~~~e~l~~Rl~~~~R  125 (182)
T PRK13948         67 RCEAEVVRRLTRLDYAVISLGGGTFM---------HEENR--------RK----LLSRGPVVVLWASPETIYERTRPGDR  125 (182)
T ss_pred             HHHHHHHHHHHhcCCeEEECCCcEEc---------CHHHH--------HH----HHcCCeEEEEECCHHHHHHHhcCCCC
Confidence            88888888887777766667764221         22110        00    01123578999999999999954322


Q ss_pred             HHHhc-cHHHHHHHHHhc
Q 019312          217 DMLES-GMFEELAEFFDS  233 (343)
Q Consensus       217 ~Ml~~-GlleEv~~l~~~  233 (343)
                      -++.. ...+++.++++.
T Consensus       126 Pll~~~~~~~~l~~l~~~  143 (182)
T PRK13948        126 PLLQVEDPLGRIRTLLNE  143 (182)
T ss_pred             CCCCCCChHHHHHHHHHH
Confidence            22221 123555555543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.72  E-value=1.5e-08  Score=105.48  Aligned_cols=73  Identities=22%  Similarity=0.311  Sum_probs=62.9

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ..++++++.+|+|.|+.+.+ +++++++++          ++|+.++|+||||||||||++.|.+.+++.    .|++.+
T Consensus       324 ~~~~~I~f~~vsf~y~~~~~-vl~~is~~i----------~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~----~G~I~i  388 (567)
T COG1132         324 DTIGSIEFENVSFSYPGKKP-VLKDISFSI----------EPGEKVAIVGPSGSGKSTLIKLLLRLYDPT----SGEILI  388 (567)
T ss_pred             CCCCeEEEEEEEEEcCCCCc-cccCceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCeEEE
Confidence            45577999999999997434 899999998          999999999999999999999999999854    688854


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                       .|.||..-
T Consensus       389 -dg~dI~~i  396 (567)
T COG1132         389 -DGIDIRDI  396 (567)
T ss_pred             -CCEehhhc
Confidence             78888643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.72  E-value=1.9e-08  Score=103.57  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .++++.+|+|.||...+.+++++++++          ++|+.++|+||||||||||++.|++..+|.    .|++ .+.|
T Consensus       319 ~~i~~~~v~f~y~~~~~~il~~i~l~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~I-~~~g  383 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRRAPALRPVSFTV----------PPGERVALVGPSGAGKSTLLNLLLGFVDPT----EGSI-AVNG  383 (529)
T ss_pred             CeEEEEEEEEECCCCCcccccceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECC
Confidence            479999999999976556899999998          999999999999999999999999999865    6888 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus       384 ~~i~~  388 (529)
T TIGR02857       384 VPLAD  388 (529)
T ss_pred             Eehhh
Confidence            77753

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.72  E-value=1.4e-08  Score=92.28  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~-~~~l~~~sl~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~i   65 (214)
T cd03292           2 EFINVTKTYPNG-TAALDGINISI----------SAGEFVFLVGPSGAGKSTLLKLIYKEELPT----SGTI-RVNGQDV   65 (214)
T ss_pred             EEEEEEEEeCCC-ceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence            567788888644 34899999998          889999999999999999999999998754    6888 4777777


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      .+
T Consensus        66 ~~   67 (214)
T cd03292          66 SD   67 (214)
T ss_pred             cc
Confidence            54

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.72  E-value=1.9e-08  Score=105.00  Aligned_cols=72  Identities=22%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ....+++.+|+|.|+...+.+++++++++          ++|+.++|+||||||||||++.|++..+|.    .|++ .+
T Consensus       335 ~~~~i~~~~v~f~y~~~~~~il~~i~~~i----------~~G~~~aivG~sGsGKSTL~~ll~g~~~p~----~G~I-~i  399 (574)
T PRK11160        335 DQVSLTLNNVSFTYPDQPQPVLKGLSLQI----------KAGEKVALLGRTGCGKSTLLQLLTRAWDPQ----QGEI-LL  399 (574)
T ss_pred             CCCeEEEEEEEEECCCCCCcceecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EE
Confidence            34679999999999876555899999998          899999999999999999999999999865    7888 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus       400 ~g~~i~~  406 (574)
T PRK11160        400 NGQPIAD  406 (574)
T ss_pred             CCEEhhh
Confidence            8887754

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1.6e-08  Score=96.45  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+...+.+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         6 l~~~~l~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~----~G~i-~~~g~~   70 (279)
T PRK13635          6 IRVEHISFRYPDAATYALKDVSFSV----------YEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTI-TVGGMV   70 (279)
T ss_pred             EEEEEEEEEeCCCCccceeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EECCEE
Confidence            7889999999754444899999998          899999999999999999999999998854    7888 488988


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +.+.
T Consensus        71 i~~~   74 (279)
T PRK13635         71 LSEE   74 (279)
T ss_pred             CCcC
Confidence            8653

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.72  E-value=1.7e-08  Score=92.24  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g   66 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSI----------GKGEIVAIVGSSGSGKSTLLHLLGGLDNPT----SGEVL-FNG   66 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-ECC
Confidence            46778888886432  34899999998          899999999999999999999999998754    78884 778


Q ss_pred             ccccCC
Q 019312          100 LDITTN  105 (343)
Q Consensus       100 l~I~T~  105 (343)
                      .++.+.
T Consensus        67 ~~~~~~   72 (221)
T TIGR02211        67 QSLSKL   72 (221)
T ss_pred             EEhhhc
Confidence            777543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.71  E-value=1.8e-08  Score=89.47  Aligned_cols=67  Identities=19%  Similarity=0.356  Sum_probs=55.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+...+.+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.+
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g~~   65 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLEL----------KQGEKIALLGRSGSGKSTLLQLLTGDLKPQ----QGEI-TLDGVP   65 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCEE-EECCEE
Confidence            3567888888755345899999998          899999999999999999999999998754    7888 477776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (178)
T cd03247          66 VS   67 (178)
T ss_pred             HH
Confidence            64

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.71  E-value=2.2e-08  Score=107.06  Aligned_cols=72  Identities=17%  Similarity=0.305  Sum_probs=62.3

Q ss_pred             CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ...++++.+|+|.||.++ +.+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++ .
T Consensus       475 ~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~----~G~I-~  539 (711)
T TIGR00958       475 LEGLIEFQDVSFSYPNRPDVPVLKGLTFTL----------HPGEVVALVGPSGSGKSTVAALLQNLYQPT----GGQV-L  539 (711)
T ss_pred             CCCeEEEEEEEEECCCCCCCccccCceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCEE-E
Confidence            346799999999999653 45899999998          999999999999999999999999999865    6888 4


Q ss_pred             EecccccC
Q 019312           97 YKGLDITT  104 (343)
Q Consensus        97 y~gl~I~T  104 (343)
                      +.|.|+..
T Consensus       540 idg~~i~~  547 (711)
T TIGR00958       540 LDGVPLVQ  547 (711)
T ss_pred             ECCEEHHh
Confidence            78887754

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=1.5e-08  Score=103.34  Aligned_cols=72  Identities=22%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ...+|++.+|+|.|.+.++ +|+++++++          ++|+-++|+|+|||||||+++.|.+.+. .    .|++ ..
T Consensus       348 ~~~~I~F~dV~f~y~~k~~-iL~gvsf~I----------~kGekVaIvG~nGsGKSTilr~LlrF~d-~----sG~I-~I  410 (591)
T KOG0057|consen  348 FGGSIEFDDVHFSYGPKRK-VLKGVSFTI----------PKGEKVAIVGSNGSGKSTILRLLLRFFD-Y----SGSI-LI  410 (591)
T ss_pred             CCCcEEEEeeEEEeCCCCc-eecceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHHHhc-c----CCcE-EE
Confidence            3467999999999997766 899999998          9999999999999999999999999998 5    7999 58


Q ss_pred             ecccccCCC
Q 019312           98 KGLDITTNK  106 (343)
Q Consensus        98 ~gl~I~T~k  106 (343)
                      .|.++.+..
T Consensus       411 dG~dik~~~  419 (591)
T KOG0057|consen  411 DGQDIKEVS  419 (591)
T ss_pred             CCeeHhhhC
Confidence            899986544

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.70  E-value=1.6e-08  Score=95.94  Aligned_cols=70  Identities=19%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      +|+.+++.++++.|+... .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+
T Consensus         3 ~~~~l~~~~l~~~~~~~~-~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~   66 (272)
T PRK15056          3 QQAGIVVNDVTVTWRNGH-TALRDASFTV----------PGGSIAALVGVNGSGKSTLFKALMGFVRLA----SGKI-SI   66 (272)
T ss_pred             hhceEEEEeEEEEecCCc-EEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EE
Confidence            466789999999997433 3899999998          899999999999999999999999998754    6877 37


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus        67 ~g~~i~   72 (272)
T PRK15056         67 LGQPTR   72 (272)
T ss_pred             CCEEhH
Confidence            777663

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1.9e-08  Score=92.97  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|
T Consensus         6 l~~~~l~~~~~~~~~~~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g   70 (233)
T PRK11629          6 LQCDNLCKRYQEGSVQTDVLHNVSFSI----------GEGEMMAIVGSSGSGKSTLLHLLGGLDTPT----SGDV-IFNG   70 (233)
T ss_pred             EEEEeEEEEcCCCCcceeeEEeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence            67889999997532  34899999998          889999999999999999999999998754    6888 4777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        71 ~~i~~   75 (233)
T PRK11629         71 QPMSK   75 (233)
T ss_pred             EEcCc
Confidence            77653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.70  E-value=2.2e-08  Score=91.71  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=56.3

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...  +.+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g   66 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSI----------KKGETLGLVGESGSGKSTLARAILGLLKPT----SGSII-FDG   66 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECC
Confidence            46788999886542  24899999998          899999999999999999999999998754    78884 777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        67 ~~~~~   71 (228)
T cd03257          67 KDLLK   71 (228)
T ss_pred             EEccc
Confidence            77754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.70  E-value=4.2e-08  Score=91.43  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=59.1

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ++..++++.|+.+.  -.+|+++++++          .+|+.++|+|+||||||||++.|++...|.    .|++ .+.|
T Consensus         4 l~v~nl~~~y~~~~~~~~~l~~VS~~i----------~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~----~G~I-~~~G   68 (252)
T COG1124           4 LSVRNLSIVYGGGKFAFHALNNVSLEI----------ERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSI-LLDG   68 (252)
T ss_pred             EEEeceEEEecCCcchhhhhcceeEEe----------cCCCEEEEEcCCCCCHHHHHHHHhcccCCC----CceE-EECC
Confidence            56677888887665  12899999998          999999999999999999999999998865    7999 5888


Q ss_pred             ccccCCCCC
Q 019312          100 LDITTNKIP  108 (343)
Q Consensus       100 l~I~T~kp~  108 (343)
                      .++...++.
T Consensus        69 ~~~~~~~~~   77 (252)
T COG1124          69 KPLAPKKRA   77 (252)
T ss_pred             cccCccccc
Confidence            776654443

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.70  E-value=2.2e-08  Score=91.43  Aligned_cols=68  Identities=24%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~   66 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSI----------KPGEKVGIVGRTGSGKSSLLLALFRLVELS----SGSI-LIDGV   66 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEE----------CCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CCEE-EECCE
Confidence            47788999999865445899999998          889999999999999999999999988754    6887 46776


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~~~   69 (221)
T cd03244          67 DIS   69 (221)
T ss_pred             EhH
Confidence            653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.70  E-value=2.5e-08  Score=90.42  Aligned_cols=72  Identities=19%  Similarity=0.211  Sum_probs=60.0

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |.+..+++.++++.|+......++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .
T Consensus         2 ~~~~~l~~~~l~~~~~~~~~~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~   66 (207)
T cd03369           2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKV----------KAGEKIGIVGRTGAGKSTLILALFRFLEAE----EGKI-E   66 (207)
T ss_pred             CCCCeEEEEEEEEEeCCCCcccccCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCeE-E
Confidence            344668899999999754334899999998          899999999999999999999999998754    6888 4


Q ss_pred             Eeccccc
Q 019312           97 YKGLDIT  103 (343)
Q Consensus        97 y~gl~I~  103 (343)
                      +.|.++.
T Consensus        67 ~~g~~~~   73 (207)
T cd03369          67 IDGIDIS   73 (207)
T ss_pred             ECCEEhH
Confidence            7777764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.70  E-value=2.5e-08  Score=92.58  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=60.3

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+++-.||.+.. .|.++++.+          ++|++++|+||||||||||+++|++..++.    .|++ .+.|
T Consensus         2 ~~i~~~nl~k~yp~~~~-aL~~Vnl~I----------~~GE~VaiIG~SGaGKSTLLR~lngl~d~t----~G~i-~~~g   65 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQ-ALKDVNLEI----------NQGEMVAIIGPSGAGKSTLLRSLNGLVDPT----SGEI-LFNG   65 (258)
T ss_pred             ceEEEeeeeeecCCCce-eeeeEeEEe----------CCCcEEEEECCCCCcHHHHHHHHhcccCCC----cceE-Eecc
Confidence            35788999999995544 899999998          999999999999999999999999987754    7888 4778


Q ss_pred             ccccCCC
Q 019312          100 LDITTNK  106 (343)
Q Consensus       100 l~I~T~k  106 (343)
                      .++...+
T Consensus        66 ~~i~~~~   72 (258)
T COG3638          66 VQITKLK   72 (258)
T ss_pred             cchhccc
Confidence            8876543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.70  E-value=1.9e-08  Score=91.20  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +.+.+++|.|+.+  ...+++++++++          .+|++++|+||||||||||++.|++..++. -.+.|.+ .+.|
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~~~~G~i-~i~g   71 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVV----------KPGEMVLVLGRPGSGCSTLLKALANRTEGN-VSVEGDI-HYNG   71 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEE----------CCCcEEEEECCCCCCHHHHHHHhcccCCCC-CCcceEE-EECC
Confidence            5688999999975  345899999998          899999999999999999999999998621 1136777 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++.+
T Consensus        72 ~~~~~   76 (202)
T cd03233          72 IPYKE   76 (202)
T ss_pred             EECcc
Confidence            77754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.69  E-value=1.6e-08  Score=93.46  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      +..+++-.|-.  -.+|+++++++          .+|++++|+||||+|||||++++++..++.    .|++ .|.|.||
T Consensus         5 ~v~~l~~~YG~--~~~L~gvsl~v----------~~Geiv~llG~NGaGKTTlLkti~Gl~~~~----~G~I-~~~G~di   67 (237)
T COG0410           5 EVENLSAGYGK--IQALRGVSLEV----------ERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRI-IFDGEDI   67 (237)
T ss_pred             eEEeEeecccc--eeEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeeE-EECCeec
Confidence            45566666654  44899999998          999999999999999999999999999843    7999 6999999


Q ss_pred             cCCCCCccccccc
Q 019312          103 TTNKIPSHKRHNV  115 (343)
Q Consensus       103 ~T~kp~~~e~~~i  115 (343)
                      +..+|...-+.|+
T Consensus        68 t~~p~~~r~r~Gi   80 (237)
T COG0410          68 TGLPPHERARLGI   80 (237)
T ss_pred             CCCCHHHHHhCCe
Confidence            8766544444555

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.69  E-value=2.1e-08  Score=91.13  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.++
T Consensus         2 ~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~~   64 (213)
T cd03259           2 ELKGLSKTYGS--VRALDDLSLTV----------EPGEFLALLGPSGCGKTTLLRLIAGLERPD----SGEIL-IDGRDV   64 (213)
T ss_pred             eeeeeEEEeCC--eeeecceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE-ECCEEc
Confidence            56778888864  34899999998          899999999999999999999999998754    78884 778777


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (213)
T cd03259          65 TG   66 (213)
T ss_pred             Cc
Confidence            53

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.69  E-value=2e-08  Score=93.08  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         3 l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   65 (239)
T cd03296           3 IEVRNVSKRFGD--FVALDDVSLDI----------PSGELVALLGPSGSGKTTLLRLIAGLERPD----SGTI-LFGGED   65 (239)
T ss_pred             EEEEeEEEEECC--EEeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence            678899999874  34899999998          899999999999999999999999998754    6888 478877


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (239)
T cd03296          66 ATD   68 (239)
T ss_pred             CCc
Confidence            653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.69  E-value=1.9e-08  Score=107.04  Aligned_cols=71  Identities=23%  Similarity=0.327  Sum_probs=62.2

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|+|+...+.+++++++++          ++|+.++|+|+||||||||++.|++.++|.    .|++ .+.
T Consensus       461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i----------~~G~~iaIvG~sGsGKSTLlklL~gl~~p~----~G~I-~id  525 (694)
T TIGR03375       461 QGEIEFRNVSFAYPGQETPALDNVSLTI----------RPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSV-LLD  525 (694)
T ss_pred             cceEEEEEEEEEeCCCCccceeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EEC
Confidence            4679999999999876666999999998          899999999999999999999999999865    6888 477


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.|+..
T Consensus       526 g~~l~~  531 (694)
T TIGR03375       526 GVDIRQ  531 (694)
T ss_pred             CEEhhh
Confidence            887753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.68  E-value=2.3e-08  Score=92.44  Aligned_cols=67  Identities=19%  Similarity=0.266  Sum_probs=55.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.+...+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   65 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRI----------KPGEVVGIVGRSGSGKSTLTKLIQRFYVPE----NGRV-LVDGHD   65 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECCee
Confidence            3567888888654445899999998          899999999999999999999999998754    6888 477777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (237)
T cd03252          66 LA   67 (237)
T ss_pred             hH
Confidence            64

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.68  E-value=2.5e-08  Score=115.02  Aligned_cols=74  Identities=16%  Similarity=0.078  Sum_probs=65.5

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |.++.+++.+|+|+|++..+.+|+++++++          ++|+.++|+|+||||||||+..|.+.+.|.    .|++ .
T Consensus      1233 p~~g~I~f~nVsf~Y~~~~~~VL~~is~~I----------~~GekVaIVGrSGSGKSTLl~lL~rl~~p~----~G~I-~ 1297 (1622)
T PLN03130       1233 PSSGSIKFEDVVLRYRPELPPVLHGLSFEI----------SPSEKVGIVGRTGAGKSSMLNALFRIVELE----RGRI-L 1297 (1622)
T ss_pred             CCCCcEEEEEEEEEeCCCCCceecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCcCCCC----CceE-E
Confidence            456789999999999877667999999998          999999999999999999999999998854    6888 5


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.||.+-
T Consensus      1298 IDG~dI~~i 1306 (1622)
T PLN03130       1298 IDGCDISKF 1306 (1622)
T ss_pred             ECCEecccC
Confidence            889998643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=3e-08  Score=92.76  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.+++..|..  -.+++++++++          .+|++++|+||||||||||.+.+|+...|.    .|.+ ...|.+
T Consensus         4 l~i~~v~~~f~~--~~vl~~i~L~v----------~~GEfvsilGpSGcGKSTLLriiAGL~~p~----~G~V-~~~g~~   66 (248)
T COG1116           4 LEIEGVSKSFGG--VEVLEDINLSV----------EKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEV-LLDGRP   66 (248)
T ss_pred             EEEEeeEEEeCc--eEEeccceeEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCcc
Confidence            456677666665  55899999998          999999999999999999999999999865    6888 477777


Q ss_pred             c
Q 019312          102 I  102 (343)
Q Consensus       102 I  102 (343)
                      +
T Consensus        67 v   67 (248)
T COG1116          67 V   67 (248)
T ss_pred             c
Confidence            7

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.67  E-value=2.8e-08  Score=90.61  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=55.7

Q ss_pred             eeecccCCcCCcccc--cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRRR--SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...+  .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g   66 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTV----------KPGEVTGLLGPNGAGKTTTLRMLAGLLEPD----AGFA-TVDG   66 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----CceE-EECC
Confidence            467788888875421  5899999998          889999999999999999999999998754    6888 4777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        67 ~~~~   70 (218)
T cd03266          67 FDVV   70 (218)
T ss_pred             EEcc
Confidence            7765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.67  E-value=2.4e-08  Score=95.33  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.+.+.+++++++++          .+|++++|+||||||||||++.|++.++ .    .|++ .+.|.
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I----------~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~----~G~I-~i~g~   65 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSI----------SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T----EGDI-QIDGV   65 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhhhcC-C----CcEE-EECCE
Confidence            57899999999866566999999998          9999999999999999999999999986 3    6888 48888


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++.+
T Consensus        66 ~i~~   69 (275)
T cd03289          66 SWNS   69 (275)
T ss_pred             Ehhh
Confidence            8754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PLN03232 ABC transporter C family member; Provisional

Probab=98.67  E-value=2.5e-08  Score=114.38  Aligned_cols=74  Identities=12%  Similarity=0.034  Sum_probs=65.2

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |.++.+++.+|+|+|+++.+.+|+++++++          ++|+.++|+|+||||||||+..|.+.+.|.    .|++ .
T Consensus      1230 p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I----------~~GekvaIVG~SGSGKSTL~~lL~rl~~p~----~G~I-~ 1294 (1495)
T PLN03232       1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFV----------SPSEKVGVVGRTGAGKSSMLNALFRIVELE----KGRI-M 1294 (1495)
T ss_pred             CCCCcEEEEEEEEEECCCCCcccccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CceE-E
Confidence            455789999999999877667999999998          999999999999999999999999998854    7888 5


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.||.+-
T Consensus      1295 IdG~di~~i 1303 (1495)
T PLN03232       1295 IDDCDVAKF 1303 (1495)
T ss_pred             ECCEEhhhC
Confidence            889988643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.67  E-value=2.8e-08  Score=92.06  Aligned_cols=67  Identities=24%  Similarity=0.329  Sum_probs=55.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|... ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~-~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   65 (243)
T TIGR02315         2 LEVENLSKVYPNG-KQALKNINLNI----------NPGEFVAIIGPSGAGKSTLLRCINRLVEPS----SGSI-LLEGTD   65 (243)
T ss_pred             eEEEeeeeecCCC-cceeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ccEE-EECCEE
Confidence            4677888888633 34899999998          899999999999999999999999998754    6888 477777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (243)
T TIGR02315        66 ITK   68 (243)
T ss_pred             hhh
Confidence            653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.67  E-value=3.2e-08  Score=91.24  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g   66 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSV----------PKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSV-LVDG   66 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECC
Confidence            46788888887531  24899999998          899999999999999999999999998854    7888 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        67 ~~~~~   71 (233)
T cd03258          67 TDLTL   71 (233)
T ss_pred             EEccc
Confidence            77754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.67  E-value=3.1e-08  Score=87.56  Aligned_cols=67  Identities=22%  Similarity=0.345  Sum_probs=55.4

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+......++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~l~~~~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~-~~g~~~   66 (173)
T cd03246           2 EVENVSFRYPGAEPPVLRNVSFSI----------EPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVR-LDGADI   66 (173)
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCeEE-ECCEEc
Confidence            567788888754444899999998          889999999999999999999999998754    68884 777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        67 ~~   68 (173)
T cd03246          67 SQ   68 (173)
T ss_pred             cc
Confidence            53

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.67  E-value=2.6e-08  Score=91.53  Aligned_cols=68  Identities=13%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC---CCceecCCceE
Q 019312           21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF---PSEIINSDKMQ   95 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~---~~eIIs~Ds~q   95 (343)
                      -+++.+|+|.|+...  ..+++++++++          .+|++++|+||||||||||++.|++.++   +.    .|++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~----~G~i-   67 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHV----------ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT----SGQI-   67 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEE----------cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC----ceEE-
Confidence            457899999998762  55899999998          8999999999999999999999999876   33    6777 


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                      .+.|.++.
T Consensus        68 ~~~g~~~~   75 (226)
T cd03234          68 LFNGQPRK   75 (226)
T ss_pred             EECCEECC
Confidence            46776663

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.66  E-value=2.8e-08  Score=106.01  Aligned_cols=70  Identities=17%  Similarity=0.202  Sum_probs=61.2

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+.. +.+++++++++          ++|+.++|+||||||||||++.|++.+.|.    .|++ .+.
T Consensus       471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i----------~~G~~vaIvG~SGsGKSTLlklL~gl~~p~----~G~I-~id  534 (708)
T TIGR01193       471 NGDIVINDVSYSYGYG-SNILSDISLTI----------KMNSKTTIVGMSGSGKSTLAKLLVGFFQAR----SGEI-LLN  534 (708)
T ss_pred             CCcEEEEEEEEEcCCC-CcceeceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCCC----CcEE-EEC
Confidence            4679999999999854 45899999998          999999999999999999999999999865    6888 488


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.|+..
T Consensus       535 g~~i~~  540 (708)
T TIGR01193       535 GFSLKD  540 (708)
T ss_pred             CEEHHH
Confidence            888753

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.66  E-value=3.5e-08  Score=89.54  Aligned_cols=64  Identities=25%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++.+++.    .|.+ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~~s~~i----------~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   64 (213)
T cd03262           2 EIKNLHKSFGD--FHVLKGIDLTV----------KKGEVVVIIGPSGSGKSTLLRCINLLEEPD----SGTI-IIDGLKL   64 (213)
T ss_pred             EEEEEEEEECC--eEeecCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEEC
Confidence            56788888864  23899999998          899999999999999999999999998754    6888 4777776


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (213)
T cd03262          65 T   65 (213)
T ss_pred             C
Confidence            4

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.66  E-value=3.2e-08  Score=93.00  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+..|.  ...+++++++++          .+|.+++++|||||||||+++++.+...|.    .|++ .+.|.+
T Consensus         2 I~~~nvsk~y~--~~~av~~v~l~I----------~~gef~vliGpSGsGKTTtLkMINrLiept----~G~I-~i~g~~   64 (309)
T COG1125           2 IEFENVSKRYG--NKKAVDDVNLTI----------EEGEFLVLIGPSGSGKTTTLKMINRLIEPT----SGEI-LIDGED   64 (309)
T ss_pred             ceeeeeehhcC--CceeeeeeeEEe----------cCCeEEEEECCCCCcHHHHHHHHhcccCCC----CceE-EECCee
Confidence            57899999998  445789999998          899999999999999999999999999876    7888 578888


Q ss_pred             ccCCC
Q 019312          102 ITTNK  106 (343)
Q Consensus       102 I~T~k  106 (343)
                      |.+..
T Consensus        65 i~~~d   69 (309)
T COG1125          65 ISDLD   69 (309)
T ss_pred             cccCC
Confidence            86543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=2.7e-08  Score=95.22  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=57.4

Q ss_pred             eeecccCCcCCcccc---cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRRR---SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.+++|.|+...+   .+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~   66 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEV----------KKGSYTALIGHTGSGKSTLLQHLNGLLQPT----EGKV-TVG   66 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEE----------cCCCEEEEECCCCChHHHHHHHHhcCCCCC----CcEE-EEC
Confidence            578899999975432   4899999998          899999999999999999999999998754    7888 478


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        67 g~~i~   71 (288)
T PRK13643         67 DIVVS   71 (288)
T ss_pred             CEECc
Confidence            88874

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=2.8e-08  Score=95.03  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|+.+.   ..+|+++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~----~G~i-~~~   67 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEF----------EQGKYYAIVGQTGSGKSTLIQNINALLKPT----TGTV-TVD   67 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence            57788999987432   35999999998          899999999999999999999999998754    7888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        68 g~~i~~   73 (286)
T PRK13646         68 DITITH   73 (286)
T ss_pred             CEECcc
Confidence            888753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.66  E-value=2.4e-08  Score=92.11  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~~   64 (236)
T cd03219           2 EVRGLTKRFGG--LVALDDVSFSV----------RPGEIHGLIGPNGAGKTTLFNLISGFLRPT----SGSVL-FDGEDI   64 (236)
T ss_pred             eeeeeEEEECC--EEEecCceEEe----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CceEE-ECCEEC
Confidence            56788888863  34899999998          899999999999999999999999998754    68884 777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (236)
T cd03219          65 TG   66 (236)
T ss_pred             CC
Confidence            53

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.66  E-value=4.7e-08  Score=91.07  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +..|++.+|++.+-  ...+++++++++          .+|++++|+||||||||||++.+.+.+.|.    .|++ ...
T Consensus         6 ~~~I~vr~v~~~fG--~~~Ild~v~l~V----------~~Gei~~iiGgSGsGKStlLr~I~Gll~P~----~GeI-~i~   68 (263)
T COG1127           6 EPLIEVRGVTKSFG--DRVILDGVDLDV----------PRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEI-LID   68 (263)
T ss_pred             cceEEEeeeeeecC--CEEEecCceeee----------cCCcEEEEECCCCcCHHHHHHHHhccCCCC----CCeE-EEc
Confidence            56789999999985  455899999998          999999999999999999999999999876    7888 477


Q ss_pred             cccccCCCCCcccc------ccc---CccccccccCCC-cccChhhhhhhhhHHHHHHH
Q 019312           99 GLDITTNKIPSHKR------HNV---PHHLLGEFVPDD-VEFTPDDFRLQADNAISDII  147 (343)
Q Consensus        99 gl~I~T~kp~~~e~------~~i---~h~li~~~~~~~-~~~s~~~f~~~a~~~i~~i~  147 (343)
                      |.+|...  +.+++      -|+   ...|++.+...| +.|...++.+.-++.++++.
T Consensus        69 G~~i~~l--s~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv  125 (263)
T COG1127          69 GEDIPQL--SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV  125 (263)
T ss_pred             Ccchhcc--CHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH
Confidence            8887533  23332      233   235666665554 34555555555555565554

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.66  E-value=2.5e-08  Score=114.53  Aligned_cols=74  Identities=19%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |.++.+++.+|+|.|+.+.+.+|+++++++          ++|+.++|+|+||||||||+..|.+.+.+.    .|++ .
T Consensus      1280 p~~g~I~f~nVsf~Y~~~~~~vL~~is~~I----------~~GekiaIVGrTGsGKSTL~~lL~rl~~~~----~G~I-~ 1344 (1522)
T TIGR00957      1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTI----------HGGEKVGIVGRTGAGKSSLTLGLFRINESA----EGEI-I 1344 (1522)
T ss_pred             CCCCcEEEEEEEEEeCCCCcccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCccCC----CCeE-E
Confidence            456789999999999987667999999998          999999999999999999999999998854    6888 5


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.||.+-
T Consensus      1345 IdG~dI~~i 1353 (1522)
T TIGR00957      1345 IDGLNIAKI 1353 (1522)
T ss_pred             ECCEEcccc
Confidence            889888643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.66  E-value=2.6e-08  Score=92.06  Aligned_cols=65  Identities=20%  Similarity=0.265  Sum_probs=54.0

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|..  ...++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~~   64 (235)
T cd03261           2 ELRGLTKSFGG--RTVLKGVDLDV----------RRGEILAIIGPSGSGKSTLLRLIVGLLRPD----SGEV-LIDGEDI   64 (235)
T ss_pred             eEEEEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEc
Confidence            46778888863  24899999998          899999999999999999999999998754    6888 4778776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (235)
T cd03261          65 SG   66 (235)
T ss_pred             cc
Confidence            53

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.66  E-value=3e-08  Score=91.62  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=54.3

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|... ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~-~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~   65 (241)
T cd03256           2 EVENLSKTYPNG-KKALKDVSLSI----------NPGEFVALIGPSGAGKSTLLRCLNGLVEPT----SGSV-LIDGTDI   65 (241)
T ss_pred             EEeeEEEecCCc-cEEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----CceE-EECCEec
Confidence            567788888642 34899999998          899999999999999999999999988754    6888 4778776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        66 ~~   67 (241)
T cd03256          66 NK   67 (241)
T ss_pred             cc
Confidence            53

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.65  E-value=1.9e-07  Score=83.36  Aligned_cols=36  Identities=28%  Similarity=0.551  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|++++|+|||||||||+++.|++.+. ...|+.|.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~~   37 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS-AKFIDGDDL   37 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC-CEEECCccc
Confidence            378999999999999999999999988 445555544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.65  E-value=5.2e-08  Score=90.40  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=47.9

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN  105 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~  105 (343)
                      -.+|+++++++          ++|++++|+||||||||||+..++....|.    .+.+ .+.|.++...
T Consensus        18 ~~~L~~v~l~i----------~~Ge~vaI~GpSGSGKSTLLniig~ld~pt----~G~v-~i~g~d~~~l   72 (226)
T COG1136          18 VEALKDVNLEI----------EAGEFVAIVGPSGSGKSTLLNLLGGLDKPT----SGEV-LINGKDLTKL   72 (226)
T ss_pred             eEecccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CceE-EECCEEcCcC
Confidence            34899999998          999999999999999999999999988754    7887 5888888654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.65  E-value=4.1e-08  Score=90.22  Aligned_cols=69  Identities=19%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -+++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~----~G~i~-~~   70 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVV----------KRGETIALIGESGSGKSTLLAILAGLDDGS----SGEVS-LV   70 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CeeEE-EC
Confidence            478899999987532  24899999998          899999999999999999999999998754    68884 77


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        71 g~~~~~   76 (228)
T PRK10584         71 GQPLHQ   76 (228)
T ss_pred             CEEccc
Confidence            777654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.65  E-value=3.3e-08  Score=89.78  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=53.7

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|...  ..++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~--~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~v-~~~g~~~   64 (213)
T cd03301           2 ELENVTKRFGNV--TALDDLNLDI----------ADGEFVVLLGPSGCGKTTTLRMIAGLEEPT----SGRI-YIGGRDV   64 (213)
T ss_pred             EEEeeEEEECCe--eeeeceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEC
Confidence            567788887642  4899999998          899999999999999999999999998754    6888 4778776


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (213)
T cd03301          65 T   65 (213)
T ss_pred             C
Confidence            4

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.65  E-value=3.4e-08  Score=91.70  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~-~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   65 (242)
T cd03295           2 EFENVTKRYGGG-KKAVNNLNLEI----------AKGEFLVLIGPSGSGKTTTMKMINRLIEPT----SGEI-FIDGEDI   65 (242)
T ss_pred             EEEEEEEEeCCc-ceEeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCeEc
Confidence            567888888753 34899999998          899999999999999999999999998754    6888 4778776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        66 ~~   67 (242)
T cd03295          66 RE   67 (242)
T ss_pred             Cc
Confidence            53

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.65  E-value=3.2e-08  Score=90.31  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         1 l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   63 (222)
T cd03224           1 LEVENLNAGYGKS--QILFGVSLTV----------PEGEIVALLGRNGAGKTTLLKTIMGLLPPR----SGSI-RFDGRD   63 (222)
T ss_pred             CEEeeEEeecCCe--eEeeeeeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence            3567888888642  3899999998          899999999999999999999999998754    6888 477766


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        64 ~~~   66 (222)
T cd03224          64 ITG   66 (222)
T ss_pred             cCC
Confidence            643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.65  E-value=3.5e-08  Score=89.68  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=54.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~-~~il~~is~~i----------~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~~   65 (214)
T TIGR02673         2 IEFHNVSKAYPGG-VAALHDVSLHI----------RKGEFLFLTGPSGAGKTTLLKLLYGALTPS----RGQV-RIAGED   65 (214)
T ss_pred             EEEEeeeEEeCCC-ceeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence            4577888888533 34899999998          899999999999999999999999998744    6888 467777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (214)
T TIGR02673        66 VNR   68 (214)
T ss_pred             ccc
Confidence            643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.64  E-value=3.1e-08  Score=89.84  Aligned_cols=65  Identities=29%  Similarity=0.382  Sum_probs=52.0

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++.
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i----------~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~   66 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTI----------KKGEFVLIVGPNGSGKSTLLRLLNGLLGPT----SGEV-LVDGKDLT   66 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCEEcc
Confidence            45667777542234899999998          889999999999999999999999988754    6888 47777664

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.64  E-value=3.4e-08  Score=86.72  Aligned_cols=66  Identities=15%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+..  .++.++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         1 l~~~~l~~~~~~~--~vl~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v-~~~g~~   63 (163)
T cd03216           1 LELRGITKRFGGV--KALDGVSLSV----------RRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEI-LVDGKE   63 (163)
T ss_pred             CEEEEEEEEECCe--EEEeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECCEE
Confidence            3567888888743  3899999998          899999999999999999999999998754    6877 467777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        64 ~~~   66 (163)
T cd03216          64 VSF   66 (163)
T ss_pred             CCc
Confidence            654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.64  E-value=4.1e-08  Score=86.60  Aligned_cols=66  Identities=26%  Similarity=0.389  Sum_probs=54.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+...+..++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i----------~~G~~~~l~G~nGsGKstLl~~i~G~~~~~----~G~i-~~~g~~~   66 (171)
T cd03228           2 EFKNVSFSYPGRPKPVLKDVSLTI----------KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEI-LIDGVDL   66 (171)
T ss_pred             EEEEEEEEcCCCCcccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CCEE-EECCEEh
Confidence            466777777654335899999998          899999999999999999999999998754    6888 4777776


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        67 ~   67 (171)
T cd03228          67 R   67 (171)
T ss_pred             h
Confidence            4

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=4e-08  Score=93.08  Aligned_cols=69  Identities=22%  Similarity=0.338  Sum_probs=58.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.+...+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~   71 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEI----------NEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEI-KIDGI   71 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCE
Confidence            47889999999754445899999998          899999999999999999999999998754    6888 47787


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        72 ~i~~   75 (271)
T PRK13632         72 TISK   75 (271)
T ss_pred             ecCc
Confidence            7753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.64  E-value=3.7e-08  Score=87.57  Aligned_cols=64  Identities=22%  Similarity=0.307  Sum_probs=54.1

Q ss_pred             cCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCC
Q 019312           30 LHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIP  108 (343)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~  108 (343)
                      +|.......|+++++++          .+|..++|+||||||||||.+.+|...+|.    .|.+ .++|.++.+.+|.
T Consensus        10 ~y~a~~a~il~~isl~v----------~~Ge~iaitGPSG~GKStllk~va~Lisp~----~G~l-~f~Ge~vs~~~pe   73 (223)
T COG4619          10 GYLAGDAKILNNISLSV----------RAGEFIAITGPSGCGKSTLLKIVASLISPT----SGTL-LFEGEDVSTLKPE   73 (223)
T ss_pred             HhhcCCCeeecceeeee----------cCCceEEEeCCCCccHHHHHHHHHhccCCC----CceE-EEcCccccccChH
Confidence            34444566899999998          899999999999999999999999998865    5666 5899999888773

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.7e-08  Score=92.63  Aligned_cols=87  Identities=14%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             ecccCCCCCCCCCCCc-cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312            4 FLFSPPTPACYHHQQQ-QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      -+|.||--.-.+.+-+ ..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236          7 TLMALPLLDVLNLSDEQTALEVRNLNLFYGD--KQALFDISMRI----------PKNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             eeeecccccccccCCCCcEEEEEEEEEEECC--eeEeeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4677777555555433 46899999999964  24899999998          89999999999999999999999998


Q ss_pred             cCCC-ceecCCceEEEeccccc
Q 019312           83 FFPS-EIINSDKMQVYKGLDIT  103 (343)
Q Consensus        83 ~~~~-eIIs~Ds~qvy~gl~I~  103 (343)
                      .++. .....|.+ .+.|.++.
T Consensus        75 ~~~~~~~~~~G~i-~i~g~~i~   95 (272)
T PRK14236         75 NDLVDNCRIEGEI-RLDGQNIY   95 (272)
T ss_pred             CCCccCCCCceEE-EECCEECc
Confidence            7521 01126777 47777764

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.64  E-value=4.2e-08  Score=101.73  Aligned_cols=69  Identities=22%  Similarity=0.315  Sum_probs=60.1

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .++++.+|+|.|+... .+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus       321 ~~i~~~~v~f~y~~~~-~~l~~i~~~i----------~~G~~~aivG~sGsGKSTL~~ll~g~~~~~----~G~i~-~~g  384 (547)
T PRK10522        321 QTLELRNVTFAYQDNG-FSVGPINLTI----------KRGELLFLIGGNGSGKSTLAMLLTGLYQPQ----SGEIL-LDG  384 (547)
T ss_pred             ceEEEEEEEEEeCCCC-eEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE-ECC
Confidence            5799999999998543 4899999998          899999999999999999999999998865    68884 778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++.+
T Consensus       385 ~~~~~  389 (547)
T PRK10522        385 KPVTA  389 (547)
T ss_pred             EECCC
Confidence            87754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.63  E-value=3.1e-08  Score=89.63  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=51.9

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.++.
T Consensus         2 ~~~l~~~~~~~-~~~l~~v~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~~~   65 (205)
T cd03226           2 IENISFSYKKG-TEILDDLSLDL----------YAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSIL-LNGKPIK   65 (205)
T ss_pred             cccEEEEeCCc-CceeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEEE-ECCEEhh
Confidence            45677777642 34899999998          899999999999999999999999998754    68773 6777663

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.63  E-value=3.4e-08  Score=90.32  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             eecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           23 SSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.++++.|+...  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++. +.|.
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~vs~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~   66 (220)
T cd03293           2 EVRNVSKTYGGGGGAVTALEDISLSV----------EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVL-VDGE   66 (220)
T ss_pred             eEEEEEEEcCCCCcceEEEeceeEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCE
Confidence            4667778776421  34899999998          899999999999999999999999988754    68884 7777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~~~   69 (220)
T cd03293          67 PVT   69 (220)
T ss_pred             ECc
Confidence            664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.63  E-value=3.7e-08  Score=90.21  Aligned_cols=66  Identities=21%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.. ...++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   65 (222)
T PRK10908          2 IRFEHVSKAYLGG-RQALQGVTFHM----------RPGEMAFLTGHSGAGKSTLLKLICGIERPS----AGKI-WFSGHD   65 (222)
T ss_pred             EEEEeeEEEecCC-CeEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence            4678888888533 34899999998          899999999999999999999999998754    6888 467776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 i~   67 (222)
T PRK10908         66 IT   67 (222)
T ss_pred             cc
Confidence            64

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=3.4e-08  Score=93.85  Aligned_cols=67  Identities=22%  Similarity=0.353  Sum_probs=56.4

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+... .+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~~-~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   65 (274)
T PRK13644          2 IRLENVSYSYPDGT-PALENINLVI----------KKGEYIGIIGKNGSGKSTLALHLNGLLRPQ----KGKV-LVSGID   65 (274)
T ss_pred             EEEEEEEEEcCCCC-ceeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EECCEE
Confidence            46778888886433 3899999998          899999999999999999999999998754    7888 478887


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (274)
T PRK13644         66 TGD   68 (274)
T ss_pred             CCc
Confidence            754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.63  E-value=5.2e-08  Score=100.92  Aligned_cols=71  Identities=21%  Similarity=0.366  Sum_probs=61.5

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+.+...+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++. +.
T Consensus       314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i~-~~  378 (544)
T TIGR01842       314 EGHLSVENVTIVPPGGKKPTLRGISFRL----------QAGEALAIIGPSGSGKSTLARLIVGIWPPT----SGSVR-LD  378 (544)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-EC
Confidence            4579999999999876556899999998          899999999999999999999999998865    68884 77


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++.+
T Consensus       379 g~~i~~  384 (544)
T TIGR01842       379 GADLKQ  384 (544)
T ss_pred             CEehhh
Confidence            777754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.63  E-value=4.8e-08  Score=89.15  Aligned_cols=68  Identities=25%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++++.++++.|+......+.++++++          .+|++++|+||||||||||++.|++..++.    .|++ .|.|.
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i----------~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~   66 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTI----------RAGEKVAIIGRVGSGKSTLLKLLAGLYKPT----SGSV-LLDGT   66 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCeE-EECCE
Confidence            46788888888653334899999998          899999999999999999999999988744    6888 47776


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~~~   69 (220)
T cd03245          67 DIR   69 (220)
T ss_pred             EhH
Confidence            654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.63  E-value=4.7e-08  Score=102.12  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.+|+|.|+.. +.+++++++++          ++|+.++|+|+||||||||++.|++.++|.    .|++ .+.
T Consensus       338 ~~~i~~~~v~f~y~~~-~~il~~i~l~i----------~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~----~G~I-~id  401 (592)
T PRK10790        338 SGRIDIDNVSFAYRDD-NLVLQNINLSV----------PSRGFVALVGHTGSGKSTLASLLMGYYPLT----EGEI-RLD  401 (592)
T ss_pred             CCeEEEEEEEEEeCCC-CceeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CceE-EEC
Confidence            4679999999999854 34899999998          999999999999999999999999999865    6888 588


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       402 g~~i~~  407 (592)
T PRK10790        402 GRPLSS  407 (592)
T ss_pred             CEEhhh
Confidence            888753

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=4.4e-08  Score=93.34  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             ceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      -+++.++++.|+.. ...+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g   68 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHV----------KQGEWLSIIGHNGSGKSTTVRLIDGLLEAE----SGQI-IIDG   68 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECC
Confidence            47888999999743 234899999998          899999999999999999999999998754    7888 5788


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        69 ~~i~~   73 (279)
T PRK13650         69 DLLTE   73 (279)
T ss_pred             EECCc
Confidence            88753

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=4.4e-08  Score=93.73  Aligned_cols=68  Identities=24%  Similarity=0.325  Sum_probs=57.9

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|+...   ..+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i----------~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~----~G~i-~~~   67 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEI----------EDGEFVGLIGHTGSGKSTLIQHLNGLLKPT----SGKI-IID   67 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ccEE-EEC
Confidence            67889999997532   24899999998          899999999999999999999999998754    7888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        68 g~~~~~   73 (287)
T PRK13637         68 GVDITD   73 (287)
T ss_pred             CEECCC
Confidence            888764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=4e-08  Score=93.33  Aligned_cols=67  Identities=15%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|.+. +.|.
T Consensus         4 ~l~~~~l~~~~~~~-~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~   67 (274)
T PRK13647          4 IIEVEDLHFRYKDG-TKALKGLSLSI----------PEGSKTALLGPNGAGKSTLLLHLNGIYLPQ----RGRVK-VMGR   67 (274)
T ss_pred             eEEEEEEEEEeCCC-CeeeeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ceEEE-ECCE
Confidence            47889999998743 33899999998          899999999999999999999999998754    68884 7888


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        68 ~~~   70 (274)
T PRK13647         68 EVN   70 (274)
T ss_pred             ECC
Confidence            774

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.62  E-value=4.2e-08  Score=90.08  Aligned_cols=64  Identities=19%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc-----CCCceecCCceEEE
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF-----FPSEIINSDKMQVY   97 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~-----~~~eIIs~Ds~qvy   97 (343)
                      ++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++..     ++.    .|++ .+
T Consensus         2 ~~~~l~~~~~~~--~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~----~G~i-~~   64 (227)
T cd03260           2 ELRDLNVYYGDK--HALKDISLDI----------PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEV-LL   64 (227)
T ss_pred             EEEEEEEEcCCc--eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC----CeEE-EE
Confidence            567888888643  4899999998          899999999999999999999999998     543    6777 46


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus        65 ~g~~~~   70 (227)
T cd03260          65 DGKDIY   70 (227)
T ss_pred             CCEEhh
Confidence            776654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=4.1e-08  Score=96.41  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=57.5

Q ss_pred             eeecccCCcCCc--ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPK--RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+.  +...+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i----------~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~----~G~I-~~~g   66 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHI----------PAGEIFGVIGASGAGKSTLIRCINLLERPT----SGRV-LVDG   66 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECC
Confidence            467888888872  2234899999998          899999999999999999999999998754    7888 4888


Q ss_pred             ccccCC
Q 019312          100 LDITTN  105 (343)
Q Consensus       100 l~I~T~  105 (343)
                      .++...
T Consensus        67 ~~i~~~   72 (343)
T PRK11153         67 QDLTAL   72 (343)
T ss_pred             EECCcC
Confidence            887643

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=4.4e-08  Score=92.64  Aligned_cols=68  Identities=18%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .+.|.
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i----------~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~   71 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNI----------PKGQWTSIVGHNGSGKSTIAKLMIGIEKVK----SGEI-FYNNQ   71 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCE
Confidence            47889999999764344899999998          899999999999999999999999998754    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        72 ~~~   74 (269)
T PRK13648         72 AIT   74 (269)
T ss_pred             ECC
Confidence            774

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.62  E-value=2.5e-07  Score=80.52  Aligned_cols=116  Identities=17%  Similarity=0.307  Sum_probs=66.2

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhH
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADN  141 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~  141 (343)
                      |+|+||+||||||+++.|++.++ ..+|+.|.+..+.....        ...+.++.       ++   +...|.....+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~~~~~~~~~--------~~~~~~~~-------~~---~~~~~~~~~~~   61 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDLHPAANIEK--------MSAGIPLN-------DD---DRWPWLQNLND   61 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC-CeEEeCccccChHHHHH--------HHcCCCCC-------hh---hHHHHHHHHHH
Confidence            47899999999999999999998 88888888731111110        01111110       01   11234333444


Q ss_pred             HHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          142 AISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       142 ~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      .+......|+..|+.-| .+ -+....        .+.          ....++.++|++++.+++.+|+..|..
T Consensus        62 ~~~~~l~~~~~~Vi~~t-~~-~~~~r~--------~~~----------~~~~~~~~i~l~~~~e~~~~R~~~R~~  116 (163)
T TIGR01313        62 ASTAAAAKNKVGIITCS-AL-KRHYRD--------ILR----------EAEPNLHFIYLSGDKDVILERMKARKG  116 (163)
T ss_pred             HHHHHHhcCCCEEEEec-cc-HHHHHH--------HHH----------hcCCCEEEEEEeCCHHHHHHHHHhccC
Confidence            44445556665444333 22 111110        010          012346678999999999999999963

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.62  E-value=5e-08  Score=89.58  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++++.++++.|+... ..++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.
T Consensus         2 ~l~~~~l~~~~~~~~-~~l~~isl~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~   65 (229)
T cd03254           2 EIEFENVNFSYDEKK-PVLKDINFSI----------KPGETVAIVGPTGAGKTTLINLLMRFYDPQ----KGQI-LIDGI   65 (229)
T ss_pred             eEEEEEEEEecCCCC-ccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECCE
Confidence            577889999887432 3899999998          899999999999999999999999998754    6777 36666


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        66 ~~~   68 (229)
T cd03254          66 DIR   68 (229)
T ss_pred             eHH
Confidence            554

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.62  E-value=4.2e-08  Score=90.25  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~   64 (232)
T cd03218           2 RAENLSKRYGK--RKVVNGVSLSV----------KQGEIVGLLGPNGAGKTTTFYMIVGLVKPD----SGKI-LLDGQDI   64 (232)
T ss_pred             eEEEEEEEeCC--EEeeccceeEe----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEec
Confidence            56778888863  34899999998          889999999999999999999999998754    6888 4777766


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (232)
T cd03218          65 TK   66 (232)
T ss_pred             cc
Confidence            43

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.62  E-value=3.8e-08  Score=89.30  Aligned_cols=64  Identities=13%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~v~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~~   64 (210)
T cd03269           2 EVENVTKRFGR--VTALDDISFSV----------EKGEIFGLLGPNGAGKTTTIRMILGIILPD----SGEVL-FDGKPL   64 (210)
T ss_pred             EEEEEEEEECC--EEEEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCCch
Confidence            46677887763  34899999998          899999999999999999999999988754    68884 667665


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (210)
T cd03269          65 D   65 (210)
T ss_pred             h
Confidence            3

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.61  E-value=4.6e-08  Score=89.98  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   64 (230)
T TIGR03410         2 EVSNLNVYYGQS--HILRGVSLEV----------PKGEVTCVLGRNGVGKTTLLKTLMGLLPVK----SGSI-RLDGEDI   64 (230)
T ss_pred             EEEeEEEEeCCe--EEecceeeEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCEEC
Confidence            567888888642  4899999998          899999999999999999999999998754    6888 4777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (230)
T TIGR03410        65 TK   66 (230)
T ss_pred             CC
Confidence            54

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.61  E-value=3.9e-08  Score=89.45  Aligned_cols=62  Identities=18%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      +.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.++
T Consensus         2 ~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~~   63 (213)
T cd03235           2 VEDLTVSYGG--HPVLEDVSFEV----------KPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIR-VFGKPL   63 (213)
T ss_pred             cccceeEECC--EEeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CCEEE-ECCccH
Confidence            4577777764  23899999998          899999999999999999999999998754    68883 667655

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=6.1e-08  Score=92.50  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=58.2

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++.+.|.. -..|++ .+.|
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i----------~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~-g~~G~i-~i~g   71 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSI----------PRGSWTALIGHNGSGKSTISKLINGLLLPDD-NPNSKI-TVDG   71 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcccCCCC-CCCcEE-EECC
Confidence            457889999999754334899999998          8999999999999999999999999987431 001677 4788


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        72 ~~~~~   76 (282)
T PRK13640         72 ITLTA   76 (282)
T ss_pred             EECCc
Confidence            87753

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.61  E-value=6.6e-08  Score=100.51  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=60.3

Q ss_pred             ccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           19 QQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ...+++.+|+|.||... ..+++++++++          ++|+.++|+|+||||||||++.|++.++|.    .|.+ .+
T Consensus       335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i----------~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~----~G~I-~i  399 (576)
T TIGR02204       335 RGEIEFEQVNFAYPARPDQPALDGLNLTV----------RPGETVALVGPSGAGKSTLFQLLLRFYDPQ----SGRI-LL  399 (576)
T ss_pred             CceEEEEEEEEECCCCCCCccccceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCEE-EE
Confidence            35799999999998643 45899999998          999999999999999999999999999864    6777 47


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus       400 ~g~~i~  405 (576)
T TIGR02204       400 DGVDLR  405 (576)
T ss_pred             CCEEHH
Confidence            787775

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=4.7e-08  Score=92.89  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|+...   ..+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++. +.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~----~G~i~-~~   67 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTI----------EDGSYTAFIGHTGSGKSTIMQLLNGLHVPT----QGSVR-VD   67 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-EC
Confidence            57888999987532   24899999998          899999999999999999999999998754    68884 77


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        68 g~~i~~   73 (280)
T PRK13649         68 DTLITS   73 (280)
T ss_pred             CEEccc
Confidence            877754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.61  E-value=7e-08  Score=100.10  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=60.7

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.+|+|.|+......++++++++          ++|+.++|+|+||||||||++.|++..+|.    .|++ .+.
T Consensus       328 ~~~i~~~~v~f~y~~~~~~il~~inl~i----------~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~----~G~I-~i~  392 (571)
T TIGR02203       328 RGDVEFRNVTFRYPGRDRPALDSISLVI----------EPGETVALVGRSGSGKSTLVNLIPRFYEPD----SGQI-LLD  392 (571)
T ss_pred             CCeEEEEEEEEEcCCCCCccccCeeEEe----------cCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCeE-EEC
Confidence            4679999999999865445899999998          999999999999999999999999999855    6888 477


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus       393 g~~i~  397 (571)
T TIGR02203       393 GHDLA  397 (571)
T ss_pred             CEeHH
Confidence            77764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.61  E-value=4.6e-08  Score=88.18  Aligned_cols=68  Identities=24%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             ceeecccCCcCCcc----cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCce
Q 019312           21 HYSSFYSPFLHPKR----RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKM   94 (343)
Q Consensus        21 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~   94 (343)
                      .+++.++++.|+..    ...+++++++++          .+|++++|+||||||||||++.|++.+  ++.    .|++
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i----------~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~----~G~i   68 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA----------KPGELTAIMGPSGAGKSTLLNALAGRRTGLGV----SGEV   68 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----ceEE
Confidence            36788999999763    234899999998          899999999999999999999999998  644    6888


Q ss_pred             EEEeccccc
Q 019312           95 QVYKGLDIT  103 (343)
Q Consensus        95 qvy~gl~I~  103 (343)
                       .|.|.++.
T Consensus        69 -~~~g~~~~   76 (194)
T cd03213          69 -LINGRPLD   76 (194)
T ss_pred             -EECCEeCc
Confidence             47887775

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=5e-08  Score=90.71  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         4 l~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   66 (241)
T PRK14250          4 IEFKEVSYSSFG--KEILKDISVKF----------EGGAIYTIVGPSGAGKSTLIKLINRLIDPT----EGSI-LIDGVD   66 (241)
T ss_pred             EEEEeEEEEeCC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence            578888888863  24899999998          889999999999999999999999998754    6888 477777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        67 i~   68 (241)
T PRK14250         67 IK   68 (241)
T ss_pred             hh
Confidence            64

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.60  E-value=4.9e-08  Score=90.35  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~   64 (236)
T TIGR03864         2 LEVAGLSFAYGA--RRALDDVSFTV----------RPGEFVALLGPNGAGKSTLFSLLTRLYVAQ----EGQI-SVAGHD   64 (236)
T ss_pred             EEEEeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCEE
Confidence            457788888863  34899999998          899999999999999999999999998754    6888 477777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        65 i~~   67 (236)
T TIGR03864        65 LRR   67 (236)
T ss_pred             ccc
Confidence            643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.60  E-value=7.3e-08  Score=88.07  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.
T Consensus        11 ~l~~~~l~~~~~~~--~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~   73 (214)
T PRK13543         11 LLAAHALAFSRNEE--PVFGPLDFHV----------DAGEALLVQGDNGAGKTTLLRVLAGLLHVE----SGQI-QIDGK   73 (214)
T ss_pred             eEEEeeEEEecCCc--eeeecceEEE----------CCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----CeeE-EECCE
Confidence            47889999988642  3899999998          899999999999999999999999998754    6888 47777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        74 ~i~   76 (214)
T PRK13543         74 TAT   76 (214)
T ss_pred             Ecc
Confidence            764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=5.7e-08  Score=94.83  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+...  ..+++++++++          .+|++++|+|+||||||||++.|++.+++...+++|++ .|.|
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i-~~~G   72 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSV----------KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL-EFNG   72 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE-EECC
Confidence            56778888776532  34899999998          99999999999999999999999998863222347888 4889


Q ss_pred             ccccCC
Q 019312          100 LDITTN  105 (343)
Q Consensus       100 l~I~T~  105 (343)
                      .++...
T Consensus        73 ~~i~~~   78 (326)
T PRK11022         73 QDLQRI   78 (326)
T ss_pred             EECCcC
Confidence            888543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.60  E-value=6e-08  Score=89.15  Aligned_cols=67  Identities=21%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+++-.|-  .-.+|+++++++          .+|++++|+||||||||||+++|+.+-.    ++.|++ .+.|.+
T Consensus         3 i~i~~l~K~fg--~~~VLkgi~l~v----------~~Gevv~iiGpSGSGKSTlLRclN~LE~----~~~G~I-~i~g~~   65 (240)
T COG1126           3 IEIKNLSKSFG--DKEVLKGISLSV----------EKGEVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSI-TVDGED   65 (240)
T ss_pred             EEEEeeeEEeC--CeEEecCcceeE----------cCCCEEEEECCCCCCHHHHHHHHHCCcC----CCCceE-EECCEe
Confidence            34445544444  345899999998          9999999999999999999999997644    558888 478877


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        66 ~~~~   69 (240)
T COG1126          66 VGDK   69 (240)
T ss_pred             ccch
Confidence            7543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.60  E-value=5e-08  Score=86.63  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+++.    .|.+. +.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~i~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~~   64 (178)
T cd03229           2 ELKNVSKRYGQ--KTVLNDVSLNI----------EAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSIL-IDGEDL   64 (178)
T ss_pred             EEEEEEEEECC--eEEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEEc
Confidence            46677787764  23899999998          899999999999999999999999988754    68884 777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (178)
T cd03229          65 TD   66 (178)
T ss_pred             cc
Confidence            54

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.60  E-value=4.7e-08  Score=86.93  Aligned_cols=64  Identities=25%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++.
T Consensus         2 ~~~l~~~~~~--~~~l~~~~~~i----------~~G~~~~l~G~nGsGKStLl~~i~G~~~~~----~G~v-~~~g~~~~   64 (180)
T cd03214           2 VENLSVGYGG--RTVLDDLSLSI----------EAGEIVGILGPNGAGKSTLLKTLAGLLKPS----SGEI-LLDGKDLA   64 (180)
T ss_pred             eeEEEEEECC--eeeEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEECC
Confidence            5677777764  34899999998          899999999999999999999999998754    6888 47777765


Q ss_pred             C
Q 019312          104 T  104 (343)
Q Consensus       104 T  104 (343)
                      .
T Consensus        65 ~   65 (180)
T cd03214          65 S   65 (180)
T ss_pred             c
Confidence            3

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.60  E-value=5e-08  Score=90.43  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         3 i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~   65 (242)
T TIGR03411         3 LYLEGLSVSFDG--FKALNDLSLYV----------DPGELRVIIGPNGAGKTTMMDVITGKTRPD----EGSV-LFGGTD   65 (242)
T ss_pred             EEEEeeEEEcCC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCeE-EECCee
Confidence            567888988874  34899999998          899999999999999999999999998754    7888 477777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +.+
T Consensus        66 ~~~   68 (242)
T TIGR03411        66 LTG   68 (242)
T ss_pred             cCC
Confidence            654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=5.1e-08  Score=91.71  Aligned_cols=65  Identities=14%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   64 (255)
T PRK11248          2 LQISHLYADYGG--KPALEDINLTL----------ESGELLVVLGPSGCGKTTLLNLIAGFVPYQ----HGSI-TLDGKP   64 (255)
T ss_pred             EEEEEEEEEeCC--eeeEeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence            467788888864  34899999998          899999999999999999999999998754    6888 477877


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        65 ~~   66 (255)
T PRK11248         65 VE   66 (255)
T ss_pred             CC
Confidence            64

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=5.5e-08  Score=91.76  Aligned_cols=69  Identities=19%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.
T Consensus         9 ~~~l~i~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~   71 (265)
T PRK10575          9 DTTFALRNVSFRVPG--RTLLHPLSLTF----------PAGKVTGLIGHNGSGKSTLLKMLGRHQPPS----EGEI-LLD   71 (265)
T ss_pred             CceEEEeeEEEEECC--EEEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CCEE-EEC
Confidence            346889999999974  34899999998          899999999999999999999999988743    7888 477


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        72 g~~~~~   77 (265)
T PRK10575         72 AQPLES   77 (265)
T ss_pred             CEehhh
Confidence            877753

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=5.8e-08  Score=90.02  Aligned_cols=67  Identities=12%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~~sl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~   65 (241)
T PRK10895          3 TLTAKNLAKAYKG--RRVVEDVSLTV----------NSGEIVGLLGPNGAGKTTTFYMVVGIVPRD----AGNI-IIDDE   65 (241)
T ss_pred             eEEEeCcEEEeCC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence            3678899998864  34899999998          899999999999999999999999998754    6887 46777


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        66 ~~~~   69 (241)
T PRK10895         66 DISL   69 (241)
T ss_pred             ECCC
Confidence            7643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.60  E-value=5.7e-08  Score=93.95  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++. +.
T Consensus         5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i----------~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~----~G~v~-i~   67 (306)
T PRK13537          5 VAPIDFRNVEKRYGD--KLVVDGLSFHV----------QRGECFGLLGPNGAGKTTTLRMLLGLTHPD----AGSIS-LC   67 (306)
T ss_pred             CceEEEEeEEEEECC--eEEEecceEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEEE-EC
Confidence            356889999999974  34899999998          899999999999999999999999998754    68884 77


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        68 G~~~~~   73 (306)
T PRK13537         68 GEPVPS   73 (306)
T ss_pred             CEeccc
Confidence            888754

>PRK06217 hypothetical protein; Validated

Probab=98.60  E-value=4.4e-07  Score=81.01  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..|+|+|++||||||+++.|++.++ .++|+.|.+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~-~~~~~~D~~   35 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD-IPHLDTDDY   35 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC-CcEEEcCce
Confidence            3589999999999999999999998 889999988

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=5.8e-08  Score=92.35  Aligned_cols=67  Identities=16%  Similarity=0.255  Sum_probs=56.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+...+ +++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         4 l~~~~l~~~~~~~~~-~l~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   67 (277)
T PRK13652          4 IETRDLCYSYSGSKE-ALNNINFIA----------PRNSRIAVIGPNGAGKSTLFRHFNGILKPT----SGSV-LIRGEP   67 (277)
T ss_pred             EEEEEEEEEeCCCCc-eeeEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence            567899999964433 899999998          899999999999999999999999998754    7888 477887


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        68 ~~~   70 (277)
T PRK13652         68 ITK   70 (277)
T ss_pred             CCc
Confidence            753

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.60  E-value=5e-08  Score=89.22  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~~~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~~   64 (220)
T cd03265           2 EVENLVKKYGD--FEAVRGVSFRV----------RRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRA-TVAGHDV   64 (220)
T ss_pred             EEEEEEEEECC--EEeeeceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEec
Confidence            56677777753  34899999998          899999999999999999999999988754    6787 3667666


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (220)
T cd03265          65 V   65 (220)
T ss_pred             C
Confidence            4

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.60  E-value=6.3e-08  Score=90.95  Aligned_cols=71  Identities=23%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -+.+++.++++.|+.....+++++++++          .+|++++|+|+||||||||++.|++..++.    .|++ .+.
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~i~   81 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYI----------KPGQKVGICGRTGSGKSSLSLAFFRMVDIF----DGKI-VID   81 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcccCCC----CCeE-EEC
Confidence            3678899999999764445899999998          899999999999999999999999988754    7888 477


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        82 g~~i~~   87 (257)
T cd03288          82 GIDISK   87 (257)
T ss_pred             CEEhhh
Confidence            877653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.6e-08  Score=92.80  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=58.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.+. .+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.
T Consensus         5 ~l~~~~l~~~~~~~~-~~l~~vs~~i----------~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~----~G~i~-i~g~   68 (283)
T PRK13636          5 ILKVEELNYNYSDGT-HALKGININI----------KKGEVTAILGGNGAGKSTLFQNLNGILKPS----SGRIL-FDGK   68 (283)
T ss_pred             eEEEEeEEEEeCCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ccEEE-ECCE
Confidence            478999999997433 4899999998          899999999999999999999999998754    78884 8888


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        69 ~~~   71 (283)
T PRK13636         69 PID   71 (283)
T ss_pred             ECC
Confidence            874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=6e-08  Score=92.72  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             cceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           20 QHYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ..+++.++++.|+...   ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~   69 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTF----------KKNKVTCVIGTTGSGKSTMIQLTNGLIISE----TGQT-I   69 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-E
Confidence            5688999999997543   24899999998          899999999999999999999999998754    6888 4


Q ss_pred             Eeccccc
Q 019312           97 YKGLDIT  103 (343)
Q Consensus        97 y~gl~I~  103 (343)
                      +.|.++.
T Consensus        70 ~~g~~i~   76 (289)
T PRK13645         70 VGDYAIP   76 (289)
T ss_pred             ECCEEcc
Confidence            7787764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.59  E-value=7e-08  Score=102.85  Aligned_cols=71  Identities=18%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.+|+|.|+...+.+++++++++          ++|+.++|+|+||||||||++.|++...|.    .|++ .+.
T Consensus       453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i----------~~G~~vaivG~sGsGKSTL~~ll~g~~~p~----~G~I-~id  517 (694)
T TIGR01846       453 RGAITFENIRFRYAPDSPEVLSNLNLDI----------KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ----HGQV-LVD  517 (694)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceE-EEC
Confidence            4679999999999876666999999998          899999999999999999999999998865    6888 488


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       518 g~~i~~  523 (694)
T TIGR01846       518 GVDLAI  523 (694)
T ss_pred             CEehhh
Confidence            888753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.3e-08  Score=90.35  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=54.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.+
T Consensus         3 l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   65 (242)
T PRK11124          3 IQLNGINCFYGA--HQALFDITLDC----------PQGETLVLLGPSGAGKSSLLRVLNLLEMPR----SGTL-NIAGNH   65 (242)
T ss_pred             EEEEeeEEEECC--eeeEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEe
Confidence            567888998864  34899999998          899999999999999999999999998754    6888 477776


Q ss_pred             c
Q 019312          102 I  102 (343)
Q Consensus       102 I  102 (343)
                      +
T Consensus        66 ~   66 (242)
T PRK11124         66 F   66 (242)
T ss_pred             c
Confidence            5

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.5e-08  Score=93.19  Aligned_cols=68  Identities=22%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|+...   ..+|+++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~   67 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSI----------PSGSYVAIIGHTGSGKSTLLQHLNGLLQPT----SGTV-TIG   67 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EEC
Confidence            67889999997532   34899999998          899999999999999999999999998754    7888 488


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        68 g~~i~~   73 (290)
T PRK13634         68 ERVITA   73 (290)
T ss_pred             CEECcc
Confidence            888753

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.5e-08  Score=92.65  Aligned_cols=68  Identities=22%  Similarity=0.379  Sum_probs=57.5

Q ss_pred             eeecccCCcCCccc----ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           22 YSSFYSPFLHPKRR----RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        22 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      +++.++++.|+...    ..+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .+
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~i   69 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEV----------KKGEFLVILGRNGSGKSTIAKHMNALLIPS----EGKV-YV   69 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EE
Confidence            67889999997532    34999999998          899999999999999999999999998754    7888 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++.+
T Consensus        70 ~g~~i~~   76 (280)
T PRK13633         70 DGLDTSD   76 (280)
T ss_pred             CCEeccc
Confidence            7887754

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.6e-08  Score=94.02  Aligned_cols=66  Identities=15%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             eeecccCCcCCcccc---cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRRR---SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|+...+   .+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i----------~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~----~G~i~-~~   67 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEI----------NQGEFIAIIGQTGSGKTTFIEHLNALLLPD----TGTIE-WI   67 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEE----------eCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEEE-Ee
Confidence            678899999975432   4899999998          899999999999999999999999998865    68884 55


Q ss_pred             cccc
Q 019312           99 GLDI  102 (343)
Q Consensus        99 gl~I  102 (343)
                      |.++
T Consensus        68 g~~~   71 (305)
T PRK13651         68 FKDE   71 (305)
T ss_pred             ceec
Confidence            5544

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.8e-08  Score=92.27  Aligned_cols=66  Identities=21%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+... .+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .|.|.+
T Consensus         2 l~~~~l~~~~~~~~-~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~g~~   65 (275)
T PRK13639          2 LETRDLKYSYPDGT-EALKGINFKA----------EKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEV-LIKGEP   65 (275)
T ss_pred             EEEEEEEEEeCCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCEE
Confidence            46788999987433 4899999998          899999999999999999999999998754    7888 488887


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (275)
T PRK13639         66 IK   67 (275)
T ss_pred             Cc
Confidence            74

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.59  E-value=8.2e-08  Score=100.11  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=61.5

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+++|.|+.....+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++. +.
T Consensus       311 ~~~I~~~~v~~~y~~~~~~~l~~i~~~i----------~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~----~G~i~-~~  375 (569)
T PRK10789        311 RGELDVNIRQFTYPQTDHPALENVNFTL----------KPGQMLGICGPTGSGKSTLLSLIQRHFDVS----EGDIR-FH  375 (569)
T ss_pred             CCcEEEEEEEEECCCCCCccccCeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCEEE-EC
Confidence            4579999999999875555899999998          899999999999999999999999998865    68884 77


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       376 g~~~~~  381 (569)
T PRK10789        376 DIPLTK  381 (569)
T ss_pred             CEEHhh
Confidence            877754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.58  E-value=6.2e-08  Score=91.41  Aligned_cols=68  Identities=18%  Similarity=0.208  Sum_probs=56.6

Q ss_pred             eeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           22 YSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        22 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++.++++.|+..       ...+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i   68 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI----------EEGETVGLLGRSGCGKSTLARLLLGLEKPA----QGTV   68 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence            5678888888642       234899999998          899999999999999999999999998754    6888


Q ss_pred             EEEecccccC
Q 019312           95 QVYKGLDITT  104 (343)
Q Consensus        95 qvy~gl~I~T  104 (343)
                       .+.|.++..
T Consensus        69 -~~~g~~i~~   77 (265)
T TIGR02769        69 -SFRGQDLYQ   77 (265)
T ss_pred             -EECCEEccc
Confidence             478887754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.58  E-value=6.3e-08  Score=89.22  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+......++++++++          .+|++++|+||||||||||++.|++..+|.    .|.+ .+.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~   66 (234)
T cd03251           2 EFKNVTFRYPGDGPPVLRDISLDI----------PAGETVALVGPSGSGKSTLVNLIPRFYDVD----SGRI-LIDGHDV   66 (234)
T ss_pred             EEEEEEEEeCCCCccceeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccCC----CCEE-EECCEEh
Confidence            566777777644334899999998          899999999999999999999999998754    6888 4777766


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        67 ~   67 (234)
T cd03251          67 R   67 (234)
T ss_pred             h
Confidence            4

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.58  E-value=8.4e-08  Score=88.29  Aligned_cols=67  Identities=22%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.
T Consensus         7 ~i~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~   69 (225)
T PRK10247          7 LLQLQNVGYLAGD--AKILNNISFSL----------RAGEFKLITGPSGCGKSTLLKIVASLISPT----SGTLL-FEGE   69 (225)
T ss_pred             eEEEeccEEeeCC--ceeeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCeEE-ECCE
Confidence            4788899998863  23899999998          899999999999999999999999987644    68884 6776


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++.+
T Consensus        70 ~~~~   73 (225)
T PRK10247         70 DIST   73 (225)
T ss_pred             EcCc
Confidence            6643

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.57  E-value=7.6e-08  Score=88.31  Aligned_cols=69  Identities=17%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..+++.++++.|+... ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~   74 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTL----------HPGEVTALVGPSGSGKSTVVALLENFYQPQ----GGQV-LLD   74 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CcEE-EEC
Confidence            5688999999997532 34899999998          899999999999999999999999998754    6877 467


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        75 g~~~~   79 (226)
T cd03248          75 GKPIS   79 (226)
T ss_pred             CCchH
Confidence            76654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.57  E-value=6.7e-08  Score=100.86  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+.+. .+++++++++          ++|+.++|+||||||||||++.|++.+ |.    .|++ .+.
T Consensus       347 ~~~i~~~~vsf~~~~~~-~vL~~i~l~i----------~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~----~G~I-~i~  409 (588)
T PRK11174        347 PVTIEAEDLEILSPDGK-TLAGPLNFTL----------PAGQRIALVGPSGAGKTSLLNALLGFL-PY----QGSL-KIN  409 (588)
T ss_pred             CceEEEEeeEEeccCCC-eeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCC-CC----CcEE-EEC
Confidence            45799999998777554 4899999998          999999999999999999999999998 55    6888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.|+..
T Consensus       410 g~~i~~  415 (588)
T PRK11174        410 GIELRE  415 (588)
T ss_pred             CEeccc
Confidence            887754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.57  E-value=4.6e-08  Score=82.66  Aligned_cols=120  Identities=20%  Similarity=0.310  Sum_probs=69.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh-hhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP-DDFRLQA  139 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~-~~f~~~a  139 (343)
                      +|+++||+||||||+++.|++.++ ..+|+.|.+.  ..+.- +..++                ... .... ..+....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~~--~~~~~-~~~~~----------------~~~-~~~~~~~~~~~~   59 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-AVVISQDEIR--RRLAG-EDPPS----------------PSD-YIEAEERAYQIL   59 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-EEEEEHHHHH--HHHCC-SSSGC----------------CCC-CHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHHH--HHHcc-ccccc----------------chh-HHHHHHHHHHHH
Confidence            588999999999999999999998 8888888762  11110 00000                000 0000 1122233


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD  217 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~  217 (343)
                      ...+....+.|. ++|+-.|+++-...-.         +.      .+.....+.+.+++|+++.+.+.+|+..|...
T Consensus        60 ~~~~~~~l~~g~-~~vvd~~~~~~~~r~~---------~~------~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   60 NAAIRKALRNGN-SVVVDNTNLSREERAR---------LR------ELARKHGYPVRVVYLDAPEETLRERLAQRNRE  121 (143)
T ss_dssp             HHHHHHHHHTT--EEEEESS--SHHHHHH---------HH------HHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred             HHHHHHHHHcCC-CceeccCcCCHHHHHH---------HH------HHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence            345555555665 4666666554322110         00      01112245678899999999999999988765

...

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.57  E-value=7.1e-08  Score=89.20  Aligned_cols=66  Identities=24%  Similarity=0.344  Sum_probs=54.0

Q ss_pred             eecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           23 SSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        23 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++.++++.|+... ..+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .+.|.+
T Consensus         2 ~i~~l~~~~~~~~~~~~l~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~   66 (238)
T cd03249           2 EFKNVSFRYPSRPDVPILKGLSLTI----------PPGKTVALVGSSGCGKSTVVSLLERFYDPT----SGEI-LLDGVD   66 (238)
T ss_pred             eEEEEEEecCCCCCccceeceEEEe----------cCCCEEEEEeCCCCCHHHHHHHHhccCCCC----CCEE-EECCEe
Confidence            5677888886432 34889999998          899999999999999999999999998754    6888 477776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        67 ~~   68 (238)
T cd03249          67 IR   68 (238)
T ss_pred             hh
Confidence            64

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.57  E-value=8.3e-08  Score=86.31  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.+|.|.|-+-    +-..++++          ..+++++|+||||||||||...+|+...|.    .|.+ ...|.|
T Consensus         2 l~L~~V~~~y~~~----~~~fdl~v----------~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~----~G~i-~i~g~d   62 (231)
T COG3840           2 LALDDVRFSYGHL----PMRFDLTV----------PAGEIVAILGPSGAGKSTLLNLIAGFETPA----SGEI-LINGVD   62 (231)
T ss_pred             ccccceEEeeCcc----eEEEEEee----------cCCcEEEEECCCCccHHHHHHHHHhccCCC----CceE-EEcCee
Confidence            3467788888744    23555665          779999999999999999999999998776    7888 588999


Q ss_pred             ccCCCCCccccccc--CccccccccCCC
Q 019312          102 ITTNKIPSHKRHNV--PHHLLGEFVPDD  127 (343)
Q Consensus       102 I~T~kp~~~e~~~i--~h~li~~~~~~~  127 (343)
                      .+...|...-...+  .|.|+..+++.+
T Consensus        63 ~t~~~P~~RPVSmlFQEnNLFaHLtV~q   90 (231)
T COG3840          63 HTASPPAERPVSMLFQENNLFAHLTVAQ   90 (231)
T ss_pred             cCcCCcccCChhhhhhccccchhhhhhh
Confidence            98766653222222  567777776665

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=7.2e-08  Score=89.19  Aligned_cols=67  Identities=22%  Similarity=0.241  Sum_probs=56.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~   67 (237)
T PRK11614          5 MLSFDKVSAHYGK--IQALHEVSLHI----------NQGEIVTLIGANGAGKTTLLGTLCGDPRAT----SGRIV-FDGK   67 (237)
T ss_pred             EEEEEeEEEeeCC--ceeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CceEE-ECCE
Confidence            3778899998863  34899999998          899999999999999999999999998754    78884 7777


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++.+
T Consensus        68 ~~~~   71 (237)
T PRK11614         68 DITD   71 (237)
T ss_pred             ecCC
Confidence            7643

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.57  E-value=6.6e-08  Score=85.46  Aligned_cols=64  Identities=19%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~--~~l~~~~~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g~~~   64 (173)
T cd03230           2 EVRNLSKRYGKK--TALDDISLTV----------EKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEI-KVLGKDI   64 (173)
T ss_pred             EEEEEEEEECCe--eeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECCEEc
Confidence            456777777642  3899999998          889999999999999999999999998754    6888 4777776


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (173)
T cd03230          65 K   65 (173)
T ss_pred             c
Confidence            4

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=7.2e-08  Score=106.25  Aligned_cols=74  Identities=23%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ....+++.+|.|.||.++ -.+|+++++.+          +.|+.++|+|||||||||+...|.+.++|.    .|++ .
T Consensus       347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i----------~~G~~valVG~SGsGKST~i~LL~RfydP~----~G~V-~  411 (1228)
T KOG0055|consen  347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKI----------PSGQTVALVGPSGSGKSTLIQLLARFYDPT----SGEV-L  411 (1228)
T ss_pred             cccceEEEEEEecCCCCCcchhhCCeEEEe----------CCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CceE-E
Confidence            348899999999999887 35999999998          899999999999999999999999999976    7888 5


Q ss_pred             EecccccCCC
Q 019312           97 YKGLDITTNK  106 (343)
Q Consensus        97 y~gl~I~T~k  106 (343)
                      .+|.||-+-.
T Consensus       412 idG~di~~~~  421 (1228)
T KOG0055|consen  412 IDGEDIRNLN  421 (1228)
T ss_pred             EcCccchhcc
Confidence            7888886544

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.57  E-value=7.3e-08  Score=87.33  Aligned_cols=66  Identities=21%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~----~G~v-~~~g~~   64 (204)
T PRK13538          2 LEARNLACERDE--RILFSGLSFTL----------NAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEV-LWQGEP   64 (204)
T ss_pred             eEEEEEEEEECC--EEEEecceEEE----------CCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence            356677777754  34899999998          899999999999999999999999998754    6888 477776


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        65 ~~~   67 (204)
T PRK13538         65 IRR   67 (204)
T ss_pred             ccc
Confidence            643

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.57  E-value=6.5e-08  Score=89.63  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  +.+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   64 (240)
T PRK09493          2 IEFKNVSKHFGP--TQVLHNIDLNI----------DQGEVVVIIGPSGSGKSTLLRCINKLEEIT----SGDL-IVDGLK   64 (240)
T ss_pred             EEEEeEEEEECC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence            467788888763  34899999998          899999999999999999999999988754    6888 477777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        65 ~~   66 (240)
T PRK09493         65 VN   66 (240)
T ss_pred             CC
Confidence            64

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.57  E-value=7.3e-08  Score=88.90  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+... .+++++++++          .+|.+++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~~-~~l~~i~~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~v-~~~g~~~   65 (236)
T cd03253           2 EFENVTFAYDPGR-PVLKDVSFTI----------PAGKKVAIVGPSGSGKSTILRLLFRFYDVS----SGSI-LIDGQDI   65 (236)
T ss_pred             EEEEEEEEeCCCC-ceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC----CCEE-EECCEEh
Confidence            5677888886433 3899999998          899999999999999999999999998754    6888 4777766


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        66 ~   66 (236)
T cd03253          66 R   66 (236)
T ss_pred             h
Confidence            4

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13949 shikimate kinase; Provisional

Probab=98.57  E-value=1.4e-07  Score=83.62  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=70.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ..|+|+|++||||||+++.||+.++ ..+|+.|.+ +-...  +  +              ..-+..+ ......|++..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~-~~~id~D~~-i~~~~--~--~--------------~~~~~~~-~~g~~~fr~~e   60 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELG-LSFIDLDFF-IENRF--H--K--------------TVGDIFA-ERGEAVFRELE   60 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC-CCeecccHH-HHHHH--C--c--------------cHHHHHH-HhCHHHHHHHH
Confidence            3589999999999999999999998 888888865 11100  0  0              0011112 34556788877


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      .+++.++.......|.+||....         ++....            .++-...+|||+.+.+.+.+||..
T Consensus        61 ~~~l~~l~~~~~~vis~Ggg~~~---------~~~~~~------------~l~~~~~vi~L~~~~~~~~~Ri~~  113 (169)
T PRK13949         61 RNMLHEVAEFEDVVISTGGGAPC---------FFDNME------------LMNASGTTVYLKVSPEVLFVRLRL  113 (169)
T ss_pred             HHHHHHHHhCCCEEEEcCCcccC---------CHHHHH------------HHHhCCeEEEEECCHHHHHHHHhc
Confidence            78888876556655556664221         111000            001123578999999999999864

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=7e-08  Score=91.36  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   64 (271)
T PRK13638          2 LATSDLWFRYQD--EPVLKGLNLDF----------SLSPVTGLVGANGCGKSTLFMNLSGLLRPQ----KGAV-LWQGKP   64 (271)
T ss_pred             eEEEEEEEEcCC--cccccceEEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----ccEE-EECCEE
Confidence            467788888863  34899999998          889999999999999999999999998754    6888 477877


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        65 i~   66 (271)
T PRK13638         65 LD   66 (271)
T ss_pred             cc
Confidence            74

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.57  E-value=7e-08  Score=89.88  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++.+++.    .|.+ .+.|.+
T Consensus         4 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   66 (250)
T PRK11264          4 IEVKNLVKKFHG--QTVLHGIDLEV----------KPGEVVAIIGPSGSGKTTLLRCINLLEQPE----AGTI-RVGDIT   66 (250)
T ss_pred             EEEeceEEEECC--eeeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEE
Confidence            678899998864  24899999998          899999999999999999999999988744    6777 367777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        67 ~~   68 (250)
T PRK11264         67 ID   68 (250)
T ss_pred             cc
Confidence            64

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.57  E-value=7.1e-08  Score=94.90  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+..  ...+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i----------~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~----~G~I-~i~G   66 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHV----------PAGQIYGVIGASGAGKSTLIRCVNLLERPT----SGSV-IVDG   66 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence            5778888888632  235899999998          899999999999999999999999998754    7888 5889


Q ss_pred             ccccCCC
Q 019312          100 LDITTNK  106 (343)
Q Consensus       100 l~I~T~k  106 (343)
                      .++....
T Consensus        67 ~~i~~~~   73 (343)
T TIGR02314        67 QDLTTLS   73 (343)
T ss_pred             EECCcCC
Confidence            8886543

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK00625 shikimate kinase; Provisional

Probab=98.57  E-value=1.2e-07  Score=84.76  Aligned_cols=115  Identities=14%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD  140 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~  140 (343)
                      .|+|+|+.||||||+++.||+.++ ..+|+.|.+ +-+..            .+-.|.  ...+..+ ......|++...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~-~~~id~D~~-I~~~~------------g~~~~~--~i~eif~-~~Ge~~fr~~E~   64 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDL-IVSNY------------HGALYS--SPKEIYQ-AYGEEGFCREEF   64 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CCEEEhhHH-HHHHh------------CCCCCC--CHHHHHH-HHCHHHHHHHHH
Confidence            488999999999999999999998 888888876 11100            000000  0111112 455677888888


Q ss_pred             HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      +.+.++.. +...|.+||....         +++.  +.          .+....+++||+.+.+.+.+||.+|
T Consensus        65 ~~l~~l~~-~~~VIs~GGg~~~---------~~e~--~~----------~l~~~~~Vv~L~~~~e~l~~Rl~~R  116 (173)
T PRK00625         65 LALTSLPV-IPSIVALGGGTLM---------IEPS--YA----------HIRNRGLLVLLSLPIATIYQRLQKR  116 (173)
T ss_pred             HHHHHhcc-CCeEEECCCCccC---------CHHH--HH----------HHhcCCEEEEEECCHHHHHHHHhcC
Confidence            88887764 4545556664322         1111  10          0112346899999999999999877

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.57  E-value=7.1e-08  Score=85.95  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|      +++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.+
T Consensus         5 l~~~~l~~~~------~l~~vs~~i----------~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   63 (182)
T cd03215           5 LEVRGLSVKG------AVRDVSFEV----------RAGEIVGIAGLVGNGQTELAEALFGLRPPA----SGEI-TLDGKP   63 (182)
T ss_pred             EEEeccEEEe------eecceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEE
Confidence            6677888876      789999998          889999999999999999999999998754    6888 477877


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        64 ~~~~   67 (182)
T cd03215          64 VTRR   67 (182)
T ss_pred             CCcc
Confidence            7644

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.56  E-value=6.7e-08  Score=87.54  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~~~~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~   64 (208)
T cd03268           2 KTNDLTKTYGK--KRVLDDISLHV----------KKGEIYGFLGPNGAGKTTTMKIILGLIKPD----SGEI-TFDGKSY   64 (208)
T ss_pred             EEEEEEEEECC--eEeEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCCcc
Confidence            56778888753  34899999998          889999999999999999999999988754    6888 4667665


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (208)
T cd03268          65 Q   65 (208)
T ss_pred             c
Confidence            4

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.56  E-value=6.7e-08  Score=90.30  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++. +.|.+
T Consensus         1 i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~   63 (252)
T TIGR03005         1 VRFSDVTKRFGI--LTVLDGLNFSV----------AAGEKVALIGPSGSGKSTILRILMTLEPID----EGQIQ-VEGEQ   63 (252)
T ss_pred             CEEEEEEEEeCC--eeEEeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence            357788888863  34899999998          899999999999999999999999988754    67774 67766


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        64 i~   65 (252)
T TIGR03005        64 LY   65 (252)
T ss_pred             cc
Confidence            63

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.56  E-value=5.9e-08  Score=89.05  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=57.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      |+..+++++-.  .+..+.+++++.          .+|++.+|+||||+|||||.+.|.+.+.|.    .|.+ -|.|.+
T Consensus         2 i~a~nls~~~~--Gr~ll~~vsl~~----------~pGev~ailGPNGAGKSTlLk~LsGel~p~----~G~v-~~~g~~   64 (259)
T COG4559           2 IRAENLSYSLA--GRRLLDGVSLDL----------RPGEVLAILGPNGAGKSTLLKALSGELSPD----SGEV-TLNGVP   64 (259)
T ss_pred             eeeeeeEEEee--cceeccCcceec----------cCCcEEEEECCCCccHHHHHHHhhCccCCC----CCeE-eeCCcC
Confidence            34556665554  345789999997          899999999999999999999999999865    6788 488998


Q ss_pred             ccCCCCCc
Q 019312          102 ITTNKIPS  109 (343)
Q Consensus       102 I~T~kp~~  109 (343)
                      +.+.+|..
T Consensus        65 l~~~~~~~   72 (259)
T COG4559          65 LNSWPPEE   72 (259)
T ss_pred             hhhCCHHH
Confidence            87766543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.56  E-value=1.1e-07  Score=81.25  Aligned_cols=111  Identities=17%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhH
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADN  141 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~  141 (343)
                      |+|+|++||||||+++.|++.++ ..+++.|.+ +..-.             +.     +.....+ .++...|.....+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~-~~~~~~d~~-~~~~~-------------~~-----~~~~~~~-~~~~~~~~~~e~~   60 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG-LPFVDLDEL-IEQRA-------------GM-----SIPEIFA-EEGEEGFRELERE   60 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC-CCEEEchHH-HHHHc-------------CC-----CHHHHHH-HHCHHHHHHHHHH
Confidence            78999999999999999999998 888888866 11100             00     0001111 3344567766666


Q ss_pred             HHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          142 AISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       142 ~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      .+..+...+.. ||++|++..+        |+..   .     +    ....+..++||.++.+.+.+|+.+|
T Consensus        61 ~~~~~~~~~~~-vi~~g~~~i~--------~~~~---~-----~----~~~~~~~~i~l~~~~e~~~~R~~~r  112 (154)
T cd00464          61 VLLLLLTKENA-VIATGGGAVL--------REEN---R-----R----LLLENGIVVWLDASPEELLERLARD  112 (154)
T ss_pred             HHHHHhccCCc-EEECCCCccC--------cHHH---H-----H----HHHcCCeEEEEeCCHHHHHHHhccC
Confidence            77777776665 4544544322        1110   0     0    0011346889999999999999876

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1.1e-07  Score=91.01  Aligned_cols=82  Identities=10%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-
Q 019312            9 PTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-   87 (343)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-   87 (343)
                      |...+....+...+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+++.. 
T Consensus        27 ~~~~~~~~~~~~~l~i~~l~~~~~~--~~il~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~   94 (285)
T PRK14254         27 PSGDPAASSGETVIEARDLNVFYGD--EQALDDVSMDI----------PENQVTAMIGPSGCGKSTFLRCINRMNDLIDA   94 (285)
T ss_pred             CCCCccccCCCceEEEEEEEEEECC--EeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCcccC
Confidence            3334444455667899999999964  34899999998          8999999999999999999999999875210 


Q ss_pred             eecCCceEEEeccccc
Q 019312           88 IINSDKMQVYKGLDIT  103 (343)
Q Consensus        88 IIs~Ds~qvy~gl~I~  103 (343)
                      ..+.|++. +.|.++.
T Consensus        95 ~p~~G~I~-i~G~~i~  109 (285)
T PRK14254         95 ARVEGELT-FRGKNVY  109 (285)
T ss_pred             CCCceEEE-ECCEEcc
Confidence            01368884 6777664

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.56  E-value=8.6e-08  Score=86.60  Aligned_cols=65  Identities=15%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~il~~~s~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v-~~~g~~   64 (200)
T PRK13540          2 LDVIELDFDYHD--QPLLQQISFHL----------PAGGLLHLKGSNGAGKTTLLKLIAGLLNPE----KGEI-LFERQS   64 (200)
T ss_pred             EEEEEEEEEeCC--eeEEeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeeE-EECCCc
Confidence            457788888864  23899999998          899999999999999999999999998754    6777 367766


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        65 ~~   66 (200)
T PRK13540         65 IK   66 (200)
T ss_pred             cc
Confidence            64

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.55  E-value=6.5e-08  Score=87.82  Aligned_cols=63  Identities=22%  Similarity=0.177  Sum_probs=51.9

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+..  ..++++++++          .++ +++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~~~~~~~~~--~~l~~vs~~i----------~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~~   63 (211)
T cd03264           2 QLENLTKRYGKK--RALDGVSLTL----------GPG-MYGLLGPNGAGKTTLMRILATLTPPS----SGTI-RIDGQDV   63 (211)
T ss_pred             EEEEEEEEECCE--EEEcceeEEE----------cCC-cEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCCcc
Confidence            567888888642  4899999998          778 99999999999999999999988754    6888 4677665


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        64 ~   64 (211)
T cd03264          64 L   64 (211)
T ss_pred             c
Confidence            4

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.55  E-value=8.4e-08  Score=90.80  Aligned_cols=67  Identities=19%  Similarity=0.333  Sum_probs=56.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.
T Consensus         7 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~   69 (269)
T PRK11831          7 LVDMRGVSFTRGN--RCIFDNISLTV----------PRGKITAIMGPSGIGKTTLLRLIGGQIAPD----HGEIL-FDGE   69 (269)
T ss_pred             eEEEeCeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECCE
Confidence            4788999998863  34899999998          899999999999999999999999998754    68884 7787


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        70 ~i~~   73 (269)
T PRK11831         70 NIPA   73 (269)
T ss_pred             Eccc
Confidence            7754

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.55  E-value=9.3e-08  Score=86.46  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=52.1

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|....   +.+++++++++          ++|++++|+||||||||||++.|++..++.    .|++. +.
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i----------~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~----~G~i~-~~   65 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEV----------PKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVS-VP   65 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEE----------CCCCEEEEECCCCCCHHHHHHHHhCcCCCC----CCeEE-Ec
Confidence            35778888887642   35899999998          899999999999999999999999988743    67774 44


Q ss_pred             c
Q 019312           99 G   99 (343)
Q Consensus        99 g   99 (343)
                      |
T Consensus        66 g   66 (204)
T cd03250          66 G   66 (204)
T ss_pred             C
Confidence            4

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=8.5e-08  Score=87.17  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .|.|.+
T Consensus         3 l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~   65 (207)
T PRK13539          3 LEGEDLACVRGG--RVLFSGLSFTL----------AAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTI-KLDGGD   65 (207)
T ss_pred             EEEEeEEEEECC--eEEEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEe
Confidence            467788888764  34899999998          899999999999999999999999987744    6888 477766


Q ss_pred             c
Q 019312          102 I  102 (343)
Q Consensus       102 I  102 (343)
                      +
T Consensus        66 ~   66 (207)
T PRK13539         66 I   66 (207)
T ss_pred             C
Confidence            4

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=8.8e-08  Score=91.61  Aligned_cols=69  Identities=20%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             ceeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           21 HYSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      .+++.++++.|....   ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~----~G~i~-~   66 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFEL----------EEGSFVALVGHTGSGKSTLMQHFNALLKPS----SGTIT-I   66 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEE-E
Confidence            357888999887432   34899999998          899999999999999999999999998864    78884 7


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus        67 ~g~~~~~   73 (287)
T PRK13641         67 AGYHITP   73 (287)
T ss_pred             CCEECcc
Confidence            8887753

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=1.1e-07  Score=90.52  Aligned_cols=69  Identities=20%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             ceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      -+++.++++.|+... ..+++++++++          .+|++++|+|+||||||||++.|++..++.    .|++ .+.|
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g   68 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSI----------TKGEWVSIIGQNGSGKSTTARLIDGLFEEF----EGKV-KIDG   68 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CCEE-EECC
Confidence            377889999997532 34899999998          899999999999999999999999998854    7888 4788


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        69 ~~i~~   73 (277)
T PRK13642         69 ELLTA   73 (277)
T ss_pred             EECCc
Confidence            87754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.55  E-value=9.9e-08  Score=84.01  Aligned_cols=59  Identities=24%  Similarity=0.232  Sum_probs=49.4

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +++.++++.|+.. ...++++++++          .+|++++|+||||||||||++.|++.+++.    .|++.
T Consensus         1 i~~~~~~~~~~~~-~~~l~~i~l~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~   59 (166)
T cd03223           1 IELENLSLATPDG-RVLLKDLSFEI----------KPGDRLLITGPSGTGKSSLFRALAGLWPWG----SGRIG   59 (166)
T ss_pred             CEEEEEEEEcCCC-CeeeecCeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceEE
Confidence            3567888888644 34899999998          899999999999999999999999998743    67773

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.54  E-value=1.1e-07  Score=99.29  Aligned_cols=69  Identities=29%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+|+|.|+.. +.+++++++++          ++|+.++|+|+||||||||++.|++.++|.    .|.+ .+.|
T Consensus       333 ~~I~~~~vsf~y~~~-~~iL~~inl~i----------~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~----~G~I-~i~g  396 (588)
T PRK13657        333 GAVEFDDVSFSYDNS-RQGVEDVSFEA----------KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ----SGRI-LIDG  396 (588)
T ss_pred             CeEEEEEEEEEeCCC-CceecceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-EECC
Confidence            579999999999854 34899999998          999999999999999999999999999864    6777 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus       397 ~~i~~  401 (588)
T PRK13657        397 TDIRT  401 (588)
T ss_pred             EEhhh
Confidence            77753

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.54  E-value=1.1e-07  Score=98.86  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             ccceeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           19 QQHYSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      ..++++.+|+|.|+..   .+.+++++++++          ++|+.++|+||||||||||++.|++.++|.    .|++.
T Consensus       335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i----------~~G~~~aivG~sGsGKSTl~~ll~g~~~p~----~G~i~  400 (555)
T TIGR01194       335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRI----------AQGDIVFIVGENGCGKSTLAKLFCGLYIPQ----EGEIL  400 (555)
T ss_pred             CceEEEEEEEEEeCCCCCCcCceeccceEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE
Confidence            3679999999999853   234899999998          899999999999999999999999998864    68884


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                       +.|.++.
T Consensus       401 -~~g~~i~  407 (555)
T TIGR01194       401 -LDGAAVS  407 (555)
T ss_pred             -ECCEECC
Confidence             6777764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1e-07  Score=90.32  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCc
Q 019312           15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDK   93 (343)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds   93 (343)
                      ..+.+..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.. ....|+
T Consensus         7 ~~~~~~~l~i~nl~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~   74 (269)
T PRK14259          7 KISKNIIISLQNVTISYGT--FEAVKNVFCDI----------PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR   74 (269)
T ss_pred             CCCCCceEEEEeEEEEECC--EEEEcceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence            3455667999999999874  24899999998          8999999999999999999999999865210 013677


Q ss_pred             eEEEeccccc
Q 019312           94 MQVYKGLDIT  103 (343)
Q Consensus        94 ~qvy~gl~I~  103 (343)
                      +. +.|.++.
T Consensus        75 v~-~~g~~i~   83 (269)
T PRK14259         75 VL-FDGTDLY   83 (269)
T ss_pred             EE-ECCEEcc
Confidence            74 7777664

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.3e-07  Score=89.26  Aligned_cols=79  Identities=14%  Similarity=0.069  Sum_probs=61.4

Q ss_pred             CCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-e
Q 019312           11 PACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-I   89 (343)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-I   89 (343)
                      |+..-.|++..+++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++...+..- .
T Consensus         6 ~~~~~~~~~~~l~~~~l~~~~~~~--~vl~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   73 (265)
T PRK14252          6 PAGDVSPTQQKSEVNKLNFYYGGY--QALKNINMMV----------HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNH   73 (265)
T ss_pred             cCCCccCCCceEEEEEEEEEECCe--eeeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCC
Confidence            455566777889999999999742  4899999998          89999999999999999999999998752100 1


Q ss_pred             cCCceEEEecccc
Q 019312           90 NSDKMQVYKGLDI  102 (343)
Q Consensus        90 s~Ds~qvy~gl~I  102 (343)
                      ..|++. +.|.++
T Consensus        74 ~sG~i~-~~g~~~   85 (265)
T PRK14252         74 YEGEII-LHPDNV   85 (265)
T ss_pred             cccEEE-EcCccc
Confidence            256773 555544

>PRK13947 shikimate kinase; Provisional

Probab=98.54  E-value=1.5e-07  Score=82.31  Aligned_cols=129  Identities=16%  Similarity=0.249  Sum_probs=76.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCc-cccccccCCCcccChhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH-HLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h-~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      .|+|+|+.||||||+++.||+.++ ..+|+.|.+  .+..            .+.+- .++      + .+....|....
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg-~~~id~d~~--~~~~------------~g~~~~~~~------~-~~ge~~~~~~e   60 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS-FGFIDTDKE--IEKM------------TGMTVAEIF------E-KDGEVRFRSEE   60 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC-CCEEECchh--hhhh------------cCCcHHHHH------H-HhChHHHHHHH
Confidence            589999999999999999999998 888888876  1111            11110 011      1 22334566666


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHH-
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDM-  218 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~M-  218 (343)
                      ...++.+...+...|-+||.-.         .|+..  ..      .+    +....++||.++.+.+.+|+..|-... 
T Consensus        61 ~~~~~~l~~~~~~vi~~g~g~v---------l~~~~--~~------~l----~~~~~vv~L~~~~~~l~~Rl~~r~~rp~  119 (171)
T PRK13947         61 KLLVKKLARLKNLVIATGGGVV---------LNPEN--VV------QL----RKNGVVICLKARPEVILRRVGKKKSRPL  119 (171)
T ss_pred             HHHHHHHhhcCCeEEECCCCCc---------CCHHH--HH------HH----HhCCEEEEEECCHHHHHHHhcCCCCCCC
Confidence            6677777655554444454311         12211  00      00    011247899999999999998764331 


Q ss_pred             -HhccHHHHHHHHHh
Q 019312          219 -LESGMFEELAEFFD  232 (343)
Q Consensus       219 -l~~GlleEv~~l~~  232 (343)
                       ....+.+++.++++
T Consensus       120 ~~~~~~~~~i~~~~~  134 (171)
T PRK13947        120 LMVGDPEERIKELLK  134 (171)
T ss_pred             CCCCChHHHHHHHHH
Confidence             13445666665543

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1e-07  Score=93.20  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=61.7

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~q   95 (343)
                      |....+++.++++.|+...+.+|+++++++          .+|++++|+||||||||||++.|++...+. .....|++ 
T Consensus        76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I----------~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I-  144 (329)
T PRK14257         76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDI----------KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI-  144 (329)
T ss_pred             CcCceEEEEeeEEEecCCCceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-
Confidence            555678999999999865555899999998          899999999999999999999999987410 01236888 


Q ss_pred             EEecccccC
Q 019312           96 VYKGLDITT  104 (343)
Q Consensus        96 vy~gl~I~T  104 (343)
                      .+.|.+|..
T Consensus       145 ~idG~~i~~  153 (329)
T PRK14257        145 YFLGTNTRS  153 (329)
T ss_pred             EECCEEccc
Confidence            478888753

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.54  E-value=1.1e-07  Score=89.27  Aligned_cols=64  Identities=23%  Similarity=0.272  Sum_probs=55.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .|.|.
T Consensus         6 ~l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~   68 (258)
T PRK11701          6 LLSVRGLTKLYGP--RKGCRDVSFDL----------YPGEVLGIVGESGSGKTTLLNALSARLAPD----AGEV-HYRMR   68 (258)
T ss_pred             eEEEeeeEEEcCC--ceeeeeeeEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCc
Confidence            4788999999874  24899999998          899999999999999999999999998754    6888 47777


Q ss_pred             c
Q 019312          101 D  101 (343)
Q Consensus       101 ~  101 (343)
                      +
T Consensus        69 ~   69 (258)
T PRK11701         69 D   69 (258)
T ss_pred             c
Confidence            6

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.54  E-value=9.9e-08  Score=90.07  Aligned_cols=67  Identities=18%  Similarity=0.095  Sum_probs=55.4

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +-.+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.
T Consensus        10 ~~~l~i~~l~~~~~~--~~il~~isl~i----------~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~----~G~i~-~~   72 (257)
T PRK11247         10 GTPLLLNAVSKRYGE--RTVLNQLDLHI----------PAGQFVAVVGRSGCGKSTLLRLLAGLETPS----AGELL-AG   72 (257)
T ss_pred             CCcEEEEEEEEEECC--cceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEEE-EC
Confidence            345889999999864  34899999998          899999999999999999999999998754    67773 55


Q ss_pred             cccc
Q 019312           99 GLDI  102 (343)
Q Consensus        99 gl~I  102 (343)
                      |.++
T Consensus        73 g~~~   76 (257)
T PRK11247         73 TAPL   76 (257)
T ss_pred             CEEH
Confidence            6554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.54  E-value=1.1e-07  Score=90.07  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=57.2

Q ss_pred             eeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           22 YSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        22 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++.++++.|+.+       ...+++++++++          .+|++++|+||||||||||++.|++..++.    .|++
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----sG~i   69 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL----------KSGETVALLGRSGCGKSTLARLLVGLESPS----QGNV   69 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence            6788999999741       244899999998          899999999999999999999999988754    7888


Q ss_pred             EEEecccccCC
Q 019312           95 QVYKGLDITTN  105 (343)
Q Consensus        95 qvy~gl~I~T~  105 (343)
                      . +.|.++...
T Consensus        70 ~-~~g~~~~~~   79 (268)
T PRK10419         70 S-WRGEPLAKL   79 (268)
T ss_pred             E-ECCEecccc
Confidence            4 778776543

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.53  E-value=1.1e-07  Score=93.54  Aligned_cols=68  Identities=12%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+++..|...  .+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|.+. +.|
T Consensus        40 ~~i~i~nl~k~y~~~--~~l~~is~~i----------~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~----~G~i~-i~G  102 (340)
T PRK13536         40 VAIDLAGVSKSYGDK--AVVNGLSFTV----------ASGECFGLLGPNGAGKSTIARMILGMTSPD----AGKIT-VLG  102 (340)
T ss_pred             eeEEEEEEEEEECCE--EEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----ceEEE-ECC
Confidence            358888999998743  4899999998          899999999999999999999999998765    78885 778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus       103 ~~~~~  107 (340)
T PRK13536        103 VPVPA  107 (340)
T ss_pred             EECCc
Confidence            88754

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.53  E-value=1e-07  Score=89.66  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=55.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         3 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~----~G~i-~~~g~~   65 (258)
T PRK13548          3 LEARNLSVRLGG--RTLLDDVSLTL----------RPGEVVAILGPNGAGKSTLLRALSGELSPD----SGEV-RLNGRP   65 (258)
T ss_pred             EEEEeEEEEeCC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCEE
Confidence            567888888864  34899999998          899999999999999999999999998754    6888 477777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (258)
T PRK13548         66 LA   67 (258)
T ss_pred             cc
Confidence            64

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.53  E-value=2.6e-07  Score=81.37  Aligned_cols=113  Identities=18%  Similarity=0.294  Sum_probs=63.9

Q ss_pred             EcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHH
Q 019312           65 MGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAIS  144 (343)
Q Consensus        65 ~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~  144 (343)
                      +||+||||||++..|++.++ ...++.|.++. + ..+      .....+++++        +  -....|.........
T Consensus         1 ~G~sGsGKSTla~~la~~l~-~~~~~~d~~~~-~-~~~------~~~~~g~~~~--------~--~~~~~~~~~~~~~~~   61 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH-AAFLDGDFLHP-R-RNI------EKMASGEPLN--------D--DDRKPWLQALNDAAF   61 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC-CeEEeCccCCc-h-hhh------ccccCCCCCC--------h--hhHHHHHHHHHHHHH
Confidence            69999999999999999997 66777665520 0 000      0011122221        1  122334433333333


Q ss_pred             HHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          145 DIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       145 ~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      .....+...|++ .|.+ .+..-.        .+..          ...++.++||.++.++|.+|+..|-.
T Consensus        62 ~~~~~~~~~viv-~s~~-~~~~r~--------~~~~----------~~~~~~~v~l~a~~~~l~~Rl~~R~~  113 (163)
T PRK11545         62 AMQRTNKVSLIV-CSAL-KKHYRD--------LLRE----------GNPNLSFIYLKGDFDVIESRLKARKG  113 (163)
T ss_pred             HHHHcCCceEEE-Eecc-hHHHHH--------HHHc----------cCCCEEEEEEECCHHHHHHHHHhccC
Confidence            333345666666 4443 111110        1111          12457899999999999999999964

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.53  E-value=1e-07  Score=93.11  Aligned_cols=73  Identities=12%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+..  ...+++++++++          .+|++++|+|+||||||||++.|++.+++..-.+.|++ .|.|
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i----------~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g   72 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTL----------TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDD   72 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECC
Confidence            5677888888642  234899999998          89999999999999999999999998862112347888 5889


Q ss_pred             ccccCC
Q 019312          100 LDITTN  105 (343)
Q Consensus       100 l~I~T~  105 (343)
                      .++...
T Consensus        73 ~~i~~~   78 (330)
T PRK15093         73 IDLLRL   78 (330)
T ss_pred             EECCcC
Confidence            888654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.53  E-value=8.3e-08  Score=86.60  Aligned_cols=62  Identities=18%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++.
T Consensus         2 ~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~   63 (206)
T TIGR03608         2 KNISKKFGD--KIILDDLNLTI----------EKGKMYAIIGESGSGKSTLLNIIGLLEKFD----SGQV-YLNGKETP   63 (206)
T ss_pred             cceEEEECC--EEEEeceEEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEEcc
Confidence            456677763  24899999998          889999999999999999999999998754    6887 47776653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.53  E-value=1.2e-07  Score=108.87  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=64.6

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |..+++++.+|+|.|+.+.+.+|+++++++          ++|+.++|+|+||||||||+..|++... .    .|++ .
T Consensus      1213 p~~g~I~f~nVs~~Y~~~~~~vL~~is~~I----------~~GekvaIvGrSGsGKSTLl~lL~rl~~-~----~G~I-~ 1276 (1490)
T TIGR01271      1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSV----------EGGQRVGLLGRTGSGKSTLLSALLRLLS-T----EGEI-Q 1276 (1490)
T ss_pred             CCCCeEEEEEEEEEeCCCCcceeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhhhcC-C----CcEE-E
Confidence            456789999999999987777999999998          8999999999999999999999999875 3    6888 5


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.||.+-
T Consensus      1277 IdG~di~~i 1285 (1490)
T TIGR01271      1277 IDGVSWNSV 1285 (1490)
T ss_pred             ECCEEcccC
Confidence            889998643

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=9.6e-08  Score=89.21  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~   67 (255)
T PRK11300          5 LLSVSGLMMRFGG--LLAVNNVNLEV----------REQEIVSLIGPNGAGKTTVFNCLTGFYKPT----GGTIL-LRGQ   67 (255)
T ss_pred             eEEEeeEEEEECC--EEEEEeeeeEE----------cCCeEEEEECCCCCCHHHHHHHHhCCcCCC----cceEE-ECCE
Confidence            4788999999863  34899999998          889999999999999999999999998754    78884 7787


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        68 ~~~~   71 (255)
T PRK11300         68 HIEG   71 (255)
T ss_pred             ECCC
Confidence            7654

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.53  E-value=1.1e-07  Score=85.46  Aligned_cols=64  Identities=27%  Similarity=0.311  Sum_probs=51.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ...+ ++++++          .+|++++|+||||||||||++.|++..++.    .|++. +.|.+
T Consensus         2 l~~~~l~~~~~~--~~l~-~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~~   63 (195)
T PRK13541          2 LSLHQLQFNIEQ--KNLF-DLSITF----------LPSAITYIKGANGCGKSSLLRMIAGIMQPS----SGNIY-YKNCN   63 (195)
T ss_pred             eEEEEeeEEECC--cEEE-EEEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEEE-ECCcc
Confidence            467788888853  3344 599997          899999999999999999999999998754    78884 77776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        64 i~   65 (195)
T PRK13541         64 IN   65 (195)
T ss_pred             cC
Confidence            64

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.53  E-value=1e-07  Score=86.65  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=58.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      .....++..|+..+.+.+.++++++          .++..++++||||||||||...+|+...|.    .+++| ..|..
T Consensus         4 l~~~~~sl~y~g~~~~~le~vsL~i----------a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~----~G~i~-l~~r~   68 (259)
T COG4525           4 LNVSHLSLSYEGKPRSALEDVSLTI----------ASGELVVVLGPSGCGKTTLLNLIAGFVTPS----RGSIQ-LNGRR   68 (259)
T ss_pred             eehhheEEecCCcchhhhhccceee----------cCCCEEEEEcCCCccHHHHHHHHhcCcCcc----cceEE-ECCEe
Confidence            3456677788877788999999998          889999999999999999999999999875    79998 77777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      |.
T Consensus        69 i~   70 (259)
T COG4525          69 IE   70 (259)
T ss_pred             cc
Confidence            75

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.53  E-value=1.1e-07  Score=89.87  Aligned_cols=73  Identities=14%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qv   96 (343)
                      .+..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++. .-...|++ .
T Consensus        16 ~~~~l~~~nl~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~   82 (267)
T PRK14235         16 TEIKMRARDVSVFYGE--KQALFDVDLDI----------PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-T   82 (267)
T ss_pred             CCceEEEEeEEEEECC--EEEEEEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-E
Confidence            3457899999999974  34899999998          899999999999999999999999987530 00125777 4


Q ss_pred             Eeccccc
Q 019312           97 YKGLDIT  103 (343)
Q Consensus        97 y~gl~I~  103 (343)
                      +.|.++.
T Consensus        83 ~~g~~i~   89 (267)
T PRK14235         83 LDGEDIY   89 (267)
T ss_pred             ECCEECc
Confidence            6777664

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.53  E-value=1e-07  Score=85.94  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|..  ...++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   64 (198)
T TIGR01189         2 AARNLACSRGE--RMLFEGLSFTL----------NAGEALQVTGPNGIGKTTLLRILAGLLRPD----SGEV-RWNGTAL   64 (198)
T ss_pred             EEEEEEEEECC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ccEE-EECCEEc
Confidence            45566666653  24799999998          899999999999999999999999988754    6777 4777766


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (198)
T TIGR01189        65 AE   66 (198)
T ss_pred             cc
Confidence            43

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.53  E-value=1.1e-07  Score=89.02  Aligned_cols=69  Identities=9%  Similarity=0.138  Sum_probs=56.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|  +. .+++++++++          .+|++++|+||||||||||++.|++..++......|++ .+.|.
T Consensus         4 ~l~~~~l~~~~--~~-~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i-~~~g~   69 (254)
T PRK10418          4 QIELRNIALQA--AQ-PLVHGVSLTL----------QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGK   69 (254)
T ss_pred             EEEEeCeEEEe--cc-ceecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE-EECCe
Confidence            67889999988  33 4899999998          89999999999999999999999999874111136888 47777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        70 ~i~   72 (254)
T PRK10418         70 PVA   72 (254)
T ss_pred             ecc
Confidence            764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.2e-07  Score=89.16  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=57.2

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qv   96 (343)
                      ....+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+.+.+ .-+.|++. 
T Consensus        10 ~~~~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~-   76 (260)
T PRK10744         10 APSKIQVRNLNFYYGK--FHALKNINLDI----------AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL-   76 (260)
T ss_pred             CCceEEEEEEEEEeCC--eEEeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE-
Confidence            3456889999999974  24899999998          8999999999999999999999999874100 11267774 


Q ss_pred             Eeccccc
Q 019312           97 YKGLDIT  103 (343)
Q Consensus        97 y~gl~I~  103 (343)
                      +.|.++.
T Consensus        77 ~~g~~~~   83 (260)
T PRK10744         77 LDGENIL   83 (260)
T ss_pred             ECCEEcc
Confidence            6777664

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.52  E-value=1.3e-07  Score=91.00  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++..+++-.|.. ...+++++++++          .+|++++|+||||||||||++.|++...|.    .|++. +.|.+
T Consensus         5 i~~~~l~k~~~~-~~~~l~~vs~~i----------~~Gei~gllG~NGAGKTTllk~l~gl~~p~----~G~i~-i~G~~   68 (293)
T COG1131           5 IEVRNLTKKYGG-DKTALDGVSFEV----------EPGEIFGLLGPNGAGKTTLLKILAGLLKPT----SGEIL-VLGYD   68 (293)
T ss_pred             eeecceEEEeCC-CCEEEeceeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-EcCEe
Confidence            344566656653 234899999998          899999999999999999999999999864    78985 77888


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        69 ~~~~   72 (293)
T COG1131          69 VVKE   72 (293)
T ss_pred             CccC
Confidence            7643

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.52  E-value=9.7e-08  Score=88.35  Aligned_cols=65  Identities=25%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGL  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+  +|.    .|++. +.|.
T Consensus         2 ~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~----~G~i~-~~g~   64 (243)
T TIGR01978         2 KIKDLHVSVED--KEILKGVNLTV----------KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT----SGTIL-FKGQ   64 (243)
T ss_pred             eEeeEEEEECC--EEEEeccceEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----cceEE-ECCE
Confidence            56788888863  34899999998          899999999999999999999999984  333    68884 7777


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        65 ~~~~   68 (243)
T TIGR01978        65 DLLE   68 (243)
T ss_pred             ecCC
Confidence            7653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.52  E-value=1.2e-07  Score=87.41  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.+.+..|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.+
T Consensus        23 l~~~~~~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~----~G~i~-~~g~~   85 (224)
T cd03220          23 LGILGRKGEVGE--FWALKDVSFEV----------PRGERIGLIGRNGAGKSTLLRLLAGIYPPD----SGTVT-VRGRV   85 (224)
T ss_pred             hhhhhhhhhcCC--eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence            334445554443  34899999998          899999999999999999999999988754    67773 66655


Q ss_pred             c
Q 019312          102 I  102 (343)
Q Consensus       102 I  102 (343)
                      +
T Consensus        86 ~   86 (224)
T cd03220          86 S   86 (224)
T ss_pred             c
Confidence            4

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.8e-07  Score=87.47  Aligned_cols=72  Identities=15%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~   98 (343)
                      ..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+++.+. -..|++ .+.
T Consensus         3 ~~l~~~nl~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~   69 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NHAVKDVSMDF----------PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI-LLD   69 (252)
T ss_pred             cEEEEEEEEEEeCC--eeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE-EEC
Confidence            35788899999873  34899999998          89999999999999999999999998741000 125777 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        70 g~~i~~   75 (252)
T PRK14256         70 DTDIYD   75 (252)
T ss_pred             CEEccc
Confidence            887753

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=1.1e-07  Score=93.92  Aligned_cols=69  Identities=14%  Similarity=0.058  Sum_probs=57.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         3 ~l~i~~l~~~~~~~-~~~l~~vsl~i----------~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~----~G~I-~~~g~   66 (356)
T PRK11650          3 GLKLQAVRKSYDGK-TQVIKGIDLDV----------ADGEFIVLVGPSGCGKSTLLRMVAGLERIT----SGEI-WIGGR   66 (356)
T ss_pred             EEEEEeEEEEeCCC-CEEEeeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence            36788899888533 34899999998          899999999999999999999999998754    7888 58888


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        67 ~i~~~   71 (356)
T PRK11650         67 VVNEL   71 (356)
T ss_pred             ECCCC
Confidence            88643

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.51  E-value=1.2e-07  Score=88.51  Aligned_cols=64  Identities=20%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++. +.|.
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~g~   65 (253)
T TIGR02323         3 LLQVSGLSKSYGG--GKGCRDVSFDL----------YPGEVLGIVGESGSGKSTLLGCLAGRLAPD----HGTAT-YIMR   65 (253)
T ss_pred             eEEEeeeEEEeCC--ceEeecceEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEE-Eecc
Confidence            3678899998864  23799999998          899999999999999999999999998754    68884 6665


Q ss_pred             c
Q 019312          101 D  101 (343)
Q Consensus       101 ~  101 (343)
                      +
T Consensus        66 ~   66 (253)
T TIGR02323        66 S   66 (253)
T ss_pred             c
Confidence            5

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.4e-07  Score=89.26  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~   98 (343)
                      ..+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...+. +....|++. +.
T Consensus        19 ~~l~~~nl~~~~~~--~~il~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~   85 (267)
T PRK14237         19 IALSTKDLHVYYGK--KEAIKGIDMQF----------EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL-YR   85 (267)
T ss_pred             eEEEEeeEEEEECC--eeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE-EC
Confidence            35889999999863  34899999998          899999999999999999999999987521 012367774 67


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        86 g~~~~   90 (267)
T PRK14237         86 GIDIN   90 (267)
T ss_pred             CEEcc
Confidence            77764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=7.7e-08  Score=94.94  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         6 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~~~g~   68 (351)
T PRK11432          6 FVVLKNITKRFGS--NTVIDNLNLTI----------KQGTMVTLLGPSGCGKTTVLRLVAGLEKPT----EGQI-FIDGE   68 (351)
T ss_pred             EEEEEeEEEEECC--eEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence            5788899999863  34799999998          899999999999999999999999998854    7888 48888


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        69 ~i~~   72 (351)
T PRK11432         69 DVTH   72 (351)
T ss_pred             ECCC
Confidence            8864

>PRK07261 topology modulation protein; Provisional

Probab=98.51  E-value=9.2e-07  Score=78.46  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=31.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .|+|+|++|||||||++.|++.++ .++|+.|.+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~~   35 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTLH   35 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCEE
Confidence            589999999999999999999998 8888899884

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.51  E-value=1.1e-07  Score=91.53  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|.
T Consensus         4 ~i~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~----~G~i-~~~g~   66 (303)
T TIGR01288         4 AIDLVGVSKSYGD--KVVVNDLSFTI----------ARGECFGLLGPNGAGKSTIARMLLGMISPD----RGKI-TVLGE   66 (303)
T ss_pred             EEEEEeEEEEeCC--eEEEcceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence            4778899998864  34899999998          899999999999999999999999988754    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~~~   69 (303)
T TIGR01288        67 PVP   69 (303)
T ss_pred             ECc
Confidence            764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1e-07  Score=89.87  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+.+.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.    .|++. +.|
T Consensus         6 ~~l~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g   68 (265)
T PRK10253          6 ARLRGEQLTLGYGK--YTVAENLTVEI----------PDGHFTAIIGPNGCGKSTLLRTLSRLMTPA----HGHVW-LDG   68 (265)
T ss_pred             cEEEEEEEEEEECC--EEEeeecceEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CcEEE-ECC
Confidence            56788999999974  34899999998          899999999999999999999999998754    68884 778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        69 ~~~~~   73 (265)
T PRK10253         69 EHIQH   73 (265)
T ss_pred             EEhhh
Confidence            77753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.6e-07  Score=89.81  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             CCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CC
Q 019312            9 PTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PS   86 (343)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~   86 (343)
                      |++..-..+....+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...  |.
T Consensus        27 ~~~~~~~~~~~~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~   94 (286)
T PRK14275         27 PERKKVSGGGKPHVVAKNFSIYYGE--FEAVKKVNADI----------LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS   94 (286)
T ss_pred             ccccccCCCCceEEEEeeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            3455555556667899999999964  24899999998          8999999999999999999999999743  10


Q ss_pred             ceecCCceEEEeccccc
Q 019312           87 EIINSDKMQVYKGLDIT  103 (343)
Q Consensus        87 eIIs~Ds~qvy~gl~I~  103 (343)
                       ..+.|++ .+.|.++.
T Consensus        95 -~~~~G~I-~~~g~~i~  109 (286)
T PRK14275         95 -CHTTGAL-MFDGEDIY  109 (286)
T ss_pred             -CCCceEE-EECCEEhh
Confidence             0126777 47777764

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.50  E-value=1.5e-07  Score=84.12  Aligned_cols=52  Identities=23%  Similarity=0.424  Sum_probs=45.1

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++.
T Consensus         6 ~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~~~   57 (190)
T TIGR01166         6 EVLKGLNFAA----------ERGEVLALLGANGAGKSTLLLHLNGLLRPQ----SGAV-LIDGEPLD   57 (190)
T ss_pred             ceecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceeE-EECCEEcc
Confidence            3889999998          899999999999999999999999988754    6888 47777763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.8e-07  Score=88.39  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...... -.+.|++. +.|
T Consensus        21 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g   87 (268)
T PRK14248         21 ILEVKDLSIYYGE--KRAVNDISMDI----------EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL-YEG   87 (268)
T ss_pred             eEEEEEEEEEeCC--ceeeeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE-ECC
Confidence            5889999999973  34899999998          8999999999999999999999999753000 01267774 777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        88 ~~i~~   92 (268)
T PRK14248         88 LNILD   92 (268)
T ss_pred             EEccc
Confidence            77754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.50  E-value=1.6e-07  Score=89.10  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=57.5

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CCceecCCce
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKM   94 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~   94 (343)
                      |...-+++.++++.|+.  ..+++++++++          .+|++++|+|+||||||||++.|++.+.  +. ....|++
T Consensus        20 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i   86 (271)
T PRK14238         20 PKKVVFDTQNLNLWYGE--DHALKNINLDI----------HENEVTAIIGPSGCGKSTYIKTLNRMVELVPS-VKTTGKI   86 (271)
T ss_pred             CCceEEEEeeeEEEECC--cceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhccCCCC-CCCceeE
Confidence            33346889999999874  24899999998          8899999999999999999999999875  10 0126888


Q ss_pred             EEEeccccc
Q 019312           95 QVYKGLDIT  103 (343)
Q Consensus        95 qvy~gl~I~  103 (343)
                      . +.|.++.
T Consensus        87 ~-~~g~~~~   94 (271)
T PRK14238         87 L-YRDQNIF   94 (271)
T ss_pred             E-ECCEEcc
Confidence            4 7777764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.50  E-value=1.4e-07  Score=87.47  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .+.|.++
T Consensus         2 ~i~~l~~~~~~~--~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~i~g~~~   64 (237)
T TIGR00968         2 EIANISKRFGSF--QALDDVNLEV----------PTGSLVALLGPSGSGKSTLLRIIAGLEQPD----SGRI-RLNGQDA   64 (237)
T ss_pred             EEEEEEEEECCe--eeeeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence            567788888742  4899999998          899999999999999999999999988743    7888 4777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (237)
T TIGR00968        65 TR   66 (237)
T ss_pred             Cc
Confidence            53

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.50  E-value=1.2e-07  Score=93.66  Aligned_cols=69  Identities=20%  Similarity=0.149  Sum_probs=58.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~----~G~I-~i~g~   66 (353)
T TIGR03265         4 YLSIDNIRKRFGA--FTALKDISLSV----------KKGEFVCLLGPSGCGKTTLLRIIAGLERQT----AGTI-YQGGR   66 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHCCCCCC----ceEE-EECCE
Confidence            3778899998874  33789999998          889999999999999999999999998754    7888 47888


Q ss_pred             cccCCC
Q 019312          101 DITTNK  106 (343)
Q Consensus       101 ~I~T~k  106 (343)
                      ++....
T Consensus        67 ~~~~~~   72 (353)
T TIGR03265        67 DITRLP   72 (353)
T ss_pred             ECCCCC
Confidence            886543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.50  E-value=1.4e-07  Score=86.37  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+..  ....++++++++          .+|++++|+||||||||||++.|++.+++.    +|++ .+.|
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i----------~~G~~~~I~G~nGsGKStLl~~l~G~~~~~----~G~i-~~~g   66 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEI----------NPGEIVILTGPSGSGKTTLLTLIGGLRSVQ----EGSL-KVLG   66 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECC
Confidence            4677888887643  245899999998          889999999999999999999999988754    6777 4677


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        67 ~~~~~   71 (220)
T TIGR02982        67 QELYG   71 (220)
T ss_pred             EEhHh
Confidence            76653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.50  E-value=1.5e-07  Score=88.90  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             ceeecccCCcCCcc-------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312           21 HYSSFYSPFLHPKR-------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK   93 (343)
Q Consensus        21 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds   93 (343)
                      -+++.++++.|...       ...+++++++++          .+|++++|+||||||||||++.|++.++|.    .|+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~----~G~   69 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL----------REGQTLAIIGENGSGKSTLAKMLAGMIEPT----SGE   69 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEe----------cCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----CCE
Confidence            36788888887521       124899999998          899999999999999999999999998754    688


Q ss_pred             eEEEeccccc
Q 019312           94 MQVYKGLDIT  103 (343)
Q Consensus        94 ~qvy~gl~I~  103 (343)
                      + .+.|.++.
T Consensus        70 i-~~~g~~~~   78 (267)
T PRK15112         70 L-LIDDHPLH   78 (267)
T ss_pred             E-EECCEECC
Confidence            8 47787764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.3e-07  Score=88.62  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++. +.|.+
T Consensus         3 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i~-~~g~~   65 (255)
T PRK11231          3 LRTENLTVGYGT--KRILNDLSLSL----------PTGKITALIGPNGCGKSTLLKCFARLLTPQ----SGTVF-LGDKP   65 (255)
T ss_pred             EEEEeEEEEECC--EEEEeeeeeEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----CcEEE-ECCEE
Confidence            567888888864  34899999998          899999999999999999999999988754    68884 77776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        66 ~~   67 (255)
T PRK11231         66 IS   67 (255)
T ss_pred             hH
Confidence            64

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.49  E-value=2e-07  Score=104.58  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=66.7

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |.++.|++.+++.+|.++-|.+|+++++++          .+++-|+|+|.||||||||+.+|.+...+.    .|.+ .
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I----------~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~----~G~I-~ 1198 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTI----------KPGEKVGIVGRTGAGKSSLILALFRLVEPA----EGEI-L 1198 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCcchhcCceEEE----------cCCceEEEeCCCCCCHHHHHHHHHHhcCcc----CCeE-E
Confidence            788999999999999999999999999998          899999999999999999999999998754    6888 5


Q ss_pred             EecccccC
Q 019312           97 YKGLDITT  104 (343)
Q Consensus        97 y~gl~I~T  104 (343)
                      .+|.||.+
T Consensus      1199 IDgvdI~~ 1206 (1381)
T KOG0054|consen 1199 IDGVDISK 1206 (1381)
T ss_pred             EcCeeccc
Confidence            88888753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.49  E-value=1.9e-07  Score=91.38  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=59.5

Q ss_pred             ceeecccCCcCCc--ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPK--RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -+++.+++..|+.  +...+++++++++          .+|++++|+|+||||||||++.|++.+++.. +.+|++ .|.
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~-~~sG~I-~~~   79 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSL----------RAGETLGIVGESGSGKSQTAFALMGLLAANG-RIGGSA-TFN   79 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCCC-CCCeEE-EEC
Confidence            4678888888764  2345899999998          8999999999999999999999999987532 337888 589


Q ss_pred             cccccCC
Q 019312           99 GLDITTN  105 (343)
Q Consensus        99 gl~I~T~  105 (343)
                      |.++...
T Consensus        80 G~~i~~~   86 (330)
T PRK09473         80 GREILNL   86 (330)
T ss_pred             CEECCcC
Confidence            9888653

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.49  E-value=1.4e-07  Score=88.52  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g   66 (257)
T PRK10619          4 NKLNVIDLHKRYGE--HEVLKGVSLQA----------NAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGSI-VVNG   66 (257)
T ss_pred             ccEEEeeeEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-EECC
Confidence            34788999999874  24899999998          899999999999999999999999998754    6888 4777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        67 ~~~~   70 (257)
T PRK10619         67 QTIN   70 (257)
T ss_pred             EEcc
Confidence            7664

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.49  E-value=1.9e-07  Score=90.00  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.+
T Consensus         3 l~~~~l~~~~~~--~~~l~~is~~i----------~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~----~G~i~-i~g~~   65 (301)
T TIGR03522         3 IRVSSLTKLYGT--QNALDEVSFEA----------QKGRIVGFLGPNGAGKSTTMKIITGYLPPD----SGSVQ-VCGED   65 (301)
T ss_pred             EEEEEEEEEECC--EEEEEEeEEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEE
Confidence            678888888863  34899999998          899999999999999999999999998754    78884 77887


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (301)
T TIGR03522        66 VLQ   68 (301)
T ss_pred             ccc
Confidence            754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.4e-07  Score=88.03  Aligned_cols=70  Identities=13%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+... -.+.|++. +.|
T Consensus         6 ~l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g   72 (253)
T PRK14242          6 KMEARGLSFFYGD--FQALHDISLEF----------EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL-LDG   72 (253)
T ss_pred             EEEEeeeEEEECC--eeeecceeEEE----------eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE-ECC
Confidence            4788999999864  34899999998          8999999999999999999999999753100 01367774 777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        73 ~~i~   76 (253)
T PRK14242         73 ENIY   76 (253)
T ss_pred             EEcc
Confidence            7764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.49  E-value=3.5e-07  Score=80.60  Aligned_cols=37  Identities=19%  Similarity=0.521  Sum_probs=34.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      +|+|.||.||||||+++.||+.++ .++||+|.+  |+++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~i--FR~~   38 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTI--FREM   38 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC-CceeeccHH--HHHH
Confidence            688999999999999999999999 999999988  7655

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.49  E-value=1.7e-07  Score=88.78  Aligned_cols=62  Identities=24%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      +++..|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++..
T Consensus        29 ~~~~~~~~--~~il~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~----~G~i-~i~g~~~~~   90 (269)
T cd03294          29 EILKKTGQ--TVGVNDVSLDV----------REGEIFVIMGLSGSGKSTLLRCINRLIEPT----SGKV-LIDGQDIAA   90 (269)
T ss_pred             hhhhhcCC--ceEeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EECCEEccc
Confidence            45555442  23789999998          899999999999999999999999998754    6888 477777643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2.2e-07  Score=87.13  Aligned_cols=70  Identities=11%  Similarity=0.043  Sum_probs=55.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++...+.+ -...|++. +.|
T Consensus         4 ~l~i~~v~~~~~~~--~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~-~~g   70 (258)
T PRK14241          4 RIDVKDLNIYYGSF--HAVEDVNLNI----------EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL-LDG   70 (258)
T ss_pred             cEEEeeEEEEECCE--eeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE-ECC
Confidence            46788999998743  4899999998          8899999999999999999999999875210 01267884 777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        71 ~~~~   74 (258)
T PRK14241         71 EDLY   74 (258)
T ss_pred             Eecc
Confidence            7764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.49  E-value=1.3e-07  Score=88.53  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+++.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~--~~il~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i-~~~g~~   64 (256)
T TIGR03873         2 LRLSRVSWSAGG--RLIVDGVDVTA----------PPGSLTGLLGPNGSGKSTLLRLLAGALRPD----AGTV-DLAGVD   64 (256)
T ss_pred             ceEEeEEEEECC--EEEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CCEE-EECCEE
Confidence            467788888864  34899999998          899999999999999999999999998754    6888 477777


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        65 ~~~   67 (256)
T TIGR03873        65 LHG   67 (256)
T ss_pred             ccc
Confidence            653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.49  E-value=1.8e-07  Score=103.20  Aligned_cols=74  Identities=20%  Similarity=0.287  Sum_probs=62.3

Q ss_pred             CCccceeecccCCcCCccccc-ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRS-RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      ...+.|++.+|+|.||.++.. +++++++++          ++|+-++|+|||||||||+...|-+.++|.    .|.+ 
T Consensus       983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i----------~~GqTvALVG~SGsGKSTvI~LLeRfYdp~----~G~V- 1047 (1228)
T KOG0055|consen  983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSI----------RAGQTVALVGPSGSGKSTVISLLERFYDPD----AGKV- 1047 (1228)
T ss_pred             cceeEEEEeeeEeeCCCCCCchhhcCCcEEe----------cCCCEEEEECCCCCCHHHHHHHHHHhcCCC----CCeE-
Confidence            456889999999999976633 899999998          999999999999999999999999999865    6777 


Q ss_pred             EEecccccCC
Q 019312           96 VYKGLDITTN  105 (343)
Q Consensus        96 vy~gl~I~T~  105 (343)
                      ...|.||.+-
T Consensus      1048 ~IDg~dik~l 1057 (1228)
T KOG0055|consen 1048 KIDGVDIKDL 1057 (1228)
T ss_pred             EECCcccccC
Confidence            3667766543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.49  E-value=1.7e-07  Score=107.39  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             ccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           19 QQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      ...+++.+|+|.||.++ ..+|+++++++          ++|+.++|+||||||||||+..|.+.++|
T Consensus      1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i----------~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSC----------DSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             CceEEEEEEEEECCCCCCCccccCeeEEE----------cCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            36799999999999643 24899999998          99999999999999999999999999885

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.49  E-value=1.9e-07  Score=85.24  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +-++.|.|+...+ +++++++++          .+|++++|+||||||||||++.|++..++.    .|++. +.|.++.
T Consensus         3 ~~~~~~~~~~~~~-il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~----~G~i~-~~g~~~~   66 (218)
T cd03290           3 VTNGYFSWGSGLA-TLSNINIRI----------PTGQLTMIVGQVGCGKSSLLLAILGEMQTL----EGKVH-WSNKNES   66 (218)
T ss_pred             eeeeEEecCCCCc-ceeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CCeEE-ECCcccc
Confidence            4567788876643 899999998          889999999999999999999999998744    68884 6676654


Q ss_pred             C
Q 019312          104 T  104 (343)
Q Consensus       104 T  104 (343)
                      .
T Consensus        67 ~   67 (218)
T cd03290          67 E   67 (218)
T ss_pred             c
Confidence            3

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=1.4e-07  Score=93.98  Aligned_cols=70  Identities=19%  Similarity=0.208  Sum_probs=58.7

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.
T Consensus        17 ~~~l~l~~v~~~~~~--~~~l~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~i~   79 (377)
T PRK11607         17 TPLLEIRNLTKSFDG--QHAVDDVSLTI----------YKGEIFALLGASGCGKSTLLRMLAGFEQPT----AGQI-MLD   79 (377)
T ss_pred             CceEEEEeEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EEC
Confidence            446889999998864  24789999998          889999999999999999999999998754    6888 478


Q ss_pred             cccccCC
Q 019312           99 GLDITTN  105 (343)
Q Consensus        99 gl~I~T~  105 (343)
                      |.++...
T Consensus        80 g~~i~~~   86 (377)
T PRK11607         80 GVDLSHV   86 (377)
T ss_pred             CEECCCC
Confidence            8887543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.48  E-value=1.5e-07  Score=84.57  Aligned_cols=70  Identities=20%  Similarity=0.241  Sum_probs=54.0

Q ss_pred             ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      .+++.++++.|+..  ...+++++++++          .+|++++|+||||||||||++.|++.....  .+.|++ .+.
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~~~G~i-~~~   69 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYV----------KPGTLTALMGESGAGKTTLLDVLAGRKTAG--VITGEI-LIN   69 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEE-EEC
Confidence            36788899998752  134899999998          889999999999999999999999864200  126777 467


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        70 g~~~~   74 (192)
T cd03232          70 GRPLD   74 (192)
T ss_pred             CEehH
Confidence            76663

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.48  E-value=2.1e-07  Score=97.44  Aligned_cols=70  Identities=23%  Similarity=0.291  Sum_probs=59.8

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+... .+++++++++          ++|+.++|+||||||||||++.|++..+|.    .|++ .+.
T Consensus       332 ~~~i~~~~v~~~y~~~~-~~l~~i~~~i----------~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i-~~~  395 (585)
T TIGR01192       332 KGAVEFRHITFEFANSS-QGVFDVSFEA----------KAGQTVAIVGPTGAGKTTLINLLQRVYDPT----VGQI-LID  395 (585)
T ss_pred             CCeEEEEEEEEECCCCC-ccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHccCCCCC----CCEE-EEC
Confidence            35699999999998643 3799999998          899999999999999999999999998865    6888 477


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       396 g~~~~~  401 (585)
T TIGR01192       396 GIDINT  401 (585)
T ss_pred             CEEhhh
Confidence            877653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.47  E-value=1.6e-07  Score=87.48  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl  100 (343)
                      +++.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++..+|.+ -...|++. +.|.
T Consensus         2 l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~-~~g~   68 (247)
T TIGR00972         2 IEIENLNLFYGEK--EALKNINLDI----------PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL-FDGQ   68 (247)
T ss_pred             EEEEEEEEEECCe--eeecceeEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEE-ECCE
Confidence            4678888888643  3899999998          8999999999999999999999999886320 11257774 7777


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        69 ~~~~   72 (247)
T TIGR00972        69 DIYD   72 (247)
T ss_pred             Eccc
Confidence            7653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.47  E-value=1.8e-07  Score=92.29  Aligned_cols=67  Identities=15%  Similarity=0.198  Sum_probs=56.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.+
T Consensus         3 L~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~----~G~I-~i~g~~   65 (353)
T PRK10851          3 IEIANIKKSFGR--TQVLNDISLDI----------PSGQMVALLGPSGSGKTTLLRIIAGLEHQT----SGHI-RFHGTD   65 (353)
T ss_pred             EEEEEEEEEeCC--eEEEEEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence            567788888864  34899999998          899999999999999999999999998754    7888 488888


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        66 i~~~   69 (353)
T PRK10851         66 VSRL   69 (353)
T ss_pred             CCCC
Confidence            8643

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.47  E-value=2.1e-07  Score=84.84  Aligned_cols=63  Identities=21%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.    .+.++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~----~~~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   62 (213)
T TIGR01277         2 ALDKVRYEYEH----LPMEFDLNV----------ADGEIVAIMGPSGAGKSTLLNLIAGFIEPA----SGSI-KVNDQSH   62 (213)
T ss_pred             eEEeeeEEeCC----cceeeEEEE----------eCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCEEc
Confidence            56788888862    356888887          899999999999999999999999998754    6888 4777776


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      .+
T Consensus        63 ~~   64 (213)
T TIGR01277        63 TG   64 (213)
T ss_pred             cc
Confidence            53

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.8e-07  Score=92.91  Aligned_cols=67  Identities=15%  Similarity=0.051  Sum_probs=56.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         3 ~l~i~~l~~~~~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~----~G~I-~~~g~   65 (369)
T PRK11000          3 SVTLRNVTKAYGD--VVISKDINLDI----------HEGEFVVFVGPSGCGKSTLLRMIAGLEDIT----SGDL-FIGEK   65 (369)
T ss_pred             EEEEEEEEEEeCC--eEEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence            4678889988864  24899999998          889999999999999999999999998754    6888 47888


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        66 ~i~~   69 (369)
T PRK11000         66 RMND   69 (369)
T ss_pred             ECCC
Confidence            8753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.47  E-value=1.9e-07  Score=86.29  Aligned_cols=65  Identities=20%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      .+.++++.|+..  ..++++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~--~il~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~----~G~i-~~~g~~~   64 (232)
T cd03300           2 ELENVSKFYGGF--VALDGVSLDI----------KEGEFFTLLGPSGCGKTTLLRLIAGFETPT----SGEI-LLDGKDI   64 (232)
T ss_pred             EEEeEEEEeCCe--eeeccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEEc
Confidence            567788888643  4899999998          889999999999999999999999998753    6888 4778777


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        65 ~~   66 (232)
T cd03300          65 TN   66 (232)
T ss_pred             Cc
Confidence            54

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.8e-07  Score=87.36  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|. .-...|++ .+.|
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g   70 (253)
T PRK14267          4 AIETVNLRVYYGS--NHVIKGVDLKI----------PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV-RLFG   70 (253)
T ss_pred             eEEEEeEEEEeCC--eeeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE-EECC
Confidence            4678899998864  34899999998          899999999999999999999999987631 00125777 3677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        71 ~~i~   74 (253)
T PRK14267         71 RNIY   74 (253)
T ss_pred             EEcc
Confidence            7764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.47  E-value=1.7e-07  Score=85.87  Aligned_cols=64  Identities=19%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.++
T Consensus         2 ~l~~v~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i~-~~~~~~   64 (223)
T TIGR03740         2 ETKNLSKRFGK--QTAVNNISLTV----------PKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEII-FDGHPW   64 (223)
T ss_pred             EEEeEEEEECC--EEEEeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE-ECCEec
Confidence            56778887763  34899999998          899999999999999999999999998754    68884 666655


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (223)
T TIGR03740        65 T   65 (223)
T ss_pred             c
Confidence            3

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=2.1e-07  Score=87.47  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~q   95 (343)
                      .....+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++. .-...|++.
T Consensus         8 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   75 (258)
T PRK14268          8 VAQPQIKVENLNLWYGE--KQALKNVSMQI----------PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS   75 (258)
T ss_pred             ccceeEEEeeeEEEeCC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence            33456889999998863  34899999998          899999999999999999999999987521 001268884


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                       +.|.++.
T Consensus        76 -~~g~~i~   82 (258)
T PRK14268         76 -IEGEDIY   82 (258)
T ss_pred             -ECCEEcc
Confidence             7777764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.47  E-value=1.7e-07  Score=86.18  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~   98 (343)
                      ..++..++.+.|-.  ..+|+++++.+          +++++.+|+||||||||||++++.+.....+ +=-.|.+ .|.
T Consensus         6 ~~~~~~~l~~yYg~--~~aL~~i~l~i----------~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v-~~~   72 (253)
T COG1117           6 PAIEVRDLNLYYGD--KHALKDINLDI----------PKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV-LLD   72 (253)
T ss_pred             ceeEecceeEEECc--hhhhccCceec----------cCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE-EEC
Confidence            34566777777773  44799999997          8899999999999999999999999865221 1114666 588


Q ss_pred             cccccCCCCCc
Q 019312           99 GLDITTNKIPS  109 (343)
Q Consensus        99 gl~I~T~kp~~  109 (343)
                      |.+|-..+...
T Consensus        73 g~ni~~~~~d~   83 (253)
T COG1117          73 GKNIYDPKVDV   83 (253)
T ss_pred             CeeccCCCCCH
Confidence            88886654443

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=2.3e-07  Score=90.69  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=57.5

Q ss_pred             ceeecccCCcCCcc--------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           21 HYSSFYSPFLHPKR--------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        21 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      -+++.+++..|+..        ...+++++++++          .+|++++|+|+||||||||++.|++.+++.    .|
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~----~G   70 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL----------ERGKTLAVVGESGCGKSTLARLLTMIETPT----GG   70 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE----------CCCCEEEEECCCCCcHHHHHHHHHcCCCCC----Cc
Confidence            46778888777642        234899999998          899999999999999999999999998753    78


Q ss_pred             ceEEEecccccCC
Q 019312           93 KMQVYKGLDITTN  105 (343)
Q Consensus        93 s~qvy~gl~I~T~  105 (343)
                      ++ .+.|.++...
T Consensus        71 ~i-~~~g~~l~~~   82 (327)
T PRK11308         71 EL-YYQGQDLLKA   82 (327)
T ss_pred             EE-EECCEEcCcC
Confidence            88 4888887643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.9e-07  Score=87.05  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++..++. .....|++ .+.|
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g   69 (250)
T PRK14240          3 KISVKDLDLFYGDF--QALKKINLDI----------EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV-LLDG   69 (250)
T ss_pred             eEEEEEEEEEECCc--eeeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE-EECC
Confidence            57888999998742  4899999998          899999999999999999999999976421 11236888 4777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        70 ~~~~   73 (250)
T PRK14240         70 QDIY   73 (250)
T ss_pred             EEcc
Confidence            7664

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=2e-07  Score=87.83  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|..  +.+++++++++          .+|++++|+||||||||||++.|++..++ ++|...|++ .+.|
T Consensus         7 ~l~~~nl~~~~~~--~~il~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i-~~~g   73 (261)
T PRK14258          7 AIKVNNLSFYYDT--QKILEGVSMEI----------YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV-EFFN   73 (261)
T ss_pred             eEEEeeEEEEeCC--eeEeeceEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE-EECC
Confidence            5889999999863  34899999998          89999999999999999999999999874 244556777 4667


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        74 ~~i~   77 (261)
T PRK14258         74 QNIY   77 (261)
T ss_pred             EEhh
Confidence            7663

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.8e-07  Score=87.18  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++.. ..+.|.+ .+.|
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~i~~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i-~i~g   69 (250)
T PRK14262          3 IIEIENFSAYYGE--KKAVKNVTMKI----------FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI-YFKG   69 (250)
T ss_pred             eEEEEeeEEEeCC--ceeEeeeeEee----------cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECC
Confidence            3678899998863  34899999998          8999999999999999999999999875210 0126777 4677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        70 ~~~~   73 (250)
T PRK14262         70 QDIY   73 (250)
T ss_pred             EEcc
Confidence            7664

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.46  E-value=2.8e-07  Score=81.47  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++++|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g-~~~~~~g~~   37 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYG-FTHLSTGDL   37 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHH
Confidence            46999999999999999999999998 888888876

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.9e-07  Score=86.97  Aligned_cols=69  Identities=17%  Similarity=0.110  Sum_probs=54.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEecc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKGL  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~gl  100 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..++. +....|++ .+.|.
T Consensus         4 l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~   70 (250)
T PRK14247          4 IEIRDLKVSFGQ--VEVLDGVNLEI----------PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV-YLDGQ   70 (250)
T ss_pred             EEEEeeEEEECC--eeeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE-EECCE
Confidence            678888888864  24899999998          899999999999999999999999987521 01125777 47777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        71 ~i~   73 (250)
T PRK14247         71 DIF   73 (250)
T ss_pred             ECC
Confidence            764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.46  E-value=1.8e-07  Score=93.96  Aligned_cols=67  Identities=15%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|.+ .+.|.
T Consensus         3 ~L~~~nls~~y~~--~~vL~~vs~~i----------~~Geiv~liGpNGaGKSTLLk~LaGll~p~----sG~I-~l~G~   65 (402)
T PRK09536          3 MIDVSDLSVEFGD--TTVLDGVDLSV----------REGSLVGLVGPNGAGKTTLLRAINGTLTPT----AGTV-LVAGD   65 (402)
T ss_pred             eEEEeeEEEEECC--EEEEEeeEEEE----------CCCCEEEEECCCCchHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence            3678899999874  34899999998          899999999999999999999999998754    7888 47788


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        66 ~i~~   69 (402)
T PRK09536         66 DVEA   69 (402)
T ss_pred             EcCc
Confidence            7754

>PLN02199 shikimate kinase

Probab=98.46  E-value=2.7e-07  Score=88.81  Aligned_cols=114  Identities=14%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      ++..|+|+|.+||||||+++.||+.++ ..+|+.|.+  ....           ..+.     .+....+ .+....|++
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg-~~fIDtD~l--Ie~~-----------~~G~-----sI~eIf~-~~GE~~FR~  160 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLG-YTFFDCDTL--IEQA-----------MNGT-----SVAEIFV-HHGENFFRG  160 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEehHHH--HHHH-----------hcCC-----CHHHHHH-HhCHHHHHH
Confidence            377899999999999999999999998 889999976  1110           0010     1111222 567788999


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      ...+++.++.......|-+||....         +|....+            +. ...++||+.+.+.|.+||..
T Consensus       161 ~E~e~L~~L~~~~~~VIStGGG~V~---------~~~n~~~------------L~-~G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        161 KETDALKKLSSRYQVVVSTGGGAVI---------RPINWKY------------MH-KGISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             HHHHHHHHHHhcCCEEEECCCcccC---------CHHHHHH------------Hh-CCeEEEEECCHHHHHHHHhh
Confidence            9999999987766666667775321         2211000            11 23579999999999999974

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=2.1e-07  Score=87.40  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      -+.+.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...+.+ .-..|++. +.|
T Consensus        12 ~l~i~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~-~~g   78 (259)
T PRK14274         12 VYQINGMNLWYGQ--HHALKNINLSI----------PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN-YNG   78 (259)
T ss_pred             eEEEeeEEEEECC--eeeEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE-ECC
Confidence            4788999999874  34899999998          8899999999999999999999999875211 01257774 777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        79 ~~~~   82 (259)
T PRK14274         79 SNIL   82 (259)
T ss_pred             EEcc
Confidence            7664

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.45  E-value=2.2e-07  Score=86.15  Aligned_cols=64  Identities=27%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|..  + .++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~--~-~l~~is~~i----------~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~----~G~v-~i~g~~~   63 (235)
T cd03299           2 KVENLSKDWKE--F-KLKNVSLEV----------ERGDYFVILGPTGSGKSVLLETIAGFIKPD----SGKI-LLNGKDI   63 (235)
T ss_pred             eeEeEEEEeCC--c-eeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCcCCC----ceEE-EECCEEc
Confidence            56777787763  2 699999998          889999999999999999999999988754    6888 4788777


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        64 ~~   65 (235)
T cd03299          64 TN   65 (235)
T ss_pred             Cc
Confidence            54

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.2e-07  Score=86.55  Aligned_cols=69  Identities=16%  Similarity=0.139  Sum_probs=54.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+.  +..++++++++          .+|++++|+||||||||||++.|++..++. ..+.|++ .+.|.+
T Consensus         3 ~~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~G~i-~~~g~~   68 (246)
T PRK14269          3 AKTTNLNLFYGK--KQALFDINMQI----------EQNKITALIGASGCGKSTFLRCFNRMNDKI-AKIDGLV-EIEGKD   68 (246)
T ss_pred             eeeeeeEEEECC--EeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCCceEE-EECCEe
Confidence            467888888873  34899999998          889999999999999999999999986410 1126888 477877


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        69 i~~   71 (246)
T PRK14269         69 VKN   71 (246)
T ss_pred             ccc
Confidence            753

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.2e-07  Score=86.66  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...+.+ ....|++ .+.|
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v-~i~g   70 (251)
T PRK14251          4 IISAKDVHLSYGN--YEALHGISLDF----------EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI-KFEG   70 (251)
T ss_pred             eEEEEeeEEEECC--eeeeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE-EECC
Confidence            4788999999864  34899999998          8899999999999999999999999874100 0126777 4777


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        71 ~~~~   74 (251)
T PRK14251         71 QNIY   74 (251)
T ss_pred             EEcc
Confidence            7764

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.45  E-value=1.6e-06  Score=89.39  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+.|+.+.           .++.+|+|.||+||||||+++.|++.++ ..+++.|.+  |+.+
T Consensus       274 LIDN~~~~-----------~~~~ii~i~G~sgsGKst~a~~la~~l~-~~~~d~g~~--YR~~  322 (512)
T PRK13477        274 LIDNVFLM-----------KRQPIIAIDGPAGAGKSTVTRAVAKKLG-LLYLDTGAM--YRAV  322 (512)
T ss_pred             EEeeeEec-----------cCCcEEEEECCCCCCHHHHHHHHHHHcC-CeEecCCce--ehHH
Confidence            55677665           3568999999999999999999999998 899999999  8875

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.45  E-value=2.1e-07  Score=80.20  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ++.++++.|+..  ..++++++..          .+|++++|+||||||||||++.|++..++.    .|++. +.|
T Consensus         2 ~~~~l~~~~~~~--~~l~~~~~~~----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~-~~~   61 (144)
T cd03221           2 ELENLSKTYGGK--LLLKDISLTI----------NPGDRIGLVGRNGAGKSTLLKLIAGELEPD----EGIVT-WGS   61 (144)
T ss_pred             EEEEEEEEECCc--eEEEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----ceEEE-ECC
Confidence            566788877643  3899999998          899999999999999999999999998753    67763 444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.5e-07  Score=86.42  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++...+.. .-..|++ .+.|
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i-~~~g   70 (251)
T PRK14270          4 KMESKNLNLWYGE--KQALNDINLPI----------YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV-LLDG   70 (251)
T ss_pred             EEEEEEeEEEECC--eeeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE-EECC
Confidence            4678889988863  34899999998          8999999999999999999999999865310 0125777 4777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        71 ~~i~~   75 (251)
T PRK14270         71 KNIYD   75 (251)
T ss_pred             Eeccc
Confidence            77753

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.44  E-value=2.6e-07  Score=90.51  Aligned_cols=69  Identities=10%  Similarity=0.102  Sum_probs=56.5

Q ss_pred             eeecccCCcCCcc-----------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           22 YSSFYSPFLHPKR-----------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        22 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      +++.+++..|+..           ...+++++++++          .+|++++|+|+||||||||++.|++.+.+.    
T Consensus         9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i----------~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~----   74 (331)
T PRK15079          9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL----------YEGETLGVVGESGCGKSTFARAIIGLVKAT----   74 (331)
T ss_pred             EEEeCeEEEECCCCccccccccCCceEEEeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHHCCCCCC----
Confidence            5677777766531           234889999998          899999999999999999999999998753    


Q ss_pred             CCceEEEecccccCC
Q 019312           91 SDKMQVYKGLDITTN  105 (343)
Q Consensus        91 ~Ds~qvy~gl~I~T~  105 (343)
                      +|++ .|.|.++...
T Consensus        75 ~G~I-~~~G~~i~~~   88 (331)
T PRK15079         75 DGEV-AWLGKDLLGM   88 (331)
T ss_pred             CcEE-EECCEECCcC
Confidence            7998 5889888643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=2.3e-07  Score=87.16  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+|+||||||||++.|++.+++. ..+..|++. +.|
T Consensus         7 ~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~-~~g   73 (259)
T PRK14260          7 AIKVKDLSFYYNT--SKAIEGISMDI----------YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD-FFG   73 (259)
T ss_pred             eEEEEEEEEEECC--eEeecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE-ECC
Confidence            5788899998863  34899999998          899999999999999999999999987631 122367774 677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        74 ~~i~   77 (259)
T PRK14260         74 QNIY   77 (259)
T ss_pred             Eecc
Confidence            7664

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.44  E-value=1.9e-07  Score=86.76  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=53.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..  ++.    .|++ .+.|
T Consensus         2 i~~~nl~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~----~G~i-~~~g   64 (248)
T PRK09580          2 LSIKDLHVSVED--KAILRGLNLEV----------RPGEVHAIMGPNGSGKSTLSATLAGREDYEVT----GGTV-EFKG   64 (248)
T ss_pred             eEEEEEEEEeCC--eeeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHcCCccCCCC----ceEE-EECC
Confidence            467888888874  23899999998          899999999999999999999999984  333    6777 4777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        65 ~~~~~   69 (248)
T PRK09580         65 KDLLE   69 (248)
T ss_pred             Ccccc
Confidence            76643

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.44  E-value=2.3e-07  Score=86.51  Aligned_cols=67  Identities=21%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~   98 (343)
                      -+++.++++.|+..  .+++++++++          .+|++++|+||||||||||++.|++..  ++.    .|++ .+.
T Consensus         7 ~l~~~~l~~~~~~~--~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~----~G~i-~~~   69 (252)
T CHL00131          7 ILEIKNLHASVNEN--EILKGLNLSI----------NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL----EGDI-LFK   69 (252)
T ss_pred             eEEEEeEEEEeCCE--EeeecceeEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC----CceE-EEC
Confidence            36788999988742  4899999998          899999999999999999999999962  322    6888 467


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus        70 g~~~~~   75 (252)
T CHL00131         70 GESILD   75 (252)
T ss_pred             CEEccc
Confidence            776643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.44  E-value=2.1e-07  Score=92.71  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=57.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...+.    .|++ .+.|.
T Consensus        14 ~L~l~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~----~G~I-~~~g~   76 (375)
T PRK09452         14 LVELRGISKSFDG--KEVISNLDLTI----------NNGEFLTLLGPSGCGKTTVLRLIAGFETPD----SGRI-MLDGQ   76 (375)
T ss_pred             eEEEEEEEEEECC--eEEEeeeEEEE----------eCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence            3788899998864  23789999998          899999999999999999999999998854    7888 48888


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        77 ~i~~~   81 (375)
T PRK09452         77 DITHV   81 (375)
T ss_pred             ECCCC
Confidence            88643

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.44  E-value=2.3e-07  Score=83.90  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.  ...++++++++          .+|++++|+|+||||||||++.|++..++.    .|++ .+.|.++
T Consensus         2 ~i~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   64 (201)
T cd03231           2 EADELTCERDG--RALFSGLSFTL----------AAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV-LLNGGPL   64 (201)
T ss_pred             EEEEEEEEeCC--ceeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEec
Confidence            45677777753  24789999998          899999999999999999999999998754    6777 3666665


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        65 ~   65 (201)
T cd03231          65 D   65 (201)
T ss_pred             c
Confidence            3

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.44  E-value=7.9e-07  Score=78.53  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|++||||||+++.|++.+.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999885

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=2.5e-07  Score=86.44  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ...|+++++++          .+|++++|+||||||||||++.|++..++.+- ...|++ .+.|
T Consensus         6 ~i~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g   72 (253)
T PRK14261          6 ILSTKNLNLWYGE--KHALYDITISI----------PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI-LYNG   72 (253)
T ss_pred             eEEEeeeEEEECC--eeeeeeeEEEE----------CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE-EECC
Confidence            5788999999863  34899999998          89999999999999999999999987642110 125777 4777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++.+
T Consensus        73 ~~~~~   77 (253)
T PRK14261         73 ENIMD   77 (253)
T ss_pred             EEccc
Confidence            77653

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.43  E-value=2.5e-06  Score=75.53  Aligned_cols=130  Identities=10%  Similarity=0.016  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +++|+|.|++||||||+++.|++.++. .-.++.|.+  +.-++-    .......++...-. .....+ .+ ......
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~--~~~~~~----~~~~~~~~~~~~~~-~~~~~~-~~-~~~~y~   72 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF--IEALPL----KCQDAEGGIEFDGD-GGVSPG-PE-FRLLEG   72 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH--HHhcCh----hhcccccccccCcc-CCcccc-hH-HHHHHH
Confidence            679999999999999999999998761 222355554  111110    00000011110000 000001 01 112333


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCch--hhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSN--SFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV  215 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~--lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv  215 (343)
                      .....+..+.+.|...|+-....  ..++..+.                 .+   ...++.++++.++.++|.+|+.+|-
T Consensus        73 ~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~-----------------~~---~~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          73 AWYEAVAAMARAGANVIADDVFLGRAALQDCWR-----------------SF---VGLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHH-----------------Hh---cCCCEEEEEEECCHHHHHHHHHhcC
Confidence            34455677778888755543221  11111110                 00   1235778999999999999999997


Q ss_pred             HH
Q 019312          216 DD  217 (343)
Q Consensus       216 ~~  217 (343)
                      +.
T Consensus       133 ~~  134 (175)
T cd00227         133 DR  134 (175)
T ss_pred             Cc
Confidence            55

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.43  E-value=2.4e-07  Score=87.07  Aligned_cols=69  Identities=13%  Similarity=0.144  Sum_probs=55.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.. -.+|++ .+.|.
T Consensus         4 ~l~~~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~-~~~G~i-~~~g~   69 (262)
T PRK09984          4 IIRVEKLAKTFNQ--HQALHAVDLNI----------HHGEMVALLGPSGSGKSTLLRHLSGLITGDK-SAGSHI-ELLGR   69 (262)
T ss_pred             EEEEeeEEEEeCC--eEEEecceEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCCCC-CCceEE-EECCE
Confidence            4678899998863  34899999998          8999999999999999999999999886420 013777 47777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        70 ~~~   72 (262)
T PRK09984         70 TVQ   72 (262)
T ss_pred             ecc
Confidence            664

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=2.5e-07  Score=86.52  Aligned_cols=70  Identities=17%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+++.. ....|++. +.|
T Consensus         7 ~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g   73 (254)
T PRK14273          7 IIETENLNLFYTD--FKALNNINIKI----------LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI-YEG   73 (254)
T ss_pred             eEEEeeeEEEeCC--ceeecceeeEE----------cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE-ECC
Confidence            4789999999864  34899999998          8999999999999999999999999886310 01257774 677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        74 ~~i~   77 (254)
T PRK14273         74 KNIY   77 (254)
T ss_pred             Eecc
Confidence            7664

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.43  E-value=2.4e-07  Score=83.82  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGL  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..  .|.    .|++. +.|.
T Consensus         2 ~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~----~G~i~-~~g~   64 (200)
T cd03217           2 EIKDLHVSVGG--KEILKGVNLTI----------KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT----EGEIL-FKGE   64 (200)
T ss_pred             eEEEEEEEeCC--EEeeeccceEE----------CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC----ccEEE-ECCE
Confidence            56788888863  34899999998          899999999999999999999999984  333    68884 7787


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        65 ~~~~~   69 (200)
T cd03217          65 DITDL   69 (200)
T ss_pred             ECCcC
Confidence            77643

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=2.6e-07  Score=86.08  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..++. .....|++. +.|
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g   69 (249)
T PRK14253          3 KFNIENLDLFYGE--NQALKSINLPI----------PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT-MDG   69 (249)
T ss_pred             eEEEeccEEEECC--eeeeecceEEe----------cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE-ECC
Confidence            3678899998873  34899999998          899999999999999999999999987631 001257773 667


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        70 ~~~~   73 (249)
T PRK14253         70 EDIY   73 (249)
T ss_pred             EEcc
Confidence            6664

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.43  E-value=4.6e-07  Score=91.98  Aligned_cols=70  Identities=23%  Similarity=0.301  Sum_probs=62.8

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ++.++.+++++.-|..+...++++++++          .+|..++|+||||||||||++.|.+..+|.    .|++. .+
T Consensus       332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l----------~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~----~G~VR-LD  396 (580)
T COG4618         332 QGALSVERLTAAPPGQKKPILKGISFAL----------QAGEALGIIGPSGSGKSTLARLLVGIWPPT----SGSVR-LD  396 (580)
T ss_pred             CceeeEeeeeecCCCCCCcceecceeEe----------cCCceEEEECCCCccHHHHHHHHHcccccC----CCcEE-ec
Confidence            4888999999988888878999999998          899999999999999999999999999876    78884 77


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++-
T Consensus       397 ga~l~  401 (580)
T COG4618         397 GADLR  401 (580)
T ss_pred             chhhh
Confidence            87774

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.43  E-value=2.9e-07  Score=84.35  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             eeecccCCcCCcc-----cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           22 YSSFYSPFLHPKR-----RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        22 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +++.++++.|+..     ....++++++++          .+|++++|+||||||||||++.|++.+++.    .|++.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~i~   66 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTV----------NAGECVALSGPSGAGKSTLLKSLYANYLPD----SGRIL   66 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE
Confidence            4677888888632     134899999998          899999999999999999999999998754    67774

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.42  E-value=2.9e-07  Score=83.53  Aligned_cols=62  Identities=23%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|+.. .   .++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++
T Consensus         2 ~~~~l~~~~~~~-~---~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~----~G~i-~~~g~~~   62 (211)
T cd03298           2 RLDKIRFSYGEQ-P---MHFDLTF----------AQGEITAIVGPSGSGKSTLLNLIAGFETPQ----SGRV-LINGVDV   62 (211)
T ss_pred             EEEeEEEEeCCE-e---cceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEEc
Confidence            567778877632 2   3888887          889999999999999999999999998754    6777 4667666


Q ss_pred             c
Q 019312          103 T  103 (343)
Q Consensus       103 ~  103 (343)
                      .
T Consensus        63 ~   63 (211)
T cd03298          63 T   63 (211)
T ss_pred             C
Confidence            4

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.42  E-value=2.5e-07  Score=91.69  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC--CceEEE
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS--DKMQVY   97 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~--Ds~qvy   97 (343)
                      .++++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .  |++ .+
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~~~G~i-~~   66 (362)
T TIGR03258         4 GGIRIDHLRVAYGA--NTVLDDLSLEI----------EAGELLALIGKSGCGKTTLLRAIAGFVKAA----GLTGRI-AI   66 (362)
T ss_pred             eEEEEEEEEEEECC--eEEEeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCCEEE-EE
Confidence            35788899999874  24899999998          889999999999999999999999988754    6  888 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus        67 ~g~~~~~   73 (362)
T TIGR03258        67 ADRDLTH   73 (362)
T ss_pred             CCEECCC
Confidence            8888753

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.42  E-value=2.6e-07  Score=86.80  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++.
T Consensus         4 ~l~~~~l~~~~~~--~~vl~~vs~~i----------~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~----~G~i~   62 (251)
T PRK09544          4 LVSLENVSVSFGQ--RRVLSDVSLEL----------KPGKILTLLGPNGAGKSTLVRVVLGLVAPD----EGVIK   62 (251)
T ss_pred             EEEEeceEEEECC--ceEEEeEEEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence            3678899998874  23899999998          899999999999999999999999998754    56663

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.42  E-value=2.6e-07  Score=87.88  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC----ceecCCceEEE
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS----EIINSDKMQVY   97 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~----eIIs~Ds~qvy   97 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+++.    ..+..|++. +
T Consensus         2 l~~~nl~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~-~   68 (272)
T PRK13547          2 LTADHLHVARRH--RAILRDLSLRI----------EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT-L   68 (272)
T ss_pred             eEEEEEEEEECC--EeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE-E
Confidence            456778877753  24899999998          899999999999999999999999988642    122257784 7


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus        69 ~g~~~~   74 (272)
T PRK13547         69 NGEPLA   74 (272)
T ss_pred             CCEEcc
Confidence            777664

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.41  E-value=2.4e-07  Score=89.15  Aligned_cols=69  Identities=19%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             eeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      |+|.+|+..|+..   ...+++++++++          ++|.+++|+|.||+|||||.+++...-.|.    +|++ ++.
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I----------~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt----sG~v-~v~   66 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEI----------PKGEIFGIIGYSGAGKSTLLRLINLLERPT----SGSV-FVD   66 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEE----------cCCcEEEEEcCCCCcHHHHHHHHhccCCCC----CceE-EEc
Confidence            5788888888763   345899999998          999999999999999999999999987765    7999 688


Q ss_pred             cccccCC
Q 019312           99 GLDITTN  105 (343)
Q Consensus        99 gl~I~T~  105 (343)
                      |.+++.-
T Consensus        67 G~di~~l   73 (339)
T COG1135          67 GQDLTAL   73 (339)
T ss_pred             CEecccC
Confidence            9888653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.41  E-value=4.2e-07  Score=87.79  Aligned_cols=71  Identities=20%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC-CCceecCCceEEEeccccc
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF-PSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~-~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+|+|.-..+.-.+++++++++          .+|++++|+|-||||||++++.+.+.++ +.-.|..|++ .|+|.++.
T Consensus         7 L~v~f~~~~g~v~av~~vs~~i----------~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i-~f~g~~l~   75 (316)
T COG0444           7 LSVSFPTDAGVVKAVDGVSFEL----------KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI-LFDGKDLL   75 (316)
T ss_pred             eEEEEecCCccEEEEeceeEEE----------cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE-EECCcccc
Confidence            3445544444445889999998          9999999999999999999999999997 3345556788 59999987


Q ss_pred             CCC
Q 019312          104 TNK  106 (343)
Q Consensus       104 T~k  106 (343)
                      ...
T Consensus        76 ~l~   78 (316)
T COG0444          76 SLS   78 (316)
T ss_pred             cCC
Confidence            554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=3.5e-07  Score=84.38  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+..    ..++++++          .+|++++|+||||||||||++.|++..++.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~~~~~----~~~is~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~----~G~i-~~~g~~   62 (232)
T PRK10771          2 LKLTDITWLYHHL----PMRFDLTV----------ERGERVAILGPSGAGKSTLLNLIAGFLTPA----SGSL-TLNGQD   62 (232)
T ss_pred             eEEEEEEEEECCc----cceeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCee
Confidence            4678888888632    23788887          889999999999999999999999998754    6888 477776


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        63 ~~   64 (232)
T PRK10771         63 HT   64 (232)
T ss_pred             cC
Confidence            64

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.41  E-value=9.5e-08  Score=89.08  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP  116 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~  116 (343)
                      .+++++++++          .++++++|+||||+||||+...+.+.+.|.    .|.+ .|+|.+|+..+|..--+.|+-
T Consensus        18 ~Al~~Vsl~v----------~~Gei~~LIGPNGAGKTTlfNlitG~~~P~----~G~v-~~~G~~it~l~p~~iar~Gi~   82 (250)
T COG0411          18 TAVNDVSLEV----------RPGEIVGLIGPNGAGKTTLFNLITGFYKPS----SGTV-IFRGRDITGLPPHRIARLGIA   82 (250)
T ss_pred             EEEeceeEEE----------cCCeEEEEECCCCCCceeeeeeecccccCC----CceE-EECCcccCCCCHHHHHhccce
Confidence            4688999998          899999999999999999999999999975    7888 699999987776554455664


Q ss_pred             ccccccccCCCcccChhhhh
Q 019312          117 HHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus       117 h~li~~~~~~~~~~s~~~f~  136 (343)
                      .-| ++..+.. ..|+-+-.
T Consensus        83 RTF-Q~~rlF~-~lTVlENv  100 (250)
T COG0411          83 RTF-QITRLFP-GLTVLENV  100 (250)
T ss_pred             eec-ccccccC-CCcHHHHH
Confidence            322 2223333 45555443

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=3.3e-07  Score=85.55  Aligned_cols=69  Identities=17%  Similarity=0.128  Sum_probs=53.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.+++.. -...|.+ .+.|
T Consensus         4 ~l~~~~l~~~~~~--~~il~~~s~~i----------~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v-~~~g   70 (251)
T PRK14249          4 KIKIRGVNFFYHK--HQVLKNINMDF----------PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV-LLDN   70 (251)
T ss_pred             eEEEEEEEEEECC--eeEecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE-EECC
Confidence            5788899998863  34899999998          8899999999999999999999999887420 0013666 3566


Q ss_pred             ccc
Q 019312          100 LDI  102 (343)
Q Consensus       100 l~I  102 (343)
                      .++
T Consensus        71 ~~~   73 (251)
T PRK14249         71 ENI   73 (251)
T ss_pred             EEc
Confidence            655

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=3.1e-07  Score=85.78  Aligned_cols=70  Identities=14%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~g   99 (343)
                      +.++.++++.|+.  ...++++++++          .+|++++|+||||||||||++.|++...+.+. ...|++ .+.|
T Consensus         5 ~~~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g   71 (251)
T PRK14244          5 HASVKNLNLWYGS--KQILFDINLDI----------YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDG   71 (251)
T ss_pred             EEEeeeEEEEECC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE-EECC
Confidence            4568888888863  34899999998          89999999999999999999999998641010 126777 4677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        72 ~~i~   75 (251)
T PRK14244         72 IDVY   75 (251)
T ss_pred             EehH
Confidence            6664

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.40  E-value=3.2e-07  Score=93.82  Aligned_cols=65  Identities=22%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|+..  .+|+++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.+
T Consensus         4 l~~~~l~~~~~~~--~il~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~----~G~i~-~~~~~   66 (490)
T PRK10938          4 LQISQGTFRLSDT--KTLQLPSLTL----------NAGDSWAFVGANGSGKSALARALAGELPLL----SGERQ-SQFSH   66 (490)
T ss_pred             EEEEeEEEEcCCe--eecccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCC----CceEE-ECCcc
Confidence            6788999999642  3899999998          899999999999999999999999998754    57773 55655


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        67 ~~   68 (490)
T PRK10938         67 IT   68 (490)
T ss_pred             cc
Confidence            53

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=5.6e-07  Score=83.87  Aligned_cols=69  Identities=12%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl  100 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.. ....|++ .+.|.
T Consensus         5 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i-~~~g~   71 (252)
T PRK14272          5 LSAQDVNIYYGD--KQAVKNVNLDV----------QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI-LLDGQ   71 (252)
T ss_pred             EEEeeeEEEECC--EEeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE-EECCE
Confidence            567888888863  34899999998          8999999999999999999999999876321 0124777 46777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        72 ~~~   74 (252)
T PRK14272         72 DIY   74 (252)
T ss_pred             Ecc
Confidence            764

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=4.1e-07  Score=86.46  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~q   95 (343)
                      |.+..+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..++.. -...|++ 
T Consensus        16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i----------~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-   82 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGG--FLALVDVHLKI----------PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL-   82 (274)
T ss_pred             CCCceEEEeeEEEEeCC--eEEEeeeeeEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE-
Confidence            55667899999999874  24899999998          8899999999999999999999999864210 0125777 


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                      .+.|.++.
T Consensus        83 ~~~g~~l~   90 (274)
T PRK14265         83 LYRDRNIY   90 (274)
T ss_pred             EECCEecc
Confidence            47777664

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=3.8e-07  Score=85.09  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCce-ecCCceEEEecc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI-INSDKMQVYKGL  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eI-Is~Ds~qvy~gl  100 (343)
                      +++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+..+. ...|++. +.|.
T Consensus         6 l~~~~l~~~~~~--~~~l~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~-~~g~   72 (252)
T PRK14255          6 ITSSDVHLFYGK--FEALKGIDLDF----------NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS-LRGQ   72 (252)
T ss_pred             EEEEeEEEEECC--eeEEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE-EcCE
Confidence            678899999874  34899999998          88999999999999999999999997541110 1257773 7777


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        73 ~~~   75 (252)
T PRK14255         73 NIY   75 (252)
T ss_pred             Ecc
Confidence            764

>PRK06762 hypothetical protein; Provisional

Probab=98.38  E-value=1e-06  Score=76.91  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~   94 (343)
                      +.+|+|+|++||||||+++.|++.++. ..+++.|.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~   38 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV   38 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence            368999999999999999999999842 445666655

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.37  E-value=3.7e-07  Score=93.87  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         5 ~l~~~~l~~~~~~--~~il~~vs~~i----------~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~G~i-~~~g~   67 (510)
T PRK09700          5 YISMAGIGKSFGP--VHALKSVNLTV----------YPGEIHALLGENGAGKSTLMKVLSGIHEPT----KGTI-TINNI   67 (510)
T ss_pred             eEEEeeeEEEcCC--eEEeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCcCCC----ccEE-EECCE
Confidence            3778899998863  24899999998          899999999999999999999999998754    6888 47888


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        68 ~i~~   71 (510)
T PRK09700         68 NYNK   71 (510)
T ss_pred             ECCC
Confidence            7754

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.37  E-value=3.5e-06  Score=72.16  Aligned_cols=33  Identities=36%  Similarity=0.684  Sum_probs=29.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++|+|++||||||+++.|++.++ ..+++.|.+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~-~~~i~~D~~   33 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLG-APFIDGDDL   33 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcC-CEEEeCccc
Confidence            478999999999999999999988 778888877

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.37  E-value=4.5e-07  Score=85.88  Aligned_cols=55  Identities=24%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNK  106 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~k  106 (343)
                      .++++|++++          .+|++++|+|.|||||||+++.|.+...|.    .|++ .|+|.++...+
T Consensus        27 ~avd~Vsf~i----------~~ge~~glVGESG~GKSTlgr~i~~L~~pt----~G~i-~f~g~~i~~~~   81 (268)
T COG4608          27 KAVDGVSFSI----------KEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEI-LFEGKDITKLS   81 (268)
T ss_pred             EEecceeEEE----------cCCCEEEEEecCCCCHHHHHHHHHcCcCCC----CceE-EEcCcchhhcc
Confidence            4788999998          999999999999999999999999999876    7899 69999976433

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=6.2e-07  Score=92.33  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=58.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +.+.+++|.||.+. .++.++++++          ++++.++|+|+||||||||...|++.+++.    .|++ ..+|.+
T Consensus       321 i~~~~l~~~y~~g~-~~l~~l~~t~----------~~g~~talvG~SGaGKSTLl~lL~G~~~~~----~G~I-~vng~~  384 (559)
T COG4988         321 ISLENLSFRYPDGK-PALSDLNLTI----------KAGQLTALVGASGAGKSTLLNLLLGFLAPT----QGEI-RVNGID  384 (559)
T ss_pred             eeecceEEecCCCC-cccCCceeEe----------cCCcEEEEECCCCCCHHHHHHHHhCcCCCC----CceE-EECCcc
Confidence            34559999999987 5889999998          899999999999999999999999999865    6777 467776


Q ss_pred             ccCCC
Q 019312          102 ITTNK  106 (343)
Q Consensus       102 I~T~k  106 (343)
                      ....+
T Consensus       385 l~~l~  389 (559)
T COG4988         385 LRDLS  389 (559)
T ss_pred             ccccC
Confidence            65433

>PRK06547 hypothetical protein; Provisional

Probab=98.36  E-value=7.7e-07  Score=79.34  Aligned_cols=40  Identities=33%  Similarity=0.448  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ....+|+|.|++||||||++..|++.++ ..+|+.|++  |.+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-~~~~~~d~~--~~~   52 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTG-FQLVHLDDL--YPG   52 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCeecccce--ecc
Confidence            3457899999999999999999999988 889999998  654

>TIGR00017 cmk cytidylate kinase

Probab=98.36  E-value=1.6e-06  Score=80.13  Aligned_cols=38  Identities=26%  Similarity=0.515  Sum_probs=34.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+|+|.||+||||||+++.|++.++ ..+++.|.+  |+.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~-~~~~~~g~~--~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG-YAYLDSGAM--YRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-CceeeCchH--HHHH
Confidence            4799999999999999999999998 888999988  6554

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=4.9e-07  Score=86.08  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~g   99 (343)
                      -+.+.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|. .-.+.|++ .+.|
T Consensus        21 ~l~i~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g   87 (276)
T PRK14271         21 AMAAVNLTLGFAG--KTVLDQVSMGF----------PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV-LLGG   87 (276)
T ss_pred             EEEEeeEEEEECC--EEEeeeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE-EECC
Confidence            4688999999974  34899999998          899999999999999999999999987631 00136777 4777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++.+
T Consensus        88 ~~i~~   92 (276)
T PRK14271         88 RSIFN   92 (276)
T ss_pred             EEccc
Confidence            77653

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=5e-07  Score=84.33  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc---CCCceecCCceEEE
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF---FPSEIINSDKMQVY   97 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~---~~~eIIs~Ds~qvy   97 (343)
                      .+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..   ++.  .+.|++ .+
T Consensus         3 ~l~~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~--~~~G~i-~~   67 (250)
T PRK14245          3 KIDARDVNFWYGD--FHALKGISMEI----------EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT--RLEGEI-RI   67 (250)
T ss_pred             EEEEEEEEEEECC--EeEEeeeeEEE----------eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC--CCceEE-EE
Confidence            4677888888864  34899999998          899999999999999999999999863   211  125777 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus        68 ~g~~~~~   74 (250)
T PRK14245         68 DGRNIYD   74 (250)
T ss_pred             CCEeccc
Confidence            7877753

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.35  E-value=6.2e-07  Score=86.93  Aligned_cols=138  Identities=17%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChh
Q 019312           54 AHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPD  133 (343)
Q Consensus        54 ~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~  133 (343)
                      +.+.++..|+|+|+.||||||+++.|++.++ ..+|+.|.. +.+             ..|+.     ...... .+...
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg-~~~id~D~~-i~~-------------~~G~~-----i~ei~~-~~G~~  186 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARLG-VPFVELNRE-IER-------------EAGLS-----VSEIFA-LYGQE  186 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEeHHHH-HHH-------------HhCCC-----HHHHHH-HHCHH
Confidence            3557889999999999999999999999998 777766644 111             11111     001111 24456


Q ss_pred             hhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          134 DFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      .|.+...+.+.++.......||..|.|.+.        +|..  +..          ...+++++||.++.+.+.+|+.+
T Consensus       187 ~fr~~e~~~l~~ll~~~~~~VI~~Ggg~v~--------~~~~--~~~----------l~~~~~~V~L~a~~e~~~~Rl~~  246 (309)
T PRK08154        187 GYRRLERRALERLIAEHEEMVLATGGGIVS--------EPAT--FDL----------LLSHCYTVWLKASPEEHMARVRA  246 (309)
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEECCCchhC--------CHHH--HHH----------HHhCCEEEEEECCHHHHHHHHhc
Confidence            777777777777665443334443333321        1111  000          00134689999999999999987


Q ss_pred             HHHH--HH-hccHHHHHHHHHh
Q 019312          214 RVDD--ML-ESGMFEELAEFFD  232 (343)
Q Consensus       214 Rv~~--Ml-~~GlleEv~~l~~  232 (343)
                      |-+.  +. +....++++.++.
T Consensus       247 r~~~rp~~~~~~~~e~i~~~~~  268 (309)
T PRK08154        247 QGDLRPMADNREAMEDLRRILA  268 (309)
T ss_pred             CCCCCCCCCCCChHHHHHHHHH
Confidence            6421  11 2234566666654

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.35  E-value=7.9e-07  Score=77.97  Aligned_cols=110  Identities=16%  Similarity=0.276  Sum_probs=68.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe--cccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK--GLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~--gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +.++|+|++||||||+++.||+.++ ..+++.|.+. ..  |+++.                    +..+ .++...|.+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg-~~~~d~D~~~-~~~~g~~~~--------------------~~~~-~~g~~~~~~   59 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG-YRFVDTDQWL-QSTSNMTVA--------------------EIVE-REGWAGFRA   59 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC-CCEEEccHHH-HHHhCCCHH--------------------HHHH-HHCHHHHHH
Confidence            4688899999999999999999998 8888888762 11  11110                    0011 234456776


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      ...+.+..+ ..+...|.+||+..+         ++...         .   .+.....++||+.+.+.+.+||..|
T Consensus        60 ~e~~~~~~~-~~~~~vi~~ggg~vl---------~~~~~---------~---~l~~~~~~v~l~~~~~~~~~Rl~~r  114 (171)
T PRK03731         60 RESAALEAV-TAPSTVIATGGGIIL---------TEENR---------H---FMRNNGIVIYLCAPVSVLANRLEAN  114 (171)
T ss_pred             HHHHHHHHh-cCCCeEEECCCCccC---------CHHHH---------H---HHHhCCEEEEEECCHHHHHHHHccc
Confidence            666777554 445554455554221         11000         0   0011235789999999999999876

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.34  E-value=4.7e-07  Score=93.01  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         5 i~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~----~G~i-~~~g~~   67 (501)
T PRK10762          5 LQLKGIDKAFPG--VKALSGAALNV----------YPGRVMALVGENGAGKSTMMKVLTGIYTRD----AGSI-LYLGKE   67 (501)
T ss_pred             EEEeeeEEEeCC--eEEeeeeeEEE----------cCCeEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCEE
Confidence            678889988863  34899999998          889999999999999999999999998754    6888 477777


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        68 ~~   69 (501)
T PRK10762         68 VT   69 (501)
T ss_pred             CC
Confidence            64

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=5.4e-07  Score=85.03  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~g   99 (343)
                      .+.+.++++.|...  .+++++++++          .+|++++|+||||||||||++.|++..++.. ....|++ .+.|
T Consensus        10 ~l~i~~v~~~~~~~--~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i-~~~g   76 (264)
T PRK14243         10 VLRTENLNVYYGSF--LAVKNVWLDI----------PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV-TFHG   76 (264)
T ss_pred             EEEEeeeEEEECCE--EEeecceEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE-EECC
Confidence            47889999988642  4899999998          8999999999999999999999998764210 0125777 3667


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        77 ~~i~   80 (264)
T PRK14243         77 KNLY   80 (264)
T ss_pred             EEcc
Confidence            6664

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=8.6e-07  Score=91.18  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=56.4

Q ss_pred             cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEE
Q 019312           20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVY   97 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy   97 (343)
                      .-+++.++++.|+.+ ...+++++++++          .+|++++|+||||||||||++.|++.++| .    .|++ .+
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~----~G~i-~~  322 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSL----------RRGEILGIAGLVGAGRTELVQCLFGAYPGRW----EGEI-FI  322 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEE----------cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC----CcEE-EE
Confidence            358899999988531 234899999998          89999999999999999999999998762 3    6777 47


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus       323 ~g~~~~  328 (506)
T PRK13549        323 DGKPVK  328 (506)
T ss_pred             CCEECC
Confidence            777764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.34  E-value=4.9e-07  Score=93.17  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=56.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus        11 ~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~   73 (510)
T PRK15439         11 LLCARSISKQYSG--VEVLKGIDFTL----------HAGEVHALLGGNGAGKSTLMKIIAGIVPPD----SGTL-EIGGN   73 (510)
T ss_pred             eEEEEeEEEEeCC--ceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence            4788899998863  34899999998          889999999999999999999999998754    6788 47787


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        74 ~~~~   77 (510)
T PRK15439         74 PCAR   77 (510)
T ss_pred             ECCC
Confidence            7753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=5.5e-07  Score=83.93  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=54.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC--CCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~qvy~   98 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...  |. ....|++ .+.
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i-~~~   70 (252)
T PRK14239          5 ILQVSDLSVYYNK--KKALNSVSLDF----------YPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSI-VYN   70 (252)
T ss_pred             eEEEEeeEEEECC--eeeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceE-EEC
Confidence            4678899999874  24899999998          8899999999999999999999998742  21 1125777 477


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        71 g~~~~   75 (252)
T PRK14239         71 GHNIY   75 (252)
T ss_pred             CEECc
Confidence            77664

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.34  E-value=8e-07  Score=101.87  Aligned_cols=70  Identities=13%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..+++.+|+|.|+.++ ..+|+++++++          ++|++++|+||||||||||++.|++.++|.    .|++.+-.
T Consensus       381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i----------~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~----~G~I~i~~  446 (1466)
T PTZ00265        381 KKIQFKNVRFHYDTRKDVEIYKDLNFTL----------TEGKTYAFVGESGCGKSTILKLIERLYDPT----EGDIIIND  446 (1466)
T ss_pred             CcEEEEEEEEEcCCCCCCceeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHHHhccCC----CCeEEEeC
Confidence            4799999999998643 24899999998          899999999999999999999999999865    68884324


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus       447 g~~i~  451 (1466)
T PTZ00265        447 SHNLK  451 (1466)
T ss_pred             Ccchh
Confidence            56664

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=7.5e-07  Score=86.04  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~   98 (343)
                      ..+.+.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++...+.. -...|++. +.
T Consensus        44 ~~l~i~nl~~~~~~--~~iL~~is~~i----------~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~-i~  110 (305)
T PRK14264         44 AKLSVEDLDVYYGD--DHALKGVSMDI----------PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE-LD  110 (305)
T ss_pred             ceEEEEEEEEEeCC--eeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE-EC
Confidence            45788999998874  34899999998          8999999999999999999999999874100 01267774 67


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus       111 g~~i~  115 (305)
T PRK14264        111 GQDIY  115 (305)
T ss_pred             CEEcc
Confidence            77664

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.33  E-value=2.8e-07  Score=77.53  Aligned_cols=51  Identities=31%  Similarity=0.494  Sum_probs=42.5

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      |+++++++          .+|++++|+|+||||||||++.|++...+.    .|.+ .+.|.++..
T Consensus         1 L~~v~~~i----------~~g~~~~i~G~nGsGKStLl~~l~g~~~~~----~G~i-~~~~~~~~~   51 (137)
T PF00005_consen    1 LKNVSLEI----------KPGEIVAIVGPNGSGKSTLLKALAGLLPPD----SGSI-LINGKDISD   51 (137)
T ss_dssp             EEEEEEEE----------ETTSEEEEEESTTSSHHHHHHHHTTSSHES----EEEE-EETTEEGTT
T ss_pred             CCceEEEE----------cCCCEEEEEccCCCccccceeeeccccccc----cccc-ccccccccc
Confidence            56788887          889999999999999999999999988742    5777 367777754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.32  E-value=5.6e-07  Score=92.44  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus         4 ~l~~~~l~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~   66 (501)
T PRK11288          4 YLSFDGIGKTFPG--VKALDDISFDC----------RAGQVHALMGENGAGKSTLLKILSGNYQPD----AGSI-LIDGQ   66 (501)
T ss_pred             eEEEeeeEEEECC--EEEEeeeeEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CCEE-EECCE
Confidence            4778899998864  24899999998          899999999999999999999999998754    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~i~   69 (501)
T PRK11288         67 EMR   69 (501)
T ss_pred             ECC
Confidence            774

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=7.7e-07  Score=83.82  Aligned_cols=72  Identities=21%  Similarity=0.243  Sum_probs=54.3

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC--ceecCCceE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS--EIINSDKMQ   95 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~--eIIs~Ds~q   95 (343)
                      .+..+.+.++++.|..  +..++++++++          .+|++++|+||||||||||++.|++...|.  +|.-.|.+ 
T Consensus         7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~-   73 (257)
T PRK14246          7 AEDVFNISRLYLYIND--KAILKDITIKI----------PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV-   73 (257)
T ss_pred             hhhheeeeeEEEecCC--ceeEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE-
Confidence            3455778888888863  34899999998          889999999999999999999999987642  23223444 


Q ss_pred             EEecccc
Q 019312           96 VYKGLDI  102 (343)
Q Consensus        96 vy~gl~I  102 (343)
                      .+.|.++
T Consensus        74 ~~~g~~~   80 (257)
T PRK14246         74 LYFGKDI   80 (257)
T ss_pred             EECCccc
Confidence            2445444

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=3.8e-06  Score=73.71  Aligned_cols=143  Identities=14%  Similarity=0.243  Sum_probs=90.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccc-ccccCccccccccCCCcccChhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHK-RHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e-~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +-+++|+|++||||||+++.|+..+. .++|..|.++-         ..+.+. .+|+|-.     |-     +--.|..
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~-~~F~dgDd~Hp---------~~NveKM~~GipLn-----D~-----DR~pWL~   71 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELG-LKFIDGDDLHP---------PANVEKMTQGIPLN-----DD-----DRWPWLK   71 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhC-CcccccccCCC---------HHHHHHHhcCCCCC-----cc-----cccHHHH
Confidence            45999999999999999999999999 88888888741         001111 2344321     11     2234554


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchh--hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNS--FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV  215 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~l--Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv  215 (343)
                      .....+..-.+.|.. +|+.+|.|  -++.++.+. ++.      +   ++.. .+...+.|++|..+.|++-+|+.+|-
T Consensus        72 ~i~~~~~~~l~~~q~-vVlACSaLKk~YRdILr~s-l~~------g---k~~~-~~~~~l~fi~l~~s~evi~~Rl~~R~  139 (191)
T KOG3354|consen   72 KIAVELRKALASGQG-VVLACSALKKKYRDILRHS-LKD------G---KPGK-CPESQLHFILLSASFEVILKRLKKRK  139 (191)
T ss_pred             HHHHHHHHHhhcCCe-EEEEhHHHHHHHHHHHHhh-ccc------C---CccC-CccceEEEeeeeccHHHHHHHHhhcc
Confidence            444444443445664 55566665  223444321 110      0   1111 11234678899999999999999999


Q ss_pred             HHHHhccHHHHHHHHHhc
Q 019312          216 DDMLESGMFEELAEFFDS  233 (343)
Q Consensus       216 ~~Ml~~GlleEv~~l~~~  233 (343)
                      .+.+..-|++---+.++.
T Consensus       140 gHFMp~~lleSQf~~LE~  157 (191)
T KOG3354|consen  140 GHFMPADLLESQFATLEA  157 (191)
T ss_pred             cccCCHHHHHHHHHhccC
Confidence            999999999887676654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.32  E-value=6e-07  Score=92.83  Aligned_cols=73  Identities=11%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEE
Q 019312           21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVY   97 (343)
Q Consensus        21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy   97 (343)
                      -+++.++++.|+.+  ...+++++++++          .+|++++|+||||||||||++.|++.++|.. ...+|++. +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i----------~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~-~   73 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQI----------EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR-F   73 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEE----------eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE-E
Confidence            37888999998642  234899999998          8899999999999999999999999987411 12368884 7


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus        74 ~g~~i~~   80 (529)
T PRK15134         74 HGESLLH   80 (529)
T ss_pred             CCEeccc
Confidence            7887753

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.32  E-value=8.1e-07  Score=82.10  Aligned_cols=51  Identities=22%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      ++++++++          .+|++++|+||||||||||++.|++..+|.    .|++. +.|.++..
T Consensus         1 l~~is~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~~~~   51 (230)
T TIGR01184         1 LKGVNLTI----------QQGEFISLIGHSGCGKSTLLNLISGLAQPT----SGGVI-LEGKQITE   51 (230)
T ss_pred             CCceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE-ECCEECCC
Confidence            35678887          889999999999999999999999998754    78884 77877754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.31  E-value=8.9e-07  Score=92.17  Aligned_cols=138  Identities=14%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +.+.|+|+|+.||||||+++.||+.++ .++|+.|.. +-             +..|.     ++-+..+ .+....|++
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~-~~fiD~D~~-ie-------------~~~g~-----si~eif~-~~Ge~~FR~   63 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMR-LPFADADVE-IE-------------REIGM-----SIPSYFE-EYGEPAFRE   63 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhC-CCEEEchHH-HH-------------HHHCc-----CHHHHHH-HHHHHHHHH
Confidence            456899999999999999999999999 888888876 11             11111     1112222 456788998


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD  217 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~  217 (343)
                      ...+++.++.......|-+||....         +|+..        .-+...++....++||+.+.+.+.+|+..+-.+
T Consensus        64 ~E~~~l~~~~~~~~~VIs~GGG~v~---------~~~n~--------~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~R  126 (542)
T PRK14021         64 VEADVVADMLEDFDGIFSLGGGAPM---------TPSTQ--------HALASYIAHGGRVVYLDADPKEAMERANRGGGR  126 (542)
T ss_pred             HHHHHHHHHHhcCCeEEECCCchhC---------CHHHH--------HHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCC
Confidence            8889999887655544557775322         22110        000000112346899999999999998643111


Q ss_pred             -HHhccHHHHHHHHHhc
Q 019312          218 -MLESGMFEELAEFFDS  233 (343)
Q Consensus       218 -Ml~~GlleEv~~l~~~  233 (343)
                       ++...-.+++++|++.
T Consensus       127 Pll~~~~~~~~~~l~~~  143 (542)
T PRK14021        127 PMLNGDANKRWKKLFKQ  143 (542)
T ss_pred             CCCCCCcHHHHHHHHHH
Confidence             2322224566666654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=5.8e-07  Score=92.44  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.+++..  ..|++. +.|.
T Consensus         5 ~l~~~nl~~~~~~--~~il~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~-~~g~   69 (506)
T PRK13549          5 LLEMKNITKTFGG--VKALDNVSLKV----------RAGEIVSLCGENGAGKSTLMKVLSGVYPHGT--YEGEII-FEGE   69 (506)
T ss_pred             eEEEeeeEEEeCC--eEeecceeEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--CCeEEE-ECCE
Confidence            3788899999863  34899999998          8899999999999999999999999887410  268884 7888


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus        70 ~~~~   73 (506)
T PRK13549         70 ELQA   73 (506)
T ss_pred             ECCC
Confidence            7753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.31  E-value=7.1e-07  Score=82.81  Aligned_cols=53  Identities=21%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|.++.
T Consensus        34 ~~il~~vs~~i----------~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~----~G~i~-~~g~~~~   86 (236)
T cd03267          34 VEALKGISFTI----------EKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVR-VAGLVPW   86 (236)
T ss_pred             eeeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-ECCEEcc
Confidence            45899999998          889999999999999999999999988754    68774 6666543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.30  E-value=9.5e-07  Score=90.60  Aligned_cols=69  Identities=12%  Similarity=0.167  Sum_probs=56.3

Q ss_pred             cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEE
Q 019312           20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVY   97 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy   97 (343)
                      .-+++.++++.|+.. ...+++++++++          .+|++++|+||||||||||++.|++..+| .    .|++ .+
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~----~G~i-~~  320 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSL----------RRGEILGVAGLVGAGRTELVQALFGAYPGKF----EGNV-FI  320 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEE----------eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC----CeEE-EE
Confidence            358899999887532 234899999998          89999999999999999999999999863 3    5778 47


Q ss_pred             eccccc
Q 019312           98 KGLDIT  103 (343)
Q Consensus        98 ~gl~I~  103 (343)
                      .|.++.
T Consensus       321 ~g~~~~  326 (500)
T TIGR02633       321 NGKPVD  326 (500)
T ss_pred             CCEECC
Confidence            787774

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.30  E-value=7.3e-07  Score=92.84  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      -+++.++++.|... ..+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++.
T Consensus         6 ~l~i~~l~~~y~~~-~~il~~vs~~i----------~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~----~G~i~   65 (556)
T PRK11819          6 IYTMNRVSKVVPPK-KQILKDISLSF----------FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----EGEAR   65 (556)
T ss_pred             EEEEeeEEEEeCCC-CeeeeCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence            47888999999633 34899999998          899999999999999999999999998754    56664

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.30  E-value=1.1e-06  Score=84.11  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312           14 YHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK   93 (343)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds   93 (343)
                      .++-....+++.++++.   . ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|+
T Consensus        32 ~~~~~~~~l~i~nls~~---~-~~vL~~vs~~i----------~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~----~G~   93 (282)
T cd03291          32 KHSSDDNNLFFSNLCLV---G-APVLKNINLKI----------EKGEMLAITGSTGSGKTSLLMLILGELEPS----EGK   93 (282)
T ss_pred             ccCCCCCeEEEEEEEEe---c-ccceeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcE
Confidence            34444467899999985   2 34899999998          899999999999999999999999998754    566


Q ss_pred             eE
Q 019312           94 MQ   95 (343)
Q Consensus        94 ~q   95 (343)
                      +.
T Consensus        94 I~   95 (282)
T cd03291          94 IK   95 (282)
T ss_pred             EE
Confidence            63

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.29  E-value=8.2e-07  Score=77.00  Aligned_cols=63  Identities=25%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +.+++|.|+..  ..++++++++          .++++++|+||||||||||++.|++.+++.    .+.+. +.|.++.
T Consensus         2 ~~~~~~~~~~~--~~l~~~~~~i----------~~g~~~~i~G~nGsGKStll~~l~g~~~~~----~G~i~-~~~~~~~   64 (157)
T cd00267           2 IENLSFRYGGR--TALDNVSLTL----------KAGEIVALVGPNGSGKSTLLRAIAGLLKPT----SGEIL-IDGKDIA   64 (157)
T ss_pred             eEEEEEEeCCe--eeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ccEEE-ECCEEcc
Confidence            34566777643  4899999998          889999999999999999999999988743    67773 6676654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.29  E-value=1.1e-06  Score=77.66  Aligned_cols=33  Identities=18%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+||+||||||++..|++.++ ..+||.|.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~-~~~is~~d~   33 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDL   33 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-CeEEECChH
Confidence            578999999999999999999998 889998877

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=9.6e-07  Score=93.57  Aligned_cols=61  Identities=18%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      ...+++.++++.|..  ..+++++++++          .+|.+++|+||||||||||++.|++..+|.    .|++.
T Consensus       310 ~~~l~~~~l~~~y~~--~~il~~isl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~----~G~i~  370 (638)
T PRK10636        310 NPLLKMEKVSAGYGD--RIILDSIKLNL----------VPGSRIGLLGRNGAGKSTLIKLLAGELAPV----SGEIG  370 (638)
T ss_pred             CceEEEEeeEEEeCC--eeeeccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CCeEE
Confidence            346889999998863  34899999998          899999999999999999999999998754    56663

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=9.7e-07  Score=82.28  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCceEEEecc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKMQVYKGL  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~qvy~gl  100 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..++.+ ..+.|++. +.|.
T Consensus         4 l~~~~v~~~~~~--~~~l~~~s~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~-~~g~   70 (250)
T PRK14266          4 IEVENLNTYFDD--AHILKNVNLDI----------PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY-LDGV   70 (250)
T ss_pred             EEEEeEEEEeCC--eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE-ECCE
Confidence            567888888863  23899999998          8899999999999999999999998753111 01367773 6676


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        71 ~i~   73 (250)
T PRK14266         71 DIY   73 (250)
T ss_pred             Ecc
Confidence            654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.28  E-value=8.6e-07  Score=85.40  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=46.2

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      .+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++..
T Consensus         7 ~~l~~vs~~i----------~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~~~   59 (302)
T TIGR01188         7 KAVDGVNFKV----------REGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTA-RVAGYDVVR   59 (302)
T ss_pred             eEEeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEccc
Confidence            4799999998          899999999999999999999999998754    6888 477887753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.5e-06  Score=75.52  Aligned_cols=130  Identities=17%  Similarity=0.292  Sum_probs=89.4

Q ss_pred             EcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccc-cccCccccccccCCCcccChhhhhhhhhHHH
Q 019312           65 MGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR-HNVPHHLLGEFVPDDVEFTPDDFRLQADNAI  143 (343)
Q Consensus        65 ~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~-~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i  143 (343)
                      ||.+||||||++..||..++ .+.|..|+++--.  +|       +.+ .|+|-     .|-     +-.-|.+.....+
T Consensus         1 MGVsG~GKStvg~~lA~~lg-~~fidGDdlHp~a--Ni-------~KM~~GiPL-----~Dd-----DR~pWL~~l~~~~   60 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLG-AKFIDGDDLHPPA--NI-------EKMSAGIPL-----NDD-----DRWPWLEALGDAA   60 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcC-CceecccccCCHH--HH-------HHHhCCCCC-----Ccc-----hhhHHHHHHHHHH
Confidence            69999999999999999999 9999999885111  11       111 23331     122     2356777777777


Q ss_pred             HHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccH
Q 019312          144 SDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGM  223 (343)
Q Consensus       144 ~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~Gl  223 (343)
                      ....+.|+. +|+.+|.|     -..+.|-    ++..          .-.+.|+||+.+.+.+.+|+..|-.+.|...|
T Consensus        61 ~~~~~~~~~-~vi~CSAL-----Kr~YRD~----LR~~----------~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~l  120 (161)
T COG3265          61 ASLAQKNKH-VVIACSAL-----KRSYRDL----LREA----------NPGLRFVYLDGDFDLILERMKARKGHFMPASL  120 (161)
T ss_pred             HHhhcCCCc-eEEecHHH-----HHHHHHH----Hhcc----------CCCeEEEEecCCHHHHHHHHHhcccCCCCHHH
Confidence            777777775 56666654     2221211    2211          11367999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 019312          224 FEELAEFFDSD  234 (343)
Q Consensus       224 leEv~~l~~~~  234 (343)
                      ++---+.++..
T Consensus       121 l~SQfa~LE~P  131 (161)
T COG3265         121 LDSQFATLEEP  131 (161)
T ss_pred             HHHHHHHhcCC
Confidence            99876666553

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1.5e-06  Score=89.39  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|.    .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.
T Consensus       265 ~l~~~~l~~~~~----~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~----~G~I-~~~g~  325 (510)
T PRK09700        265 VFEVRNVTSRDR----KKVRDISFSV----------CRGEILGFAGLVGSGRTELMNCLFGVDKRA----GGEI-RLNGK  325 (510)
T ss_pred             EEEEeCccccCC----CcccceeEEE----------cCCcEEEEECCCCCCHHHHHHHHhCCCcCC----CCeE-EECCE
Confidence            488889998652    2799999998          899999999999999999999999998754    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus       326 ~~~  328 (510)
T PRK09700        326 DIS  328 (510)
T ss_pred             ECC
Confidence            764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1.3e-06  Score=89.55  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      .+..+++.++++.+    ..+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+
T Consensus       247 ~~~~i~~~~l~~~~----~~~l~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~  307 (491)
T PRK10982        247 GEVILEVRNLTSLR----QPSIRDVSFDL----------HKGEILGIAGLVGAKRTDIVETLFGIREKS----AGTI-TL  307 (491)
T ss_pred             CCcEEEEeCccccc----CcccceeeEEE----------eCCcEEEEecCCCCCHHHHHHHHcCCCcCC----ccEE-EE
Confidence            34468889999874    23899999998          899999999999999999999999998754    6777 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus       308 ~g~~i~~  314 (491)
T PRK10982        308 HGKKINN  314 (491)
T ss_pred             CCEECCC
Confidence            7777753

>PRK08233 hypothetical protein; Provisional

Probab=98.28  E-value=6.7e-06  Score=72.22  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|.|++|||||||+..|++.++...++..|..
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~   38 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY   38 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence            579999999999999999999999863334434433

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.28  E-value=9e-07  Score=93.50  Aligned_cols=70  Identities=17%  Similarity=0.165  Sum_probs=57.9

Q ss_pred             ceeecccCCcCCcc---------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           21 HYSSFYSPFLHPKR---------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        21 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      -+++.++++.|+..         ...+++++++++          .+|++++|+||||||||||++.|++.++|.    .
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i----------~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~----~  378 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL----------WPGETLSLVGESGSGKSTTGRALLRLVESQ----G  378 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----C
Confidence            47888999888631         124789999998          899999999999999999999999998754    7


Q ss_pred             CceEEEecccccCC
Q 019312           92 DKMQVYKGLDITTN  105 (343)
Q Consensus        92 Ds~qvy~gl~I~T~  105 (343)
                      |++ .|.|.++...
T Consensus       379 G~I-~~~g~~i~~~  391 (623)
T PRK10261        379 GEI-IFNGQRIDTL  391 (623)
T ss_pred             cEE-EECCEECCcC
Confidence            888 4888887643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.27  E-value=8e-07  Score=91.16  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=54.4

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..+|.  ...|++ .+.|.+
T Consensus         2 l~i~~l~~~~~~--~~il~~isl~i----------~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~--~~~G~i-~~~g~~   66 (500)
T TIGR02633         2 LEMKGIVKTFGG--VKALDGIDLEV----------RPGECVGLCGENGAGKSTLMKILSGVYPHG--TWDGEI-YWSGSP   66 (500)
T ss_pred             EEEEeEEEEeCC--eEeecceEEEE----------eCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEE-EECCEE
Confidence            467788888853  34899999998          899999999999999999999999987641  026777 477877


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        67 ~~~   69 (500)
T TIGR02633        67 LKA   69 (500)
T ss_pred             CCC
Confidence            753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.27  E-value=1.5e-06  Score=90.03  Aligned_cols=73  Identities=19%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             CCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           16 HQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      ..+...+++.++++.|... ...+.++++.+          .++..|+|+||||+|||||++.|++...+.    +|++.
T Consensus       316 ~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i----------~~g~riaiiG~NG~GKSTLlk~l~g~~~~~----~G~v~  380 (530)
T COG0488         316 RLGKLVLEFENVSKGYDGG-RLLLKDLSFRI----------DRGDRIAIVGPNGAGKSTLLKLLAGELGPL----SGTVK  380 (530)
T ss_pred             cCCCeeEEEeccccccCCC-ceeecCceEEe----------cCCCEEEEECCCCCCHHHHHHHHhhhcccC----CceEE
Confidence            4455778999999999876 44889999998          899999999999999999999999988754    67775


Q ss_pred             EEeccccc
Q 019312           96 VYKGLDIT  103 (343)
Q Consensus        96 vy~gl~I~  103 (343)
                      +-.++.|+
T Consensus       381 ~g~~v~ig  388 (530)
T COG0488         381 VGETVKIG  388 (530)
T ss_pred             eCCceEEE
Confidence            44444443

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.27  E-value=1.4e-06  Score=81.85  Aligned_cols=60  Identities=15%  Similarity=0.290  Sum_probs=45.8

Q ss_pred             CcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           29 FLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      |.||.... .+.++++.+-+     ..+.+|++++|+||||||||||++.|++..+|.    .|++. +.|
T Consensus         1 ~~y~~~~~-~~~~~~l~~~~-----~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~----~G~i~-~~g   60 (246)
T cd03237           1 YTYPTMKK-TLGEFTLEVEG-----GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD----EGDIE-IEL   60 (246)
T ss_pred             CCCccccc-ccCcEEEEEec-----CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CCeEE-ECC
Confidence            56665544 77888888722     235689999999999999999999999998754    57663 444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.27  E-value=1e-06  Score=81.32  Aligned_cols=54  Identities=17%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ++++++++          .+|++++|+||||||||||++.|++..+|....+.|++ .+.|.++.
T Consensus         2 l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i-~~~g~~~~   55 (230)
T TIGR02770         2 VQDLNLSL----------KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI-LLDGRPLL   55 (230)
T ss_pred             ccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE-EECCEech
Confidence            57888887          89999999999999999999999999875111136888 47787764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.26  E-value=1.8e-06  Score=75.67  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+.+-+.+  ..|.++++++          .+|+++.||||||||||||.--+++.+. ..+-..+++ ...+.+
T Consensus         3 l~l~nvsl~l~g~--cLLa~~n~Ti----------a~GeivtlMGPSGcGKSTLls~~~G~La-~~F~~~G~~-~l~~~~   68 (213)
T COG4136           3 LCLKNVSLRLPGS--CLLANVNFTI----------AKGEIVTLMGPSGCGKSTLLSWMIGALA-GQFSCTGEL-WLNEQR   68 (213)
T ss_pred             eeeeeeeecCCCc--eEEEeeeEEe----------cCCcEEEEECCCCccHHHHHHHHHhhcc-cCcceeeEE-EECCee
Confidence            4677888776643  4678899997          8999999999999999999999999887 445456777 466666


Q ss_pred             ccCCCCCccccccc
Q 019312          102 ITTNKIPSHKRHNV  115 (343)
Q Consensus       102 I~T~kp~~~e~~~i  115 (343)
                      +.+ -|......||
T Consensus        69 l~~-lPa~qRq~Gi   81 (213)
T COG4136          69 LDM-LPAAQRQIGI   81 (213)
T ss_pred             ccc-cchhhhheee
Confidence            653 3433333444

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.26  E-value=1.1e-06  Score=87.10  Aligned_cols=54  Identities=26%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN  105 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~  105 (343)
                      .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++...
T Consensus         7 ~~l~~vs~~i----------~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~----~G~I-~i~G~~i~~~   60 (363)
T TIGR01186         7 KGVNDADLAI----------AKGEIFVIMGLSGSGKSTTVRMLNRLIEPT----AGQI-FIDGENIMKQ   60 (363)
T ss_pred             eeEEeeEEEE----------cCCCEEEEECCCCChHHHHHHHHhCCCCCC----ceEE-EECCEECCcC
Confidence            3789999998          899999999999999999999999999865    7888 5889888643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.26  E-value=1.4e-06  Score=92.11  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             ceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -+++.++++.|....  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v----------~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~----~G~i~-~~   76 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSL----------QRGETLAIVGESGSGKSVTALALMRLLEQA----GGLVQ-CD   76 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCC----CeEEE-EC
Confidence            578889998886432  34899999998          889999999999999999999999998753    56662 55


Q ss_pred             ccc
Q 019312           99 GLD  101 (343)
Q Consensus        99 gl~  101 (343)
                      |.+
T Consensus        77 g~~   79 (623)
T PRK10261         77 KML   79 (623)
T ss_pred             CEE
Confidence            543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=1e-06  Score=91.06  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=48.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++.++++.|+.  ..+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++
T Consensus         2 l~i~~ls~~~~~--~~il~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~----~G~i   58 (530)
T PRK15064          2 LSTANITMQFGA--KPLFENISVKF----------GGGNRYGLIGANGCGKSTFMKILGGDLEPS----AGNV   58 (530)
T ss_pred             EEEEEEEEEeCC--cEeEeCCEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE
Confidence            467788888863  24899999998          899999999999999999999999988753    5666

>PRK08118 topology modulation protein; Reviewed

Probab=98.25  E-value=9.2e-06  Score=71.88  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=31.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.|+|+||+||||||||+.|++.++ .++++.|.+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~-~~~~~lD~l   35 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN-IPVHHLDAL   35 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC-CCceecchh
Confidence            4689999999999999999999999 888888877

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.24  E-value=4.2e-06  Score=79.93  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=67.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      .+|+++|++||||||+++.|++.++...+||.|.+.  ..+. ...     .....     . .....    ........
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r--~~~~-~~~-----~~~~~-----~-~~~~~----~~~~~~~~   64 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLR--QSLF-GHG-----EWGEY-----K-FTKEK----EDLVTKAQ   64 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHH--HHhc-CCC-----ccccc-----c-cChHH----HHHHHHHH
Confidence            688999999999999999999999337888888762  1110 000     00000     0 00000    01111222


Q ss_pred             hHHHHHHHhcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      ...+.+..+.|.. +|+.+|.+   +.+.+..                  +.....+.+.++++.++.+++.+|+.+|-.
T Consensus        65 ~~~~~~~l~~g~~-vIid~~~~~~~~~~~~~~------------------la~~~~~~~~~v~l~~~~e~~~~R~~~R~~  125 (300)
T PHA02530         65 EAAALAALKSGKS-VIISDTNLNPERRRKWKE------------------LAKELGAEFEEKVFDVPVEELVKRNRKRGE  125 (300)
T ss_pred             HHHHHHHHHcCCe-EEEeCCCCCHHHHHHHHH------------------HHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence            3344555556765 55555544   2221110                  001123456678999999999999999943

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.24  E-value=1.2e-06  Score=84.36  Aligned_cols=63  Identities=19%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.+.+++..++..+  ++.++++.+          +.|++++++||||||||||++.+|+...|.    +|.+ ++.|.
T Consensus         2 ~i~i~~~~~~~~~~~--a~~di~l~i----------~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~----~G~I-~~~~~   64 (345)
T COG1118           2 SIRINNVKKRFGAFG--ALDDISLDI----------KSGELVALLGPSGAGKSTLLRIIAGLETPD----AGRI-RLNGR   64 (345)
T ss_pred             ceeehhhhhhccccc--ccccceeee----------cCCcEEEEECCCCCcHHHHHHHHhCcCCCC----CceE-EECCE
Confidence            345566666666443  466889987          889999999999999999999999998865    6777 57777

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.24  E-value=1.7e-06  Score=78.91  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+-.|...  .++.++++.+          ++|++..|+||||+|||||.-.+++.++..    +|++ .++|++
T Consensus         2 I~i~nv~K~y~~~--~vl~~isl~i----------~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d----~G~i-~i~g~~   64 (252)
T COG4604           2 ITIENVSKSYGTK--VVLDDVSLDI----------PKGGITSIIGPNGAGKSTLLSMMSRLLKKD----SGEI-TIDGLE   64 (252)
T ss_pred             eeehhhhHhhCCE--Eeeccceeee----------cCCceeEEECCCCccHHHHHHHHHHhcccc----CceE-EEeeee
Confidence            4566777777643  3788999997          899999999999999999999999999833    7888 589999


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      ++.-
T Consensus        65 ~~~~   68 (252)
T COG4604          65 LTST   68 (252)
T ss_pred             cccC
Confidence            8643

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.24  E-value=7.9e-07  Score=91.05  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      .++++.|+.  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.++..
T Consensus         2 ~nl~~~~~~--~~il~~vs~~i----------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~~~~   64 (491)
T PRK10982          2 SNISKSFPG--VKALDNVNLKV----------RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSI-LFQGKEIDF   64 (491)
T ss_pred             CceEEEeCC--EEeeeeeeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----ceEE-EECCEECCC
Confidence            356666753  34899999998          899999999999999999999999998754    6888 477877743

>PRK14530 adenylate kinase; Provisional

Probab=98.23  E-value=2.9e-06  Score=77.63  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++.|+|+||+||||||+++.|++.++ ...|+.|.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~-~~~i~~g~~   37 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFG-VEHVTTGDA   37 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC-CeEEeccHH
Confidence            45799999999999999999999998 888888887

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.23  E-value=1.3e-06  Score=90.85  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      -+++.++++.|+... .+++++++++          .+|.+++|+||||||||||++.|++...|.    .|++
T Consensus         4 ~i~~~nls~~~~~~~-~il~~is~~i----------~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~----~G~i   62 (552)
T TIGR03719         4 IYTMNRVSKVVPPKK-EILKDISLSF----------FPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----NGEA   62 (552)
T ss_pred             EEEEeeEEEecCCCC-eeecCceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE
Confidence            477889999997333 4899999998          899999999999999999999999998753    5666

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.22  E-value=1.4e-06  Score=79.37  Aligned_cols=58  Identities=24%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +++..|...   .. ++++++          .+ ++++|+||||||||||++.|++.++|.    .|++ .+.|.++.
T Consensus         5 ~l~~~~~~~---~~-~vsl~i----------~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~~   62 (214)
T cd03297           5 DIEKRLPDF---TL-KIDFDL----------NE-EVTGIFGASGAGKSTLLRCIAGLEKPD----GGTI-VLNGTVLF   62 (214)
T ss_pred             eeeEecCCe---ee-CceEEE----------cc-eeEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCEecc
Confidence            677777653   23 999997          88 999999999999999999999998754    6888 46776654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.22  E-value=1.4e-06  Score=81.53  Aligned_cols=59  Identities=17%  Similarity=0.241  Sum_probs=48.3

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +.++++.      ..++++++++          .+|++++|+||||||||||++.|++..+ .    .|++ .+.|.++.
T Consensus         3 ~~~l~~~------~~l~~vsl~i----------~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~----~G~i-~~~g~~i~   60 (248)
T PRK03695          3 LNDVAVS------TRLGPLSAEV----------RAGEILHLVGPNGAGKSTLLARMAGLLP-G----SGSI-QFAGQPLE   60 (248)
T ss_pred             ccccchh------ceecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCC-C----CeEE-EECCEecC
Confidence            4556664      2689999998          8999999999999999999999999875 3    5888 47887775


Q ss_pred             C
Q 019312          104 T  104 (343)
Q Consensus       104 T  104 (343)
                      .
T Consensus        61 ~   61 (248)
T PRK03695         61 A   61 (248)
T ss_pred             c
Confidence            3

>PLN03073 ABC transporter F family; Provisional

Probab=98.22  E-value=1.6e-06  Score=93.07  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .-+++.++++.|+... .+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++
T Consensus       507 ~~L~~~~ls~~y~~~~-~il~~vsl~i----------~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~----~G~I  566 (718)
T PLN03073        507 PIISFSDASFGYPGGP-LLFKNLNFGI----------DLDSRIAMVGPNGIGKSTILKLISGELQPS----SGTV  566 (718)
T ss_pred             ceEEEEeeEEEeCCCC-eeEeccEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CceE
Confidence            4588999999996433 3899999998          899999999999999999999999998754    5666

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.22  E-value=1.4e-06  Score=89.22  Aligned_cols=68  Identities=15%  Similarity=0.050  Sum_probs=54.3

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .-+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..++.   ..|++ .+.|
T Consensus       259 ~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~---~~G~i-~~~g  322 (490)
T PRK10938        259 PRIVLNNGVVSYND--RPILHNLSWQV----------NPGEHWQIVGPNGAGKSTLLSLITGDHPQG---YSNDL-TLFG  322 (490)
T ss_pred             ceEEEeceEEEECC--eeEEeeceEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCcc---cCCeE-EEec
Confidence            35788899988864  24899999998          899999999999999999999999976521   15777 4677


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus       323 ~~~~  326 (490)
T PRK10938        323 RRRG  326 (490)
T ss_pred             ccCC
Confidence            6553

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.22  E-value=1.6e-06  Score=89.59  Aligned_cols=68  Identities=15%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             ceeecccCCcCCcc---------cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           21 HYSSFYSPFLHPKR---------RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        21 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      -+++.++++.|+..         ...+++++++++          .+|++++|+||||||||||++.|++.++ .    .
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i----------~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~----~  339 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL----------RPGETLGLVGESGSGKSTTGLALLRLIN-S----Q  339 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEE----------cCCCEEEEECCCCCCHHHHHHHHhCcCC-C----C
Confidence            47889999988631         234899999998          8999999999999999999999999875 3    6


Q ss_pred             CceEEEecccccC
Q 019312           92 DKMQVYKGLDITT  104 (343)
Q Consensus        92 Ds~qvy~gl~I~T  104 (343)
                      |++ .+.|.++..
T Consensus       340 G~i-~~~g~~i~~  351 (529)
T PRK15134        340 GEI-WFDGQPLHN  351 (529)
T ss_pred             cEE-EECCEEccc
Confidence            888 478877753

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.22  E-value=1.7e-06  Score=79.25  Aligned_cols=43  Identities=23%  Similarity=0.223  Sum_probs=37.8

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++++++++          .+|++++|+||||||||||++.|++..+|.    .|++
T Consensus         2 vl~~vs~~i----------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~----sG~i   44 (213)
T PRK15177          2 VLDKTDFVM----------GYHEHIGILAAPGSGKTTLTRLLCGLDAPD----EGDF   44 (213)
T ss_pred             eeeeeeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCccCC----CCCE
Confidence            478899997          899999999999999999999999987644    5666

>PRK03839 putative kinase; Provisional

Probab=98.21  E-value=5.7e-06  Score=73.29  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+|++||||||+++.||+.++ ..+|+.|.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~-~~~id~d~~   34 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG-YEYVDLTEF   34 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEehhhh
Confidence            589999999999999999999998 889998876

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.21  E-value=1.4e-06  Score=89.64  Aligned_cols=128  Identities=17%  Similarity=0.301  Sum_probs=80.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD  140 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~  140 (343)
                      .|+|+|+.||||||+++.||+.++ .++|+.|.. +.+             ..+.     ...+..+ .+....|++...
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg-~~~id~D~~-i~~-------------~~g~-----~i~~i~~-~~Ge~~fr~~E~   60 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLD-LQFIDMDEE-IER-------------REGR-----SVRRIFE-EDGEEYFRLKEK   60 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHH-HHH-------------HcCC-----CHHHHHH-HhhhHHHHHHHH
Confidence            478999999999999999999998 889988876 111             1111     0111112 345577887777


Q ss_pred             HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 019312          141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLE  220 (343)
Q Consensus       141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~  220 (343)
                      +.++++....+..|-+||....         |+...        ..+    + ...++||+++.+.+.+|+..|-.-++.
T Consensus        61 ~~l~~l~~~~~~Vis~Gggvv~---------~~~~r--------~~l----~-~~~vI~L~as~e~l~~Rl~~~~RPLl~  118 (488)
T PRK13951         61 ELLRELVERDNVVVATGGGVVI---------DPENR--------ELL----K-KEKTLFLYAPPEVLMERVTTENRPLLR  118 (488)
T ss_pred             HHHHHHhhcCCEEEECCCcccc---------ChHHH--------HHH----h-cCeEEEEECCHHHHHHHhccCCCCCcc
Confidence            8888887666654446664321         22110        000    1 123789999999999999875333333


Q ss_pred             ccHHHHHHHHHh
Q 019312          221 SGMFEELAEFFD  232 (343)
Q Consensus       221 ~GlleEv~~l~~  232 (343)
                      .+ .++++++++
T Consensus       119 ~~-~e~l~~L~~  129 (488)
T PRK13951        119 EG-KERIREIWE  129 (488)
T ss_pred             cc-HHHHHHHHH
Confidence            22 456666654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.3e-06  Score=92.53  Aligned_cols=58  Identities=16%  Similarity=0.080  Sum_probs=48.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +++.++++.|..  ..+++++++++          .+|.+++|+||||||||||++.|++...|.    .|++.
T Consensus         2 i~i~nls~~~g~--~~~l~~vs~~i----------~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd----~G~I~   59 (638)
T PRK10636          2 IVFSSLQIRRGV--RVLLDNATATI----------NPGQKVGLVGKNGCGKSTLLALLKNEISAD----GGSYT   59 (638)
T ss_pred             EEEEEEEEEeCC--ceeecCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence            467788888853  34899999998          899999999999999999999999987643    56664

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.21  E-value=6.7e-06  Score=74.39  Aligned_cols=127  Identities=22%  Similarity=0.318  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC-cccChh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD-VEFTPD  133 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~-~~~s~~  133 (343)
                      ..+.+++|.|++||||||++..+...+  +...+||+|.+.  .-+      |...+.       ... .+.+ ...+..
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r--~~~------p~~~~~-------~~~-~~~~~~~~~~~   76 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR--QFH------PDYDEL-------LKA-DPDEASELTQK   76 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG--GGS------TTHHHH-------HHH-HCCCTHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH--Hhc------cchhhh-------hhh-hhhhhHHHHHH
Confidence            567899999999999999999999887  335567777662  111      111111       011 1111 012222


Q ss_pred             hhhhhhhHHHHHHHhcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312          134 DFRLQADNAISDIISRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY  210 (343)
Q Consensus       134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R  210 (343)
                      .-...+..+++.+.+++. .|++-||..   ++..++..        +.          ...|.+.++++.++.+.-..|
T Consensus        77 ~a~~~~~~~~~~a~~~~~-nii~E~tl~~~~~~~~~~~~--------~k----------~~GY~v~l~~v~~~~e~s~~r  137 (199)
T PF06414_consen   77 EASRLAEKLIEYAIENRY-NIIFEGTLSNPSKLRKLIRE--------AK----------AAGYKVELYYVAVPPELSIER  137 (199)
T ss_dssp             HHHHHHHHHHHHHHHCT---EEEE--TTSSHHHHHHHHH--------HH----------CTT-EEEEEEE---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-CEEEecCCCChhHHHHHHHH--------HH----------cCCceEEEEEEECCHHHHHHH
Confidence            333455566777776666 566666643   22222221        11          124778888888899999999


Q ss_pred             HHHHHHHH
Q 019312          211 LNKRVDDM  218 (343)
Q Consensus       211 I~~Rv~~M  218 (343)
                      +..|+.+=
T Consensus       138 v~~R~~~~  145 (199)
T PF06414_consen  138 VRQRYEEG  145 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99998544

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.19  E-value=1.5e-06  Score=82.08  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++++.|+... .++++++ .+          .+|++++|+||||||||||++.|++.++|.    .|++
T Consensus         5 ~~~~~y~~~~-~~l~~i~-~i----------~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~----~G~I   57 (255)
T cd03236           5 EPVHRYGPNS-FKLHRLP-VP----------REGQVLGLVGPNGIGKSTALKILAGKLKPN----LGKF   57 (255)
T ss_pred             CcceeecCcc-hhhhcCC-CC----------CCCCEEEEECCCCCCHHHHHHHHhCCcCCC----CceE
Confidence            5777776433 3778887 34          789999999999999999999999998754    5665

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14527 adenylate kinase; Provisional

Probab=98.19  E-value=2.8e-06  Score=76.19  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++++|+|+||+||||||+++.|+..++ ...++.|.+
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~-~~~is~gd~   40 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG-LKKLSTGDI   40 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-CCCCCccHH
Confidence            4578999999999999999999999998 888888887

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.19  E-value=1.8e-06  Score=89.00  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             cceeecccCCcCCc---ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           20 QHYSSFYSPFLHPK---RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        20 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-+++.++++.|+.   +...+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++.
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~----~G~i~  342 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEV----------KEGEIFGIVGTSGAGKTTLSKIIAGVLEPT----SGEVN  342 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE
Confidence            35889999999863   2234899999998          899999999999999999999999998754    67774

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.19  E-value=6.1e-06  Score=74.65  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|.|++||||||+++.|++.++...+|+.|..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf   34 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF   34 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence            5899999999999999999999855889999988

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.18  E-value=1.8e-06  Score=91.85  Aligned_cols=55  Identities=18%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      ..+++.+++|.|+.+. .+++++++++          ++|++++|+||||||||||++.|++..++
T Consensus       450 ~~i~~~nv~~~~~~~~-~il~~isl~i----------~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~  504 (659)
T TIGR00954       450 NGIKFENIPLVTPNGD-VLIESLSFEV----------PSGNHLLICGPNGCGKSSLFRILGELWPV  504 (659)
T ss_pred             CeEEEEeeEEECCCCC-eeeecceEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4699999999998554 4899999998          89999999999999999999999998874

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.18  E-value=1.7e-06  Score=77.44  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      .++++++|+||||||||||++.|++...|.    .|++. +.|.++
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g~~i   63 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN----GDNDE-WDGITP   63 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC----CcEEE-ECCEEE
Confidence            789999999999999999999999998754    67773 666543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.17  E-value=4.1e-06  Score=86.40  Aligned_cols=66  Identities=21%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             ceeecccCCcCCc---------ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           21 HYSSFYSPFLHPK---------RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        21 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      -++..+++-.|..         +...+++++++.+          .+|++++|+|.||||||||++.|++...|.    +
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l----------~~GE~lglVGeSGsGKSTlar~i~gL~~P~----~  345 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL----------REGETLGLVGESGSGKSTLARILAGLLPPS----S  345 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEe----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----C
Confidence            3445666666663         2345789999998          999999999999999999999999999864    7


Q ss_pred             CceEEEeccc
Q 019312           92 DKMQVYKGLD  101 (343)
Q Consensus        92 Ds~qvy~gl~  101 (343)
                      |++ +|.|.+
T Consensus       346 G~i-~~~g~~  354 (539)
T COG1123         346 GSI-IFDGQD  354 (539)
T ss_pred             ceE-EEeCcc
Confidence            888 588876

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.17  E-value=2.5e-06  Score=88.12  Aligned_cols=72  Identities=21%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             CCCCCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           14 YHHQQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      |...-...+++.+++|.|..+. ..+|+++++++          .+|.+++|+||||||||||++.|++..+|.    .|
T Consensus        14 y~~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI----------~~GEivgIiGpNGSGKSTLLkiLaGLl~P~----sG   79 (549)
T PRK13545         14 YKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEV----------PEGEIVGIIGLNGSGKSTLSNLIAGVTMPN----KG   79 (549)
T ss_pred             ccccccceeEEEEEEEecCCCccceEEeeeEEEE----------eCCCEEEEEcCCCCCHHHHHHHHhCCCCCC----ce
Confidence            3444445678888888887753 24899999998          899999999999999999999999998754    56


Q ss_pred             ceEEEecc
Q 019312           93 KMQVYKGL  100 (343)
Q Consensus        93 s~qvy~gl  100 (343)
                      .+. +.|.
T Consensus        80 eI~-I~G~   86 (549)
T PRK13545         80 TVD-IKGS   86 (549)
T ss_pred             EEE-ECCE
Confidence            663 4453

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=2.3e-06  Score=85.84  Aligned_cols=68  Identities=24%  Similarity=0.306  Sum_probs=55.9

Q ss_pred             cccCCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312            5 LFSPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      -|.+|.|..-.||   .+-+.+|+|.||...| .+.++++-+          .-...|+|+||||+|||||++.|.+.+.
T Consensus       573 kF~FPep~~L~PP---vLGlH~VtFgy~gqkp-LFkkldFGi----------DmdSRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  573 KFQFPEPTKLNPP---VLGLHDVTFGYPGQKP-LFKKLDFGI----------DMDSRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             EEecCCCCCCCCC---eeecccccccCCCCCc-hhhcccccc----------cccceeEEECCCCccHHHHHHHHhcCCC
Confidence            4778888888887   4568899999998776 667777665          4456899999999999999999999887


Q ss_pred             CC
Q 019312           85 PS   86 (343)
Q Consensus        85 ~~   86 (343)
                      |.
T Consensus       639 P~  640 (807)
T KOG0066|consen  639 PN  640 (807)
T ss_pred             CC
Confidence            64

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.16  E-value=3.6e-06  Score=86.73  Aligned_cols=63  Identities=13%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .-+++.+++.       ..++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus       267 ~~l~~~~l~~-------~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~----~G~i~-~~g  324 (510)
T PRK15439        267 PVLTVEDLTG-------EGFRNISLEV----------RAGEILGLAGVVGAGRTELAETLYGLRPAR----GGRIM-LNG  324 (510)
T ss_pred             ceEEEeCCCC-------CCccceeEEE----------cCCcEEEEECCCCCCHHHHHHHHcCCCCCC----CcEEE-ECC
Confidence            3477778873       1589999998          889999999999999999999999988754    67784 777


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus       325 ~~i~~  329 (510)
T PRK15439        325 KEINA  329 (510)
T ss_pred             EECCC
Confidence            77753

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.16  E-value=9.9e-07  Score=72.56  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=30.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~-~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG-FPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT-CEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-CeEEEecce
Confidence            589999999999999999999998 888888874

...

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.16  E-value=2.7e-06  Score=87.40  Aligned_cols=63  Identities=14%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.      .+++++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .|.|.
T Consensus       257 ~l~~~~~~~~------~~l~~isl~i----------~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~----~G~i-~~~g~  315 (501)
T PRK11288        257 RLRLDGLKGP------GLREPISFSV----------RAGEIVGLFGLVGAGRSELMKLLYGATRRT----AGQV-YLDGK  315 (501)
T ss_pred             EEEEeccccC------CcccceeEEE----------eCCcEEEEEcCCCCCHHHHHHHHcCCCcCC----CceE-EECCE
Confidence            4667777642      3789999998          899999999999999999999999998754    6888 47777


Q ss_pred             cccC
Q 019312          101 DITT  104 (343)
Q Consensus       101 ~I~T  104 (343)
                      ++..
T Consensus       316 ~~~~  319 (501)
T PRK11288        316 PIDI  319 (501)
T ss_pred             ECCC
Confidence            7643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.16  E-value=2.4e-06  Score=80.97  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus        37 ~~il~~is~~i----------~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~----~G~I~-~~g   85 (264)
T PRK13546         37 FFALDDISLKA----------YEGDVIGLVGINGSGKSTLSNIIGGSLSPT----VGKVD-RNG   85 (264)
T ss_pred             eEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCcCCC----ceEEE-ECC
Confidence            34889999998          899999999999999999999999998754    56663 444

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.15  E-value=4.3e-06  Score=82.99  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=57.5

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      =.++++.+|.|.|+... =.+--+++++          ++|+++.|+|-|||||||+++.|-+.+.|.    +|.+ ...
T Consensus       320 ~~~lelrnvrfay~~~~-FhvgPiNl~i----------krGelvFliG~NGsGKST~~~LLtGL~~Pq----sG~I-~ld  383 (546)
T COG4615         320 WKTLELRNVRFAYQDNA-FHVGPINLTI----------KRGELVFLIGGNGSGKSTLAMLLTGLYQPQ----SGEI-LLD  383 (546)
T ss_pred             ccceeeeeeeeccCccc-ceecceeeEE----------ecCcEEEEECCCCCcHHHHHHHHhcccCCC----CCce-eEC
Confidence            48999999999999654 2445677886          899999999999999999999999999865    6777 467


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.+|.
T Consensus       384 g~pV~  388 (546)
T COG4615         384 GKPVS  388 (546)
T ss_pred             CccCC
Confidence            77764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.15  E-value=2.4e-06  Score=85.76  Aligned_cols=53  Identities=26%  Similarity=0.437  Sum_probs=46.6

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN  105 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~  105 (343)
                      +++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|.++...
T Consensus        43 ~L~~isl~i----------~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~----sG~I-~i~G~~i~~~   95 (400)
T PRK10070         43 GVKDASLAI----------EEGEIFVIMGLSGSGKSTMVRLLNRLIEPT----RGQV-LIDGVDIAKI   95 (400)
T ss_pred             EEEeEEEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCC----CCEE-EECCEECCcC
Confidence            689999998          899999999999999999999999998754    7888 4888887643

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.15  E-value=3.1e-06  Score=77.35  Aligned_cols=63  Identities=21%  Similarity=0.289  Sum_probs=49.4

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..++=.|++ .-.+++++++++          .+|++++|+||||+||||+++.||..+.|.    .|++ ...|.|+-
T Consensus         5 ~~l~K~y~~-~v~AvrdVSF~a----------e~Gei~GlLG~NGAGKTT~LRmiatlL~P~----~G~v-~idg~d~~   67 (245)
T COG4555           5 TDLTKSYGS-KVQAVRDVSFEA----------EEGEITGLLGENGAGKTTLLRMIATLLIPD----SGKV-TIDGVDTV   67 (245)
T ss_pred             eehhhhccC-HHhhhhheeEEe----------ccceEEEEEcCCCCCchhHHHHHHHhccCC----CceE-EEeecccc
Confidence            344444554 233789999998          999999999999999999999999999864    6777 35677653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=2.4e-06  Score=88.39  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      -+++.++++.|..  ..+++++++++          .+|.+++|+||||||||||++.|++.+.|.    .|++
T Consensus       319 ~l~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~----~G~i  376 (530)
T PRK15064        319 ALEVENLTKGFDN--GPLFKNLNLLL----------EAGERLAIIGENGVGKTTLLRTLVGELEPD----SGTV  376 (530)
T ss_pred             eEEEEeeEEeeCC--ceeecCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE
Confidence            5888999998864  34899999998          899999999999999999999999988654    5666

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.14  E-value=2.2e-06  Score=88.45  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=47.1

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc--CCCceecCCceE
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF--FPSEIINSDKMQ   95 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~--~~~eIIs~Ds~q   95 (343)
                      ++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++..  .|.    .|++.
T Consensus         2 ~~~~l~~~~~~--~~~l~~is~~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~----~G~i~   60 (520)
T TIGR03269         2 EVKNLTKKFDG--KEVLKNISFTI----------EEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT----SGRII   60 (520)
T ss_pred             EEEEEEEEECC--eEeeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhcccCCCC----ceEEE
Confidence            56778888853  34899999998          889999999999999999999999986  333    56664

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.14  E-value=2.2e-06  Score=90.74  Aligned_cols=58  Identities=16%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +++.++++.|..  ..++.++++++          .+|.+++|+||||||||||++.|++...|.    .|++.
T Consensus         4 l~i~~ls~~~~~--~~il~~is~~i----------~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~----~G~I~   61 (635)
T PRK11147          4 ISIHGAWLSFSD--APLLDNAELHI----------EDNERVCLVGRNGAGKSTLMKILNGEVLLD----DGRII   61 (635)
T ss_pred             EEEeeEEEEeCC--ceeEeCcEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CeEEE
Confidence            677888888864  34899999998          889999999999999999999999987643    56663

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.13  E-value=3.2e-06  Score=89.48  Aligned_cols=59  Identities=10%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .-+++.++++.|..  ..+++++++++          .+|.+++|+||||||||||++.|++.+.|.    .|++
T Consensus       318 ~~l~~~~l~~~~~~--~~il~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~----~G~i  376 (635)
T PRK11147        318 IVFEMENVNYQIDG--KQLVKDFSAQV----------QRGDKIALIGPNGCGKTTLLKLMLGQLQAD----SGRI  376 (635)
T ss_pred             ceEEEeeeEEEECC--eEEEcCcEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEE
Confidence            45888999998864  34899999998          899999999999999999999999988754    5666

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.12  E-value=5.3e-06  Score=76.58  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCc---eecCCceEEEeccc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE---IINSDKMQVYKGLD  101 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e---IIs~Ds~qvy~gl~  101 (343)
                      +..+|+|.|+|||||||+++.|...++ .+   +|+.|+.  |++..
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~-~~~~~~I~~D~Y--Yk~~~   50 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLG-VEKVVVISLDDY--YKDQS   50 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhC-cCcceEeecccc--ccchh
Confidence            357999999999999999999999998 44   8999999  88553

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=3.2e-06  Score=79.80  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC-ceecCCceEEEecccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS-EIINSDKMQVYKGLDI  102 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~-eIIs~Ds~qvy~gl~I  102 (343)
                      ....++.|..  ..+++++++++          .+|++++|+|+||||||||++.|++.++|. .....|++ .+.|.++
T Consensus        11 ~~~~~~~~~~--~~~l~~vs~~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i-~~~g~~i   77 (261)
T PRK14263         11 CKLDKIFYGN--FMAVRDSHVPI----------RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV-HFLGQDV   77 (261)
T ss_pred             EEeEEEEeCC--EEEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE-EECCEec
Confidence            3444555542  33889999998          899999999999999999999999988641 11136888 4788777


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      ..
T Consensus        78 ~~   79 (261)
T PRK14263         78 YG   79 (261)
T ss_pred             cc
Confidence            53

>PRK08356 hypothetical protein; Provisional

Probab=98.12  E-value=1.2e-05  Score=72.57  Aligned_cols=34  Identities=12%  Similarity=0.079  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+|+|+||+||||||++..|.+ ++ ..+|+.+..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g-~~~is~~~~   38 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KG-FCRVSCSDP   38 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CC-CcEEeCCCc
Confidence            35799999999999999999964 56 667777765

>PLN03130 ABC transporter C family member; Provisional

Probab=98.12  E-value=4.2e-06  Score=96.90  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             ccceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           19 QQHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      ...+++.+++|.|+.. .+.+|+++++++          ++|+.++|+||+|||||||++.|.+.+++.
T Consensus       612 ~~~I~~~nvsf~y~~~~~~~vL~~inl~i----------~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~  670 (1622)
T PLN03130        612 LPAISIKNGYFSWDSKAERPTLSNINLDV----------PVGSLVAIVGSTGEGKTSLISAMLGELPPR  670 (1622)
T ss_pred             CCceEEEeeEEEccCCCCCceeeceeEEe----------cCCCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence            3579999999999864 244899999998          999999999999999999999999999854

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.11  E-value=2.5e-06  Score=84.11  Aligned_cols=60  Identities=17%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      ++++.|...   .+ ++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++..
T Consensus         4 ~l~~~~~~~---~~-~isl~i----------~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~----~G~I-~~~g~~i~~   63 (354)
T TIGR02142         4 RFSKRLGDF---SL-DADFTL----------PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD----EGEI-VLNGRTLFD   63 (354)
T ss_pred             EEEEEECCE---EE-EEEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEECcc
Confidence            455555432   24 788887          889999999999999999999999998754    6888 477877753

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK04182 cytidylate kinase; Provisional

Probab=98.11  E-value=4.5e-06  Score=73.05  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+|++||||||+++.|++.++ .++++.|.+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg-~~~id~~~~   34 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG-LKHVSAGEI   34 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-CcEecHHHH
Confidence            689999999999999999999998 888876654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.11  E-value=4.1e-06  Score=86.06  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.+++.       ..++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus       257 ~l~~~~l~~-------~~l~~vsl~i----------~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~----~G~I-~~~g~  314 (501)
T PRK10762        257 RLKVDNLSG-------PGVNDVSFTL----------RKGEILGVSGLMGAGRTELMKVLYGALPRT----SGYV-TLDGH  314 (501)
T ss_pred             EEEEeCccc-------CCcccceEEE----------cCCcEEEEecCCCCCHHHHHHHHhCCCCCC----ceEE-EECCE
Confidence            466777763       2589999998          889999999999999999999999998754    6888 47787


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus       315 ~i~~~  319 (501)
T PRK10762        315 EVVTR  319 (501)
T ss_pred             ECCCC
Confidence            77543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.11  E-value=4.2e-06  Score=84.78  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.+++=.||.  --+++++++++          .+|++.+|+|-||+|||||++.|.+.+.|.    +|.+ +.+|.
T Consensus         4 ~l~~~~itK~f~~--~~And~V~l~v----------~~GeIHaLLGENGAGKSTLm~iL~G~~~P~----~GeI-~v~G~   66 (501)
T COG3845           4 ALEMRGITKRFPG--VVANDDVSLSV----------KKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEI-RVDGK   66 (501)
T ss_pred             eEEEeccEEEcCC--EEecCceeeee----------cCCcEEEEeccCCCCHHHHHHHHhCcccCC----cceE-EECCE
Confidence            4677777777872  33678999998          999999999999999999999999999875    7888 58899


Q ss_pred             cccCCCCCccccccc
Q 019312          101 DITTNKIPSHKRHNV  115 (343)
Q Consensus       101 ~I~T~kp~~~e~~~i  115 (343)
                      .+.-..|..+-+.||
T Consensus        67 ~v~~~sP~dA~~~GI   81 (501)
T COG3845          67 EVRIKSPRDAIRLGI   81 (501)
T ss_pred             EeccCCHHHHHHcCC
Confidence            888788887777666

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.11  E-value=6.7e-06  Score=76.90  Aligned_cols=114  Identities=18%  Similarity=0.323  Sum_probs=64.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCC----CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~----~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      +|+|+|+.||||||+++.|++.+..    ..+++.|.+.               +       .+....  + .+ ...+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr---------------~-------~~~~~~--~-~~-e~~~~   54 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR---------------E-------SFPVWK--E-KY-EEFIR   54 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH---------------H-------HhHHhh--H-Hh-HHHHH
Confidence            4789999999999999999998741    1223333220               0       000000  0 01 11223


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      ......+....++|.. ||+.|+++| +......       +.       +.......+++++++++.+.+.+|...|-+
T Consensus        55 ~~~~~~i~~~l~~~~~-VI~D~~~~~-~~~r~~l-------~~-------~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~  118 (249)
T TIGR03574        55 DSTLYLIKTALKNKYS-VIVDDTNYY-NSMRRDL-------IN-------IAKEYNKNYIIIYLKAPLDTLLRRNIERGE  118 (249)
T ss_pred             HHHHHHHHHHHhCCCe-EEEeccchH-HHHHHHH-------HH-------HHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence            3334566677777765 666666544 3222110       00       000112457789999999999999988853

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PLN03232 ABC transporter C family member; Provisional

Probab=98.10  E-value=4.6e-06  Score=96.03  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             cceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           20 QHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      ..+++.+++|.|+.. ...+|+++++++          ++|+.++|+||+|||||||++.|.+.+++.
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i----------~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~  670 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEI----------PVGSLVAIVGGTGEGKTSLISAMLGELSHA  670 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence            479999999999864 244899999998          999999999999999999999999998853

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.10  E-value=3.3e-06  Score=83.28  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=46.7

Q ss_pred             ccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           26 YSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      +++..|...   . .++++++          .+|++++|+||||||||||++.|++..+|.    .|++ .+.|.++.
T Consensus         5 ~l~k~~~~~---~-~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~----~G~I-~~~g~~~~   63 (352)
T PRK11144          5 NFKQQLGDL---C-LTVNLTL----------PAQGITAIFGRSGAGKTSLINAISGLTRPQ----KGRI-VLNGRVLF   63 (352)
T ss_pred             EEEEEeCCE---E-EEEEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEEcc
Confidence            556666432   1 2788887          889999999999999999999999998754    6888 47787764

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.09  E-value=3.8e-06  Score=77.68  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=27.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCC------CceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFP------SEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~------~eIIs~Ds~   94 (343)
                      +++|.||||||||||++.|+..+.+      ..+|+.|..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            5899999999999999999998841      345667776

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.09  E-value=4.2e-06  Score=85.65  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.+++=+|+.-  .+|+++++++          .+|++.+++|-||+|||||++.|++.++|.    .|.+ .+.|.
T Consensus         8 ll~~~~i~K~FggV--~AL~~v~l~v----------~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~----~G~I-~~~G~   70 (500)
T COG1129           8 LLELRGISKSFGGV--KALDGVSLTV----------RPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEI-LIDGK   70 (500)
T ss_pred             eeeeecceEEcCCc--eeeccceeEE----------eCceEEEEecCCCCCHHHHHHHHhCcccCC----CceE-EECCE
Confidence            45677888777754  4799999998          999999999999999999999999999865    7888 58898


Q ss_pred             cccCCCCCccccccc
Q 019312          101 DITTNKIPSHKRHNV  115 (343)
Q Consensus       101 ~I~T~kp~~~e~~~i  115 (343)
                      .+.-..|...+..||
T Consensus        71 ~~~~~sp~~A~~~GI   85 (500)
T COG1129          71 PVAFSSPRDALAAGI   85 (500)
T ss_pred             EccCCCHHHHHhCCc
Confidence            887777777777776

>PRK12338 hypothetical protein; Provisional

Probab=98.08  E-value=3.3e-05  Score=75.35  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee-cCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII-NSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII-s~Ds~   94 (343)
                      ++.+|+|.|++||||||+|..||+.++ ...+ +.|.+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~-~~~~~~tD~~   39 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLN-IKHLIETDFI   39 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCC-CeEEccChHH
Confidence            357999999999999999999999998 5544 66655

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.08  E-value=3.4e-06  Score=87.73  Aligned_cols=60  Identities=15%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-+++.++++.|..  ..+++++++++          .+|.+++|+||||||||||++.|++.++|.    .|++.
T Consensus       321 ~~l~~~~l~~~~~~--~~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~----~G~i~  380 (552)
T TIGR03719       321 KVIEAENLSKGFGD--KLLIDDLSFKL----------PPGGIVGVIGPNGAGKSTLFRMITGQEQPD----SGTIK  380 (552)
T ss_pred             eEEEEeeEEEEECC--eeeeccceEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCCCCC----CeEEE
Confidence            35888899998864  24899999998          899999999999999999999999988754    56663

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.07  E-value=4.4e-06  Score=78.12  Aligned_cols=43  Identities=30%  Similarity=0.364  Sum_probs=39.6

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+++++++          .+|..++|+|+||||||||++.||+.++|.    .|++
T Consensus        42 aL~disf~i----------~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt----~G~v   84 (249)
T COG1134          42 ALKDISFEI----------YKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKV   84 (249)
T ss_pred             EecCceEEE----------eCCCEEEEECCCCCcHHHHHHHHhCccCCC----CceE
Confidence            899999998          999999999999999999999999999875    5655

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.07  E-value=4.9e-06  Score=88.37  Aligned_cols=71  Identities=23%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             ceeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           21 HYSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -+++.++++.|+.+  ....|+++++++          .+|++++|+||||||||||++.|++..++.    .|++ .|.
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i----------~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~----~G~i-~~~   68 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDI----------YAGEMVAIVGASGSGKSTLMNILGCLDKPT----SGTY-RVA   68 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE-EEC
Confidence            36788999999743  245899999998          899999999999999999999999998754    7888 588


Q ss_pred             cccccCCC
Q 019312           99 GLDITTNK  106 (343)
Q Consensus        99 gl~I~T~k  106 (343)
                      |.++....
T Consensus        69 g~~i~~~~   76 (648)
T PRK10535         69 GQDVATLD   76 (648)
T ss_pred             CEEcCcCC
Confidence            88886543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.07  E-value=3.8e-06  Score=87.51  Aligned_cols=60  Identities=18%  Similarity=0.137  Sum_probs=51.1

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-+++.++++.|...  .+++++++++          .+|.+++|+||||||||||++.|++..+|.    .|++.
T Consensus       323 ~~l~~~~l~~~~~~~--~~l~~isl~i----------~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~----~G~i~  382 (556)
T PRK11819        323 KVIEAENLSKSFGDR--LLIDDLSFSL----------PPGGIVGIIGPNGAGKSTLFKMITGQEQPD----SGTIK  382 (556)
T ss_pred             eEEEEEeEEEEECCe--eeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEE
Confidence            358889999988642  4899999998          899999999999999999999999988754    56663

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.06  E-value=5.3e-06  Score=75.35  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~   94 (343)
                      .++.+|+|+|++|||||||+..|++.++.  ..+|+.|..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            56789999999999999999999999842  346777776

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.05  E-value=2.9e-06  Score=77.61  Aligned_cols=34  Identities=32%  Similarity=0.435  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+|+|+|+.||||||++..|.. ++ ..++++|.+
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~-~g-~~v~d~D~i   38 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAE-MG-CELFEADRV   38 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CC-CeEEeccHH
Confidence            46899999999999999999997 56 788999866

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.04  E-value=9.1e-06  Score=84.34  Aligned_cols=67  Identities=21%  Similarity=0.212  Sum_probs=53.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|.  ....+.++++++          .+|..|+|+|+||+|||||++.|++...|.    .|++...+++
T Consensus         3 ~i~~~~ls~~~g--~~~l~~~~~l~~----------~~G~riGLvG~NGaGKSTLLkilaG~~~~~----~G~i~~~~~~   66 (530)
T COG0488           3 MITLENLSLAYG--DRPLLENVSLTL----------NPGERIGLVGRNGAGKSTLLKILAGELEPD----SGEVTRPKGL   66 (530)
T ss_pred             eEEEeeeEEeeC--CceeecCCccee----------CCCCEEEEECCCCCCHHHHHHHHcCCCcCC----CCeEeecCCc
Confidence            467788888883  334889999998          899999999999999999999999998754    5766555554


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      .|+
T Consensus        67 ~v~   69 (530)
T COG0488          67 RVG   69 (530)
T ss_pred             eEE
Confidence            443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.04  E-value=4.4e-05  Score=70.63  Aligned_cols=28  Identities=32%  Similarity=0.418  Sum_probs=25.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+||||||||||+..|++.+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4578999999999999999999999987

>PLN02200 adenylate kinase family protein

Probab=98.03  E-value=9.8e-06  Score=75.69  Aligned_cols=36  Identities=14%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.+|+|+||+||||||++..|++.++ ...|+.|.+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g-~~his~gdl   77 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG-FKHLSAGDL   77 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC-CeEEEccHH
Confidence            456889999999999999999999998 888888887

>TIGR01351 adk adenylate kinases

Probab=98.01  E-value=1e-05  Score=73.72  Aligned_cols=32  Identities=22%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      |+|+||+||||||++..|++.++ ..+||.|.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g-~~~is~gdl   33 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG-LPHISTGDL   33 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-CCeeehhHH
Confidence            78999999999999999999998 889999887

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.01  E-value=9e-06  Score=76.14  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=56.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .=+++.+|+..|..+  ..|.+++.++          ++++-++|+||||||||||++.++...+|.    ++.+. .-|
T Consensus        30 ~li~l~~v~v~r~gk--~iL~~isW~V----------~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps----sg~~~-~~G   92 (257)
T COG1119          30 PLIELKNVSVRRNGK--KILGDLSWQV----------NPGEHWAIVGPNGAGKTTLLSLLTGEHPPS----SGDVT-LLG   92 (257)
T ss_pred             ceEEecceEEEECCE--eeccccceee----------cCCCcEEEECCCCCCHHHHHHHHhcccCCC----CCcee-eee
Confidence            448899999998844  4799999998          999999999999999999999999998864    45554 346


Q ss_pred             ccccCCCC
Q 019312          100 LDITTNKI  107 (343)
Q Consensus       100 l~I~T~kp  107 (343)
                      ...+....
T Consensus        93 ~~~G~~~~  100 (257)
T COG1119          93 RRFGKGET  100 (257)
T ss_pred             eeccCCcc
Confidence            66654443

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.01  E-value=2.9e-05  Score=80.53  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ..+.+|+++|++||||||+++.++...+ ..+||.|.+.        +                              + 
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g-~~~vn~D~lg--------~------------------------------~-  406 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAG-YKHVNADTLG--------S------------------------------T-  406 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcC-CeEECcHHHH--------H------------------------------H-
Confidence            4578999999999999999999999877 7888888541        0                              1 


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV  215 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv  215 (343)
                      ..+...+.+..++|+ +||+..|.+.-..-.         .+      ..+.....+.+.+++++++.+++.+|+..|-
T Consensus       407 ~~~~~~a~~~L~~G~-sVVIDaTn~~~~~R~---------~~------i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~  469 (526)
T TIGR01663       407 QNCLTACERALDQGK-RCAIDNTNPDAASRA---------KF------LQCARAAGIPCRCFLFNAPLAQAKHNIAFRE  469 (526)
T ss_pred             HHHHHHHHHHHhCCC-cEEEECCCCCHHHHH---------HH------HHHHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence            112334555666777 577777765311100         00      0111223467888999999999999999884

Note that the EC number for the kinase function is: 2.7.1.78

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.00  E-value=6.8e-06  Score=84.76  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++-..++|....+.-.+++++++.+          .+|++++|+|-|||||||++..|.+.+++..-+..|++ .|+|.+
T Consensus         8 V~nL~v~~~~~~~~~~~v~~vsf~v----------~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I-~~~g~d   76 (539)
T COG1123           8 VENLTVEFATDGGRVPAVRDVSFEV----------EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV-ILDGRD   76 (539)
T ss_pred             EeceEEEEecCCcceeeeecceEEe----------cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE-EECCcc
Confidence            3344555665544435889999998          99999999999999999999999999985436667999 699988


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        77 l~~l   80 (539)
T COG1123          77 LLGL   80 (539)
T ss_pred             hhcC
Confidence            7543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=8.8e-06  Score=81.28  Aligned_cols=71  Identities=24%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ...+.+.+.+|+|.|-+.+| .|.++++..          +.++.++|+||+|+||||+++.|.+.+++    ++|++. 
T Consensus       258 ~~~g~v~F~~V~F~y~~~r~-iL~~isf~i----------~~g~tvAiVg~SG~gKsTI~rllfRFyD~----~sG~I~-  321 (497)
T COG5265         258 VRLGAVAFINVSFAYDPRRP-ILNGISFTI----------PLGKTVAIVGESGAGKSTILRLLFRFYDV----NSGSIT-  321 (497)
T ss_pred             cccceEEEEEEEeeccccch-hhcCccccc----------cCccEEEEEeCCCCcHHHHHHHHHHHhCC----cCceEE-
Confidence            44577999999999998888 889999997          88999999999999999999999999983    489985 


Q ss_pred             Eeccccc
Q 019312           97 YKGLDIT  103 (343)
Q Consensus        97 y~gl~I~  103 (343)
                      ..|.||-
T Consensus       322 id~qdir  328 (497)
T COG5265         322 IDGQDIR  328 (497)
T ss_pred             EcchhHH
Confidence            6777763

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.00  E-value=6.7e-06  Score=82.15  Aligned_cols=48  Identities=21%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|.
T Consensus        39 ~l~~vsf~i----------~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~----~G~I-~idG~   86 (382)
T TIGR03415        39 GVANASLDI----------EEGEICVLMGLSGSGKSSLLRAVNGLNPVS----RGSV-LVKDG   86 (382)
T ss_pred             EEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence            688999998          899999999999999999999999998754    7888 46664

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.99  E-value=3.4e-06  Score=73.63  Aligned_cols=107  Identities=20%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             CcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHH
Q 019312           68 TGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDII  147 (343)
Q Consensus        68 TGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~  147 (343)
                      .||||||+++.||+.++ .++|+.|... -             +..+.     +.-+... ..+...|++...+++.++.
T Consensus         1 ~GsGKStvg~~lA~~L~-~~fiD~D~~i-~-------------~~~g~-----si~~i~~-~~G~~~fr~~E~~~l~~l~   59 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG-RPFIDLDDEI-E-------------ERTGM-----SISEIFA-EEGEEAFRELESEALRELL   59 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT-SEEEEHHHHH-H-------------HHHTS-----HHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhC-CCccccCHHH-H-------------HHhCC-----cHHHHHH-cCChHHHHHHHHHHHHHHh
Confidence            49999999999999999 8888888761 1             11110     0011111 3456788888889999999


Q ss_pred             hcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          148 SRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       148 ~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      ......|.+||....-....        +..             .-...+|||+.+.+.+.+|+..+-.
T Consensus        60 ~~~~~VIa~GGG~~~~~~~~--------~~L-------------~~~g~vI~L~~~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   60 KENNCVIACGGGIVLKEENR--------ELL-------------KENGLVIYLDADPEELAERLRARDN  107 (158)
T ss_dssp             CSSSEEEEE-TTGGGSHHHH--------HHH-------------HHHSEEEEEE--HHHHHHHHHHHCT
T ss_pred             ccCcEEEeCCCCCcCcHHHH--------HHH-------------HhCCEEEEEeCCHHHHHHHHhCCCC
Confidence            88777777877644211110        001             1134689999999999999977654

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK01184 hypothetical protein; Provisional

Probab=97.99  E-value=1.4e-05  Score=71.01  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=28.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+||.||||||+++ +++.++ ..+|+.|.+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g-~~~i~~~d~   34 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMG-IPVVVMGDV   34 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcC-CcEEEhhHH
Confidence            589999999999999987 778888 888887665

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.99  E-value=6.2e-06  Score=73.84  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      .+++++++++          .+|.+++|+||||||||||++.+.
T Consensus         9 ~~l~~isl~i----------~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238           9 HNLQNLDVSI----------PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             eeecceEEEE----------cCCCEEEEECCCCCCHHHHHHHHh
Confidence            3789999998          899999999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03073 ABC transporter F family; Provisional

Probab=97.99  E-value=6.4e-06  Score=88.45  Aligned_cols=54  Identities=13%  Similarity=0.022  Sum_probs=46.9

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ....+.+.++++.|.. .+ .+.++++++          .+|..++|+||||||||||++.|++..
T Consensus       174 ~~~~I~i~nls~~y~~-~~-ll~~isl~i----------~~Ge~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        174 AIKDIHMENFSISVGG-RD-LIVDASVTL----------AFGRHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             CceeEEEceEEEEeCC-CE-EEECCEEEE----------CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3466889999999963 33 899999998          899999999999999999999999753

>PRK14532 adenylate kinase; Provisional

Probab=97.98  E-value=1e-05  Score=72.06  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||+++.||+.++ ..+|+.|.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g-~~~is~~d~   34 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG-MVQLSTGDM   34 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-CeEEeCcHH
Confidence            378999999999999999999998 889999877

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.98  E-value=7.3e-06  Score=94.59  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+++.+++|.|+...+.+++++++++          ++|++++|+||||||||||++.|++.+++.    .|++
T Consensus       635 ~~i~~~~~~~~~~~~~~~~l~~isl~i----------~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~----~G~i  695 (1522)
T TIGR00957       635 NSITVHNATFTWARDLPPTLNGITFSI----------PEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHV  695 (1522)
T ss_pred             CcEEEEEeEEEcCCCCCceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCccC----CcEE
Confidence            379999999999865555899999998          899999999999999999999999998753    4665

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14531 adenylate kinase; Provisional

Probab=97.97  E-value=1.4e-05  Score=71.38  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..|+|+||.||||||++..|++.++ ...||.|.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g-~~~is~gd~   36 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHG-LRHLSTGDL   36 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC-CCeEecccH
Confidence            4688999999999999999999998 889999877

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.96  E-value=2.8e-05  Score=72.54  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..|+|+||.||||||+++.||+.++ ..+||.|.+
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g-~~~is~gdl   40 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKEN-LKHINMGNI   40 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-CcEEECChH
Confidence            4589999999999999999999999 899999998

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=1.3e-05  Score=72.45  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      ...+.+++++.          .+|+.+.|.||||||||||.+.||+.+.|.    +|.+ .|++.+|.+
T Consensus        15 ~~lf~~L~f~l----------~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~----~G~v-~~~~~~i~~   68 (209)
T COG4133          15 RTLFSDLSFTL----------NAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEV-YWQGEPIQN   68 (209)
T ss_pred             ceeecceeEEE----------cCCCEEEEECCCCCcHHHHHHHHHcccCCC----CCeE-EecCCCCcc
Confidence            44677888887          889999999999999999999999999865    7888 477777754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.95  E-value=1.9e-05  Score=68.67  Aligned_cols=33  Identities=24%  Similarity=0.506  Sum_probs=30.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|.|++||||||+++.|++.++ .++++.|.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg-~~~~~~~~~   34 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS-LKLISAGDI   34 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC-CceecHHHH
Confidence            689999999999999999999998 888888765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.94  E-value=4.5e-05  Score=73.59  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC------CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF------PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~------~~eIIs~Ds~   94 (343)
                      +.+.+|+|.|||||||||+++.|...+.      ...+|+.|..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            4467999999999999999999887764      1335666665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.93  E-value=8e-05  Score=65.63  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++++++|+|++||||||+++.|++.+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999884

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.93  E-value=1.1e-05  Score=92.49  Aligned_cols=70  Identities=23%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             eeecccCCcCC--cccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHP--KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.++  .+.+.+|+++++++          .+|++++|+||||||||||++.|++..+++ .+..|++ .+.|
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~vs~~i----------~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g-~~~~G~I-~i~G  827 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNNVDGWV----------KPGTLTALMGASGAGKTTLLNVLAERVTTG-VITGGDR-LVNG  827 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECC
Confidence            56777777765  33456899999998          899999999999999999999999987622 2345888 4788


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus       828 ~~~~  831 (1394)
T TIGR00956       828 RPLD  831 (1394)
T ss_pred             EECC
Confidence            7763

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.92  E-value=1.7e-05  Score=70.47  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      |+|+||.||||||++..|++.++ ..+|+.|.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~-~~~i~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG-LPHISTGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-CeEEECcHH
Confidence            78999999999999999999998 888998877

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.92  E-value=1.2e-05  Score=72.29  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC--CCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF--PSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~--~~eIIs~Ds~   94 (343)
                      +|+|+||+|||||||++.|++.++  ...+++.|..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~   36 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY   36 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            589999999999999999999873  2456777765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.92  E-value=6.7e-05  Score=69.10  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=35.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+|+|=||+||||||+++.||+.++ ...++.|.|  ||-+
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg-~~yldTGam--YRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLG-FHYLDTGAM--YRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhC-CCeecccHH--HHHH
Confidence            6889999999999999999999999 999999999  8755

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.92  E-value=1.3e-05  Score=94.07  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=59.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.+++..|+.+...+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I----------~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt----sG~I-~i~G  991 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITF----------YENQITAFLGHNGAGKTTTLSILTGLLPPT----SGTV-LVGG  991 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEE----------cCCcEEEEECCCCChHHHHHHHHhcCCCCC----ceEE-EECC
Confidence            468888999999643345899999998          899999999999999999999999998755    6888 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++.+
T Consensus       992 ~dI~~  996 (2272)
T TIGR01257       992 KDIET  996 (2272)
T ss_pred             EECcc
Confidence            88753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.91  E-value=1.3e-05  Score=65.78  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=20.9

Q ss_pred             EEEEcCCcccHHHHHHHHHhhc
Q 019312           62 VVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~   83 (343)
                      |+|.|++||||||+++.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999996

...

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.91  E-value=1.2e-05  Score=74.07  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      +.+|++++|+||||||||||++.|++..++.    .|++ .+.|.++
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~----~G~i-~~~g~~~   44 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPA----KGTV-KVAGASP   44 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCccc
Confidence            4689999999999999999999999988754    6777 4677654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK06696 uridine kinase; Validated

Probab=97.91  E-value=1.7e-05  Score=73.07  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~   94 (343)
                      ..+.+|+|.|++||||||||..|+..++    +..+++.|.+
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            4567999999999999999999999984    1234567777

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.91  E-value=1.1e-05  Score=78.05  Aligned_cols=45  Identities=31%  Similarity=0.476  Sum_probs=40.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNK  106 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~k  106 (343)
                      ..|++++|+|-||||||||.+++.+...|.    +|++ .++|.||....
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLiept----~G~i-lv~g~di~~~~   96 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEPT----RGEI-LVDGKDIAKLS   96 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCCCC----CceE-EECCcchhcCC
Confidence            889999999999999999999999998865    8999 69999997544

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.91  E-value=6.4e-05  Score=68.53  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCc-eecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSE-IINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~e-IIs~Ds~   94 (343)
                      +.+++|.|++||||||++..|+..++ .. +++.|.+
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~-~~~~~~~D~~   38 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRA-IDIVLSGDYL   38 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC-CeEEehhHHH
Confidence            56999999999999999999999987 44 4444433

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.89  E-value=7.4e-05  Score=69.31  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+|+|.||+||||||+++.|++.++ ..+++.|.+  |+.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~-~~~~~~~~~--~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG-FHYLDTGAM--YRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC-CCcccCchh--HHH
Confidence            46899999999999999999999999 888999987  664

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.88  E-value=2e-05  Score=70.62  Aligned_cols=59  Identities=27%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             cCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           30 LHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ......-.+|+++++.+          .+++-++|+||||||||||+..||+.-.+.    ++.+. .-|.+..
T Consensus        17 g~~~~~l~IL~~V~L~v----------~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s----sGeV~-l~G~~L~   75 (228)
T COG4181          17 GQGEGELSILKGVELVV----------KRGETVAIVGPSGSGKSTLLAVLAGLDDPS----SGEVR-LLGQPLH   75 (228)
T ss_pred             cCCCcceeEeecceEEe----------cCCceEEEEcCCCCcHHhHHHHHhcCCCCC----CceEE-EcCcchh
Confidence            34444456899999998          899999999999999999999999987643    67773 5566654

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.88  E-value=3.1e-06  Score=77.32  Aligned_cols=86  Identities=20%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccc
Q 019312           35 RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHN  114 (343)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~  114 (343)
                      .+.+.+++++.+          .+|++++++||||+||||.-.++.+...|.    +|++ ..++.||+....-...+.|
T Consensus        16 kr~Vv~~Vsl~v----------~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d----~G~i-~ld~~diT~lPm~~RArlG   80 (243)
T COG1137          16 KRKVVNDVSLEV----------NSGEIVGLLGPNGAGKTTTFYMIVGLVRPD----SGKI-LLDDEDITKLPMHKRARLG   80 (243)
T ss_pred             CeeeeeeeeEEE----------cCCcEEEEECCCCCCceeEEEEEEEEEecC----CceE-EECCcccccCChHHHhhcC
Confidence            455889999998          899999999999999999988888887754    7888 5889999865444444455


Q ss_pred             cCccccccccCCCcccChhhhhh
Q 019312          115 VPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus       115 i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      +-| |-+.-+... .+|+.+-..
T Consensus        81 igY-LpQE~SIFr-~LtV~dNi~  101 (243)
T COG1137          81 IGY-LPQEASIFR-KLTVEDNIM  101 (243)
T ss_pred             ccc-ccccchHhh-cCcHHHHHH
Confidence            533 333334444 455554443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.88  E-value=1.2e-05  Score=66.48  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      +++++++.+          .++++++|+||||||||||+..+.
T Consensus         4 aL~~vsl~i----------~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           4 SLHGVLVDV----------YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEeeEEEE----------cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            678888887          788999999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.86  E-value=6.5e-05  Score=80.09  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ..+|+|.||+||||||+++.||+.++ .++++.|.+  |+.+
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~-~~~~~~~~~--~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALG-YHYLDSGAL--YRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhC-CeEecHHHh--hhHH
Confidence            45899999999999999999999999 999999988  8876

>TIGR00235 udk uridine kinase

Probab=97.85  E-value=1.3e-05  Score=72.84  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~   94 (343)
                      +++.+++|+||||||||||++.|++.++.  ..+++.|..
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            56889999999999999999999998862  345666665

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.85  E-value=1.9e-05  Score=92.70  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=59.4

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +.-+++.+++..|......+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I----------~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt----sG~I-~i~ 1999 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGV----------RPGECFGLLGVNGAGKTTTFKMLTGDTTVT----SGDA-TVA 1999 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEE----------cCCcEEEEECCCCCcHHHHHHHHhCCCCCC----ccEE-EEC
Confidence            4457888999888653344899999998          899999999999999999999999998754    7888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++.+
T Consensus      2000 G~~i~~ 2005 (2272)
T TIGR01257      2000 GKSILT 2005 (2272)
T ss_pred             CEECcc
Confidence            888753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.85  E-value=8.1e-05  Score=67.26  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=26.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++.+++|+|++|||||||++.|++.+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36788999999999999999999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=97.84  E-value=1.6e-05  Score=83.58  Aligned_cols=59  Identities=14%  Similarity=0.039  Sum_probs=47.9

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-+++.++++.|...   .++.+++++          .+|++++|+||||||||||++.|++.+.|.    .|++.
T Consensus       339 ~~l~~~~ls~~~~~~---~l~~~s~~i----------~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~----~G~I~  397 (590)
T PRK13409        339 TLVEYPDLTKKLGDF---SLEVEGGEI----------YEGEVIGIVGPNGIGKTTFAKLLAGVLKPD----EGEVD  397 (590)
T ss_pred             eEEEEcceEEEECCE---EEEecceEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence            347888888877532   377888887          889999999999999999999999998754    56663

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.84  E-value=6.2e-06  Score=75.12  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec-c
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG-L  100 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g-l  100 (343)
                      +.+.+++-....+.  +++++++++          .+|.+-+|+||||+||||++-.+.+..+|.    .|+++ |.| .
T Consensus         6 L~~~~vsVsF~GF~--Aln~ls~~v----------~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~----~G~v~-f~g~~   68 (249)
T COG4674           6 LYLDGVSVSFGGFK--ALNDLSFSV----------DPGELRVLIGPNGAGKTTLMDVITGKTRPQ----EGEVL-FDGDT   68 (249)
T ss_pred             EEEeceEEEEccee--eeeeeEEEe----------cCCeEEEEECCCCCCceeeeeeecccCCCC----cceEE-EcCch
Confidence            34444443333332  588999998          899999999999999999999999998865    69996 555 8


Q ss_pred             cccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312          101 DITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD  140 (343)
Q Consensus       101 ~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~  140 (343)
                      |+....--.-.+.||-..| ..-...+ ..++.+-.+.|.
T Consensus        69 dl~~~~e~~IAr~GIGRKF-Q~PtVfe-~ltV~eNLelA~  106 (249)
T COG4674          69 DLTKLPEHRIARAGIGRKF-QKPTVFE-NLTVRENLELAL  106 (249)
T ss_pred             hhccCCHHHHHHhccCccc-cCCeehh-hccHHHHHHHHh
Confidence            8864332222344554432 2223334 566666655553

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.83  E-value=3.4e-05  Score=67.39  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ...+-|.|.|..|+|||||+..||..++ .+.|+.+.+
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~-~~~i~isd~   41 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTG-LEYIEISDL   41 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhC-CceEehhhH
Confidence            3456788999999999999999999998 777776655

>PRK13808 adenylate kinase; Provisional

Probab=97.83  E-value=2.7e-05  Score=76.35  Aligned_cols=33  Identities=18%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||+||||||++..|++.++ ..+||.|.+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~yg-l~~is~gdl   34 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYG-IVQLSTGDM   34 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CceecccHH
Confidence            378999999999999999999998 889999888

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.81  E-value=2.6e-05  Score=69.43  Aligned_cols=91  Identities=20%  Similarity=0.281  Sum_probs=59.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccc-cccCccccccccCCCccc-Chhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKR-HNVPHHLLGEFVPDDVEF-TPDDFRL  137 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~-~~i~h~li~~~~~~~~~~-s~~~f~~  137 (343)
                      .+++|+|++|||||++|..++..++ ..      + +|    |.|+++..+|+ .+++||...-  +.  .| +...+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~-~~------~-~~----iat~~~~~~e~~~ri~~h~~~R--~~--~w~t~E~~~~   65 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSG-LQ------V-LY----IATAQPFDDEMAARIAHHRQRR--PA--HWQTVEEPLD   65 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcC-CC------c-Ee----CcCCCCChHHHHHHHHHHHhcC--CC--CCeEeccccc
Confidence            4789999999999999999998865 22      1 23    66777877665 5788886543  22  23 3333332


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHh
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLV  168 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~  168 (343)
                       ..+.+......+. .|++.+...|+..++.
T Consensus        66 -l~~~i~~~~~~~~-~VlID~Lt~~~~n~l~   94 (170)
T PRK05800         66 -LAELLRADAAPGR-CVLVDCLTTWVTNLLF   94 (170)
T ss_pred             -HHHHHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence             3334555333444 5888888888776664

>PLN03211 ABC transporter G-25; Provisional

Probab=97.81  E-value=2e-05  Score=83.94  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=45.0

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..+|+++++++          .+|++++|+||||||||||++.|++...+..  ..|++ .+.|.++.
T Consensus        81 ~~iL~~vs~~i----------~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~--~sG~I-~inG~~~~  135 (659)
T PLN03211         81 RTILNGVTGMA----------SPGEILAVLGPSGSGKSTLLNALAGRIQGNN--FTGTI-LANNRKPT  135 (659)
T ss_pred             CeeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCCc--eeEEE-EECCEECc
Confidence            34889999998          8999999999999999999999999876421  25777 47787763

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.81  E-value=6.5e-05  Score=67.26  Aligned_cols=27  Identities=26%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+|+|.|+.||||||++..|++.+.
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~   28 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLE   28 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367999999999999999999999875

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.81  E-value=2.5e-05  Score=71.14  Aligned_cols=38  Identities=34%  Similarity=0.495  Sum_probs=35.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      --+|+|.|.|-|||||||+.|.+.|+.+.+|+.|..  |+
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yK   41 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YK   41 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cC
Confidence            358999999999999999999999998999999999  76

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=97.81  E-value=3.9e-05  Score=79.18  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=61.7

Q ss_pred             cCCCCCCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312            7 SPPTPACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      ++|....--.|.|--+++..|++.-|+..+-...++++.+          +.|.-+.|+||||||||+|.+.|++..+-.
T Consensus       419 ~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V----------~~g~~LLItG~sG~GKtSLlRvlggLWp~~  488 (659)
T KOG0060|consen  419 SLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEV----------PSGQNLLITGPSGCGKTSLLRVLGGLWPST  488 (659)
T ss_pred             CCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEe----------cCCCeEEEECCCCCchhHHHHHHhcccccC
Confidence            3444455566888999999999999997555667799997          889999999999999999999999998732


Q ss_pred             ceecCCceE
Q 019312           87 EIINSDKMQ   95 (343)
Q Consensus        87 eIIs~Ds~q   95 (343)
                          .|+++
T Consensus       489 ----~G~l~  493 (659)
T KOG0060|consen  489 ----GGKLT  493 (659)
T ss_pred             ----CCeEE
Confidence                56664

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.78  E-value=0.00019  Score=62.18  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=22.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++|+|++||||||+++.|++.+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999883

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK14528 adenylate kinase; Provisional

Probab=97.76  E-value=4.3e-05  Score=68.62  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.++|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~-~~~is~~~~   35 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS-IPQISTGDI   35 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC-CCeeeCCHH
Confidence            4688999999999999999999998 889999988

>PTZ00301 uridine kinase; Provisional

Probab=97.76  E-value=2.6e-05  Score=71.76  Aligned_cols=38  Identities=34%  Similarity=0.648  Sum_probs=29.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC----C--CceecCCceEEEec
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF----P--SEIINSDKMQVYKG   99 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~----~--~eIIs~Ds~qvy~g   99 (343)
                      .+|+|.|||||||||||..|++.+.    +  ..+++.|..  |+.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y--y~~   47 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRD   47 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC--ccC
Confidence            6899999999999999998876652    1  236777877  653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.75  E-value=4.5e-05  Score=88.02  Aligned_cols=44  Identities=27%  Similarity=0.467  Sum_probs=38.7

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +|+++++++          ++|++++|+||||||||||++.|++.+++.    .|++.
T Consensus       441 ~l~~i~l~i----------~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~----~G~i~  484 (1490)
T TIGR01271       441 VLKNISFKL----------EKGQLLAVAGSTGSGKSSLLMMIMGELEPS----EGKIK  484 (1490)
T ss_pred             ceeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceEE
Confidence            788999997          899999999999999999999999998754    56663

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.74  E-value=3.4e-05  Score=71.34  Aligned_cols=53  Identities=25%  Similarity=0.471  Sum_probs=46.5

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..+++++++.+          .++.++.|+|-||+|||||+..+++.+.+.    +|.+ ...|.||+
T Consensus        19 k~~l~~~sL~I----------~~g~FvtViGsNGAGKSTlln~iaG~l~~t----~G~I-~Idg~dVt   71 (263)
T COG1101          19 KRALNGLSLEI----------AEGDFVTVIGSNGAGKSTLLNAIAGDLKPT----SGQI-LIDGVDVT   71 (263)
T ss_pred             HHHHhcCceee----------cCCceEEEEcCCCccHHHHHHHhhCccccC----CceE-EECceecc
Confidence            44899999998          899999999999999999999999998754    7777 57888885

>PLN02348 phosphoribulokinase

Probab=97.74  E-value=5.6e-05  Score=75.52  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++-+|+|.|++|||||||++.|+..++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999999986

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.73  E-value=3.6e-05  Score=69.22  Aligned_cols=44  Identities=23%  Similarity=0.410  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      +...|.++-++||||+|||||...+|+.++ +    +|++| +.|.++..
T Consensus        21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~----sGsi~-~~G~~l~~   64 (248)
T COG4138          21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS-G----SGSIQ-FAGQPLEA   64 (248)
T ss_pred             ccccceEEEEECCCCccHHHHHHHHhCCCC-C----CceEE-ECCcchhH
Confidence            446799999999999999999999999998 6    79996 88988753

>PRK13409 putative ATPase RIL; Provisional

Probab=97.73  E-value=2.3e-05  Score=82.44  Aligned_cols=52  Identities=17%  Similarity=0.166  Sum_probs=39.1

Q ss_pred             cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           27 SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++.+|... .-+|++++ +.          .+|++++|+||||||||||++.|++.+.|.    .|.+
T Consensus        79 ~~~~yg~~-~~~L~~l~-~i----------~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~----~G~i  130 (590)
T PRK13409         79 PVHRYGVN-GFKLYGLP-IP----------KEGKVTGILGPNGIGKTTAVKILSGELIPN----LGDY  130 (590)
T ss_pred             ceEEecCC-ceeEecCC-cC----------CCCCEEEEECCCCCCHHHHHHHHhCCccCC----Cccc
Confidence            44455421 12677776 44          889999999999999999999999998753    4555

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.73  E-value=4.3e-05  Score=69.17  Aligned_cols=48  Identities=23%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      +.+.++++.          .++..++|+|.||||||||++.|++..+|.    +|.+ .+.|.
T Consensus        28 AV~~vSFtL----------~~~QTlaiIG~NGSGKSTLakMlaGmi~PT----sG~i-l~n~~   75 (267)
T COG4167          28 AVKPVSFTL----------REGQTLAIIGENGSGKSTLAKMLAGMIEPT----SGEI-LINDH   75 (267)
T ss_pred             cccceEEEe----------cCCcEEEEEccCCCcHhHHHHHHhcccCCC----CceE-EECCc
Confidence            567888887          889999999999999999999999999875    5655 34443

>PRK02496 adk adenylate kinase; Provisional

Probab=97.73  E-value=3.7e-05  Score=68.32  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~   35 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDI   35 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHH
Confidence            588999999999999999999998 888888877

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.72  E-value=5.8e-05  Score=68.25  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|+.||||||++..|+. ++ ..+|++|.+
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g-~~~i~~D~~   35 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LG-APVIDADAI   35 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cC-CEEEEecHH
Confidence            5799999999999999999998 77 899999988

>PLN03140 ABC transporter G family member; Provisional

Probab=97.72  E-value=3.4e-05  Score=88.63  Aligned_cols=69  Identities=23%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             ceeecccCCcCCc-----------ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           21 HYSSFYSPFLHPK-----------RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        21 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ++++.+|++..+.           ++..+|+++++.+          .+|++++|+||||||||||++.|++...++. +
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i----------~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~-~  935 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF----------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-I  935 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE----------ECCeEEEEECCCCCCHHHHHHHHcCCCCCCc-c
Confidence            6778888877643           2234788999997          8999999999999999999999999875332 2


Q ss_pred             cCCceEEEecccc
Q 019312           90 NSDKMQVYKGLDI  102 (343)
Q Consensus        90 s~Ds~qvy~gl~I  102 (343)
                       .|.+. +.|.++
T Consensus       936 -~G~I~-inG~~~  946 (1470)
T PLN03140        936 -EGDIR-ISGFPK  946 (1470)
T ss_pred             -cceEE-ECCccC
Confidence             47773 777664

>TIGR00152 dephospho-CoA kinase

Probab=97.72  E-value=3e-05  Score=69.41  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=30.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+|..||||||++..|+...+ ..+|++|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~-~~~i~~D~~   33 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYH-FPVIDADKI   33 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC-CeEEeCCHH
Confidence            489999999999999999999876 889999988

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.72  E-value=0.00036  Score=62.01  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++.+++|+|++||||||+++.|++.+.
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999999874

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.71  E-value=2.8e-05  Score=65.67  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      +|+|+|++||||||+++.|++.++ .++++.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~-~~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG-LPYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC-Cceeccc
Confidence            589999999999999999999998 8888887

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.69  E-value=4.1e-05  Score=80.91  Aligned_cols=59  Identities=25%  Similarity=0.410  Sum_probs=46.5

Q ss_pred             cccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           33 KRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+...+|+++++.+          ++|++++|+||+|||||||++.|++...+. ....|++ .+.|.++.
T Consensus        35 ~~~~~iL~~vs~~i----------~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~-~~~~G~i-~~~g~~~~   93 (617)
T TIGR00955        35 RPRKHLLKNVSGVA----------KPGELLAVMGSSGAGKTTLMNALAFRSPKG-VKGSGSV-LLNGMPID   93 (617)
T ss_pred             cCccccccCCEEEE----------eCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECCEECC
Confidence            33455899999998          899999999999999999999999987632 1124667 47787663

>TIGR00767 rho transcription termination factor Rho

Probab=97.68  E-value=6.4e-05  Score=75.40  Aligned_cols=55  Identities=18%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             ccceeecccCCcCCcccccccc-----------cceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWR-----------KTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...+.|.+++|.||..+. +|.           ++.+.+          .+|+.++|+||+|+|||||+..+++.+.
T Consensus       128 ~~ri~Fe~LTf~YP~er~-~Le~~~~~~~~R~id~~~pi----------g~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       128 KNRVLFENLTPLYPNERL-RLETSTEDLSTRVLDLFAPI----------GKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCCeEEEEeeecCCCccc-eeecCccccceeeeeeEEEe----------CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            467999999999998763 563           444444          8999999999999999999999999865

Members of this family differ in the specificity of RNA binding.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.67  E-value=0.00017  Score=75.67  Aligned_cols=28  Identities=29%  Similarity=0.479  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|++||||||+++.|++.+.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence            5678999999999999999999999987

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.66  E-value=6.9e-05  Score=67.69  Aligned_cols=64  Identities=16%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++..++.=+|-  .-.+|++++++.          .+|.+|.|+|.|||||||+++++.-.-.|.    +|.+ ...|..
T Consensus         7 l~v~dlHK~~G--~~eVLKGvSL~A----------~~GdVisIIGsSGSGKSTfLRCiN~LE~P~----~G~I-~v~gee   69 (256)
T COG4598           7 LEVEDLHKRYG--EHEVLKGVSLQA----------NAGDVISIIGSSGSGKSTFLRCINFLEKPS----AGSI-RVNGEE   69 (256)
T ss_pred             eehhHHHhhcc--cchhhcceeeec----------CCCCEEEEecCCCCchhHHHHHHHhhcCCC----CceE-EECCeE
Confidence            34444444444  345899999998          899999999999999999999998776654    5666 344544


Q ss_pred             c
Q 019312          102 I  102 (343)
Q Consensus       102 I  102 (343)
                      |
T Consensus        70 i   70 (256)
T COG4598          70 I   70 (256)
T ss_pred             E
Confidence            4

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.64  E-value=3.4e-05  Score=69.24  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||+||||||+|+.|++.++ ...||.|.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~   34 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDI   34 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHH
Confidence            578999999999999999999988 888888887

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.63  E-value=5.7e-05  Score=70.99  Aligned_cols=66  Identities=9%  Similarity=0.118  Sum_probs=53.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+=.+..  ..+++++++.+          ++|++++++||||+||||..+.+.+.+.|.    .|.+. ++|-+
T Consensus         3 L~ie~vtK~Fg~--k~av~~isf~v----------~~G~i~GllG~NGAGKTTtfRmILglle~~----~G~I~-~~g~~   65 (300)
T COG4152           3 LEIEGVTKSFGD--KKAVDNISFEV----------PPGEIFGLLGPNGAGKTTTFRMILGLLEPT----EGEIT-WNGGP   65 (300)
T ss_pred             eEEecchhccCc--eeeecceeeee----------cCCeEEEeecCCCCCccchHHHHhccCCcc----CceEE-EcCcc
Confidence            456666555543  34689999998          899999999999999999999999999865    68885 78877


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (300)
T COG4152          66 LSQ   68 (300)
T ss_pred             hhh
Confidence            754

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.63  E-value=5.2e-05  Score=77.38  Aligned_cols=51  Identities=16%  Similarity=0.127  Sum_probs=39.5

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      +|+++++++          .+|++++|+||||||||||++  +....+.   +.+.+ .+.|.++..
T Consensus        21 vL~~Vsl~i----------~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I-~ldg~~~~~   71 (504)
T TIGR03238        21 ILVKFNKEL----------PSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEF-FLDATHSFS   71 (504)
T ss_pred             HHhCCceee----------cCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEE-EECCEECCC
Confidence            688999997          889999999999999999999  3333322   23357 478888864

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.63  E-value=7.6e-05  Score=66.87  Aligned_cols=56  Identities=23%  Similarity=0.429  Sum_probs=45.0

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec----ccccCCCC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG----LDITTNKI  107 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g----l~I~T~kp  107 (343)
                      ++++++++++          +.|+.+++-||||+|||||++.|...+.+.    .|++. .+.    +|+.++.|
T Consensus        25 pV~~~vslsV----------~aGECvvL~G~SG~GKStllr~LYaNY~~d----~G~I~-v~H~g~~vdl~~a~p   84 (235)
T COG4778          25 PVLRNVSLSV----------NAGECVVLHGPSGSGKSTLLRSLYANYLPD----EGQIL-VRHEGEWVDLVTAEP   84 (235)
T ss_pred             eeeeceeEEe----------cCccEEEeeCCCCCcHHHHHHHHHhccCCC----CceEE-EEeCcchhhhhccCh
Confidence            3889999998          889999999999999999999999887644    67775 333    25555554

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.63  E-value=0.00019  Score=66.69  Aligned_cols=127  Identities=19%  Similarity=0.226  Sum_probs=79.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc--cCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI--TTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I--~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .+.++|.||+|+||+|++..|...++ +      ..    ++.+  +|..|...|..+..||+.+.-+... ...-..|+
T Consensus        37 ~~~ivl~gpsg~gk~tll~~l~ee~~-~------~~----~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s-~i~~~~fi  104 (231)
T KOG0707|consen   37 FKPIVLSGPSGVGKSTLLKRLREELG-G------MF----GFSVSHTTRTPRAGEVHGKHYHFSTTEEFLS-MIKNNEFI  104 (231)
T ss_pred             CceEEEeCCCCcchhHHHHHHHHHcC-C------cc----eEEecCCCCCCCcccccCCcceeccHHHHHH-Hhhhhhhh
Confidence            47899999999999999999999987 3      11    4433  5667888888999999877655554 44445555


Q ss_pred             hhhh----------HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEE-eCCHH
Q 019312          137 LQAD----------NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWV-DSSLQ  205 (343)
Q Consensus       137 ~~a~----------~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L-~~~re  205 (343)
                      +.+.          .+++++...|+..|+-                    +...+  ..++.. ...+.+++++ +++-.
T Consensus       105 E~a~~~gn~yGtsi~av~~~~~~gk~~ild--------------------Id~qg--~~~i~~-~~~~~i~i~~~pps~~  161 (231)
T KOG0707|consen  105 EFATFSGNKYGTSIAAVQRLMLSGKVCILD--------------------IDLQG--VQPIRA-TSLDAIYIFIKPPSIK  161 (231)
T ss_pred             hhhhhhcccCCchHHHHHHHHhcCCcceee--------------------hhhcC--ceeeec-CCCceEEEEecCCcch
Confidence            4432          3444444444433221                    11110  011111 1345555554 57789


Q ss_pred             HHHHHHHHHHHHHHh
Q 019312          206 LLYDYLNKRVDDMLE  220 (343)
Q Consensus       206 ~L~~RI~~Rv~~Ml~  220 (343)
                      .+.+|+.+|.-+|-.
T Consensus       162 ~~e~rl~~rgte~~~  176 (231)
T KOG0707|consen  162 ILEERLRARGTETEE  176 (231)
T ss_pred             hHHHHhhccCcchHH
Confidence            999999999766653

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.0012  Score=58.66  Aligned_cols=116  Identities=19%  Similarity=0.314  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      .|.+|+||||||+||-||+-.....+. ..    ..+.+.+  .+.|....   -.+-.|.-          .+..+|..
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~-~~----~r~~fvr--RvITRpa~---ag~EdH~a----------vs~~eF~~   63 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLA-GR----PRLHFVR--RVITRPAD---AGGEDHDA----------LSEAEFNT   63 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhc-cC----CceEEEE--EEecccCC---CCcccccc----------cCHHHHHH
Confidence            589999999999999999988887776 31    1232221  22222111   11123322          22333332


Q ss_pred             hhh------------------HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCC-ceEEE
Q 019312          138 QAD------------------NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRY-NCCFL  198 (343)
Q Consensus       138 ~a~------------------~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~-~~~~i  198 (343)
                      .+.                  ..|.+-.++|- .+|+-||--|+-..-                       .+| +..++
T Consensus        64 ~a~~g~FAlsWqAhGL~Ygip~eId~wl~~G~-vvl~NgSRa~Lp~ar-----------------------rry~~Llvv  119 (192)
T COG3709          64 RAGQGAFALSWQAHGLSYGIPAEIDLWLAAGD-VVLVNGSRAVLPQAR-----------------------RRYPQLLVV  119 (192)
T ss_pred             HhhcCceeEEehhcCccccCchhHHHHHhCCC-EEEEeccHhhhHHHH-----------------------HhhhcceeE
Confidence            221                  23555555666 467777765532221                       123 34567


Q ss_pred             EEeCCHHHHHHHHHHHHHH
Q 019312          199 WVDSSLQLLYDYLNKRVDD  217 (343)
Q Consensus       199 ~L~~~re~L~~RI~~Rv~~  217 (343)
                      .+..+.++|.+|+..|-.+
T Consensus       120 ~ita~p~VLaqRL~~RGRE  138 (192)
T COG3709         120 CITASPEVLAQRLAERGRE  138 (192)
T ss_pred             EEecCHHHHHHHHHHhccC
Confidence            8889999999999999754

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.62  E-value=8.6e-05  Score=67.89  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||+++.||+.++ ..+||.|.+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~-~~~is~~dl   34 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG-IPHISTGDM   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEECCcc
Confidence            488999999999999999999999 899998877

>PRK07429 phosphoribulokinase; Provisional

Probab=97.61  E-value=0.00011  Score=71.97  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC--CceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP--SEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~--~eIIs~Ds~   94 (343)
                      .+.-+|+|+|++||||||+++.|++.+++  ..+|+.|.+
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            45679999999999999999999999873  235556654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.61  E-value=4.2e-05  Score=70.73  Aligned_cols=31  Identities=35%  Similarity=0.603  Sum_probs=28.3

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~   77 (343)
                      .+++++++++          .+|++++|+||||||||||+.
T Consensus         9 ~~l~~vsl~i----------~~Ge~~~l~G~sGsGKSTL~~   39 (226)
T cd03270           9 HNLKNVDVDI----------PRNKLVVITGVSGSGKSSLAF   39 (226)
T ss_pred             hccccceeec----------CCCcEEEEEcCCCCCHHHHHH
Confidence            3789999997          899999999999999999973

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.60  E-value=8.2e-05  Score=66.91  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .+++-.|.  ....++++++..          .+|++++|+|.+|||||||..+|+..+.|.    ++.+ .|+-
T Consensus        10 ~~lsk~Yg--~~~gc~~vsF~l----------~PGeVLgiVGESGSGKtTLL~~is~rl~p~----~G~v-~Y~~   67 (258)
T COG4107          10 SGLSKLYG--PGKGCRDVSFDL----------YPGEVLGIVGESGSGKTTLLKCISGRLTPD----AGTV-TYRM   67 (258)
T ss_pred             hhhhhhhC--CCcCccccceee----------cCCcEEEEEecCCCcHHhHHHHHhcccCCC----CCeE-EEEc
Confidence            34444444  234688999997          999999999999999999999999999865    6777 4764

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.60  E-value=0.00019  Score=64.22  Aligned_cols=127  Identities=15%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCc--eecCCceEEEecccccCCCCCcccccccCccccccc-cCCCccc--Chh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSE--IINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEF-VPDDVEF--TPD  133 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~e--IIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~-~~~~~~~--s~~  133 (343)
                      +++|+|-|+|.||||||++.|...++ .+  .++.|++  ++.++-....           +..+.. .++....  ...
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f--~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~   66 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTF--VDMMPPGRYR-----------PGDGLEPAGDRPDGGPLFR   66 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHH--HHHS-GGGGT-----------STTSEEEETTSEEE-HHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChH--HhhcCccccc-----------CCccccccccCCchhHHHH
Confidence            47899999999999999999999987 32  3444444  2212111000           000100 0000000  111


Q ss_pred             hhhhhhhHHHHHHHhcCCeeEEEcCch---hhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312          134 DFRLQADNAISDIISRKKTPLLVGGSN---SFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY  210 (343)
Q Consensus       134 ~f~~~a~~~i~~i~~~g~~pIlvGGT~---lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R  210 (343)
                      .+.......|....+.|.. ||+.+--   ..++..+..       .+            ..+++.++++.||.++|.+|
T Consensus        67 ~~~~~~~~~iaa~a~aG~~-VIvD~v~~~~~~l~d~l~~-------~L------------~~~~vl~VgV~Cpleil~~R  126 (174)
T PF07931_consen   67 RLYAAMHAAIAAMARAGNN-VIVDDVFLGPRWLQDCLRR-------LL------------AGLPVLFVGVRCPLEILERR  126 (174)
T ss_dssp             HHHHHHHHHHHHHHHTT-E-EEEEE--TTTHHHHHHHHH-------HH------------TTS-EEEEEEE--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCC-EEEecCccCcHHHHHHHHH-------Hh------------CCCceEEEEEECCHHHHHHH
Confidence            2223334566666666664 4544210   001111100       00            14678999999999999999


Q ss_pred             HHHHHHHHH
Q 019312          211 LNKRVDDML  219 (343)
Q Consensus       211 I~~Rv~~Ml  219 (343)
                      =..|-|+..
T Consensus       127 E~~RgDR~~  135 (174)
T PF07931_consen  127 ERARGDRPI  135 (174)
T ss_dssp             HHHHTSSST
T ss_pred             HHhcCCcch
Confidence            999998643

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.59  E-value=0.00015  Score=72.56  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=57.3

Q ss_pred             cCCCCCCCCCCCccceee--cccCCcCCccc---------ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHH
Q 019312            7 SPPTPACYHHQQQQHYSS--FYSPFLHPKRR---------RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGL   75 (343)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStl   75 (343)
                      +-|..++++.|.++.+-+  .++.-.||...         -.+.++++++.          .+|+.++|+|.||||||||
T Consensus       260 aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L----------~~gqTlGlVGESGSGKsTl  329 (534)
T COG4172         260 AEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL----------RRGQTLGLVGESGSGKSTL  329 (534)
T ss_pred             cCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEe----------cCCCeEEEEecCCCCcchH
Confidence            445555566666544333  34443333331         12456777776          8899999999999999999


Q ss_pred             HHHHHhhcCCCceecCCceEEEecccccC
Q 019312           76 SIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        76 a~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      .++|.+.++ .    .|.+ .|.|.+|..
T Consensus       330 G~allrL~~-s----~G~I-~F~G~~i~~  352 (534)
T COG4172         330 GLALLRLIP-S----QGEI-RFDGQDIDG  352 (534)
T ss_pred             HHHHHhhcC-c----CceE-EECCccccc
Confidence            999999998 3    5777 599998864

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.55  E-value=0.00028  Score=62.27  Aligned_cols=25  Identities=36%  Similarity=0.453  Sum_probs=23.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|+|.|+.||||||+++.|++.+.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999985

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.54  E-value=0.00012  Score=76.58  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+|+|.||||||||||++.|++.++...+|+.|..
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            469999999999999999999999864567777775

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.53  E-value=8.3e-05  Score=85.31  Aligned_cols=57  Identities=21%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..+|+++++.+          .+|++++|+||||||||||++.|++...+......|++ .|.|.++.
T Consensus        74 ~~iL~~vs~~i----------~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I-~~~G~~~~  130 (1394)
T TIGR00956        74 FDILKPMDGLI----------KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI-TYDGITPE  130 (1394)
T ss_pred             ceeeeCCEEEE----------ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE-EECCEehH
Confidence            34788888887          89999999999999999999999998631111236888 48888774

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.53  E-value=0.00051  Score=60.51  Aligned_cols=26  Identities=31%  Similarity=0.595  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      |.+|-|+|.+||||||||..|.+.+.
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~   27 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLF   27 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999885

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.52  E-value=0.00014  Score=76.11  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=52.4

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      +..+++.+++...|.+. ..++..++.+          ++|.-+.|.|+||||||||.++||+.-|-+
T Consensus       390 ~~~i~~~nl~l~~p~~~-~ll~~l~~~v----------~~G~~llI~G~SG~GKTsLlRaiaGLWP~g  446 (604)
T COG4178         390 DHGITLENLSLRTPDGQ-TLLSELNFEV----------RPGERLLITGESGAGKTSLLRALAGLWPWG  446 (604)
T ss_pred             cceeEEeeeeEECCCCC-eeeccceeee----------CCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence            68999999999999988 4889999997          899999999999999999999999998843

>PRK14526 adenylate kinase; Provisional

Probab=97.52  E-value=0.00026  Score=65.20  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++|+||.||||||++..|++.++ ...||.|.+ +..++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~-~~~is~G~l-lr~~~   39 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELN-YYHISTGDL-FRENI   39 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CceeecChH-HHHhc
Confidence            77999999999999999999998 888999988 34444

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.51  E-value=8.5e-05  Score=70.80  Aligned_cols=49  Identities=29%  Similarity=0.400  Sum_probs=40.5

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +..++++.+          ++|.+++++||||+||||+++.|.+.+.|.    +|.+. ..|.+
T Consensus        39 AVqdisf~I----------P~G~ivgflGaNGAGKSTtLKmLTGll~p~----~G~v~-V~G~~   87 (325)
T COG4586          39 AVQDISFEI----------PKGEIVGFLGANGAGKSTTLKMLTGLLLPT----SGKVR-VNGKD   87 (325)
T ss_pred             hhheeeeec----------CCCcEEEEEcCCCCcchhhHHHHhCccccC----CCeEE-ecCcC
Confidence            567888886          899999999999999999999999998765    67774 44543

>PLN03140 ABC transporter G family member; Provisional

Probab=97.51  E-value=8.2e-05  Score=85.62  Aligned_cols=58  Identities=21%  Similarity=0.387  Sum_probs=46.9

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCC
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTN  105 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~  105 (343)
                      ..+|+++++.+          ++|++++|+||||||||||++.|++.+++. .-..|++ .|.|.++...
T Consensus       178 ~~IL~~vs~~i----------~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~-~~~~G~I-~~nG~~~~~~  235 (1470)
T PLN03140        178 LTILKDASGII----------KPSRMTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGEI-TYNGYRLNEF  235 (1470)
T ss_pred             ceeccCCeEEE----------eCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-CcceeEE-EECCEechhh
Confidence            34788888887          899999999999999999999999998742 1125778 4888887543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.50  E-value=0.00062  Score=73.25  Aligned_cols=39  Identities=31%  Similarity=0.441  Sum_probs=35.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      .+|+|.||+||||||+++.||+.++ ...++.|.+  |+.+.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~-~~~~~~g~~--~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLG-YAYLDTGAM--YRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-CcEeecCcE--eHHHH
Confidence            3789999999999999999999999 899999998  88765

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.00018  Score=81.51  Aligned_cols=68  Identities=19%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CCccceeecccCCcCCc-ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPK-RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +.+..+++.+.+|.... ..+..|+++++.+          ++|++++|+||+|||||+|+.++.+.++..    .|++.
T Consensus       514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i----------~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~----sG~v~  579 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSESPEPTLKDINFEI----------KKGQLVAVVGPVGSGKSSLLSAILGEMPKL----SGSVA  579 (1381)
T ss_pred             CCCceEEEeeeeEecCCCCCcccccceeEEe----------cCCCEEEEECCCCCCHHHHHHHHhcCcccc----cceEE
Confidence            44567889999998765 3344999999998          999999999999999999999999998843    56665


Q ss_pred             EEe
Q 019312           96 VYK   98 (343)
Q Consensus        96 vy~   98 (343)
                      +..
T Consensus       580 v~g  582 (1381)
T KOG0054|consen  580 VNG  582 (1381)
T ss_pred             EcC
Confidence            443

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.00013  Score=77.23  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             CCCccceeecccCCcCCcc---cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           16 HQQQQHYSSFYSPFLHPKR---RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      ......+.+.+++...+..   ....|++++-..          .+|++.+|+||+|||||||+..||+..+.+-.+ .|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~----------~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~-~G   88 (613)
T KOG0061|consen   20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTA----------KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKL-SG   88 (613)
T ss_pred             ccccceeEEEEEEEEecCCCCccceeeeCcEEEE----------ecCeEEEEECCCCCCHHHHHHHHhccccCCCcc-eE
Confidence            3334555666666666555   356889999887          889999999999999999999999998732111 45


Q ss_pred             ceEEEec
Q 019312           93 KMQVYKG   99 (343)
Q Consensus        93 s~qvy~g   99 (343)
                      ++ .+.|
T Consensus        89 ~i-lvNG   94 (613)
T KOG0061|consen   89 EI-LLNG   94 (613)
T ss_pred             EE-EECC
Confidence            55 3555

>PRK07667 uridine kinase; Provisional

Probab=97.47  E-value=0.00016  Score=65.25  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~   94 (343)
                      ..+|+|.|++||||||++..|+..+.    +..+++.|..
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            47999999999999999999999874    2447777776

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.47  E-value=0.00023  Score=71.19  Aligned_cols=88  Identities=13%  Similarity=0.228  Sum_probs=68.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~g   99 (343)
                      ++.-..|.|....+...+++++++.+          ..|+.++|+|.||||||-.+..+.+.++. +.+--++++ .|.|
T Consensus         8 ~v~nLsV~f~~~~~~~~aVk~isf~i----------~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i-~f~G   76 (534)
T COG4172           8 SIRNLSVAFHQEGGTVEAVKGISFDI----------EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI-LFDG   76 (534)
T ss_pred             eeeccEEEEecCCcceEeeccceeee----------cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee-EEcC
Confidence            34556788888888888999999998          99999999999999999999999999972 234446788 5999


Q ss_pred             ccccCCCCCcccccccCccccc
Q 019312          100 LDITTNKIPSHKRHNVPHHLLG  121 (343)
Q Consensus       100 l~I~T~kp~~~e~~~i~h~li~  121 (343)
                      .|+....  +.++.++...-++
T Consensus        77 ~dll~~s--e~~lr~iRG~~I~   96 (534)
T COG4172          77 EDLLAAS--ERQLRGVRGNKIG   96 (534)
T ss_pred             hhhhcCC--HHHHhhhcccceE
Confidence            9987543  4556666544443

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.47  E-value=0.00057  Score=69.78  Aligned_cols=43  Identities=33%  Similarity=0.482  Sum_probs=35.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce-EEEecc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM-QVYKGL  100 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~-qvy~gl  100 (343)
                      ++.+|+|+|+|||||||++..||..++...||+.|.+ ++++++
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            4789999999999999999999999983348899985 444444

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.46  E-value=0.00011  Score=59.38  Aligned_cols=26  Identities=31%  Similarity=0.574  Sum_probs=24.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..++|+||+||||||+++.++..+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC
Confidence            56899999999999999999999987

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.45  E-value=0.00015  Score=66.96  Aligned_cols=79  Identities=14%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      ..++-|.-+.++-.+.++|+++.          +.|++-+++|.+|||||-+|+.+.+.....=+|.+|.+. +.+.+..
T Consensus         8 nL~IE~~TsqG~vK~VD~v~ltl----------nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~R-f~~idLL   76 (330)
T COG4170           8 NLTIEFKTSQGWVKAVDRVSMTL----------NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMR-FDDIDLL   76 (330)
T ss_pred             ceEEEEecCCCceEeeeeeeeee----------ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcc-cccchhh
Confidence            34445556666667889999998          889999999999999999999999988755688899994 7777775


Q ss_pred             CCCCCccccccc
Q 019312          104 TNKIPSHKRHNV  115 (343)
Q Consensus       104 T~kp~~~e~~~i  115 (343)
                      ...|  .+++.+
T Consensus        77 ~L~P--r~RRk~   86 (330)
T COG4170          77 RLSP--RERRKL   86 (330)
T ss_pred             cCCh--HHhhhh
Confidence            4433  344433

>PLN02459 probable adenylate kinase

Probab=97.43  E-value=0.00044  Score=65.74  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..++|+||.||||||++..|++.++ ...||.|.+
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~-~~~is~gdl   63 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLG-VPHIATGDL   63 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC-CcEEeCcHH
Confidence            4578899999999999999999998 889999988

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.39  E-value=0.00014  Score=65.89  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=24.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++ +++|+||||||||||+.+|+..++
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~~   47 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVLG   47 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence            567 999999999999999999998875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.38  E-value=0.00013  Score=65.30  Aligned_cols=29  Identities=34%  Similarity=0.460  Sum_probs=26.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      ..+..++|+|||||||||+++.|++.+++
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            56899999999999999999999998874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=97.37  E-value=0.00023  Score=65.60  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=50.8

Q ss_pred             CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ....++.|+..+..|.|+..-| .+...++..          +.+....++|.||+|||||++.|++..-
T Consensus         7 ~~~~~~aievsgl~f~y~~~dP-~~~Dfnldl----------p~gsRcLlVGaNGaGKtTlLKiLsGKhm   65 (291)
T KOG2355|consen    7 EAVSDFAIEVSGLQFKYKVSDP-IFFDFNLDL----------PAGSRCLLVGANGAGKTTLLKILSGKHM   65 (291)
T ss_pred             hhcccceEEEeccEEecccCCc-eEEEEeecc----------CCCceEEEEecCCCchhhhHHHhcCccc
Confidence            4456889999999999999887 556788886          7788999999999999999999998753

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.36  E-value=0.00013  Score=65.60  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=23.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|+|.||+||||||||..|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999997

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.36  E-value=0.00019  Score=73.81  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      .+-+.+|+|+|...+ -.+.++++.+          ..+..++++||||+|||||++.+...+.|.
T Consensus       389 vi~~~nv~F~y~~~~-~iy~~l~fgi----------d~~srvAlVGPNG~GKsTLlKl~~gdl~p~  443 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP-MIYKKLNFGI----------DLDSRVALVGPNGAGKSTLLKLITGDLQPT  443 (614)
T ss_pred             eEEEeccccCCCCcc-hhhhhhhccc----------CcccceeEecCCCCchhhhHHHHhhccccc
Confidence            567889999999876 5778888886          778999999999999999999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
3a8t_A	339	Plant Adenylate Isopentenyltransferase In Complex W		2e-85
3eph_A	409	Crystallographic Snapshots Of Eukaryotic Dimethylal		2e-19
3d3q_A	340	Crystal Structure Of Trna Delta(2)-Isopentenylpyrop		1e-17
2qgn_A	322	Crystal Structure Of Trna Isopentenylpyrophosphate		9e-15
3foz_A	316	Structure Of E. Coli Isopentenyl-Trna Transferase I		1e-12
2zm5_A	316	Crystal Structure Of Trna Modification Enzyme Miaa		3e-11
3crm_A	323	Structure Of Trna Dimethylallyltransferase: Rna Mod		4e-08

>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp Length = 339

Iteration: 1
 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 204/305 (66%), Gaps = 21/305 (6%)
Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
           +K+KL+V+MGATGTGKS LSIDLA  F P E+INSDKMQVYKGLDITTNKI    R  VP
Sbjct: 38  RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVP 96
Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGXX 176
           HHLLGE  P   E TP DFR  A  A+S+I  R+K P+LVGGSNSFI++LLV  +D    
Sbjct: 97  HHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGP 156
Query: 177 XXXXXXXXXXXXXXXXYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRM 236
                           Y+CCFLWVD S+++L DYL KRVDDMLE GMF+ELAEF+  +  
Sbjct: 157 GVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDE 216
Query: 237 RNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGE---WDPVRRGVYQEA------- 286
            ++   +   GL KAIGVPEF+RYF+ + P  VE  GE    D VRRG ++EA       
Sbjct: 217 DHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVE--GEDPGRDRVRRGAFEEAVRAIKEN 274
Query: 287 ------RQIDKILKLERAGWDLRRLDATTAFRMLVNGDQEWRC--VWERQVVEPSVKIVK 338
                 RQI KIL+L+ AGWDLRRLDAT +FR  +  D   +C  +WE+QV+EPSVKIV 
Sbjct: 275 TCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334
Query: 339 RFLDE 343
           RFLDE
Sbjct: 335 RFLDE 339

>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
           K++VI G TG GKS LSI LA +F   E+INSD MQVYK + I TNK P  +R  +PHH+
Sbjct: 3   KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYD 172
           +   V    E+    F  +  NAI DI  R K P++VGG++ ++ +L  +  D
Sbjct: 62  MNH-VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVD 113

>pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 61  LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL 120
           L+VI+G T +GK+ LSI++A +F   EII+ D  QVY+G DI T K+ + +   +PH+ +
Sbjct: 9   LIVIVGPTASGKTELSIEVAKKF-NGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXI 67
Query: 121 GEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
            + +P D  F+  +F+ +A+  I DI  R K P++ GG+  +I SLL
Sbjct: 68  -DILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113

>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate Transferase (Bh2366) From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr41. Length = 322

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 58  KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
           K+KLV I+G T  GK+  S+ LA R    E+I+ D  QVY+G DI T KI + +   VPH
Sbjct: 2   KEKLVAIVGPTAVGKTKTSVXLAKRL-NGEVISGDSXQVYRGXDIGTAKITAEEXDGVPH 60
Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQ 169
           HL+    P +  F+  DF+  A   I++I  R + P LVGG+  ++ +++ Q
Sbjct: 61  HLIDIKDPSE-SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQ 111

>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In Complex With E. Coli Trna(Phe) Length = 316

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
           K + +MG T +GK+ L+I+L  +  P E+I+ D   +YKG+DI T K  + +    PH L
Sbjct: 11  KAIFLMGPTASGKTALAIEL-RKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRL 69
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
           L    P    ++  DFR  A   ++DI +  + PLLVGG+  +  +LL
Sbjct: 70  LDIRDPSQA-YSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALL 116

>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The Complex With Trna(Phe) Length = 316

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
           K + + G T +GK+ L+I+L  +  P E+I+ D   +YKG DI T K  + +    PH L
Sbjct: 11  KAIFLXGPTASGKTALAIEL-RKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRL 69
Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
           L    P    ++  DFR  A    +DI +  + PLLVGG+  +  +LL
Sbjct: 70  LDIRDPSQA-YSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALL 116

>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna Modification Through A Channel Length = 323

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 62  VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLG 121
           + +MG T  GK+ L++ LA    P E+I+ D   +Y+G+DI T K         PH L+ 
Sbjct: 8   IFLMGPTAAGKTDLAMALAD-ALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 122 EFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLL 167
              P +  ++  +FR  A  A++   +R + PLLVGG+  +  +LL
Sbjct: 67  IRDPAE-SYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALL 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	1e-104
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	9e-47
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-40
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-35
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	2e-04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	3e-34
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	6e-34
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	1e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339

 Score =  308 bits (791), Expect = e-104
 Identities = 173/331 (52%), Positives = 215/331 (64%), Gaps = 17/331 (5%)

Query: 29  FLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEI 88
            +           T   +T+ +      +K+KL+V+MGATGTGKS LSIDLA  F P E+
Sbjct: 10  HMDYASVAMAAAPTTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHF-PLEV 68

Query: 89  INSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIIS 148
           INSDKMQVYKGLDITTNKI    R  VPHHLLGE  P   E TP DFR  A  A+S+I  
Sbjct: 69  INSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGKAVSEITG 128

Query: 149 RKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY 208
           R+K P+LVGGSNSFI++LLV  +D       +      VSS LRY+CCFLWVD S+++L 
Sbjct: 129 RRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLT 188

Query: 209 DYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPAS 268
           DYL KRVDDMLE GMF+ELAEF+  +   ++   +   GL KAIGVPEF+RYF+ + P  
Sbjct: 189 DYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGD 248

Query: 269 VEVKGE-WDPVRRGVYQEA-------------RQIDKILKLERAGWDLRRLDATTAFRML 314
           VE +    D VRRG ++EA             RQI KIL+L+ AGWDLRRLDAT +FR  
Sbjct: 249 VEGEDPGRDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKGAGWDLRRLDATESFRAA 308

Query: 315 VNGD--QEWRCVWERQVVEPSVKIVKRFLDE 343
           +  D  ++   +WE+QV+EPSVKIV RFLDE
Sbjct: 309 MTSDSGEKCTEIWEKQVLEPSVKIVSRFLDE 339

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409

 Score =  162 bits (412), Expect = 9e-47
 Identities = 80/353 (22%), Positives = 129/353 (36%), Gaps = 99/353 (28%)

Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
           K++VI G TG GKS LSI LA +F   E+INSD MQVYK + I TNK P  +R  +PHH+
Sbjct: 3   KVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61

Query: 120 LGEFVPDDVEFTPDDFR---------------------------------LQADNAISDI 146
           +      + E+    F                                       +    
Sbjct: 62  MNHVDWSE-EYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERK 120

Query: 147 ISRKKTPLLVGGSNSFIYSLLVQEYD----------------RGLSVFDDRFDSDSVSS- 189
           ++RK+  +L       IY+ L  + D                R L ++         S  
Sbjct: 121 LTRKQLDILESTDPDVIYNTL-VKCDPDIATKYHPNDYRRVQRMLEIY--YKTGKKPSET 177

Query: 190 ------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVS 243
                 +L+++  FLW+ S  + L+  L+ RVDDMLE G  +E+ + ++           
Sbjct: 178 FNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQ 237

Query: 244 LGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEA-------------RQID 290
              G+ + IG  EF  +            G+ D       ++              RQ+ 
Sbjct: 238 CENGVWQVIGFKEFLPWL----------TGKTDD-NTVKLEDCIERMKTRTRQYAKRQVK 286

Query: 291 --KILKLERAGWDLRRLDATTAFRMLVNGDQEWRCVWERQVVEPSVKIVKRFL 341
             K + +     D+  LDAT   +            W+    + ++ I   F+
Sbjct: 287 WIKKMLIPDIKGDIYLLDATDLSQ------------WDTNASQRAIAISNDFI 327

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322

 Score =  143 bits (363), Expect = 2e-40
 Identities = 73/291 (25%), Positives = 110/291 (37%), Gaps = 83/291 (28%)

Query: 58  KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH 117
           K+KLV I+G T  GK+  S+ LA R    E+I+ D MQVY+G+DI T KI + +   VPH
Sbjct: 2   KEKLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPH 60

Query: 118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS------------------ 159
           HL+    P +  F+  DF+  A   I++I  R + P LVGG+                  
Sbjct: 61  HLIDIKDPSE-SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRA 119

Query: 160 ----------------NSFIYSLLVQEYD----------------RGLSVFDD------R 181
                              ++  L  + D                R L +          
Sbjct: 120 DEDYRHELEAFVNSYGVQALHDKL-SKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTE 178

Query: 182 FDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNS 241
                  +   YN   + +     +LYD +N+RVD M+E G+ +E A+      +R+  S
Sbjct: 179 QARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDE-AKKLYDRGIRDCQS 237

Query: 242 VSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKI 292
                  ++AIG  E   Y            G          +EA    K 
Sbjct: 238 -------VQAIGYKEMYDYL----------DGNVT------LEEAIDTLKR 265

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score =  130 bits (329), Expect = 2e-35
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP 116
            K  L+VI+G T +GK+ LSI++A +F   EII+ D MQVY+G+DI T K+ + +   +P
Sbjct: 5   TKPFLIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIP 63

Query: 117 HHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLS 176
           H+++    PD   F+  +F+ +A+  I DI  R K P++ GG+  +I SLL        +
Sbjct: 64  HYMIDILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL-----YNYA 117

Query: 177 VFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD 216
            F+D   S+     ++     L    +   L++YL    D
Sbjct: 118 -FEDESISEDKMKQVKLKLKEL-EHLNNNKLHEYL-ASFD 154

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 191 LRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLK 250
             Y+   + ++ S + LY  +NKRVD ML  G+F E  +         + S       ++
Sbjct: 194 ENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNE-VQHLVEQGFEASQS-------MQ 245

Query: 251 AIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDK 291
           AIG  E               KG          + A +  K
Sbjct: 246 AIGYKELVPVI----------KGNIS------MENAVEKLK 270

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score =  125 bits (315), Expect = 3e-34
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 60  KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL 119
            L +I G T +GK+ ++I +A       ++  D++Q    +   + +    +  +     
Sbjct: 2   LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRVQCCPQIATGSGRPLESELQSTRRIY 60

Query: 120 LGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSL 166
           L      +      +   +      D    ++  +L GGS S +  +
Sbjct: 61  LDSRPLTE-GILDAESAHRRLIFEVDWRKSEEGLILEGGSISLLNCM 106

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score =  126 bits (318), Expect = 6e-34
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 44  MASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT 103
           M+  S    P      K + +MG T +GK+ L+I+L     P E+I+ D   +YKG+DI 
Sbjct: 1   MSDISKASLP------KAIFLMGPTASGKTALAIELRKIL-PVELISVDSALIYKGMDIG 53

Query: 104 TNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS 159
           T K  + +    PH LL    P    ++  DFR  A   ++DI +  + PLLVGG+
Sbjct: 54  TAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRRDALAEMADITAAGRIPLLVGGT 108

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score =  125 bits (316), Expect = 1e-33
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 56  SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNV 115
           S     + +MG T  GK+ L++ LA    P E+I+ D   +Y+G+DI T K         
Sbjct: 2   SSLPPAIFLMGPTAAGKTDLAMALADAL-PCELISVDSALIYRGMDIGTAKPSRELLARY 60

Query: 116 PHHLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGS 159
           PH L+    P +  ++  +FR  A  A++   +R + PLLVGG+
Sbjct: 61  PHRLIDIRDPAE-SYSAAEFRADALAAMAKATARGRIPLLVGGT 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 40/295 (13%), Positives = 86/295 (29%), Gaps = 83/295 (28%)

Query: 57  KKDKLVVIMGATGTGKSGLSIDLA-----TRFFPSEI--INSDKMQVYKGLDITTNKIPS 109
           +  K V+I G  G+GK+ +++D+            +I  +N            +   +  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLE 200

Query: 110 HKRHNVPHHLLGEFVPDDVEFTPDDFRL-QADNAISDIISRKKTP--LLVGGSNSFIYSL 166
             +  + + +   +       +    R+      +  ++  K     LLV          
Sbjct: 201 MLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---------- 249

Query: 167 L--VQEYDRGLSVFD----------DRFDSDSVSSSLRYNCCF------LWVDSSLQLLY 208
           L  VQ   +  + F+           +  +D +S++   +         L  D    LL 
Sbjct: 250 LLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 209 DYLNKRVDDM---------LESGMF-EELAEFFD---------SDRMRNNNSVSLGVGLL 249
            YL+ R  D+             +  E + +             D++      S     L
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----L 363

Query: 250 KAIGVPEFERYFKMYP--PASVEVKGE-----WDPVRRGVYQEARQIDKILKLER 297
             +   E+ + F      P S  +        W      +  +   +    KL +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF---DVIKSDVMVVVN--KLHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 67/207 (32%)

Query: 100 LDITTNKIPSHKRHNVPHHLLGEFVPD-DVEFTPDDFRLQADNAISDIISRKKTPLLVGG 158
           +D  T +   ++  ++       FV + D +   D  +        D I   K  +    
Sbjct: 7   MDFETGEH-QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS--- 62

Query: 159 SNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRV--- 215
               ++  L+ + +  +  F                     V+  L++ Y +L   +   
Sbjct: 63  GTLRLFWTLLSKQEEMVQKF---------------------VEEVLRINYKFLMSPIKTE 101

Query: 216 --DDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKG 273
                + + M+ E       DR+ N+N V                     +   +V    
Sbjct: 102 QRQPSMMTRMYIE-----QRDRLYNDNQV---------------------FAKYNVS--- 132

Query: 274 EWDPVRRGVYQEARQIDKILKLERAGW 300
                R   Y + RQ   +L+L  A  
Sbjct: 133 -----RLQPYLKLRQ--ALLELRPAKN 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	100.0
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	100.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	100.0
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	100.0
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.96
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	99.29
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.24
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.23
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.21
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.01
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.99
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.92
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.92
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.9
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.86
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.85
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.84
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.84
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.82
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.81
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.81
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.81
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.79
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.78
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.76
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.76
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.76
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.76
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.75
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.75
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.74
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.74
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.73
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.73
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.72
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.7
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.7
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.7
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.7
1g6h_A	257	High-affinity branched-chain amino acid transport	98.7
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.67
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.67
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.66
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.66
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.65
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.64
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.64
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.63
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.62
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.61
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.6
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.6
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.57
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.57
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.56
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.56
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.51
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.51
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.51
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.49
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.49
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.49
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.48
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.47
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.47
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.47
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.46
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.45
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.43
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.41
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.39
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.39
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.38
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.38
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.36
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.35
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.34
1via_A	175	Shikimate kinase; structural genomics, transferase	98.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.31
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.3
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.3
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.3
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.29
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.28
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.28
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.26
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.26
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.22
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.22
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.19
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.18
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.18
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.08
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.08
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.06
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.05
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.04
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.04
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.03
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.99
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.98
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.93
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.93
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.9
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.9
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.89
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.89
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.88
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.88
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.86
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.86
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.79
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.78
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.78
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.78
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.76
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.68
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.68
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.67
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.66
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.64
2og2_A	359	Putative signal recognition particle receptor; nuc	97.63
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.61
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.61
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.6
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.6
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.6
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.59
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.58
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.56
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.56
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.56
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.55
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.55
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.54
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.54
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.53
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.53
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.5
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.49
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.48
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.48
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.47
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.47
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.46
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.45
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.45
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.45
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.44
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.43
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.42
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.42
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.41
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.4
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.4
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.39
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.38
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.36
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.35
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.35
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.35
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.34
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.33
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.32
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.32
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.31
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.31
3ice_A	422	Transcription termination factor RHO; transcriptio	97.3
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.29
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.29
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.27
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.26
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.26
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.26
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.25
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.25
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.24
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.23
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.23
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.23
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.21
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.19
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.18
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.18
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.18
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.15
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.13
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.13
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.11
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.1
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.1
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.08
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.04
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.03
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.03
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.01
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.99
3bos_A	242	Putative DNA replication factor; P-loop containing	96.98
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.98
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.87
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.85
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.83
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.81
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.8
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.78
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.78
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.78
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.77
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.76
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.75
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.75
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.74
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.72
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.69
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.67
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.66
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.59
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.55
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.54
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.53
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.51
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.49
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.46
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.41
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.37
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.37
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.34
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.3
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.29
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.29
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.29
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.27
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.25
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.25
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.24
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.23
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.2
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.2
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.2
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.18
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.16
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.13
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.07
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.06
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.06
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.06
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.03
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.02
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.02
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.01
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.99
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.99
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.98
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.97
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.93
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.92
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.86
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.85
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.85
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.84
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.84
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.81
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.81
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.8
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.8
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.8
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.79
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.78
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.77
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.76
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.75
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.74
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.73
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.72
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.71
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.71
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.7
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.69
3co5_A	143	Putative two-component system transcriptional RES	95.69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.68
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.66
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.63
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.61
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.61
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.61
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.57
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.56
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.54
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.54
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.5
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.48
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.44
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.42
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.41
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.36
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.34
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.34
2qgz_A	308	Helicase loader, putative primosome component; str	95.33
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.33
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.31
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.3
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.3
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.28
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.27
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.24
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.23
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.22
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.2
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.18
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.18
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.18
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.17
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.12
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.11
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.09
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.09
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.09
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.09
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.06
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.04
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.04
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.03
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.03
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.01
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.01
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.01
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.0
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.99
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.97
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.96
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	94.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.9
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	94.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.9
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.89
3pvs_A	447	Replication-associated recombination protein A; ma	94.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.87
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.86
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.84
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.83
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.82
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.78
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	94.77
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.76
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.74
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.73
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.7
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.67
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	94.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.65
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.64
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.64
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.63
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.62
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.6
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.6
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.59
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.58
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.58
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.56
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.55
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.55
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.55
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.54
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.53
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.5
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.47
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.46
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.45
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.44
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.42
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.39
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.35
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.35
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.33
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.31
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	94.3
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.27
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.26
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.25
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.23
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.23
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	94.21
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.21
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.21
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.2
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.16
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.16
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.12
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.11
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.1
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.09
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.07
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	94.06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.05
2xxa_A	433	Signal recognition particle protein; protein trans	94.05
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.02
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.02
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.01
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.01
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.98
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	93.93
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	93.9
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.9
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.89
2chq_A	319	Replication factor C small subunit; DNA-binding pr	93.89
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.87
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.84
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.78
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.78
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.76
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.71
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.68
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.68
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	93.66
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.65
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.65
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	93.62
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.56
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.54
2fna_A	357	Conserved hypothetical protein; structural genomic	93.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.47
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.44
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.42
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	93.38

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=100.00  E-value=5.9e-63  Score=479.33  Aligned_cols=284  Identities=56%  Similarity=0.933  Sum_probs=233.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccC-CCcccChhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVP-DDVEFTPDDF  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~-~~~~~s~~~f  135 (343)
                      .++++|+|+||||||||||++.||+.++ ++|||+|++|+|+|++|+|+||+.+|+.++||||+++.++ .+ .|++.+|
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e-~~s~~~F  115 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARG-ELTPADF  115 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGC-CCCHHHH
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC-CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccC-ccCHHHH
Confidence            4567999999999999999999999999 9999999999999999999999999999999999999999 78 9999999


Q ss_pred             hhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcc-cccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          136 RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRG-LSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       136 ~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~-~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      ++.+.++|++|.++|++||+|||||+|+++++.+.++|. .++.... +..+++..+++++++|||++++++|++||++|
T Consensus       116 ~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~-~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  194 (339)
T 3a8t_A          116 RSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEG-SHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR  194 (339)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC--------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhc-ccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence            999999999999999999999999999999998865443 2211110 00133334578899999999999999999999


Q ss_pred             HHHHHhccHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCC-------Cc--cCcCChHHHHHHHHHH
Q 019312          215 VDDMLESGMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPA-------SV--EVKGEWDPVRRGVYQE  285 (343)
Q Consensus       215 v~~Ml~~GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~-------~~--~~~~~~d~~~~~~~~~  285 (343)
                      ++.|+++||++||++|++.+......+.+...+++|+|||||+++||+++.+.       .+  +.+.+++++++.+..+
T Consensus       195 ~~~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eaie~ik~~  274 (339)
T 3a8t_A          195 VDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKEN  274 (339)
T ss_dssp             HHHHHHHTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccHhhhccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHHHHHHHH
Confidence            99999999999999999765421000111248999999999999999974221       00  0123467888888999


Q ss_pred             HHHHHHHH--hhhh---CCCCeeEecchhhHHHhhc--CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312          286 ARQIDKIL--KLER---AGWDLRRLDATTAFRMLVN--GDQEWRCVWERQVVEPSVKIVKRFLDE  343 (343)
Q Consensus       286 tRQ~ak~q--~l~~---~gw~i~~ld~t~~~~~~~~--~~~~~~~~W~~~V~~pa~~iv~~fl~~  343 (343)
                      ||||||+|  |+++   .+|++||+|+|+++++...  ++.++++.|+++|++||++||++||+|
T Consensus       275 TR~yAKRQ~tWfr~~~~~~w~i~~lDat~~~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~  339 (339)
T 3a8t_A          275 TCHLAKRQIGKILRLKGAGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVSRFLDE  339 (339)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCEEEEECHHHHHHHHSTTTTHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccCCCCCCceeeeccccchhhhhhccccchhhHHHHHHHHHHHHHHHHHHhhC
Confidence            98888877  5554   4799999999999865554  567788999999999999999999986

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=100.00  E-value=1.1e-61  Score=479.71  Aligned_cols=266  Identities=31%  Similarity=0.526  Sum_probs=222.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      .++|+|+||||||||||+..|++.++ ++|||+|++|+|++++|+|+||+.+|+.+++|||++..++.+ .|++++|.++
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~-~~s~~~F~~~   79 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSE-EYYSHRFETE   79 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTS-CCCHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHh-HhhHHHHHHH
Confidence            46899999999999999999999999 899999999999999999999999999999999999999999 9999999999


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCccc--------------------------------c----------
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGL--------------------------------S----------  176 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~--------------------------------~----------  176 (343)
                      |..+|++|.++|++||||||||||++||+.+.+++..                                +          
T Consensus        80 a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~R  159 (409)
T 3eph_A           80 CMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRR  159 (409)
T ss_dssp             HHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHH
Confidence            9999999999999999999999999999987542210                                0          


Q ss_pred             ------cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCCCc
Q 019312          177 ------VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNSVS  243 (343)
Q Consensus       177 ------~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~~~  243 (343)
                            ++..  ++++++.       .++|++++|||+++|++|++||++||+.|+++||+|||+.|++.+........+
T Consensus       160 i~RALEV~~~--TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~  237 (409)
T 3eph_A          160 VQRMLEIYYK--TGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQ  237 (409)
T ss_dssp             HHHHHHHHHH--HCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGG
T ss_pred             HHHHHHHHHH--HCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccccccccc
Confidence                  1111  1233331       257899999999999999999999999999999999999999864221001101


Q ss_pred             cccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhC-----CCCeeEecchhhHHHhhc
Q 019312          244 LGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERA-----GWDLRRLDATTAFRMLVN  316 (343)
Q Consensus       244 ~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~-----gw~i~~ld~t~~~~~~~~  316 (343)
                      .+.+++|+||||||++||++...   +.+.+++++++.+..+||||||+|  |+++.     ++++||+|+|++      
T Consensus       238 ~~~~~~~aIGYkE~~~yL~g~~~---~~e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~------  308 (409)
T 3eph_A          238 CENGVWQVIGFKEFLPWLTGKTD---DNTVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL------  308 (409)
T ss_dssp             TTSGGGGSTTTGGGGGGGC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCT------
T ss_pred             ccccchhcccHHHHHHHHcCCCc---ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCCh------
Confidence            24689999999999999985211   012568999999999999999987  56653     467999999998      


Q ss_pred             CCchhhhhhhhHhhhHHHHHHHHHhcC
Q 019312          317 GDQEWRCVWERQVVEPSVKIVKRFLDE  343 (343)
Q Consensus       317 ~~~~~~~~W~~~V~~pa~~iv~~fl~~  343 (343)
                            +.|+++|++||++||++||++
T Consensus       309 ------~~W~~~V~~pa~~iv~~fl~~  329 (409)
T 3eph_A          309 ------SQWDTNASQRAIAISNDFISN  329 (409)
T ss_dssp             ------TTCTTTTHHHHHHHHHHHHTT
T ss_pred             ------hHHHHHHHHHHHHHHHHHhcC
Confidence                  899999999999999999974

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=100.00  E-value=2.9e-57  Score=435.28  Aligned_cols=230  Identities=30%  Similarity=0.489  Sum_probs=200.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      +++|+|+||||||||||+..||+.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++..+|.+ .|++++|.++
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e-~~s~~~F~~~   80 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSE-SFSVADFQDL   80 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTS-CCCHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhh-hccHHHHHHH
Confidence            56899999999999999999999998 999999999999999999999999999999999999999999 9999999999


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCccc---------------------------------c---------
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGL---------------------------------S---------  176 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~---------------------------------~---------  176 (343)
                      |...|++|.++|++||||||||||++||++|...+..                                 +         
T Consensus        81 a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~  160 (322)
T 3exa_A           81 ATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYR  160 (322)
T ss_dssp             HHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHH
Confidence            9999999999999999999999999999987432211                                 0         


Q ss_pred             -------cccccCCCccccc--------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCCC
Q 019312          177 -------VFDDRFDSDSVSS--------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNNS  241 (343)
Q Consensus       177 -------~~~~~~~~~~~~~--------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~~  241 (343)
                             ++..  ++++++.        .++|++++|+|+++|++|++||++||+.|+++||+|||+.|++.+ .     
T Consensus       161 Ri~RALEV~~~--TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~-~-----  232 (322)
T 3exa_A          161 RVIRALEIIKL--TGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRG-I-----  232 (322)
T ss_dssp             HHHHHHHHHHH--TC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-C-----
T ss_pred             HHHHHHHHHHH--HCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC-C-----
Confidence                   1111  1234432        246889999999999999999999999999999999999999876 3     


Q ss_pred             CccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchh
Q 019312          242 VSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATT  309 (343)
Q Consensus       242 ~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~  309 (343)
                        ++.+++|+|||||+++||++        +.+++++++.+..+||||||||  |+++ ..+++|+|+.+
T Consensus       233 --~~~~a~~aIGYkE~~~yL~G--------~~sl~eaie~i~~~TR~yAKRQ~TWfR~-~~~~~w~~~~~  291 (322)
T 3exa_A          233 --RDCQSVQAIGYKEMYDYLDG--------NVTLEEAIDTLKRNSRRYAKRQLTWFRN-KANVTWFDMTD  291 (322)
T ss_dssp             --CSSTGGGSTTTHHHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEECTT
T ss_pred             --CcCccceeeeHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCeEeCCCC
Confidence              26789999999999999985        5679999999999999999988  5664 34699999754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=100.00  E-value=6.5e-57  Score=432.21  Aligned_cols=233  Identities=27%  Similarity=0.378  Sum_probs=203.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      .+++++|+||||||||||+..||+.++ ++|||+||+|+|++++|+|+||+.+|+.+++|||++..++.+ .|++++|.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~~   86 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP-VELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRR   86 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHHH
Confidence            457999999999999999999999998 999999999999999999999999999999999999999999 999999999


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhc--------------------------------Ccccc---------
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEY--------------------------------DRGLS---------  176 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~--------------------------------dp~~~---------  176 (343)
                      +|.+.|++|+++|++||||||||||++||++|..                                ||.++         
T Consensus        87 ~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~  166 (316)
T 3foz_A           87 DALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQ  166 (316)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHH
Confidence            9999999999999999999999999999998742                                22211         


Q ss_pred             -------cccccCCCccccc-------ccCCceEEEEEeC-CHHHHHHHHHHHHHHHHhccHHHHHHHHHhcc-ccccCC
Q 019312          177 -------VFDDRFDSDSVSS-------SLRYNCCFLWVDS-SLQLLYDYLNKRVDDMLESGMFEELAEFFDSD-RMRNNN  240 (343)
Q Consensus       177 -------~~~~~~~~~~~~~-------~~~~~~~~i~L~~-~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~-~~~~~~  240 (343)
                             ++..+  +++++.       .++|++++|+|.+ +|++|++||++||+.|+++||+|||+.|++.+ +.    
T Consensus       167 Ri~RALEV~~~T--G~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~~----  240 (316)
T 3foz_A          167 RLSRALEVFFIS--GKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLH----  240 (316)
T ss_dssp             HHHHHHHHHHHH--SSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCC----
T ss_pred             HHHHHHHHHHHH--CCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCC----
Confidence                   12111  233331       2568899999998 99999999999999999999999999999875 32    


Q ss_pred             CCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecchhh
Q 019312          241 SVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDATTA  310 (343)
Q Consensus       241 ~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t~~  310 (343)
                         .+.+++|+|||||+++||++        +.+++++++.+..+||||||||  |+++ ..+++|+|+++.
T Consensus       241 ---~~~~~~~aIGYkE~~~yL~G--------~~s~~eai~~~~~~TR~yAKRQ~TWfR~-~~~~~w~~~~~~  300 (316)
T 3foz_A          241 ---TDLPSIRCVGYRQMWSYLEG--------EISYDEMVYRGVCATRQLAKRQITWLRG-WEGVHWLDSEKP  300 (316)
T ss_dssp             ---TTSTTTTSTTHHHHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCEEEETTCH
T ss_pred             ---ccCccceeeehhhHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEeCCcCh
Confidence               36789999999999999985        5679999999999999999988  6664 236999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=100.00  E-value=1.6e-50  Score=390.67  Aligned_cols=231  Identities=26%  Similarity=0.381  Sum_probs=194.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      +++|+|+||||||||||+..||+.++ .++||.|++|+|+|++|+|+||+.+|+.+++|||+++.++.+ .+++..|++.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~-~~~~~~F~~~   82 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP-CELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAE-SYSAAEFRAD   82 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC-CcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCccc-ccCHHHHHHH
Confidence            35899999999999999999999999 999999999999999999999999999999999999999999 9999999999


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhh--------------------------------cCcccc----------
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQE--------------------------------YDRGLS----------  176 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~--------------------------------~dp~~~----------  176 (343)
                      +.+.|.++.++|+.||+||||++|++||+++.                                +||.++          
T Consensus        83 a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~R  162 (323)
T 3crm_A           83 ALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQR  162 (323)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC------------------------------------------------
T ss_pred             HHHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHH
Confidence            99999999999999999999999999999863                                133221          


Q ss_pred             ------cccccCCCccccc------------------ccCCceEEEEEeCC-HHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 019312          177 ------VFDDRFDSDSVSS------------------SLRYNCCFLWVDSS-LQLLYDYLNKRVDDMLESGMFEELAEFF  231 (343)
Q Consensus       177 ------~~~~~~~~~~~~~------------------~~~~~~~~i~L~~~-re~L~~RI~~Rv~~Ml~~GlleEv~~l~  231 (343)
                            ++..+  +++++.                  .++|++++|+|+++ |++|++||++||++|+++||+|||+.|+
T Consensus       163 i~RALEv~~~t--G~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~  240 (323)
T 3crm_A          163 LMRALEVYRLG--GVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH  240 (323)
T ss_dssp             ---------------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHH--CCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence                  12211  233321                  13578899999986 9999999999999999999999999999


Q ss_pred             hcc-ccccCCCCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecch
Q 019312          232 DSD-RMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDAT  308 (343)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~t  308 (343)
                      +.+ +.       .+.+++|+|||||+++||++        +.+++++++.+..+||||||+|  |+++ ..+++|+|++
T Consensus       241 ~~~~~~-------~~~~~~~aIGyke~~~yl~g--------~~~~~eai~~~~~~Tr~yAKRQ~TWfr~-~~~~~w~~~~  304 (323)
T 3crm_A          241 ARSDLH-------AGLPSIRAVGYRQVWDYLDG--------KLSYAEMTERGIIATRQLAKRQFTWLRS-WSHLHWMDSL  304 (323)
T ss_dssp             TCTTCC-------TTSSGGGSTTHHHHHHHHTT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCEEEETT
T ss_pred             hcCCCC-------CCCcchheecHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEecCC
Confidence            765 22       26789999999999999985        5678999999999999999988  5664 2369999864


Q ss_pred             h
Q 019312          309 T  309 (343)
Q Consensus       309 ~  309 (343)
                      +
T Consensus       305 ~  305 (323)
T 3crm_A          305 A  305 (323)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=100.00  E-value=2e-47  Score=371.21  Aligned_cols=227  Identities=31%  Similarity=0.493  Sum_probs=197.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      .+|+|+||||||||||+..|++.++ ++|||.|++|+|++++|+|+||+.+|+.+++|||++..++.+ .+++.+|.+.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a   85 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRA   85 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-CceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHH
Confidence            5899999999999999999999999 899999999999999999999999999999999999999999 99999999999


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhh------cCcc----c--------c-------------------------
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQE------YDRG----L--------S-------------------------  176 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~------~dp~----~--------~-------------------------  176 (343)
                      ...+.++.++|+.||+|||+++|+++++.+.      .|++    .        +                         
T Consensus        86 ~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d  165 (340)
T 3d3q_A           86 EKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNN  165 (340)
T ss_dssp             HHHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTC
T ss_pred             HHHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccC
Confidence            9999999999999999999999999998764      1222    0        0                         


Q ss_pred             ---------cccccCCCccccc-------ccCCceEEEEEeCCHHHHHHHHHHHHHHHHhccHHHHHHHHHhccccccCC
Q 019312          177 ---------VFDDRFDSDSVSS-------SLRYNCCFLWVDSSLQLLYDYLNKRVDDMLESGMFEELAEFFDSDRMRNNN  240 (343)
Q Consensus       177 ---------~~~~~~~~~~~~~-------~~~~~~~~i~L~~~re~L~~RI~~Rv~~Ml~~GlleEv~~l~~~~~~~~~~  240 (343)
                               ++..  ++++++.       ..+|++++|+|+++|++|++||++||+.|+++||+|||+.|++.+..    
T Consensus       166 ~~Ri~RALEv~~~--tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~----  239 (340)
T 3d3q_A          166 RKRVLRAIEYYLK--TKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFE----  239 (340)
T ss_dssp             HHHHHHHHHHHHH--HCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCT----
T ss_pred             chhhhhHHHHHHH--hCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC----
Confidence                     0111  1234432       13589999999999999999999999999999999999999987531    


Q ss_pred             CCccccchhhhcChHHHHHHHhhCCCCCccCcCChHHHHHHHHHHHHHHHHHH--hhhhCCCCeeEecc
Q 019312          241 SVSLGVGLLKAIGVPEFERYFKMYPPASVEVKGEWDPVRRGVYQEARQIDKIL--KLERAGWDLRRLDA  307 (343)
Q Consensus       241 ~~~~~~~~~qaIGykE~~~yl~~~~~~~~~~~~~~d~~~~~~~~~tRQ~ak~q--~l~~~gw~i~~ld~  307 (343)
                          +.+++|+|||||+++||++        +.+++++++.+..+||||||+|  |+++ ..+++|+|+
T Consensus       240 ----~~~~~~aIGyke~~~yl~g--------~~~~~ea~~~~~~~Tr~yAKRQ~TWfr~-~~~~~w~~~  295 (340)
T 3d3q_A          240 ----ASQSMQAIGYKELVPVIKG--------NISMENAVEKLKQHSRQYAKRQLTWFKN-KMNVHWLNK  295 (340)
T ss_dssp             ----TSSGGGSTTTTTHHHHHHT--------SSCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEET
T ss_pred             ----cchhhhhccHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCeeecC
Confidence                4678999999999999985        5679999999999999999988  6765 235899986

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.96  E-value=1.4e-28  Score=228.82  Aligned_cols=208  Identities=15%  Similarity=0.118  Sum_probs=169.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ++++|+||||||||||++.||+.++ .++||.|++++|+|++++|++|+.+++.+++||+++..++.++.++...|.+.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence            4789999999999999999999998 899999999889999999999999999999999999888765568999999999


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCH-HHHHHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSL-QLLYDYLNKRVDDM  218 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~r-e~L~~RI~~Rv~~M  218 (343)
                      ...+ ++.++|+.+|++||++.|+++++.+..       ..          ..++++++||+++. +.+.+|+.+|.++|
T Consensus        81 ~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~-------~~----------~~~~~~~i~l~~~~~e~l~~Rl~~R~~~m  142 (253)
T 2ze6_A           81 IFEV-DWRKSEEGLILEGGSISLLNCMAKSPF-------WR----------SGFQWHVKRLRLGDSDAFLTRAKQRVAEM  142 (253)
T ss_dssp             HHHH-HTTTTSSEEEEEECCHHHHHHHHHCTT-------TT----------SSCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHhCCCCeEEeccHHHHHHHHHhccc-------cc----------ccCceEEEEecchhHHHHHHHHHHHHHHH
Confidence            9999 888999999999999999999875310       00          13456789999885 99999999999999


Q ss_pred             Hhc-----cHHHHHHHHHhccccccCCCCccccchhhhcChHHHHHHHhhCCCCCc----cCcCChHHHHHHHHHHHHHH
Q 019312          219 LES-----GMFEELAEFFDSDRMRNNNSVSLGVGLLKAIGVPEFERYFKMYPPASV----EVKGEWDPVRRGVYQEARQI  289 (343)
Q Consensus       219 l~~-----GlleEv~~l~~~~~~~~~~~~~~~~~~~qaIGykE~~~yl~~~~~~~~----~~~~~~d~~~~~~~~~tRQ~  289 (343)
                      +..     |+++|+..+++....        ...+...+||+|+++|+.......+    ..+...+++.+.....++||
T Consensus       143 l~~~~~~~~~l~e~~~~~~~p~~--------~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  214 (253)
T 2ze6_A          143 FAIREDRPSLLEELAELWNYPAA--------RPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLEH  214 (253)
T ss_dssp             HCCCSSSCCHHHHHHHHHTSTTH--------HHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHHHHHH
T ss_pred             HhcCcccchHHHHHHHhcCCcch--------HHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            887     999999999875321        2345568999999999974221111    01222456667777777888


Q ss_pred             HHHHh
Q 019312          290 DKILK  294 (343)
Q Consensus       290 ak~q~  294 (343)
                      ||+|.
T Consensus       215 a~~q~  219 (253)
T 2ze6_A          215 ALSQE  219 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=99.29  E-value=6e-13  Score=120.10  Aligned_cols=75  Identities=25%  Similarity=0.344  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc---ccCCCCCcccccccCccc----cccccCCCcc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD---ITTNKIPSHKRHNVPHHL----LGEFVPDDVE  129 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~---I~T~kp~~~e~~~i~h~l----i~~~~~~~~~  129 (343)
                      ..+..++|+||||||||||+..|++...  ++||.|++|+|++++   |+|++|+      ++|||    ++++++.+ .
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~-~  102 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH--RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMN-L  102 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHH-H
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccc-c
Confidence            3578899999999999999999999875  999999999999999   8999885      89999    99999999 9


Q ss_pred             cChhhhhhhhh
Q 019312          130 FTPDDFRLQAD  140 (343)
Q Consensus       130 ~s~~~f~~~a~  140 (343)
                      |++..|+..+.
T Consensus       103 f~~~~f~~~a~  113 (205)
T 2qmh_A          103 FGAGAVREDTT  113 (205)
T ss_dssp             HCTTSBCSCCB
T ss_pred             CCHHHHHhcCc
Confidence            99999987764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.24  E-value=1.2e-12  Score=117.31  Aligned_cols=124  Identities=13%  Similarity=0.088  Sum_probs=80.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ++|++++|+||||||||||++.|++.+++.         ++...+.+|.+|...+..|+.||+++...+.. .+....|.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~---------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~-~~~~~~~l   75 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETS---------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQ-AIKDGKML   75 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCC---------CEECCCEESSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCc---------EEEEEecccccCcCcccCCceeEEecHHHHHH-HHhcCcEE
Confidence            568999999999999999999999988621         24566778899988889999999877554443 33233333


Q ss_pred             hh----------hhHHHHHHHhcCCeeEEEc---CchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCC
Q 019312          137 LQ----------ADNAISDIISRKKTPLLVG---GSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSS  203 (343)
Q Consensus       137 ~~----------a~~~i~~i~~~g~~pIlvG---GT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~  203 (343)
                      +.          ....+.++.+.|+.+|+.+   |...    +...                     .+....+|+++++
T Consensus        76 e~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~----~~~~---------------------~~~~~~i~i~~ps  130 (208)
T 3tau_A           76 EYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQ----VRKA---------------------MPEGIFIFLTPPD  130 (208)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHH----HHHH---------------------CTTSEEEEEECTT
T ss_pred             EEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHH----HHHh---------------------CCCeEEEEEeCCC
Confidence            22          2356788888999888743   3211    1100                     0112345555666


Q ss_pred             HHHHHHHHHHHH
Q 019312          204 LQLLYDYLNKRV  215 (343)
Q Consensus       204 re~L~~RI~~Rv  215 (343)
                      .++|.+|+.+|-
T Consensus       131 ~~~l~~Rl~~R~  142 (208)
T 3tau_A          131 LSELKNRIIGRG  142 (208)
T ss_dssp             TTTSSCC-----
T ss_pred             HHHHHHHHHhcC
Confidence            889999988884

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.23  E-value=6.3e-12  Score=112.06  Aligned_cols=124  Identities=19%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      +.|+|+||||||||||++.|...++       +.+  ..-.+.+|.+|.+.|..|+.||+++.-.+.. ....+.|.+.+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~-------~~~--~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~-~i~~g~flE~~   71 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYP-------DSF--GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS-MIKNNEFIEWA   71 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT-------TTE--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC-------CCe--EEEEEEeccCCCCCCcCCceeEeecHHHHHH-HHHcCCEEEEE
Confidence            4589999999999999999988876       233  3356778999999999999999998776665 55555555543


Q ss_pred             ----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCc-eEEEEEeCCHHHHH
Q 019312          140 ----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYN-CCFLWVDSSLQLLY  208 (343)
Q Consensus       140 ----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~~re~L~  208 (343)
                                ...+.++.+.|+.+|+.+ .--.++.+-.                     ..+.+ ..+|.++++.++|.
T Consensus        72 ~~~g~~YGt~~~~v~~~l~~g~~vil~i-d~~g~~~~k~---------------------~~~~~~~~Ifi~pps~e~L~  129 (186)
T 1ex7_A           72 QFSGNYYGSTVASVKQVSKSGKTCILDI-DMQGVKSVKA---------------------IPELNARFLFIAPPSVEDLK  129 (186)
T ss_dssp             EETTEEEEEEHHHHHHHHHHTSEEEEEC-CHHHHHHHHT---------------------CGGGCCEEEEEECSCHHHHH
T ss_pred             EEcCceeeeecceeeehhhCCCEEEecC-CHHHHHHHHH---------------------hcccCceEEEEeCCCHHHHH
Confidence                      466788888898776654 2222222211                     11122 34566788999999


Q ss_pred             HHHHHHH
Q 019312          209 DYLNKRV  215 (343)
Q Consensus       209 ~RI~~Rv  215 (343)
                      +||.+|-
T Consensus       130 ~RL~~Rg  136 (186)
T 1ex7_A          130 KRLEGRG  136 (186)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9999994

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.21  E-value=1.9e-11  Score=109.99  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++++++|+||||||||||++.|++.++ ..        +....+.+|.+|...|..|++||+++...+.. .+....|.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~-~~--------~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~-~i~~~~fl   86 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP-EK--------FVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR-NISANEFL   86 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT-TT--------EECCCCEECSCCCTTCCTTSSCEECCHHHHHH-HHHTTCEE
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC-cc--------EEeeecccccCCcCCeeccccceeccHHHhhh-hhhhhhhh
Confidence            4689999999999999999999999876 21        23455678999999999999999988666555 44444554


Q ss_pred             hhh----------hHHHHHHHhcCCeeEEEc
Q 019312          137 LQA----------DNAISDIISRKKTPLLVG  157 (343)
Q Consensus       137 ~~a----------~~~i~~i~~~g~~pIlvG  157 (343)
                      +.+          ...++++.++|+.+|+..
T Consensus        87 e~~~~~~n~YGt~~~~v~~~l~~G~~vildi  117 (197)
T 3ney_A           87 EFGSYQGNMFGTKFETVHQIHKQNKIAILDI  117 (197)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             hhhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence            433          466888999999888864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=9.3e-11  Score=103.80  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCc
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH  117 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h  117 (343)
                      .++++++++          .++++|+|+||+||||||+++.|++.++ ..+++.|.+. .             +..+.. 
T Consensus        14 ~~~~~~~~~----------~~~~~i~l~G~~GsGKsTl~~~La~~l~-~~~i~~d~~~-~-------------~~~g~~-   67 (199)
T 3vaa_A           14 GTENLYFQS----------NAMVRIFLTGYMGAGKTTLGKAFARKLN-VPFIDLDWYI-E-------------ERFHKT-   67 (199)
T ss_dssp             --------------------CCCEEEEECCTTSCHHHHHHHHHHHHT-CCEEEHHHHH-H-------------HHHTSC-
T ss_pred             CCCceeEec----------CCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcchHHH-H-------------HHhCCc-
Confidence            567888886          6788999999999999999999999998 7777777651 1             000100 


Q ss_pred             cccccccCCCcccChhhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEE
Q 019312          118 HLLGEFVPDDVEFTPDDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCF  197 (343)
Q Consensus       118 ~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~  197 (343)
                          ..+... ......|.....+.+.++...+...|.+||....         ++..  .          ..+.....+
T Consensus        68 ----i~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~---------~~~~--~----------~~l~~~~~v  121 (199)
T 3vaa_A           68 ----VGELFT-ERGEAGFRELERNMLHEVAEFENVVISTGGGAPC---------FYDN--M----------EFMNRTGKT  121 (199)
T ss_dssp             ----HHHHHH-HHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGG---------STTH--H----------HHHHHHSEE
T ss_pred             ----HHHHHH-hcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEc---------cHHH--H----------HHHHcCCEE
Confidence                000111 2233456666667777777666655555653221         1110  0          000112467


Q ss_pred             EEEeCCHHHHHHHHH
Q 019312          198 LWVDSSLQLLYDYLN  212 (343)
Q Consensus       198 i~L~~~re~L~~RI~  212 (343)
                      +||+++.+++.+|+.
T Consensus       122 i~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A          122 VFLNVHPDVLFRRLR  136 (199)
T ss_dssp             EEEECCHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHh
Confidence            899999999999997

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.00  E-value=4.5e-10  Score=98.70  Aligned_cols=125  Identities=15%  Similarity=0.116  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh----
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP----  132 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~----  132 (343)
                      .+|.+++|+||||||||||++.|++.++ .       +  +......+..+...+..++.+++.+...... ....    
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   73 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA-E-------I--KISISHTTRPKRPGDQEGVDYFFIDETRFQA-MVKEGAFL   73 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS-S-------E--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHHTCEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC-C-------e--EEeceeccCCCchhHhcCceEEeccHHHHHH-HHhcCcEE
Confidence            5689999999999999999999999864 2       2  2222333444544555666655443221111 0000    


Q ss_pred             ------hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312          133 ------DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL  206 (343)
Q Consensus       133 ------~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~  206 (343)
                            ..+.......+.++.+.|+.+|+.+ .-..+..+...                     ......++.++++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~-~~~~~~~~~~~---------------------~~~~~~v~~~~~~~e~  131 (205)
T 3tr0_A           74 EHATIYERHYGTEKDWVLRQLKAGRDVLLEI-DWQGARQIREL---------------------FPPALSIFILPPSIEA  131 (205)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHHHH---------------------CTTCEEEEEECSCHHH
T ss_pred             eeeeeecccccchHHHHHHHHHcCCeEEEEE-CHHHHHHHHHh---------------------CCCcEEEEEECcCHHH
Confidence                  0011122346677777888766654 21111111110                     0111234445567999


Q ss_pred             HHHHHHHH
Q 019312          207 LYDYLNKR  214 (343)
Q Consensus       207 L~~RI~~R  214 (343)
                      |.+|+.+|
T Consensus       132 l~~Rl~~R  139 (205)
T 3tr0_A          132 LRERLIKR  139 (205)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99999888

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.99  E-value=3.3e-10  Score=108.30  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             CccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           18 QQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ....+++.+|+|.|+... .+|+++++++          ++|++++|+||||||||||++.|++.+.|.    .|++ .+
T Consensus        50 ~~~~i~~~~vs~~y~~~~-~vL~~isl~i----------~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~----~G~I-~i  113 (306)
T 3nh6_A           50 QKGRIEFENVHFSYADGR-ETLQDVSFTV----------MPGQTLALVGPSGAGKSTILRLLFRFYDIS----SGCI-RI  113 (306)
T ss_dssp             SSCCEEEEEEEEESSTTC-EEEEEEEEEE----------CTTCEEEEESSSCHHHHHHHHHHTTSSCCS----EEEE-EE
T ss_pred             CCCeEEEEEEEEEcCCCC-ceeeeeeEEE----------cCCCEEEEECCCCchHHHHHHHHHcCCCCC----CcEE-EE
Confidence            456899999999998654 4899999998          899999999999999999999999999865    6888 48


Q ss_pred             ecccccCC
Q 019312           98 KGLDITTN  105 (343)
Q Consensus        98 ~gl~I~T~  105 (343)
                      .|.++...
T Consensus       114 ~G~~i~~~  121 (306)
T 3nh6_A          114 DGQDISQV  121 (306)
T ss_dssp             TTEETTSB
T ss_pred             CCEEcccC
Confidence            89888643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.95  E-value=2e-10  Score=103.78  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH-hhcCCCceecCCceEEEecccccCCCCCcccccccCc
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA-TRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPH  117 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la-~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h  117 (343)
                      ...+++++          .+|++++|+||||||||||++.|+ +.++ .         ++.+.++++.+|...+..++.+
T Consensus        17 ~~~~sl~v----------~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~-~---------~~~~~~~~~~~~~~g~~~g~~~   76 (231)
T 3lnc_A           17 QGPGSMLK----------SVGVILVLSSPSGCGKTTVANKLLEKQKN-N---------IVKSVSVTTRAARKGEKEGKDY   76 (231)
T ss_dssp             -----CCE----------ECCCEEEEECSCC----CHHHHHHC-----C---------EEECCCEESSCCCTTCCBTTTB
T ss_pred             cCCCCccc----------CCCCEEEEECCCCCCHHHHHHHHHhcCCC-C---------cccccccCCCCCCccccCCCeE
Confidence            34677776          789999999999999999999999 8875 2         3667788888887777777766


Q ss_pred             cccc
Q 019312          118 HLLG  121 (343)
Q Consensus       118 ~li~  121 (343)
                      ++.+
T Consensus        77 ~~~~   80 (231)
T 3lnc_A           77 YFVD   80 (231)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            5543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.92  E-value=5.3e-10  Score=103.42  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..++++.++++.|+.....+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.
T Consensus         5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~I-~i~   69 (247)
T 2ff7_A            5 HHDITFRNIRFRYKPDSPVILDNINLSI----------KQGEVIGIVGRSGSGKSTLTKLIQRFYIPE----NGQV-LID   69 (247)
T ss_dssp             CEEEEEEEEEEESSTTSCEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EET
T ss_pred             cCceeEEEEEEEeCCCCcceeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EEC
Confidence            4578999999999532345899999998          899999999999999999999999998854    6888 477


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        70 g~~~~   74 (247)
T 2ff7_A           70 GHDLA   74 (247)
T ss_dssp             TEETT
T ss_pred             CEEhh
Confidence            88775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.92  E-value=9.6e-10  Score=103.07  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=60.0

Q ss_pred             ccceeecccCCcCCcc-cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           19 QQHYSSFYSPFLHPKR-RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      ...+++.+++|.|... ...+|+++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~----~G~I-~~   78 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTL----------YPGKVTALVGPNGSGKSTVAALLQNLYQPT----GGKV-LL   78 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EE
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CCEE-EE
Confidence            3569999999999752 234899999998          899999999999999999999999998854    6888 47


Q ss_pred             ecccccC
Q 019312           98 KGLDITT  104 (343)
Q Consensus        98 ~gl~I~T  104 (343)
                      .|.++..
T Consensus        79 ~g~~i~~   85 (271)
T 2ixe_A           79 DGEPLVQ   85 (271)
T ss_dssp             TTEEGGG
T ss_pred             CCEEccc
Confidence            8888753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.90  E-value=4.8e-10  Score=104.15  Aligned_cols=140  Identities=14%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             ceeeccc-CCcCCcccccccccceeeeccCCCCCCCCCC---CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           21 HYSSFYS-PFLHPKRRRSRWRKTVMASTSHTPAPAHSKK---DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        21 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      .+++.++ +|.|.. ...+++++++++          .+   +++|+|+|++||||||+++.|++.++ ..+++.|.+  
T Consensus        17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i----------~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg-~~~~d~d~~--   82 (250)
T 3nwj_A           17 LLETGSLLHSPFDE-EQQILKKKAEEV----------KPYLNGRSMYLVGMMGSGKTTVGKIMARSLG-YTFFDCDTL--   82 (250)
T ss_dssp             ----------------CHHHHHHHHTT----------HHHHTTCCEEEECSTTSCHHHHHHHHHHHHT-CEEEEHHHH--
T ss_pred             ceEEcceeeEEecC-cchhhhhhhhhh----------hhhcCCCEEEEECCCCCCHHHHHHHHHHhcC-CcEEeCcHH--
Confidence            5788888 888832 344899999997          66   89999999999999999999999998 777777665  


Q ss_pred             EecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhHHHHHHHhc-CCeeEEEcCchhhHHHHHhhhcCccc
Q 019312           97 YKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADNAISDIISR-KKTPLLVGGSNSFIYSLLVQEYDRGL  175 (343)
Q Consensus        97 y~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~~i~~i~~~-g~~pIlvGGT~lY~~aLl~~~~dp~~  175 (343)
                      +....           .+..     .....+ .++...|++...+.+.++.+. ....|.+||. ..+        ++..
T Consensus        83 ~~~~~-----------~g~~-----i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG-~v~--------~~~~  136 (250)
T 3nwj_A           83 IEQAM-----------KGTS-----VAEIFE-HFGESVFREKETEALKKLSLMYHQVVVSTGGG-AVI--------RPIN  136 (250)
T ss_dssp             HHHHS-----------TTSC-----HHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEECCGG-GGG--------SHHH
T ss_pred             HHHHh-----------cCcc-----HHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEecCCC-eec--------CHHH
Confidence            21110           0000     000011 334556776666777777766 5555556652 211        1111


Q ss_pred             ccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          176 SVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      .        ..    +. ...+|||+++.++|.+|+.+
T Consensus       137 ~--------~~----l~-~~~vV~L~a~~e~l~~Rl~~  161 (250)
T 3nwj_A          137 W--------KY----MH-KGISIWLDVPLEALAHRIAA  161 (250)
T ss_dssp             H--------HH----HT-TSEEEEEECCHHHHHHHHHC
T ss_pred             H--------HH----Hh-CCcEEEEECCHHHHHHHHhh
Confidence            0        00    01 13579999999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.87  E-value=3.2e-09  Score=94.23  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhh-
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF-  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f-  135 (343)
                      .++.+|+|+||+|||||||++.|++.++ .      .+  +.....+|.+|...+..+..+++++.-.... ....+.| 
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~-~------~~--~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~-~~~~~~~~   79 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP-S------RF--RFSISCTTRNKREKETNGVDYYFVDKDDFER-KLKEGQFL   79 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT-T------TE--EECCEEECSCCCTTCCBTTTEEECCHHHHHH-HHHTTCEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc-c------ce--eeeeeecCCCCCCCCCCCcceeeCCHHHHHH-HHHcCCCE
Confidence            5789999999999999999999999875 2      12  3334556777777777777777664322211 0000111 


Q ss_pred             ---------hhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEe-CCHH
Q 019312          136 ---------RLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVD-SSLQ  205 (343)
Q Consensus       136 ---------~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~-~~re  205 (343)
                               .......+.++.+.|+..|+.+.. --...+...        +            ...+..+++|. ++.+
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~-~~~~~l~~~--------~------------~~~~~~~i~l~~~s~e  138 (204)
T 2qor_A           80 EFDKYANNFYGTLKSEYDLAVGEGKICLFEMNI-NGVKQLKES--------K------------HIQDGIYIFVKPPSID  138 (204)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCH-HHHHHHHHC--------S------------SCSCCEEEEEECSCHH
T ss_pred             EeHHhCCCeecCCHHHHHHHHHcCCeEEEEECH-HHHHHHHHh--------c------------CCCCeEEEEEcCCCHH
Confidence                     111224567777788876665421 111222100        0            00134678887 8999


Q ss_pred             HHHHHHHHHH
Q 019312          206 LLYDYLNKRV  215 (343)
Q Consensus       206 ~L~~RI~~Rv  215 (343)
                      +|.+|+.+|-
T Consensus       139 ~l~~Rl~~R~  148 (204)
T 2qor_A          139 ILLGRLKNRN  148 (204)
T ss_dssp             HHHHHHHTCT
T ss_pred             HHHHHHHHcC
Confidence            9999998774

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.85  E-value=1.4e-09  Score=94.87  Aligned_cols=91  Identities=14%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .++++++|+||||||||||++.|++.+++.         .+..+..+|.+|...+..++.|++++...... .+....|.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~---------~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~-~~~~~~~l   72 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR---------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ-DISNNEYL   72 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTT---------EECCCCEECSCC---CCBTTTBEECCHHHHHH-HHHTTCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCcc---------EEEeeeccCCCCCccccCCCeeEEeCHHHHHH-HHHcCCce
Confidence            457899999999999999999999987521         13344567888887788888888765433222 11111222


Q ss_pred             h----------hhhHHHHHHHhcCCeeEEEc
Q 019312          137 L----------QADNAISDIISRKKTPLLVG  157 (343)
Q Consensus       137 ~----------~a~~~i~~i~~~g~~pIlvG  157 (343)
                      .          .....+.++.+.|+.+|+..
T Consensus        73 ~~~~~~~n~yg~~~~~i~~~l~~g~~vil~i  103 (180)
T 1kgd_A           73 EYGSHEDAMYGTKLETIRKIHEQGLIAILDV  103 (180)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEcCccccccHHHHHHHHHCCCeEEEEE
Confidence            1          12356778888999888863

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.84  E-value=2.9e-09  Score=97.92  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+++|.|+.. ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~y~~~-~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   65 (243)
T 1mv5_A            2 LSARHVDFAYDDS-EQILRDISFEA----------QPNSIIAFAGPSGGGKSTIFSLLERFYQPT----AGEI-TIDGQP   65 (243)
T ss_dssp             EEEEEEEECSSSS-SCSEEEEEEEE----------CTTEEEEEECCTTSSHHHHHHHHTTSSCCS----BSCE-EETTEE
T ss_pred             EEEEEEEEEeCCC-CceEEEeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCEE
Confidence            5678899999533 34899999998          899999999999999999999999998854    7888 478888


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        66 ~~~   68 (243)
T 1mv5_A           66 IDN   68 (243)
T ss_dssp             STT
T ss_pred             hhh
Confidence            754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.84  E-value=1.2e-09  Score=100.25  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             eeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+.+.  ..+|+++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g   66 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNI----------KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT----EGEV-YIDN   66 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----ceEE-EECC
Confidence            56788999887543  24899999998          899999999999999999999999998864    6888 4788


Q ss_pred             ccccCC
Q 019312          100 LDITTN  105 (343)
Q Consensus       100 l~I~T~  105 (343)
                      .++...
T Consensus        67 ~~~~~~   72 (235)
T 3tif_A           67 IKTNDL   72 (235)
T ss_dssp             EECTTC
T ss_pred             EEcccC
Confidence            887543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.84  E-value=1.5e-09  Score=102.09  Aligned_cols=67  Identities=19%  Similarity=0.265  Sum_probs=58.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|+...+ +|+++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus         7 ~l~i~~ls~~y~~~~~-~L~~isl~i----------~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~----~G~I-~~~G~   70 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTH-ALKGINMNI----------KRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRI-LFDNK   70 (275)
T ss_dssp             EEEEEEEEEECTTSCE-EEEEEEEEE----------ETTSEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred             EEEEEEEEEEECCCCe-EEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CeEE-EECCE
Confidence            5789999999975543 899999998          899999999999999999999999998864    6888 47888


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        71 ~i~   73 (275)
T 3gfo_A           71 PID   73 (275)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.82  E-value=2e-09  Score=120.46  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CCCCccceeecccCCcCCcccc-cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312           15 HHQQQQHYSSFYSPFLHPKRRR-SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK   93 (343)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds   93 (343)
                      ..|..+.|++.+|+|.||.+.. ++|+++++++          ++|+.++|+||||||||||+..|.+.++|.    .|+
T Consensus      1070 ~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I----------~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~----~G~ 1135 (1321)
T 4f4c_A         1070 KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSV----------EPGQTLALVGPSGCGKSTVVALLERFYDTL----GGE 1135 (1321)
T ss_dssp             CCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEE----------CTTCEEEEECSTTSSTTSHHHHHTTSSCCS----SSE
T ss_pred             CCCCCCeEEEEEEEEeCCCCCCCccccceeEEE----------CCCCEEEEECCCCChHHHHHHHHhcCccCC----CCE
Confidence            3455689999999999997653 5999999998          999999999999999999999999999865    788


Q ss_pred             eEEEecccccCC
Q 019312           94 MQVYKGLDITTN  105 (343)
Q Consensus        94 ~qvy~gl~I~T~  105 (343)
                      + .+.|.||.+-
T Consensus      1136 I-~iDG~di~~i 1146 (1321)
T 4f4c_A         1136 I-FIDGSEIKTL 1146 (1321)
T ss_dssp             E-EETTEETTTB
T ss_pred             E-EECCEEhhhC
Confidence            8 5899998643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.81  E-value=2.4e-09  Score=92.79  Aligned_cols=112  Identities=17%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL  137 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~  137 (343)
                      .++.|+|+||+||||||+++.|++.++ ..+|+.|.+  ..            +..+.+     ..+..+ .+....|..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~-~~~i~~d~~--~~------------~~~g~~-----~~~~~~-~~g~~~~~~   62 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-RILYDSDKE--IE------------KRTGAD-----IAWIFE-MEGEAGFRR   62 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH--HH------------HHHTSC-----HHHHHH-HHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHH--HH------------HHcCCC-----hhhHHH-HhCHHHHHH
Confidence            357899999999999999999999998 888888877  11            111111     001111 233456777


Q ss_pred             hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHH
Q 019312          138 QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYL  211 (343)
Q Consensus       138 ~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI  211 (343)
                      ...+.+.++.+.....|.+||+..+         ++..   ..         .+.-...+++|++|.+++.+|+
T Consensus        63 ~~~~~~~~~~~~~~~vi~~gg~~~~---------~~~~---~~---------~l~~~~~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           63 REREMIEALCKLDNIILATGGGVVL---------DEKN---RQ---------QISETGVVIYLTASIDTQLKRI  115 (185)
T ss_dssp             HHHHHHHHHHHSSSCEEECCTTGGG---------SHHH---HH---------HHHHHEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEecCCceec---------CHHH---HH---------HHHhCCcEEEEECCHHHHHHHH
Confidence            7777888887777777777775433         1110   00         0011236789999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.81  E-value=1.8e-09  Score=97.99  Aligned_cols=71  Identities=24%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             CCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           15 HHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      |+-...-+++.++++.|..   .+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++
T Consensus         4 ~~~~~~~l~~~~ls~~y~~---~il~~vsl~i----------~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~----~G~I   66 (214)
T 1sgw_A            4 HHHHGSKLEIRDLSVGYDK---PVLERITMTI----------EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEI   66 (214)
T ss_dssp             -----CEEEEEEEEEESSS---EEEEEEEEEE----------ETTCCEEEECCTTSSHHHHHHHHTTSSCCS----EEEE
T ss_pred             ccCCCceEEEEEEEEEeCC---eEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CeEE
Confidence            3334457889999999964   5899999998          899999999999999999999999998754    6888


Q ss_pred             EEEeccccc
Q 019312           95 QVYKGLDIT  103 (343)
Q Consensus        95 qvy~gl~I~  103 (343)
                      . +.|.++.
T Consensus        67 ~-~~g~~~~   74 (214)
T 1sgw_A           67 I-YNGVPIT   74 (214)
T ss_dssp             E-ETTEEGG
T ss_pred             E-ECCEEhh
Confidence            4 7777764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.81  E-value=2.8e-09  Score=103.84  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             CCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           12 ACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      .|.|+-....+++.++++.|+.. ..+++++++++          .+|++++|+||||||||||++.|++...|.    .
T Consensus         5 ~~~~~~~~~~l~~~~l~~~y~g~-~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~   69 (355)
T 1z47_A            5 HHHHHHGSMTIEFVGVEKIYPGG-ARSVRGVSFQI----------REGEMVGLLGPSGSGKTTILRLIAGLERPT----K   69 (355)
T ss_dssp             ------CCEEEEEEEEEECCTTS-TTCEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTSSCCS----E
T ss_pred             cccccCCCceEEEEEEEEEEcCC-CEEEeeeEEEE----------CCCCEEEEECCCCCcHHHHHHHHhCCCCCC----c
Confidence            34455566789999999999522 34899999998          899999999999999999999999998854    6


Q ss_pred             CceEEEecccccC
Q 019312           92 DKMQVYKGLDITT  104 (343)
Q Consensus        92 Ds~qvy~gl~I~T  104 (343)
                      |++ .+.|.++..
T Consensus        70 G~I-~i~g~~i~~   81 (355)
T 1z47_A           70 GDV-WIGGKRVTD   81 (355)
T ss_dssp             EEE-EETTEECTT
T ss_pred             cEE-EECCEECCc
Confidence            888 478888754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.79  E-value=3.2e-09  Score=109.51  Aligned_cols=74  Identities=22%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      +....+++.+|+|.|+.+.+.+|+++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .
T Consensus       337 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i----------~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~----~G~i-~  401 (587)
T 3qf4_A          337 NVEGSVSFENVEFRYFENTDPVLSGVNFSV----------KPGSLVAVLGETGSGKSTLMNLIPRLIDPE----RGRV-E  401 (587)
T ss_dssp             CCCCCEEEEEEEECSSSSSCCSEEEEEEEE----------CTTCEEEEECSSSSSHHHHHHTTTTSSCCS----EEEE-E
T ss_pred             CCCCcEEEEEEEEEcCCCCCcceeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCccCC----CcEE-E
Confidence            345789999999999877667999999998          899999999999999999999999999865    6888 4


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.|+...
T Consensus       402 i~g~~i~~~  410 (587)
T 3qf4_A          402 VDELDVRTV  410 (587)
T ss_dssp             ESSSBGGGB
T ss_pred             ECCEEcccC
Confidence            788888643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.78  E-value=3.4e-09  Score=109.11  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      +....+++.+|+|.|+...+.+|+++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .
T Consensus       335 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~  399 (578)
T 4a82_A          335 IKQGRIDIDHVSFQYNDNEAPILKDINLSI----------EKGETVAFVGMSGGGKSTLINLIPRFYDVT----SGQI-L  399 (578)
T ss_dssp             CCSCCEEEEEEEECSCSSSCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHTTTTTSSCCS----EEEE-E
T ss_pred             CCCCeEEEEEEEEEcCCCCCcceeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHhcCCCCC----CcEE-E
Confidence            345789999999999976666999999998          899999999999999999999999999865    6888 4


Q ss_pred             EecccccC
Q 019312           97 YKGLDITT  104 (343)
Q Consensus        97 y~gl~I~T  104 (343)
                      +.|.++..
T Consensus       400 ~~g~~~~~  407 (578)
T 4a82_A          400 IDGHNIKD  407 (578)
T ss_dssp             ETTEEGGG
T ss_pred             ECCEEhhh
Confidence            88888854

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.76  E-value=4e-09  Score=98.55  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus        24 ~l~i~~l~~~y~~--~~vL~~vsl~i----------~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g~   86 (263)
T 2olj_A           24 MIDVHQLKKSFGS--LEVLKGINVHI----------REGEVVVVIGPSGSGKSTFLRCLNLLEDFD----EGEI-IIDGI   86 (263)
T ss_dssp             SEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred             eEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEEcCCCCcHHHHHHHHHcCCCCC----CcEE-EECCE
Confidence            3889999999953  34899999998          899999999999999999999999998854    6888 47888


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        87 ~i~   89 (263)
T 2olj_A           87 NLK   89 (263)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.76  E-value=5.9e-09  Score=94.72  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCC-------c
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDD-------V  128 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~-------~  128 (343)
                      .++|++++|+||||||||||++.|++.+++      +.+  .....++|..+...++.++.|++.+...+..       .
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p------~~~--~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~   84 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL------YDT--QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL   84 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCT------TTE--EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCC------Cce--EEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH
Confidence            378999999999999999999999998863      111  2244555555555566677766554221111       0


Q ss_pred             -ccCh-hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312          129 -EFTP-DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL  206 (343)
Q Consensus       129 -~~s~-~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~  206 (343)
                       .... ..+.....+.+.++.+.|++.|+-              +|+....        .+....+....+|++..+.++
T Consensus        85 E~~~~~~~~yg~~~~~v~~~l~~G~illLD--------------LD~~~~~--------~i~~~l~~~~tI~i~th~~~~  142 (219)
T 1s96_A           85 EHAEVFGNYYGTSREAIEQVLATGVDVFLD--------------IDWQGAQ--------QIRQKMPHARSIFILPPSKIE  142 (219)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHTTTCEEEEE--------------CCHHHHH--------HHHHHCTTCEEEEEECSSHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHHhcCCeEEEE--------------ECHHHHH--------HHHHHccCCEEEEEECCCHHH
Confidence             0000 111111234567777778765554              2443210        000011123456777888999


Q ss_pred             HHHHHHHH
Q 019312          207 LYDYLNKR  214 (343)
Q Consensus       207 L~~RI~~R  214 (343)
                      |.+||..|
T Consensus       143 l~~Rl~~r  150 (219)
T 1s96_A          143 LDRRLRGR  150 (219)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHc
Confidence            98877433

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.76  E-value=4.1e-09  Score=98.54  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+|+++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus        11 ~l~~~~l~~~~~~--~~vL~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~I-~~~g~   73 (266)
T 4g1u_C           11 LLEASHLHYHVQQ--QALINDVSLHI----------ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS----HGEC-HLLGQ   73 (266)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECCTTSCHHHHHHHHTSSSCCS----SCEE-EETTE
T ss_pred             eEEEEeEEEEeCC--eeEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence            5788999999863  34899999998          899999999999999999999999999865    7888 48898


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        74 ~~~~~   78 (266)
T 4g1u_C           74 NLNSW   78 (266)
T ss_dssp             ETTTS
T ss_pred             ECCcC
Confidence            88644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.76  E-value=3.9e-09  Score=98.19  Aligned_cols=67  Identities=15%  Similarity=0.113  Sum_probs=57.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ..+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|
T Consensus        14 ~~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g   76 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK--KEILKGISFEI----------EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIV-TVFG   76 (256)
T ss_dssp             CCEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             CeEEEEEEEEEECC--EEEEEeeEEEE----------cCCcEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECC
Confidence            56889999999953  34899999998          899999999999999999999999998754    6888 4778


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        77 ~~~~   80 (256)
T 1vpl_A           77 KNVV   80 (256)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7775

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.75  E-value=4.9e-09  Score=95.71  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=54.2

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|+.+...+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i~-~~g   69 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKI----------ERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIK-HSG   69 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEEE-ECS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----ccEEE-ECC
Confidence            57899999999754445899999998          899999999999999999999999998854    56663 444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.75  E-value=3.4e-09  Score=96.39  Aligned_cols=66  Identities=23%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         5 l~~~~l~~~y~~--~~~l~~vsl~i----------~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   67 (224)
T 2pcj_A            5 LRAENIKKVIRG--YEILKGISLSV----------KKGEFVSIIGASGSGKSTLLYILGLLDAPT----EGKV-FLEGKE   67 (224)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEEECTTSCHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred             EEEEeEEEEECC--EeeEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence            678899998864  34899999998          899999999999999999999999998854    6888 477887


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        68 ~~~   70 (224)
T 2pcj_A           68 VDY   70 (224)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.75  E-value=4.5e-09  Score=102.81  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=61.1

Q ss_pred             cceeecccCCcCCccc--ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE
Q 019312           20 QHYSSFYSPFLHPKRR--RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY   97 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy   97 (343)
                      .-+++.++++.|....  ..+|+++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i----------~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~----~G~I-~i   87 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHV----------PAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSV-LV   87 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EE
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEE----------cCCCEEEEEcCCCchHHHHHHHHhcCCCCC----ceEE-EE
Confidence            4588999999997532  34899999998          899999999999999999999999998864    6888 58


Q ss_pred             ecccccCCC
Q 019312           98 KGLDITTNK  106 (343)
Q Consensus        98 ~gl~I~T~k  106 (343)
                      .|.++....
T Consensus        88 ~G~~i~~~~   96 (366)
T 3tui_C           88 DGQELTTLS   96 (366)
T ss_dssp             TTEECSSCC
T ss_pred             CCEECCcCC
Confidence            899986543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.74  E-value=9.2e-09  Score=100.37  Aligned_cols=66  Identities=20%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+|+++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         4 ~l~i~~ls~~y~~--~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~G~I-~i~G~   66 (359)
T 3fvq_A            4 ALHIGHLSKSFQN--TPVLNDISLSL----------DPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEI-SLSGK   66 (359)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             EEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCchHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence            4788899999853  34899999998          899999999999999999999999998864    6888 48888


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        67 ~i~   69 (359)
T 3fvq_A           67 TIF   69 (359)
T ss_dssp             EEE
T ss_pred             ECc
Confidence            884

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.74  E-value=4.5e-09  Score=97.93  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus         6 ~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~----~G~i-~~~g~   68 (262)
T 1b0u_A            6 KLHVIDLHKRYGG--HEVLKGVSLQA----------RAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAI-IVNGQ   68 (262)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred             eEEEeeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CcEE-EECCE
Confidence            4788999999953  34899999998          899999999999999999999999998854    6888 47788


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        69 ~~~   71 (262)
T 1b0u_A           69 NIN   71 (262)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            774

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.73  E-value=6.9e-09  Score=107.22  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      +...++++.+|+|.|+...+ +++++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .
T Consensus       350 ~~~~~i~~~~v~~~y~~~~~-~l~~isl~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~  413 (598)
T 3qf4_B          350 EVRGEIEFKNVWFSYDKKKP-VLKDITFHI----------KPGQKVALVGPTGSGKTTIVNLLMRFYDVD----RGQI-L  413 (598)
T ss_dssp             SCCCCEEEEEEECCSSSSSC-SCCSEEEEC----------CTTCEEEEECCTTSSTTHHHHHHTTSSCCS----EEEE-E
T ss_pred             CCCCeEEEEEEEEECCCCCc-cccceEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCcCCC----CeEE-E
Confidence            34578999999999986544 899999998          899999999999999999999999999865    6888 4


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.|+...
T Consensus       414 ~~g~~i~~~  422 (598)
T 3qf4_B          414 VDGIDIRKI  422 (598)
T ss_dssp             ETTEEGGGS
T ss_pred             ECCEEhhhC
Confidence            888888643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.73  E-value=1.1e-08  Score=105.24  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+.+...+++++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .+.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i----------~~G~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i-~~~  403 (582)
T 3b5x_A          339 NGEVDVKDVTFTYQGKEKPALSHVSFSI----------PQGKTVALVGRSGSGKSTIANLFTRFYDVD----SGSI-CLD  403 (582)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CCEE-EEC
Confidence            4679999999999864345899999998          899999999999999999999999999865    6888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       404 g~~~~~  409 (582)
T 3b5x_A          404 GHDVRD  409 (582)
T ss_pred             CEEhhh
Confidence            888754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.72  E-value=5.1e-09  Score=96.21  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus         6 ~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~   68 (240)
T 1ji0_A            6 VLEVQSLHVYYGA--IHAIKGIDLKV----------PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKI-IFNGQ   68 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred             eEEEEeEEEEECC--eeEEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CceE-EECCE
Confidence            3788999999964  34899999998          899999999999999999999999998754    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        69 ~~~   71 (240)
T 1ji0_A           69 DIT   71 (240)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            774

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.70  E-value=8.1e-09  Score=101.80  Aligned_cols=73  Identities=12%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      |....+++.++++.|+.+...+|+++++++          .+|++++|+||||||||||++.|++..+ .    .|++ .
T Consensus        15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~----~G~I-~   78 (390)
T 3gd7_A           15 PSGGQMTVKDLTAKYTEGGNAILENISFSI----------SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T----EGEI-Q   78 (390)
T ss_dssp             SSSCCEEEEEEEEESSSSSCCSEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHHTCSE-E----EEEE-E
T ss_pred             CCCCeEEEEEEEEEecCCCeEEeeceeEEE----------cCCCEEEEECCCCChHHHHHHHHhCCCC-C----CeEE-E
Confidence            445789999999999865556899999998          8999999999999999999999999865 3    6888 4


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.++...
T Consensus        79 i~G~~i~~~   87 (390)
T 3gd7_A           79 IDGVSWDSI   87 (390)
T ss_dssp             ESSCBTTSS
T ss_pred             ECCEECCcC
Confidence            889888644

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.70  E-value=5.3e-09  Score=95.99  Aligned_cols=64  Identities=19%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .+++.++++.|......+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.|
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~I~-~~g   66 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSI----------PEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVA-IKG   66 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTCSEEE----EEEEE-ECS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CceEE-ECC
Confidence            37888999999743345899999998          899999999999999999999999988743    56663 444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.70  E-value=7.3e-09  Score=96.67  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             eeecccCCcCCccc---ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           22 YSSFYSPFLHPKRR---RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      +++.++++.|....   ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++. +.
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~G~I~-~~   67 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVI----------NEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVL-YD   67 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEEE-ET
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CcEEE-EC
Confidence            57788999886222   34899999998          899999999999999999999999998754    67884 77


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        68 g~~~~   72 (266)
T 2yz2_A           68 GERKK   72 (266)
T ss_dssp             TEECC
T ss_pred             CEECc
Confidence            77764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.70  E-value=1.3e-08  Score=104.78  Aligned_cols=71  Identities=18%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ...+++.+|+|.|+.+...+++++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .+.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i----------~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i-~~~  403 (582)
T 3b60_A          339 TGDLEFRNVTFTYPGREVPALRNINLKI----------PAGKTVALVGRSGSGKSTIASLITRFYDID----EGHI-LMD  403 (582)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEE----------CTTCEEEEEECTTSSHHHHHHHHTTTTCCS----EEEE-EET
T ss_pred             CCcEEEEEEEEEcCCCCCccccceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhhccCCC----CCeE-EEC
Confidence            4679999999999854344899999998          899999999999999999999999998865    6888 478


Q ss_pred             cccccC
Q 019312           99 GLDITT  104 (343)
Q Consensus        99 gl~I~T  104 (343)
                      |.++..
T Consensus       404 g~~~~~  409 (582)
T 3b60_A          404 GHDLRE  409 (582)
T ss_dssp             TEETTT
T ss_pred             CEEccc
Confidence            888753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.70  E-value=5.5e-09  Score=96.93  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=56.6

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus         7 ~l~i~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~----~G~i-~~~g~   69 (257)
T 1g6h_A            7 ILRTENIVKYFGE--FKALDGVSISV----------NKGDVTLIIGPNGSGKSTLINVITGFLKAD----EGRV-YFENK   69 (257)
T ss_dssp             EEEEEEEEEEETT--EEEEEEECCEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTE
T ss_pred             EEEEeeeEEEECC--EeeEeeeEEEE----------eCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE-EECCE
Confidence            3788999999963  34899999998          899999999999999999999999998854    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        70 ~~~   72 (257)
T 1g6h_A           70 DIT   72 (257)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            774

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.68  E-value=1.1e-08  Score=95.11  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             cceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      ..+++.+++|.|.... ..+++++++++          .+|++++|+||||||||||++.|++.+++     .|++ .+.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i----------~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----~G~I-~i~   79 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFI----------PSGTTCALVGHTGSGKSTIAKLLYRFYDA-----EGDI-KIG   79 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCC-----EEEE-EET
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEE----------CCCCEEEEECCCCCCHHHHHHHHhccCCC-----CeEE-EEC
Confidence            3589999999997542 34899999998          89999999999999999999999998762     4888 478


Q ss_pred             ccccc
Q 019312           99 GLDIT  103 (343)
Q Consensus        99 gl~I~  103 (343)
                      |.++.
T Consensus        80 g~~i~   84 (260)
T 2ghi_A           80 GKNVN   84 (260)
T ss_dssp             TEEGG
T ss_pred             CEEhh
Confidence            88774

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.67  E-value=5e-08  Score=83.72  Aligned_cols=37  Identities=24%  Similarity=0.594  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+++|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhC-cEEEeCccc
Confidence            4578999999999999999999999887 666766655

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.67  E-value=9.2e-09  Score=96.83  Aligned_cols=66  Identities=15%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      -+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.
T Consensus        21 ~l~~~~l~~~y~~--~~vL~~isl~i----------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~----~G~I-~~~g~   83 (279)
T 2ihy_A           21 LIQLDQIGRMKQG--KTILKKISWQI----------AKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTV-NLFGK   83 (279)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTB
T ss_pred             eEEEEeEEEEECC--EEEEEeeeEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCCC----CeEE-EECCE
Confidence            4889999999964  34899999998          899999999999999999999999998864    6888 47787


Q ss_pred             ccc
Q 019312          101 DIT  103 (343)
Q Consensus       101 ~I~  103 (343)
                      ++.
T Consensus        84 ~~~   86 (279)
T 2ihy_A           84 MPG   86 (279)
T ss_dssp             CCC
T ss_pred             Ecc
Confidence            764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.67  E-value=1.3e-08  Score=100.09  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=59.3

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+|+++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         3 ~l~~~~l~~~yg~--~~~L~~vsl~i----------~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~----~G~I-~i~G~   65 (381)
T 3rlf_A            3 SVQLQNVTKAWGE--VVVSKDINLDI----------HEGEFVVFVGPSGCGKSTLLRMIAGLETIT----SGDL-FIGEK   65 (381)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             EEEEEeEEEEECC--EEEEeeeEEEE----------CCCCEEEEEcCCCchHHHHHHHHHcCCCCC----CeEE-EECCE
Confidence            4788899999963  34899999998          899999999999999999999999999865    6888 47898


Q ss_pred             cccCCCC
Q 019312          101 DITTNKI  107 (343)
Q Consensus       101 ~I~T~kp  107 (343)
                      ++....+
T Consensus        66 ~~~~~~~   72 (381)
T 3rlf_A           66 RMNDTPP   72 (381)
T ss_dssp             ECTTCCG
T ss_pred             ECCCCCH
Confidence            8865433

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.66  E-value=1.9e-08  Score=92.65  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..    .++++++++          .+ ++++|+||||||||||++.|++.+.|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~y~~----~l~~isl~i----------~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i-~~~g~~   61 (240)
T 2onk_A            2 FLKVRAEKRLGN----FRLNVDFEM----------GR-DYCVLLGPTGAGKSVFLELIAGIVKPD----RGEV-RLNGAD   61 (240)
T ss_dssp             CEEEEEEEEETT----EEEEEEEEE----------CS-SEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEeCC----EEeeeEEEE----------CC-EEEEEECCCCCCHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence            467788888852    499999998          88 999999999999999999999998754    6888 478888


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        62 ~~~   64 (240)
T 2onk_A           62 ITP   64 (240)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.66  E-value=1.9e-08  Score=112.73  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             CCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +..+++++.+|+|.||... ..+|+++++++          ++|+.++|+||||||||||++.|.+.++|.    .|++ 
T Consensus       411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i----------~~G~~vaivG~sGsGKSTll~ll~~~~~~~----~G~I-  475 (1321)
T 4f4c_A          411 KIKGDITVENVHFTYPSRPDVPILRGMNLRV----------NAGQTVALVGSSGCGKSTIISLLLRYYDVL----KGKI-  475 (1321)
T ss_dssp             CCCCCEEEEEEEECCSSSTTSCSEEEEEEEE----------CTTCEEEEEECSSSCHHHHHHHHTTSSCCS----EEEE-
T ss_pred             CCCCcEEEEEeeeeCCCCCCCceeeceEEee----------cCCcEEEEEecCCCcHHHHHHHhccccccc----cCcc-
Confidence            4457899999999999754 45899999998          899999999999999999999999999865    6888 


Q ss_pred             EEecccccCC
Q 019312           96 VYKGLDITTN  105 (343)
Q Consensus        96 vy~gl~I~T~  105 (343)
                      .+.|.||..-
T Consensus       476 ~idG~~i~~~  485 (1321)
T 4f4c_A          476 TIDGVDVRDI  485 (1321)
T ss_dssp             EETTEETTTS
T ss_pred             cCCCccchhc
Confidence            4788887543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.65  E-value=1.8e-08  Score=98.41  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=57.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.+
T Consensus         4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~   66 (362)
T 2it1_A            4 IKLENIVKKFGN--FTALNNINLKI----------KDGEFMALLGPSGSGKSTLLYTIAGIYKPT----SGKI-YFDEKD   66 (362)
T ss_dssp             EEEEEEEEESSS--SEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEeEEEEECC--EEEEEeeEEEE----------CCCCEEEEECCCCchHHHHHHHHhcCCCCC----ceEE-EECCEE
Confidence            678899999853  34899999998          899999999999999999999999998854    6888 478888


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        67 i~~~   70 (362)
T 2it1_A           67 VTEL   70 (362)
T ss_dssp             CTTS
T ss_pred             CCcC
Confidence            8643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.64  E-value=9.5e-08  Score=84.13  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg-~~~i~~d~~   52 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACG-YPFIEGDAL   52 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHT-CCEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CEEEeCCcC
Confidence            357999999999999999999999998 788888776

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.63  E-value=1e-08  Score=95.85  Aligned_cols=70  Identities=24%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      .-+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++... . -.+.|++ .+.|
T Consensus        19 ~~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~-~p~~G~I-~~~g   83 (267)
T 2zu0_C           19 HMLSIKDLHVSVED--KAILRGLSLDV----------HPGEVHAIMGPNGSGKSTLSATLAGRED-Y-EVTGGTV-EFKG   83 (267)
T ss_dssp             -CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTCTT-C-EEEEEEE-EETT
T ss_pred             ceEEEEeEEEEECC--EEEEEeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CCCCeEE-EECC
Confidence            45899999999953  34899999998          8999999999999999999999999742 0 0126778 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        84 ~~i~~   88 (267)
T 2zu0_C           84 KDLLA   88 (267)
T ss_dssp             EEGGG
T ss_pred             EECCc
Confidence            87754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.62  E-value=2.1e-08  Score=97.87  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.+
T Consensus         4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~   66 (359)
T 2yyz_A            4 IRVVNLKKYFGK--VKAVDGVSFEV----------KDGEFVALLGPSGCGKTTTLLMLAGIYKPT----SGEI-YFDDVL   66 (359)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEECC--EEEEeeeEEEE----------cCCCEEEEEcCCCchHHHHHHHHHCCCCCC----ccEE-EECCEE
Confidence            678889988853  34899999998          899999999999999999999999998854    6888 488888


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        67 i~~~   70 (359)
T 2yyz_A           67 VNDI   70 (359)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.61  E-value=1.2e-08  Score=94.17  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh--cCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR--FFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~--~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++.  +.|    +.|++ .+.|
T Consensus         4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p----~~G~I-~~~g   66 (250)
T 2d2e_A            4 LEIRDLWASIDG--ETILKGVNLVV----------PKGEVHALMGPNGAGKSTLGKILAGDPEYTV----ERGEI-LLDG   66 (250)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTCTTCEE----EEEEE-EETT
T ss_pred             EEEEeEEEEECC--EEEEeceEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC----CceEE-EECC
Confidence            678899999964  34899999998          89999999999999999999999997  332    26788 4778


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        67 ~~~~~   71 (250)
T 2d2e_A           67 ENILE   71 (250)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            88753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.60  E-value=2.3e-08  Score=97.13  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  . +++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.+
T Consensus         2 l~~~~l~~~y~~--~-~l~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~~~g~~   63 (348)
T 3d31_A            2 IEIESLSRKWKN--F-SLDNLSLKV----------ESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRI-LLDGKD   63 (348)
T ss_dssp             EEEEEEEEECSS--C-EEEEEEEEE----------CTTCEEEEECCCTHHHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEECC--E-EEeeeEEEE----------cCCCEEEEECCCCccHHHHHHHHHcCCCCC----CcEE-EECCEE
Confidence            567888888853  3 899999998          899999999999999999999999998854    6888 478888


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        64 i~~   66 (348)
T 3d31_A           64 VTD   66 (348)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.60  E-value=2.3e-08  Score=97.92  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=58.0

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus        11 ~l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~   73 (372)
T 1v43_A           11 EVKLENLTKRFGN--FTAVNKLNLTI----------KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRI-YFGDR   73 (372)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCC----ceEE-EECCE
Confidence            4788999999953  34899999998          899999999999999999999999998854    6888 47888


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        74 ~i~~~   78 (372)
T 1v43_A           74 DVTYL   78 (372)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            88543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.58  E-value=4.4e-08  Score=88.26  Aligned_cols=64  Identities=22%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccC
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVP  116 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~  116 (343)
                      +.|+++++++          .+|++++|+||||||||||++.|++.++       |.+. + |.++.+..+...++.++.
T Consensus        11 ~~l~~isl~i----------~~G~~~~lvGpsGsGKSTLl~~L~g~~p-------G~i~-~-g~~~~~~~~~~~~~~~i~   71 (218)
T 1z6g_A           11 SSGLVPRGSM----------NNIYPLVICGPSGVGKGTLIKKLLNEFP-------NYFY-F-SVSCTTRKKREKEKEGVD   71 (218)
T ss_dssp             ---------------------CCCCEEEECSTTSSHHHHHHHHHHHST-------TTEE-E-CCCEECSCCCSSCCBTTT
T ss_pred             ccccCCceec----------CCCCEEEEECCCCCCHHHHHHHHHhhCC-------CcEE-E-eecccCCCCCcccccCCe
Confidence            4678999997          8899999999999999999999999873       4553 4 777777655544555655


Q ss_pred             ccc
Q 019312          117 HHL  119 (343)
Q Consensus       117 h~l  119 (343)
                      +.+
T Consensus        72 ~~~   74 (218)
T 1z6g_A           72 YYF   74 (218)
T ss_dssp             BEE
T ss_pred             EEE
Confidence            443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.57  E-value=9.2e-08  Score=84.43  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++++++|+||+|||||||++.|++.++ ..+++.|.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~~   63 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAF   63 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhC-CeEEccccc
Confidence            5689999999999999999999999986 555555544

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.57  E-value=2.5e-08  Score=97.07  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|......+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.+
T Consensus         4 l~i~~l~~~y~~~~~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~   68 (353)
T 1oxx_K            4 IIVKNVSKVFKKGKVVALDNVNINI----------ENGERFGILGPSGAGKTTFMRIIAGLDVPS----TGEL-YFDDRL   68 (353)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEE----------CTTCEEEEECSCHHHHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEeEEEEECCEeeeeEeceEEEE----------CCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEE-EECCEE
Confidence            6788899888532111899999998          899999999999999999999999998854    6888 478888


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        69 i~~   71 (353)
T 1oxx_K           69 VAS   71 (353)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.56  E-value=3e-07  Score=90.86  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ..+.+|+|+|++||||||+++.|++.++ ..+|+.|.+.                                      .|.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~--------------------------------------~~~  296 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG-YVHVNRDTLG--------------------------------------SWQ  296 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGT-CEECCGGGSC--------------------------------------SHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcC-cEEEccchHH--------------------------------------HHH
Confidence            5578999999999999999999999987 7777776541                                      011


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      . ....+.+....|+. ||+.+++........         +.      .+.....+.+.+++|+++.+++.+|+..|..
T Consensus       297 ~-~~~~~~~~l~~g~~-vIiD~~~~~~~~r~~---------~~------~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          297 R-CVSSCQAALRQGKR-VVIDNTNPDVPSRAR---------YI------QCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             H-HHHHHHHHHHTTCC-EEEESCCCSHHHHHH---------HH------HHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhcCCc-EEEeCCCCCHHHHHH---------HH------HHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence            1 22233344455664 556666543211100         00      0000113456789999999999999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.56  E-value=2.8e-08  Score=97.34  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=56.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.+
T Consensus         4 l~~~~l~~~y~~--~~vl~~vsl~i----------~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~----~G~I-~i~g~~   66 (372)
T 1g29_1            4 VRLVDVWKVFGE--VTAVREMSLEV----------KDGEFMILLGPSGCGKTTTLRMIAGLEEPS----RGQI-YIGDKL   66 (372)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEeEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCcHHHHHHHHHHcCCCCC----ccEE-EECCEE
Confidence            678889988853  34899999998          899999999999999999999999998854    6888 478888


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        67 ~~~   69 (372)
T 1g29_1           67 VAD   69 (372)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.56  E-value=4.6e-08  Score=109.28  Aligned_cols=73  Identities=22%  Similarity=0.232  Sum_probs=63.1

Q ss_pred             CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      ..+.+++.+|+|.|+.+. ..+|+++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .
T Consensus       384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i----------~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~----~G~i-~  448 (1284)
T 3g5u_A          384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKV----------KSGQTVALVGNSGCGKSTTVQLMQRLYDPL----DGMV-S  448 (1284)
T ss_dssp             CCCCEEEEEEEECCSSTTSCCSEEEEEEEE----------CTTCEEEEECCSSSSHHHHHHHTTTSSCCS----EEEE-E
T ss_pred             CCCeEEEEEEEEEcCCCCCCcceecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE-E
Confidence            457899999999998653 45999999998          899999999999999999999999999864    6888 4


Q ss_pred             EecccccCC
Q 019312           97 YKGLDITTN  105 (343)
Q Consensus        97 y~gl~I~T~  105 (343)
                      +.|.|+...
T Consensus       449 i~g~~i~~~  457 (1284)
T 3g5u_A          449 IDGQDIRTI  457 (1284)
T ss_dssp             ETTEEGGGS
T ss_pred             ECCEEHHhC
Confidence            788888654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.55  E-value=1.5e-07  Score=82.43  Aligned_cols=29  Identities=24%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|.+++|+||+||||||+++.|++.+.
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            36789999999999999999999999884

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.51  E-value=1.2e-07  Score=80.94  Aligned_cols=116  Identities=15%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHh-hcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccC---hhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLAT-RFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFT---PDDF  135 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~-~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s---~~~f  135 (343)
                      .+|+|+|++||||||+++.|++ .++ ..+|+.|.+  ...+.   ..+ ..        ..      . .|+   ...+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~-~~~i~~d~~--r~~~~---~~~-~~--------~~------~-~~~~~~~~~~   60 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDY--RQSIM---AHE-ER--------DE------Y-KYTKKKEGIV   60 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT-EEEECHHHH--HHHHT---TSC-CG--------GG------C-CCCHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCC-cEEecHHHH--HHHhh---CCC-cc--------ch------h-hhchhhhhHH
Confidence            5899999999999999999998 565 667776644  11110   000 00        00      0 111   1223


Q ss_pred             hhhhhHHHHHHH---hcCCeeEEEcCchh---hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHH
Q 019312          136 RLQADNAISDII---SRKKTPLLVGGSNS---FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYD  209 (343)
Q Consensus       136 ~~~a~~~i~~i~---~~g~~pIlvGGT~l---Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~  209 (343)
                      .......+....   +.|+ .+|+.|+.+   |.+.+..-        +          ....+++.+++|+++.+++.+
T Consensus        61 ~~~~~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~--------~----------~~~~~~~~~i~l~~~~~~~~~  121 (181)
T 1ly1_A           61 TGMQFDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETF--------A----------KEYGWKVEHKVFDVPWTELVK  121 (181)
T ss_dssp             HHHHHHHHHHHHTSCSSCC-EEEECSCCCSHHHHHHHHHH--------H----------HHHTCEEEEEECCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCC-eEEEeCCCCCHHHHHHHHHH--------H----------HHcCCCEEEEEEeCCHHHHHH
Confidence            333445566665   5665 566666543   22222110        0          001245568899999999999


Q ss_pred             HHHHHHH
Q 019312          210 YLNKRVD  216 (343)
Q Consensus       210 RI~~Rv~  216 (343)
                      |+.+|-.
T Consensus       122 R~~~R~~  128 (181)
T 1ly1_A          122 RNSKRGT  128 (181)
T ss_dssp             HHTTCGG
T ss_pred             HHhcccc
Confidence            9988863

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.51  E-value=4e-08  Score=91.12  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +++.++++.|... ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++
T Consensus         5 l~i~~l~~~y~~~-~~vl~~isl~i----------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~I   62 (253)
T 2nq2_C            5 LSVENLGFYYQAE-NFLFQQLNFDL----------NKGDILAVLGQNGCGKSTLLDLLLGIHRPI----QGKI   62 (253)
T ss_dssp             EEEEEEEEEETTT-TEEEEEEEEEE----------ETTCEEEEECCSSSSHHHHHHHHTTSSCCS----EEEE
T ss_pred             EEEeeEEEEeCCC-CeEEEEEEEEE----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence            6788999998622 34899999998          899999999999999999999999998754    4665

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.51  E-value=8.1e-08  Score=107.32  Aligned_cols=74  Identities=19%  Similarity=0.217  Sum_probs=63.3

Q ss_pred             CCccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           17 QQQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      +..+.+++.+|+|.|+.+. ..+|+++++++          ++|++++|+||||||||||++.|++..+|.    .|++ 
T Consensus      1026 ~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i----------~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~----~G~I- 1090 (1284)
T 3g5u_A         1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEV----------KKGQTLALVGSSGCGKSTVVQLLERFYDPM----AGSV- 1090 (1284)
T ss_dssp             TTSCCEEEEEEEBCCSCGGGCCSBSSCCEEE----------CSSSEEEEECSSSTTHHHHHHHHTTSSCCS----EEEE-
T ss_pred             CCCCcEEEEEEEEECCCCCCCeeecceeEEE----------cCCCEEEEECCCCCCHHHHHHHHhcCcCCC----CCEE-
Confidence            3457899999999998653 35899999998          999999999999999999999999998865    6888 


Q ss_pred             EEecccccCC
Q 019312           96 VYKGLDITTN  105 (343)
Q Consensus        96 vy~gl~I~T~  105 (343)
                      .+.|.|+...
T Consensus      1091 ~i~g~~i~~~ 1100 (1284)
T 3g5u_A         1091 FLDGKEIKQL 1100 (1284)
T ss_dssp             ESSSSCTTSS
T ss_pred             EECCEEcccC
Confidence            4888888643

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.49  E-value=5.2e-07  Score=79.66  Aligned_cols=42  Identities=24%  Similarity=0.385  Sum_probs=36.3

Q ss_pred             CCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           53 PAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        53 ~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +..+.++.+++|+|++||||||+++.|++.++...+|+.|.+
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~   56 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF   56 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence            345678899999999999999999999998833788999987

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.49  E-value=4.6e-08  Score=91.31  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             eeecccCCcCCcc--cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKR--RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|...  ...+++++++++          . |++++|+||||||||||++.|++.+ |.    .|++ .+.|
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i----------~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~----~G~I-~~~g   64 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEV----------N-GEKVIILGPNGSGKTTLLRAISGLL-PY----SGNI-FING   64 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEE----------C-SSEEEEECCTTSSHHHHHHHHTTSS-CC----EEEE-EETT
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEE----------C-CEEEEEECCCCCCHHHHHHHHhCCC-CC----CcEE-EECC
Confidence            4677888888642  134899999998          8 9999999999999999999999988 65    6888 4778


Q ss_pred             cccc
Q 019312          100 LDIT  103 (343)
Q Consensus       100 l~I~  103 (343)
                      .++.
T Consensus        65 ~~~~   68 (263)
T 2pjz_A           65 MEVR   68 (263)
T ss_dssp             EEGG
T ss_pred             EECc
Confidence            7775

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.49  E-value=6.1e-07  Score=76.82  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|+|+|++||||||+++.|++.++
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.48  E-value=1.6e-07  Score=81.44  Aligned_cols=37  Identities=16%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~   43 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDL   43 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence            4567999999999999999999999998 788888776

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.47  E-value=3.7e-07  Score=83.92  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+||+||||||+++.|++.++ ...++.|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg-~~~~d~g~i   61 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLN-WRLLDSGAI   61 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcC-CCcCCCCce
Confidence            4578999999999999999999999988 778888888

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.47  E-value=2.5e-07  Score=81.92  Aligned_cols=56  Identities=21%  Similarity=0.164  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLG  121 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~  121 (343)
                      +++++++|+||||||||||++.|++.++ .      ..  ......+|.+|...+..++.+++++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~-~------~~--~~~v~~ttr~~~~g~~~g~~~~~~~   57 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS-S------IF--GFSVSHTTRNPRPGEEDGKDYYFVT   57 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT-T------TE--EECCCEECSCCCTTCCBTTTBEECC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc-h------hc--eeeeeeeccCCCCcccCCceEEEcc
Confidence            3578999999999999999999999875 2      11  1122234555555556666555443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.47  E-value=6e-07  Score=78.76  Aligned_cols=37  Identities=14%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d~~   49 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAGDL   49 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHHHH
Confidence            4567899999999999999999999998 888888865

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.46  E-value=2.2e-07  Score=80.43  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~   39 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAF   39 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHH
Confidence            3567999999999999999999999987 777776654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.45  E-value=6.2e-07  Score=82.33  Aligned_cols=130  Identities=17%  Similarity=0.179  Sum_probs=70.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDF  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f  135 (343)
                      ..+.+|+|+|++||||||+++.|++.++. ..+++.|.+  ...+      +...++.       .........+....+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~--r~~~------~~~~~i~-------~~~g~~~~~~~~~~~   94 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF--RSQH------PHYLELQ-------QEYGKDSVEYTKDFA   94 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG--GTTS------TTHHHHH-------TTCSSTTHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH--HHhc------hhHHHHH-------HHcCchHHHHhhHHH
Confidence            55789999999999999999999999862 234454443  1111      1000000       000000001111112


Q ss_pred             hhhhhHHHHHHHhcCCeeEEEcCchh--hHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          136 RLQADNAISDIISRKKTPLLVGGSNS--FIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       136 ~~~a~~~i~~i~~~g~~pIlvGGT~l--Y~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      .+.....+..+.+.|...|+.|+-+-  +...+..-        +.          ...+.+.++++.++.+++.+|+..
T Consensus        95 ~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~--------l~----------~~g~~v~lv~l~~~~e~~~~R~~~  156 (253)
T 2p5t_B           95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL--------LK----------NKGYEVQLALIATKPELSYLSTLI  156 (253)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH--------HH----------HTTCEEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHH--------HH----------HCCCcEEEEEEeCCHHHHHHHHHH
Confidence            33445566666666765555554221  11222110        11          012456667889999999999999


Q ss_pred             HHHHHH
Q 019312          214 RVDDML  219 (343)
Q Consensus       214 Rv~~Ml  219 (343)
                      |..++.
T Consensus       157 R~~~~~  162 (253)
T 2p5t_B          157 RYEELY  162 (253)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            987654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.43  E-value=2e-07  Score=80.36  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++++|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~-~~~~~~d~~   45 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSG-LKYINVGDL   45 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhC-CeEEEHHHH
Confidence            4567899999999999999999999998 777777765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.41  E-value=3.7e-08  Score=94.06  Aligned_cols=56  Identities=14%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ..+++.+|+|.|+   ..+|+++++++          ++|++++|+||||||||||++.|++.+. +.|+
T Consensus       100 ~~i~~~~vs~~y~---~~vL~~vsl~i----------~~Ge~vaIvGpsGsGKSTLl~lL~gl~~-G~I~  155 (305)
T 2v9p_A          100 TFFNYQNIELITF---INALKLWLKGI----------PKKNCLAFIGPPNTGKSMLCNSLIHFLG-GSVL  155 (305)
T ss_dssp             HHHHHTTCCHHHH---HHHHHHHHHTC----------TTCSEEEEECSSSSSHHHHHHHHHHHHT-CEEE
T ss_pred             CeEEEEEEEEEcC---hhhhccceEEe----------cCCCEEEEECCCCCcHHHHHHHHhhhcC-ceEE
Confidence            4588999999997   35899999997          8999999999999999999999999984 6553

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.39  E-value=9.1e-07  Score=81.59  Aligned_cols=114  Identities=19%  Similarity=0.252  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc---CCCcee--cCCceEEEecccccCCCCCcccccccCccccccccCCCcccCh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF---FPSEII--NSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTP  132 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~---~~~eII--s~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~  132 (343)
                      ++.+|+|+|++||||||+++.|++.+   + ..++  +.|.+.              +.+.+        ..    ....
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~--------------~~l~~--------~~----~~~e   55 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIR--------------ESFPV--------WK----EKYE   55 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHH--------------TTSSS--------CC----GGGH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHH--------------HHHhh--------hh----HHHH
Confidence            35799999999999999999999973   3 3333  444330              00101        01    1112


Q ss_pred             hhhhhhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH
Q 019312          133 DDFRLQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN  212 (343)
Q Consensus       133 ~~f~~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~  212 (343)
                      ..+.......+....+.  ..||+.|+.+|- .....        +.      .+.....+..++++|+++.+.+.+|+.
T Consensus        56 ~~~~~~~~~~i~~~l~~--~~vIiD~~~~~~-~~~~~--------l~------~~a~~~~~~~~vi~l~~~~e~~~~R~~  118 (260)
T 3a4m_A           56 EFIKKSTYRLIDSALKN--YWVIVDDTNYYN-SMRRD--------LI------NIAKKYNKNYAIIYLKASLDVLIRRNI  118 (260)
T ss_dssp             HHHHHHHHHHHHHHHTT--SEEEECSCCCSH-HHHHH--------HH------HHHHHTTCEEEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhC--CEEEEeCCcccH-HHHHH--------HH------HHHHHcCCCEEEEEEeCCHHHHHHHHH
Confidence            22333334555665544  467777765542 11110        00      000011245678999999999999999


Q ss_pred             HHH
Q 019312          213 KRV  215 (343)
Q Consensus       213 ~Rv  215 (343)
                      +|-
T Consensus       119 ~R~  121 (260)
T 3a4m_A          119 ERG  121 (260)
T ss_dssp             HTT
T ss_pred             hCC
Confidence            885

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.39  E-value=1e-07  Score=90.18  Aligned_cols=58  Identities=21%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +..+++.+++|.+    ..+++++++++          .+|++++|+||||||||||++.|++.++|.    .|++
T Consensus        38 ~~~l~~~~l~~~~----~~vl~~isl~i----------~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~I   95 (290)
T 2bbs_A           38 DDSLSFSNFSLLG----TPVLKDINFKI----------ERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKI   95 (290)
T ss_dssp             ------------C----CCSEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHTTSSCEE----EEEE
T ss_pred             CceEEEEEEEEcC----ceEEEeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CcEE
Confidence            3568889999863    34899999998          899999999999999999999999998743    5666

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.38  E-value=5.6e-07  Score=84.65  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC-CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF-PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~-~~eIIs~Ds~   94 (343)
                      ..+.+|+|+||+||||||+++.|++.++ ...+||.|.+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~   69 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   69 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence            4578999999999999999999999884 2566776654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.38  E-value=9.6e-07  Score=77.82  Aligned_cols=28  Identities=29%  Similarity=0.542  Sum_probs=26.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+||+||||||+++.|++.++
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999885

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.36  E-value=5e-07  Score=76.99  Aligned_cols=111  Identities=19%  Similarity=0.355  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      ..+|+|+|+.||||||+++.|++.++ .++|+.|.+  ++.. .+  .+ ..+       ++      . .+....|...
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg-~~~id~D~~--~~~~-~g--~~-~~~-------~~------~-~~g~~~~~~~   65 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMI--ISER-VG--LS-VRE-------IF------E-ELGEDNFRMF   65 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT-CCEEEHHHH--HHHH-HT--SC-HHH-------HH------H-HTCHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHH--HHHH-hC--CC-HHH-------HH------H-HhCHHHHHHH
Confidence            57999999999999999999999998 888888776  2211 01  00 000       00      0 1223344444


Q ss_pred             hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          139 ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       139 a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      ..+.+..+.+.+...|+++|.++-+        + ..  +             +....+++|++|.+.+.+|+.+|
T Consensus        66 ~~~~l~~~~~~~~~~Vi~~g~g~~~--------~-~~--l-------------~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           66 EKNLIDELKTLKTPHVISTGGGIVM--------H-EN--L-------------KGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             HHHHHHHHHTCSSCCEEECCGGGGG--------C-GG--G-------------TTSEEEEEEECCHHHHHHHHCC-
T ss_pred             HHHHHHHHHhcCCCEEEECCCCEec--------h-hH--H-------------hcCCEEEEEECCHHHHHHHHhcc
Confidence            4455666665554315554433211        1 00  1             11235789999999999999877

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.35  E-value=2.1e-07  Score=86.08  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.      .+++++++++          .+|++++|+||||||||||++.|++.++|    + |++. +.|.+
T Consensus         5 l~~~~l~~~------~vl~~vsl~i----------~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p----~-G~i~-~~g~~   62 (249)
T 2qi9_C            5 MQLQDVAES------TRLGPLSGEV----------RAGEILHLVGPNGAGKSTLLARMAGMTSG----K-GSIQ-FAGQP   62 (249)
T ss_dssp             EEEEEEEET------TTEEEEEEEE----------ETTCEEEEECCTTSSHHHHHHHHTTSSCC----E-EEEE-ETTEE
T ss_pred             EEEEceEEE------EEEeeeEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCCC----C-eEEE-ECCEE
Confidence            677788877      3899999998          89999999999999999999999999873    3 7774 77877


Q ss_pred             cc
Q 019312          102 IT  103 (343)
Q Consensus       102 I~  103 (343)
                      +.
T Consensus        63 ~~   64 (249)
T 2qi9_C           63 LE   64 (249)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.34  E-value=4e-07  Score=80.84  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=25.9

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|++++|+||||||||||++.|++.++
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            48899999999999999999999999885

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.33  E-value=1.1e-07  Score=81.71  Aligned_cols=34  Identities=35%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~-~~~~d~d~~   38 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFL   38 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcccHH
Confidence            4689999999999999999999998 788887766

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.31  E-value=3.7e-07  Score=99.12  Aligned_cols=62  Identities=18%  Similarity=0.264  Sum_probs=52.9

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceE
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQ   95 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~q   95 (343)
                      .-+++.+++|.|+.....+++++++++          .+|++++|+||||||||||++.|++.+.|.    .|++.
T Consensus       670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I----------~~GeivaIiGpNGSGKSTLLklLaGll~P~----sG~I~  731 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTSKPQITDINFQC----------SLSSRIAVIGPNGAGKSTLINVLTGELLPT----SGEVY  731 (986)
T ss_dssp             EEEEEEEEEECCTTCSSCSEEEEEEEE----------ETTCEEEECSCCCHHHHHHHHHHTTSSCCS----EEEEE
T ss_pred             ceEEEEeeEEEeCCCCceeeeccEEEE----------cCCCEEEEECCCCCCHHHHHHHHhCCCCCC----ceEEE
Confidence            358899999999754345899999998          899999999999999999999999998754    56663

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.30  E-value=2.7e-07  Score=77.68  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+||+||||||+++.| +.++ ..+++.|..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g-~~~i~~~~~   34 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERG-AKVIVMSDV   34 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTT-CEEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCC-CcEEEHhHH
Confidence            48999999999999999999 7777 777776554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.30  E-value=2.3e-07  Score=80.20  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-CCEEeCchH
Confidence            4699999999999999999999998 888888876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.30  E-value=1.5e-06  Score=74.61  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .++.+|+|+|+.||||||+++.|++.++ ..++
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i   34 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLP-GSFV   34 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHST-TCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC-CCEE
Confidence            3567999999999999999999999987 5544

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.29  E-value=1.5e-06  Score=79.57  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCc----------eecCCceEEEec
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE----------IINSDKMQVYKG   99 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e----------IIs~Ds~qvy~g   99 (343)
                      ++.+|+|+|++||||||+++.|++.++ ..          +|+.|.+  |+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg-~~~~d~~~~~~~~i~~D~~--~~~   69 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSF--YRV   69 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT-GGGSCGGGCSEEEEEGGGG--BCC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh-hhcccccCCceEEEecCcc--ccc
Confidence            456899999999999999999999887 55          6888887  553

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.28  E-value=3.1e-07  Score=83.74  Aligned_cols=39  Identities=18%  Similarity=0.148  Sum_probs=26.5

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+|+++++++          .++.+++|+||||||||||++.|++.++
T Consensus        12 ~~~l~~isl~i----------~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           12 DLGTENLYFQS----------MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             ---------------------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceeecceeccC----------CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34789999997          7889999999999999999999999875

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.28  E-value=1.7e-06  Score=74.48  Aligned_cols=35  Identities=14%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~   37 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGEL   37 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence            57899999999999999999999998 888888876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.28  E-value=3.2e-07  Score=78.12  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=30.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~d~~   36 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG-YEFVDTDIF   36 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC-CcEEcccHH
Confidence            5799999999999999999999998 788887766

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.26  E-value=6.5e-06  Score=71.26  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|++||||||+++.|++.+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.26  E-value=3.4e-07  Score=88.90  Aligned_cols=58  Identities=16%  Similarity=0.080  Sum_probs=47.8

Q ss_pred             eecccCCc---CCccccccc---------ccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           23 SSFYSPFL---HPKRRRSRW---------RKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        23 ~~~~~~~~---~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ++.+|+|.   |+...+.+|         +.+++++          .++.+++|+||||||||||++.|++.+++.    
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i----------~~G~~i~ivG~sGsGKSTll~~l~~~~~~~----  202 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAV----------QLERVIVVAGETGSGKTTLMKALMQEIPFD----  202 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHH----------HTTCCEEEEESSSSCHHHHHHHHHTTSCTT----
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHH----------hcCCEEEEECCCCCCHHHHHHHHHhcCCCC----
Confidence            77889998   875333455         8888887          889999999999999999999999998853    


Q ss_pred             CCce
Q 019312           91 SDKM   94 (343)
Q Consensus        91 ~Ds~   94 (343)
                      .+.+
T Consensus       203 ~g~I  206 (361)
T 2gza_A          203 QRLI  206 (361)
T ss_dssp             SCEE
T ss_pred             ceEE
Confidence            4666

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.22  E-value=4e-07  Score=77.27  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~   34 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEE   34 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHH
Confidence            689999999999999999999998 778877766

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.22  E-value=4e-06  Score=74.76  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +..+|+|.|+.||||||+++.||+.++ .++++ +.+
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg-~~~~D-~~~   39 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYN-IPLYS-KEL   39 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTT-CCEEC-HHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhC-cCEEC-HHH
Confidence            356999999999999999999999999 88776 544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.19  E-value=5.8e-07  Score=77.55  Aligned_cols=51  Identities=14%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .++..+++++          .+|.+++|+||||||||||++.|++.+ |.    .|.+. +.|.++.
T Consensus        21 ~~l~~vsl~i----------~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~----~G~V~-~~g~~i~   71 (158)
T 1htw_A           21 FAEILLKLHT----------EKAIMVYLNGDLGAGKTTLTRGMLQGI-GH----QGNVK-SPTYTLV   71 (158)
T ss_dssp             HHHHHHHHCC----------SSCEEEEEECSTTSSHHHHHHHHHHHT-TC----CSCCC-CCTTTCE
T ss_pred             HHHhcccccc----------CCCCEEEEECCCCCCHHHHHHHHHHhC-CC----CCeEE-ECCEeee
Confidence            4678889987          889999999999999999999999998 44    56663 5566553

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.18  E-value=2.5e-06  Score=79.46  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      .+|+|+|++||||||+++.|++.+....+|+.|.+  ...+.  ..  +.    +..    +.....    ....+....
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~--r~~~~--~~--~~----g~~----~~~~~~----~~~~~~~~~   64 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY--RQSIM--AH--EE----RDE----YKYTKK----KEGIVTGMQ   64 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH--HHHHT--TS--CC----CC-------CCHH----HHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH--HHHhc--cC--Cc----ccc----cccchh----hhhHHHHHH
Confidence            58999999999999999999997532677877743  11111  00  00    000    000000    011122333


Q ss_pred             hHHHHHHH---hcCCeeEEEcCchhh---HHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHH
Q 019312          140 DNAISDII---SRKKTPLLVGGSNSF---IYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNK  213 (343)
Q Consensus       140 ~~~i~~i~---~~g~~pIlvGGT~lY---~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~  213 (343)
                      .+.+....   +.|+ .+|+.|+.+.   .+.+..                  +.....++..+++|+++.+++.+|+.+
T Consensus        65 ~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~------------------~~~~~~~~~~~i~l~~~~e~~~~R~~~  125 (301)
T 1ltq_A           65 FDTAKSILYGGDSVK-GVIISDTNLNPERRLAWET------------------FAKEYGWKVEHKVFDVPWTELVKRNSK  125 (301)
T ss_dssp             HHHHHHHTTSCTTCC-EEEECSCCCCHHHHHHHHH------------------HHHHTTCEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCC-EEEEeCCCCCHHHHHHHHH------------------HHHHcCCcEEEEEEECCHHHHHHHHHh
Confidence            44555555   5555 5677776542   111110                  000112456789999999999999998


Q ss_pred             HH
Q 019312          214 RV  215 (343)
Q Consensus       214 Rv  215 (343)
                      |-
T Consensus       126 R~  127 (301)
T 1ltq_A          126 RG  127 (301)
T ss_dssp             CG
T ss_pred             cc
Confidence            86

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.18  E-value=1.9e-06  Score=74.75  Aligned_cols=36  Identities=22%  Similarity=0.438  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~   46 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-FTHLSTGEL   46 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence            457999999999999999999999998 888888876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.08  E-value=1.9e-06  Score=78.31  Aligned_cols=39  Identities=23%  Similarity=0.468  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ...++++|+|+||.||||+|++..|++.++ ...||.|.+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g-~~hIstGdl   63 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH-FNHLSSGDL   63 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHC-CEEECHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHC-CceEcHHHH
Confidence            346788999999999999999999999999 888998887

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.08  E-value=1.1e-06  Score=84.47  Aligned_cols=57  Identities=12%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             ecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           24 SFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      +.+++| |    ..+++.+++++          .++++++|+||||||||||++.|++.+++.    .+.+. +.|.
T Consensus       151 ~~~v~f-y----~~~l~~l~~~i----------~~g~~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i~-i~~~  207 (330)
T 2pt7_A          151 YNLLDN-K----EQAISAIKDGI----------AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE----ERIIS-IEDT  207 (330)
T ss_dssp             TTTSTT-H----HHHHHHHHHHH----------HHTCCEEEEESTTSCHHHHHHHGGGGSCTT----SCEEE-EESS
T ss_pred             cCchhh-H----HHHHhhhhhhc----------cCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcEEE-ECCe
Confidence            667777 5    34788889887          788999999999999999999999998853    56663 4443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.06  E-value=4e-06  Score=72.70  Aligned_cols=26  Identities=38%  Similarity=0.520  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+++|+||||||||||++.|++...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~   27 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD   27 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC
Confidence            46899999999999999999998654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.05  E-value=7e-06  Score=70.61  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=24.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++.+|+|+|++||||||+++.|++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999987

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.04  E-value=5.3e-06  Score=78.61  Aligned_cols=88  Identities=16%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccc-ccccCCCcccChhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL-GEFVPDDVEFTPDDF  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li-~~~~~~~~~~s~~~f  135 (343)
                      ..+++++|+||   ||+||...|...++       +.+  ..-.+.+|..|.+.|..|+.||++ +.-.+.. ....+.|
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~-------~~~--~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~-~i~~g~f  169 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFP-------DKF--GSCVPHTTRPKREYEIDGRDYHFVSSREKMEK-DIQAHKF  169 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCT-------TTE--ECCCCEECSCCCTTCCBTTTBEECSCHHHHHH-HHHTTCE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCc-------cce--eeeeeecccCCCCccccCceeEecCCHHHHHH-HHHCCCc
Confidence            45689999999   79999999998765       222  334567899999999999999998 5444433 3334444


Q ss_pred             hhh----------hhHHHHHHHhcCCeeEEEc
Q 019312          136 RLQ----------ADNAISDIISRKKTPLLVG  157 (343)
Q Consensus       136 ~~~----------a~~~i~~i~~~g~~pIlvG  157 (343)
                      .+.          ..+.|.++.++|+.+|+-.
T Consensus       170 lE~~~~~g~~YGt~~~~V~~~~~~G~~vildi  201 (295)
T 1kjw_A          170 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDV  201 (295)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             EEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence            443          4567888899999877753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.04  E-value=8e-06  Score=76.36  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+.+|+|+|++||||||+++.|+ .++ ..+|+.|.+
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg-~~~id~D~~  108 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLG-AYIIDSDHL  108 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHT-CEEEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCC-CcEEehhHH
Confidence            456789999999999999999999 467 788888877

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.03  E-value=1e-05  Score=69.41  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|+|+|++||||||+++.|++.++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999876

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.99  E-value=8.4e-06  Score=74.04  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|.||+||||||+++.|++.++
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999999987

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.98  E-value=3.4e-06  Score=72.93  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|.+++|+||||||||||++.|++.++
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~   34 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPG   34 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence            46789999999999999999999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.97  E-value=2.2e-06  Score=72.90  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~~   38 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQE   38 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccHH
Confidence            57899999999999999999999988 666666554

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.93  E-value=4.4e-06  Score=71.72  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|+|+|++||||||+++.|++.++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999886

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.93  E-value=3.1e-06  Score=74.56  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC-CceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP-SEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~-~eIIs~Ds~   94 (343)
                      .++.+++|+||||||||||++.|++.+++ ..+|+.|..
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~   42 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY   42 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence            56889999999999999999999998763 345666655

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.91  E-value=9e-06  Score=82.14  Aligned_cols=51  Identities=14%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccC
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITT  104 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T  104 (343)
                      +++++++++          .+ .+++|+||||||||||++.|++.+.|.    .|++. +.|.++..
T Consensus        19 ~l~~vsl~i----------~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~I~-~~g~~~~~   69 (483)
T 3euj_A           19 GFFARTFDF----------DE-LVTTLSGGNGAGKSTTMAGFVTALIPD----LTLLN-FRNTTEAG   69 (483)
T ss_dssp             TEEEEEEEC----------CS-SEEEEECCTTSSHHHHHHHHHHHHCCC----TTTCC-CCCTTSCS
T ss_pred             cccceEEEE----------cc-ceEEEECCCCCcHHHHHHHHhcCCCCC----CCEEE-ECCEEccc
Confidence            578999997          77 999999999999999999999998754    67773 67777654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.90  E-value=6e-06  Score=71.21  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=22.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHH
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      .+|++++|+||||||||||++.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc
Confidence            789999999999999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.90  E-value=4e-06  Score=74.50  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-~~~~d~g~i   39 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQ-WHLLDSGAI   39 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCcce
Confidence            46899999999999999999999998 888999988

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.89  E-value=2.8e-05  Score=71.27  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=35.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      ++.+|+|+||+||||||+++.|++.++ ..+++.|.+  |+++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg-~~~~d~g~~--~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG-ARYLDTGAM--YRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH--HHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCCcH--HHHH
Confidence            457999999999999999999999998 888999988  7664

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.89  E-value=3.4e-06  Score=79.97  Aligned_cols=124  Identities=13%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccccccc-CCCcccChhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFV-PDDVEFTPDDF  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~-~~~~~~s~~~f  135 (343)
                      ...+.|+|+||   ||+||...|...++       |.+  ..-.+.+|.+|...|..|+.||++...+ ... ....+.|
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p-------~~f--~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~-~i~~~~f  164 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYP-------DKF--GSCVPHTTRPKREYEVDGRDYHFVSSREQMER-DIQNHLF  164 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCT-------TTE--ECCCCEECSCCCTTCCBTTTBEECSCHHHHHH-HHHTTCE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhCh-------hhc--cccccCCccCCcCCccCCccccccCCHHHHHH-HHhcCce
Confidence            45678999999   49999999999876       322  3346678999999999999999984322 222 2222333


Q ss_pred             hh----------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHH
Q 019312          136 RL----------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQ  205 (343)
Q Consensus       136 ~~----------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re  205 (343)
                      .+          ...+.|.++.++|+.+||.-              |+...        ..+.....+.+.+|..+++.+
T Consensus       165 lE~a~~~gn~YGT~~~~V~~~~~~gk~viLdi--------------d~qg~--------~~lk~~~~~pi~IFI~PpS~e  222 (292)
T 3tvt_A          165 IEAGQYNDNLYGTSVASVREVAEKGKHCILDV--------------SGNAI--------KRLQVAQLYPVAVFIKPKSVD  222 (292)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHHTCEEEECC--------------CTHHH--------HHHHHTTCCCEEEEECCSCHH
T ss_pred             EEEEEEccceeEEehHHHHHHHHcCCcEEEec--------------cchhh--------hhcccccccceEEEEECCCHH
Confidence            33          33567888889999877632              22210        001111123345566677899


Q ss_pred             HHHHHHHHHH
Q 019312          206 LLYDYLNKRV  215 (343)
Q Consensus       206 ~L~~RI~~Rv  215 (343)
                      +|.+|+..|.
T Consensus       223 ~L~~r~~~r~  232 (292)
T 3tvt_A          223 SVMEMNRRMT  232 (292)
T ss_dssp             HHHHTCTTSC
T ss_pred             HHHHHHhCCC
Confidence            9998876653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.88  E-value=6.9e-06  Score=81.92  Aligned_cols=54  Identities=13%  Similarity=0.036  Sum_probs=47.0

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      ..+++.++++.|.++.+ +++++ +++          .+|.+++|+||||||||||++.|++..++
T Consensus       130 ~~l~~~~v~~~~~tg~~-vld~v-l~i----------~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVR-AINAL-LTV----------GRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CTTTSCCCCSBCCCSCH-HHHHH-SCC----------BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CceEEeccceecCCCce-EEeee-EEe----------cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45778899999876543 88999 887          89999999999999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.88  E-value=7.9e-06  Score=68.97  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+||+||||||+++.|++.++ ..+++.|.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~   35 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK-YPIIKGSSF   35 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC-CCEEECCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC-CeeecCccc
Confidence            4799999999999999999999998 777777755

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.86  E-value=8.2e-06  Score=83.36  Aligned_cols=49  Identities=24%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      .++++.|... ..++.+++ ++          .+|++++|+||||||||||++.|++.+.|
T Consensus        25 ~~ls~~yg~~-~~~l~~vs-~i----------~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           25 EDCVHRYGVN-AFVLYRLP-VV----------KEGMVVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             CCEEEECSTT-CCEEECCC-CC----------CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             cCcEEEECCc-cccccCcC-cC----------CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3778888532 23677777 65          88999999999999999999999998864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.86  E-value=2.8e-05  Score=70.70  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK   93 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds   93 (343)
                      +..+|+|.|+.||||||+++.||+.++ .++++.|-
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg-~~~~d~~~   47 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELG-IHFYDDDI   47 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHT-CEEECHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcC-CcEEcHHH
Confidence            356999999999999999999999998 88777543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.85  E-value=6.7e-06  Score=76.35  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.+++|.      .++++++  +          .++.+++|+||||||||||++.|++.+++.   ..+.+ ++.|.++
T Consensus         7 ~l~~l~~~------~vl~~i~--i----------~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I-~~~g~~i   64 (261)
T 2eyu_A            7 EFKKLGLP------DKVLELC--H----------RKMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHI-ITIEDPI   64 (261)
T ss_dssp             CGGGSSCC------THHHHGG--G----------CSSEEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEE-EEEESSC
T ss_pred             ChHHCCCH------HHHHHHh--h----------CCCCEEEEECCCCccHHHHHHHHHHhCCCC---CCCEE-EEcCCcc
Confidence            56666653      3788877  4          678999999999999999999999987631   03555 3455554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.85  E-value=2.2e-06  Score=81.83  Aligned_cols=62  Identities=10%  Similarity=0.017  Sum_probs=43.5

Q ss_pred             cceeecccCCcCCcccccccccceeeecc-------------CCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTS-------------HTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      ..|++.+|++.|.    +.++.+++....             ..-+...+.++.+++|+||||||||||++.|++.+.+
T Consensus        42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            4588999999994    255555554100             0000012477899999999999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.85  E-value=1e-05  Score=83.85  Aligned_cols=49  Identities=22%  Similarity=0.137  Sum_probs=40.0

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      .++++.|.... .++.+++ ++          .+|++++|+||||||||||++.|++.+.|
T Consensus        95 ~~ls~~yg~~~-~~l~~vs-~i----------~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A           95 EDCVHRYGVNA-FVLYRLP-IV----------KDGMVVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             GSEEEECSTTC-CEEECCC-CC----------CTTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCeEEEECCCC-eeeCCCC-CC----------CCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence            67788885321 2677777 65          88999999999999999999999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.81  E-value=5.9e-06  Score=71.84  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh-cCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR-FFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~-~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++. ++ ..+|+.|.+
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g-~~~id~d~~   45 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKL   45 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCC-CEEeeHHHH
Confidence            56789999999999999999999999 66 778888766

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.79  E-value=3.9e-06  Score=79.44  Aligned_cols=61  Identities=15%  Similarity=0.023  Sum_probs=43.0

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCC---------CCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTP---------APAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+++.+|++.|.    ++++.+++++.....         +.....++.+++|+||||||||||++.|++.++
T Consensus        36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4577888888883    367777776410000         000125678999999999999999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.78  E-value=8.9e-06  Score=72.05  Aligned_cols=28  Identities=43%  Similarity=0.534  Sum_probs=26.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+||||||||||++.|++.++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.78  E-value=6.4e-06  Score=70.85  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~-~~~i~~d~~   38 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG-FKKLSTGDI   38 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT-CEEECHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHH
Confidence            467899999999999999999999988 788888766

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.78  E-value=1.2e-05  Score=76.32  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+|.+++|+|||||||||++..|++.+.+.    .+++ .+.|.|+.
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~----~g~V-~l~g~d~~  139 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE----GTKV-LMAAGDTF  139 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCE-EEECCCCS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc----CCeE-EEEeeccc
Confidence            678999999999999999999999998633    5777 36666653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.76  E-value=8.9e-06  Score=73.85  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++.+++|+||+|||||||++.|++.++ ...++.|++ ++.+.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg-~~~~~~G~i-~~~~~~   67 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG-LQHLSSGHF-LRENIK   67 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC-CCCEEHHHH-HHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHH-HHHHHh
Confidence            368999999999999999999998887 556667776 244443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.72  E-value=1.8e-05  Score=80.94  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|++++|+||||||||||++.|++.+.|.    .|++
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~----~G~i  325 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITAD----EGSV  325 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCS----BCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEE
Confidence            789999999999999999999999998854    5666

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.71  E-value=2.2e-05  Score=81.40  Aligned_cols=58  Identities=17%  Similarity=0.055  Sum_probs=44.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+++.++++.|..   -.+..+++++          .+|++++|+||||||||||++.|++.+.|.    .|++
T Consensus       356 ~~l~~~~l~~~~~~---~~l~~~~~~v----------~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~I  413 (607)
T 3bk7_A          356 TLVEYPRLVKDYGS---FKLEVEPGEI----------RKGEVIGIVGPNGIGKTTFVKMLAGVEEPT----EGKV  413 (607)
T ss_dssp             EEEEECCEEEECSS---CEEEECCEEE----------ETTCEEEEECCTTSSHHHHHHHHHTSSCCS----BSCC
T ss_pred             eEEEEeceEEEecc---eEEEeccccc----------CCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ceEE
Confidence            35667777776642   1355566665          789999999999999999999999998754    4665

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.70  E-value=2e-05  Score=80.40  Aligned_cols=57  Identities=21%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+++.++++.|..   ..+..+++++          .+|++++|+||||||||||++.|++.++|.    .|++
T Consensus       287 ~l~~~~l~~~~~~---~~l~~~~~~i----------~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~----~G~i  343 (538)
T 1yqt_A          287 LVTYPRLVKDYGS---FRLEVEPGEI----------KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT----EGKI  343 (538)
T ss_dssp             EEEECCEEEEETT---EEEEECCEEE----------ETTCEEEEECCTTSSHHHHHHHHHTSSCCS----BCCC
T ss_pred             EEEEeeEEEEECC---EEEEeCcccc----------CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CeEE
Confidence            4666677666532   1355555555          789999999999999999999999998754    5666

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.68  E-value=1.9e-05  Score=76.45  Aligned_cols=53  Identities=11%  Similarity=-0.061  Sum_probs=44.1

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      -++..+++..|.++. .+++++ +++          .+|++++|+||||||||||++.|++...+
T Consensus        45 ~i~~~~l~~~~~tg~-~ald~l-l~i----------~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           45 PLLRQVIDQPFILGV-RAIDGL-LTC----------GIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             STTCCCCCSEECCSC-HHHHHH-SCE----------ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CeeecccceecCCCC-EEEEee-eee----------cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            356667777776543 378888 887          89999999999999999999999999873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.68  E-value=1.3e-05  Score=70.21  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|++||||||+++.|++ ++ ..+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g-~~~i~~d~~   34 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LG-AYVLDADKL   34 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CC-CEEEEccHH
Confidence            4799999999999999999999 77 888888877

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.68  E-value=3.3e-05  Score=73.33  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .++.+++|+|||||||||++..|++.+.+.    .+++ .+.|.|+.
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~----~g~V-~l~g~D~~  141 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL----GKKV-MFCAGDTF  141 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT----TCCE-EEECCCCS
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhc----CCEE-EEEeecCC
Confidence            368899999999999999999999998753    6777 46677764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.67  E-value=1.3e-05  Score=70.29  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=29.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+||+||||||+++.|++ ++ ..+|+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg-~~~id~d~~   35 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LG-VPLVDADVV   35 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TT-CCEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CC-CcccchHHH
Confidence            4799999999999999999998 66 788888877

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.66  E-value=1.6e-05  Score=69.11  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++. + ..+|+.|.+
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g-~~~id~d~~   41 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-G-YPVLDLDAL   41 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-T-CCEEEHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-C-CEEEcccHH
Confidence            45679999999999999999999998 6 888988876

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.64  E-value=9.9e-05  Score=75.07  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~   94 (343)
                      ..+.+|+++|.+||||||+++.|++.++    ...++|.|.+
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~   74 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY   74 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence            3457899999999999999999999874    1334555543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.63  E-value=2.5e-05  Score=75.98  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      +.++.+++|+|||||||||++..|++.+.+.    .+++ .+.|.|+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~----~G~V-~l~g~D~  195 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE----GTKV-LMAAGDT  195 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCE-EEECCCC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhcccc----CCEE-EEecccc
Confidence            3678999999999999999999999998632    5777 3666665

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.63  E-value=0.00018  Score=60.90  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++.++|+||+|||||||++.+++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.62  E-value=2.9e-05  Score=80.50  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=43.5

Q ss_pred             cccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           25 FYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      .++.|.|+... ..+.++++++     .+.++.+|++++|+||||||||||++.|++.+.|.
T Consensus       350 ~~~~~~y~~~~-~~l~~vsl~v-----~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~  405 (608)
T 3j16_B          350 ASRAFSYPSLK-KTQGDFVLNV-----EEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD  405 (608)
T ss_dssp             SSSCCEECCEE-EECSSCEEEE-----CCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred             cceeEEecCcc-cccCceEEEE-----ecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            56778887543 3678899987     12234556899999999999999999999998753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.61  E-value=2.4e-05  Score=68.45  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+.+|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~~d~~   54 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGEL   54 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhHH
Confidence            3456899999999999999999999998 788887765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.61  E-value=2.9e-05  Score=78.69  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      .+|.+++|+||||||||||++.|++.+.+.    .+++. +.+.|+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~----~G~V~-l~g~D~  331 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQ----GKSVM-LAAGDT  331 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEE-EECCCT
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhc----CCeEE-EecCcc
Confidence            778999999999999999999999988632    56663 444444

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.60  E-value=2.2e-05  Score=67.31  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~   40 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDL   40 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC-CeEeeHHHH
Confidence            46899999999999999999999998 888888765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.60  E-value=2e-05  Score=70.53  Aligned_cols=37  Identities=32%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~   41 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFE-LKHLSSGDL   41 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSS-SEEEEHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcC-CeEEechHH
Confidence            3467999999999999999999999998 788888776

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.60  E-value=2.8e-05  Score=84.54  Aligned_cols=50  Identities=22%  Similarity=0.210  Sum_probs=42.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      ..+...++++.|..  ..+++++++++          .+|++++|+||||||||||++.|++
T Consensus       434 ~~L~~~~ls~~yg~--~~iL~~vsl~I----------~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          434 EDLCNCEFSLAYGA--KILLNKTQLRL----------KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEeeEEEEECC--EEeEecceEEE----------cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            35666688888853  34899999998          8999999999999999999999994

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.59  E-value=2.3e-05  Score=69.66  Aligned_cols=37  Identities=24%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~   38 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDM   38 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEehhHH
Confidence            3567999999999999999999999998 888888776

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.56  E-value=3e-05  Score=76.91  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      .++.+++|+|||||||||+++.|++.+++.    .+.+ ++.|-++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~----~g~I-~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS----ERNI-LTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCT----TSCE-EEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCC----CCEE-EEecccc
Confidence            467899999999999999999999998743    4556 3445444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.56  E-value=4.2e-05  Score=79.35  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=27.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      .+|++++|+||||||||||++.|++.+.|.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~  130 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPN  130 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            789999999999999999999999998753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.56  E-value=2.4e-05  Score=69.37  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+|+|+|++||||||+++.|++.++ ..+|++|.+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg-~~vid~D~~   46 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYG-AHVVNVDRI   46 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC-CEEEECcHH
Confidence            46899999999999999999999988 899999988

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.55  E-value=2.9e-05  Score=68.51  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=26.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.++++++|+||||||||||++.|+....
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999999998543

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.55  E-value=0.00018  Score=75.94  Aligned_cols=123  Identities=18%  Similarity=0.199  Sum_probs=82.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccc-ccccCCCcccChhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLL-GEFVPDDVEFTPDDF  135 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li-~~~~~~~~~~s~~~f  135 (343)
                      ..+++++|+||+   |+||...|...++       +.+  ..-...+|.+|...|..|+.|||+ +.-.+.. .+....|
T Consensus       529 ~~~r~vvl~GP~---K~tl~~~L~~~~~-------~~~--~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~-~i~~~~f  595 (721)
T 2xkx_A          529 HYARPIIILGPT---KDRANDDLLSEFP-------DKF--GSCVPHTTRPKREYEIDGRDYHFVSSREKMEK-DIRAHKF  595 (721)
T ss_pred             CCCCEEEEECCC---HHHHHHHHHHhCc-------cce--eecccccccCCCCCccCCceeEEecCHHHHHH-HHhcCCc
Confidence            356899999994   9999999988765       222  234567899999999999999998 6555544 4445555


Q ss_pred             hhh----------hhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHH
Q 019312          136 RLQ----------ADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQ  205 (343)
Q Consensus       136 ~~~----------a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re  205 (343)
                      .+.          ..+.|+++.++|+.+||-. ..-.++.|-.                     ...|.+.+|...++.+
T Consensus       596 lE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi-~~~~~~~l~~---------------------~~~~p~~ifi~pps~~  653 (721)
T 2xkx_A          596 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDV-SANAVRRLQA---------------------AHLHPIAIFIRPRSLE  653 (721)
T ss_pred             eEEEEECCccceeeHHHHHHHHHCCCcEEEeC-CHHHHHHHHh---------------------cccCCEEEEEeCCcHH
Confidence            543          3567889999999888764 2222222211                     0123445555567789


Q ss_pred             HHHHHHHHHH
Q 019312          206 LLYDYLNKRV  215 (343)
Q Consensus       206 ~L~~RI~~Rv  215 (343)
                      +|.+ |..|.
T Consensus       654 ~L~~-l~~R~  662 (721)
T 2xkx_A          654 NVLE-INKRI  662 (721)
T ss_pred             HHHH-HhccC
Confidence            9988 76665

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.54  E-value=2.4e-05  Score=69.67  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.+|+|+||+||||||+++.|++.++ ...++.|.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~   39 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDL   39 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence            457899999999999999999999998 777777765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.54  E-value=3e-05  Score=68.76  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+|++||||||+++.|++ ++ ..+|+.|.+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg-~~~id~D~~   37 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LG-INVIDADII   37 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cC-CEEEEccHH
Confidence            56899999999999999999998 77 788888876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.54  E-value=2.6e-05  Score=77.56  Aligned_cols=50  Identities=16%  Similarity=-0.006  Sum_probs=36.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCE--EEEEcCCcccHHHHHHHHHhhc
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKL--VVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+++.+ ++.|... +  +.++++++          .+|.+  ++|+||||||||||++.|++..
T Consensus        15 ~~l~~~~-~~~y~~~-~--L~~vsl~i----------~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           15 RTVPLAG-HVGFDSL-P--DQLVNKSV----------SQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             --CCCCC-CC-CC---C--HHHHHHSC----------C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEEEee-EEEECCe-e--cCCCceEe----------cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3444444 5666532 3  89999997          88999  9999999999999999999874

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.53  E-value=4.1e-05  Score=73.50  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+|.+++|+|||||||||++..|++.+.+.    .+++ .+.|.|+.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~----~g~V-~l~g~D~~  168 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH----GFSV-VIAASDTF  168 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCE-EEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCEE-EEEeeccc
Confidence            568999999999999999999999988643    5677 46666654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.53  E-value=3.1e-05  Score=67.49  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg-~~~~d~d~~   36 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG-VPYLSSGLL   36 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC-CceeccchH
Confidence            899999999999999999999998 889999987

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.53  E-value=8.6e-06  Score=81.77  Aligned_cols=45  Identities=29%  Similarity=0.343  Sum_probs=36.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++.++++.|.        ++++++          .+|++++|+||||||||||++.|++...
T Consensus       119 i~~~nl~~~y~--------~vsl~i----------~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          119 KYIYNLHFMLE--------KIRMSN----------FEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             HHHHHHHHHHH--------HHHHHS----------SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             hhhhhhhehhh--------cCceEe----------CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            55556666553        566665          7899999999999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.50  E-value=3.8e-05  Score=69.31  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg-~~~~d~d~~   50 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG-FTYLDTGAM   50 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC-CceecCCCe
Confidence            5678999999999999999999999998 888999988

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.49  E-value=5.1e-05  Score=70.56  Aligned_cols=37  Identities=14%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .|++++..+          .+|.+++|+||||||||||++.++....
T Consensus        24 ~Ld~i~~~l----------~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           24 GINDKTLGA----------RGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             THHHHHCSB----------CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC----------CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            678888776          8899999999999999999999999875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.48  E-value=3.5e-05  Score=67.97  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~   34 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE-IPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEeeHHHH
Confidence            578999999999999999999998 888888776

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.48  E-value=3.8e-05  Score=69.99  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+||+||||||+++.|++.++ ..+||.|.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~   63 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDL   63 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHH
Confidence            3567899999999999999999999998 888888776

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.48  E-value=5.7e-05  Score=77.16  Aligned_cols=29  Identities=28%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      .+|++++|+||||||||||++.|++.+.|
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            67999999999999999999999998865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.47  E-value=3.8e-05  Score=80.13  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=28.7

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHH
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLS   76 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla   76 (343)
                      ..+|+++++++          ++|++++|+||||||||||+
T Consensus        31 ~~~L~~vsl~i----------~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           31 AHNLKNIDVEI----------PRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             STTCCSEEEEE----------ETTSEEEEECSTTSSHHHHH
T ss_pred             ccceeccEEEE----------CCCCEEEEECCCCCCHHHHh
Confidence            34799999998          89999999999999999997

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.47  E-value=3.8e-05  Score=67.89  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||+||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~   34 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDM   34 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHH
Confidence            478999999999999999999998 888888776

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.46  E-value=4.3e-05  Score=68.58  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=28.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|++++|+||||||||||++.|++. .|.    .|++
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~----~G~I   52 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ----SKQV   52 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHH----TTSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCc----CCee
Confidence            46899999999999999999999998 642    4555

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.45  E-value=2.9e-05  Score=75.40  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+||||||||||++.|++.++
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4566999999999999999999999886

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.45  E-value=6.5e-05  Score=68.83  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      -.++|+||.||||||++..|++.++ ..+||.|.+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g-~~~is~gdl   42 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG-IPQISTGDM   42 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT-CCEECHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC-CCeeechHH
Confidence            4789999999999999999999998 889998877

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.45  E-value=6.1e-05  Score=65.80  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=22.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++|+||||||||||++.|++.++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999985

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.45  E-value=6.7e-05  Score=66.07  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+|++||||||+++.|++.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999999874

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.44  E-value=0.00034  Score=72.80  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=24.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ++.+|+|+|++||||||+++.|++.+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999999988

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.43  E-value=0.00039  Score=68.27  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ..+++|+|+||+|   +||.+.|...++ .      ..   .   .+|..|++.|..|+.|||+                
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p-~------~~---~---~~tr~pR~gE~dG~~Y~Fv----------------  277 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEP-D------IY---Q---IAKSEPRDAGTDQRSSGII----------------  277 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCT-T------TE---E---ECCCCCCCSSSCCC--CCC----------------
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCc-c------cc---c---cccCCCCCcccCCccCCcC----------------
Confidence            4678999999998   899999988876 2      12   1   1466788889999999876                


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                        ....|.++.++|+.+||-              +|+...        +.+.....+.+.+|.++++.++|.+| .+|
T Consensus       278 --~~~~V~~~~~~Gk~~iLd--------------Id~qg~--------~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r  330 (391)
T 3tsz_A          278 --RLHTIKQIIDQDKHALLD--------------VTPNAV--------DRLNYAQWYPIVVFLNPDSKQGVKTM-RMR  330 (391)
T ss_dssp             --CHHHHHHHHTTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred             --cHHHHHHHHHcCCEEEEE--------------eCHHHH--------HHHHhCCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence              356788899999988773              233221        01111112346677788899999987 445

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.42  E-value=5.3e-05  Score=72.77  Aligned_cols=65  Identities=18%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             eecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           23 SSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      ++.++++.|.  ...+++++++++          .++.+++|+||+|||||||+..|++.+.+.    .+++. +.+.++
T Consensus        31 e~~~~~~~~~--~~~~l~~i~~~~----------~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~----~g~v~-i~~~d~   93 (337)
T 2qm8_A           31 ESRRADHRAA--VRDLIDAVLPQT----------GRAIRVGITGVPGVGKSTTIDALGSLLTAA----GHKVA-VLAVDP   93 (337)
T ss_dssp             TCSSHHHHHH--HHHHHHHHGGGC----------CCSEEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEE-EEEECG
T ss_pred             eeCCcccccC--hHHHHHhCCccc----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhC----CCEEE-EEEEcC
Confidence            3444444442  123678888876          789999999999999999999999987532    46663 556666


Q ss_pred             cC
Q 019312          103 TT  104 (343)
Q Consensus       103 ~T  104 (343)
                      .+
T Consensus        94 ~~   95 (337)
T 2qm8_A           94 SS   95 (337)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.42  E-value=6.2e-05  Score=73.70  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=35.9

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      .+++++++.+          +++.+++|+||+|||||||++.|++.+. +.+++
T Consensus       157 ~~l~~~~~~i----------~~~~~i~l~G~~GsGKSTl~~~l~~~~~-g~~~~  199 (377)
T 1svm_A          157 DFLKCMVYNI----------PKKRYWLFKGPIDSGKTTLAAALLELCG-GKALN  199 (377)
T ss_dssp             HHHHHHHHCC----------TTCCEEEEECSTTSSHHHHHHHHHHHHC-CEEEC
T ss_pred             HHHHhccccc----------CCCCEEEEECCCCCCHHHHHHHHHhhcC-CcEEE
Confidence            3667777776          7889999999999999999999999887 55443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.41  E-value=5.8e-05  Score=64.85  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++..++|+||+|||||||++.+++.+.
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4588999999999999999999998873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.40  E-value=6.7e-05  Score=72.34  Aligned_cols=30  Identities=37%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             CCC--CCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           56 SKK--DKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        56 ~~~--~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      +.+  ++.++|+||||||||||++.|++.+++
T Consensus       165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            366  899999999999999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.40  E-value=9.8e-05  Score=76.99  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHH
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL   79 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~l   79 (343)
                      .+|+++++++          .+|++++|+||||||||||++.+
T Consensus       336 ~~L~~vsl~I----------~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          336 HNLKNVSVKI----------PLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             TTCCSEEEEE----------ETTSEEEEECSTTSSHHHHHTTT
T ss_pred             cccccceeEe----------cCCCEEEEEeeCCCCHHHHHHHH
Confidence            4789999998          89999999999999999999654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.39  E-value=5e-05  Score=67.61  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++..|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~l   39 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYG-LAHLSTGDM   39 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC-ceEEehhHH
Confidence            356899999999999999999999998 888888776

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.38  E-value=2.7e-05  Score=73.35  Aligned_cols=38  Identities=24%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC----CceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP----SEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~----~eIIs~Ds~   94 (343)
                      .++.+|+|.||+||||||+++.|+..++.    ..+|+.|.+
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            34679999999999999999999997651    478899988

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.36  E-value=3.7e-05  Score=76.16  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             cccccceeeeccCCCCCCCCCCCC--------------------EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDK--------------------LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      .+++++++++          .+|.                    +++|+||||||||||++.|++..++.    .+++. 
T Consensus        37 ~~l~~is~~i----------~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~----~GsI~-  101 (413)
T 1tq4_A           37 EILNLIELRM----------RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE----EGAAK-  101 (413)
T ss_dssp             HHHHHHHHHH----------HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS----TTSCC-
T ss_pred             HHhhhcccee----------cCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc----CceEE-
Confidence            3788899987          6777                    99999999999999999999987743    45552 


Q ss_pred             Eeccc
Q 019312           97 YKGLD  101 (343)
Q Consensus        97 y~gl~  101 (343)
                      +.|.+
T Consensus       102 ~~g~~  106 (413)
T 1tq4_A          102 TGVVE  106 (413)
T ss_dssp             CCC--
T ss_pred             ECCee
Confidence            34443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.35  E-value=3.5e-05  Score=67.07  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=30.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +++.+++|.|..   ..+.+  +..          .++..++|+|++|||||||++.|++..
T Consensus         4 l~~~~~~~~~~~---~~l~~--~~~----------~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A            4 LNYQQTHFVMSA---PDIRH--LPS----------DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             -------CEEEE---SSGGG--SSC----------SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             hhhhhhhheeec---CCHhH--CCC----------CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            567788888852   35555  443          668899999999999999999988765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.35  E-value=5.2e-05  Score=70.59  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           34 RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+..+++++++.          ++|  ++|+||+|||||||++.|++.++
T Consensus        31 ~~~~~l~~~~l~~----------~~G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           31 RNPDQFKALGLVT----------PAG--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HSHHHHHHTTCCC----------CSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             hCHHHHHHcCCCC----------CCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence            3455677777774          445  99999999999999999999987

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.35  E-value=6.3e-05  Score=67.41  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+||.||||+|++..|++.++ ...||.|.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g-~~~istGdl   34 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG-FVHISTGDI   34 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-CeEEcHHHH
Confidence            588999999999999999999999 889998887

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.34  E-value=8e-05  Score=67.00  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=32.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+..|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~l   50 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDM   50 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence            3457899999999999999999999998 888887765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.33  E-value=9.3e-05  Score=65.39  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc
Confidence            46899999999999999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.33  E-value=9.3e-05  Score=68.95  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDI  102 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I  102 (343)
                      .++|+||||||||||++.|++...+.    .+++. +.|.++
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~----~G~i~-~~g~~i   40 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSR----KASSW-NREEKI   40 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-----------------C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC----CCccc-cCCccc
Confidence            58899999999999999999988743    56663 566665

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.32  E-value=7.5e-05  Score=75.68  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             cccccee-eeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH--HHhhcC
Q 019312           38 RWRKTVM-ASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID--LATRFF   84 (343)
Q Consensus        38 ~~~~~~~-~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~--la~~~~   84 (343)
                      .|+++++ .+          ++|++++|+||||||||||++.  +++..+
T Consensus        27 ~Ld~i~~G~i----------~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           27 GFDDISHGGL----------PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             THHHHTTSSE----------ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCC----------CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            7899998 87          8899999999999999999999  567665

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.32  E-value=0.00043  Score=63.37  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|.|+.||||||++..|++.+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999886

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.31  E-value=0.00011  Score=70.40  Aligned_cols=28  Identities=29%  Similarity=0.246  Sum_probs=25.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.+++|+||||||||||++.|++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456999999999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.31  E-value=7.3e-05  Score=65.38  Aligned_cols=34  Identities=29%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      .++.+|+|+|+.||||||+++.|++.++ ...++.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~   41 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEV   41 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcE
Confidence            4578999999999999999999999876 444444

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.30  E-value=0.00012  Score=72.18  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=44.2

Q ss_pred             ccceeecccCCcCCcccccccc--------------cceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWR--------------KTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ...+.|.+++|.||..+. .+.              ++.+.+          .+|+.++|+||+|+|||||+..|++..
T Consensus       131 ~~ri~Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi----------~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          131 RNKILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPI----------GRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTSCCTTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCC----------BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCCCcc-ccccCCCCcccccceeeeeeeee----------cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            367889999999998765 444              334443          889999999999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.29  E-value=0.00012  Score=62.83  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc---CCCceecCC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF---FPSEIINSD   92 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~---~~~eIIs~D   92 (343)
                      +|+|+|+.||||||+++.|++.+   + ..+|+.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g-~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKG-YFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEe
Confidence            68999999999999999999987   4 5555543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.29  E-value=0.00017  Score=61.74  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++ +.+|+||||||||||+.+|...+.
T Consensus        25 ~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           25 SKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             CSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            344 999999999999999999998876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.27  E-value=0.00013  Score=64.14  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=25.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|.+++|+||||||||||++.++....
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999997653

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.26  E-value=7.7e-05  Score=65.83  Aligned_cols=91  Identities=22%  Similarity=0.382  Sum_probs=49.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccc-ccccCccccccccCCCcccChhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHK-RHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e-~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ++.|+|++|||||++|..|+.. + .+      + +|    |.|+.+..+| +..|.+|....  +.. -.+..... +.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~------~-~y----iaT~~~~d~e~~~rI~~h~~~R--~~~-w~tiE~p~-~l   63 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-A-PQ------V-LY----IATSQILDDEMAARIQHHKDGR--PAH-WRTAECWR-HL   63 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-C-SS------E-EE----EECCCC------CHHHHHHHTS--CTT-EEEECCSS-CG
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-C-CC------e-EE----EecCCCCCHHHHHHHHHHHhcC--CCC-cEEEEcHh-hH
Confidence            3789999999999999999976 4 22      2 35    4455443333 34465554331  111 01111111 12


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhh
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQ  169 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~  169 (343)
                      .+.+.+..+.+ -+||+.+-++|+..+++.
T Consensus        64 ~~~l~~~~~~~-~~VLvDclt~wl~n~l~~   92 (180)
T 1c9k_A           64 DTLITADLAPD-DAILLECITTMVTNLLFA   92 (180)
T ss_dssp             GGTSCTTSCTT-CEEEEECHHHHHHHHHHH
T ss_pred             HHHHHhhcccC-CeEEEcCHHHHHHHHHhh
Confidence            22222222222 389999999999888853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.26  E-value=8.6e-05  Score=65.72  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+|+.||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g-~~~i~~d~~   34 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG-IPQISTGDM   34 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence            478999999999999999999998 888888776

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.26  E-value=0.00017  Score=62.25  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=23.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|+|+|++||||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.25  E-value=9.6e-05  Score=66.20  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+|++||||||+++.|++.++ ..+|+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg-~~~i~~dd~   34 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS-LAHIESGGI   34 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CeEEchHHH
Confidence            689999999999999999999998 788888766

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.25  E-value=0.00046  Score=62.12  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|.+|+|.|+.||||||++..|++.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999886

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.24  E-value=8e-05  Score=75.64  Aligned_cols=30  Identities=17%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPS   86 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~   86 (343)
                      ..+..++|+|||||||||+++.|++.+++.
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            678899999999999999999999998753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.24  E-value=0.00018  Score=62.46  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+|+|+|+.||||||+++.|++.++
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   29 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIP   29 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence            468999999999999999999999883

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=0.00018  Score=67.81  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT  104 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T  104 (343)
                      ..+++++|+||||||||||++.|++...+.    .+.+. +   +|.++++
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~----~G~i~-~~~~~g~~~t~  212 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLR----VSEVS-EKLQRGRHTTT  212 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhccccccc----cccee-cccCCCCCcee
Confidence            358899999999999999999999988743    56663 4   6666654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.23  E-value=0.00011  Score=65.99  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=24.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .+|.+|+|.|++||||||+++.|++.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            67899999999999999999999987

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.23  E-value=0.0001  Score=65.09  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.+|+|+|++||||||+++.|++.++ ..+++.|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g-~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELS-MIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC-CceecCChH
Confidence            46899999999999999999999998 888888887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.00018  Score=62.58  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+|+|.|+.||||||+++.|++.++
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.19  E-value=0.00014  Score=65.89  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcC
Q 019312           62 VVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|+||+|||||||++.+++.++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.18  E-value=0.00026  Score=66.77  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT  104 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T  104 (343)
                      ..+++++|+||||||||||++.|+ ...+.    .+.+. +   +|.++++
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~----~G~i~-~~~~~G~~~t~  207 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GEELR----TQEVS-EKTERGRHTTT  207 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SCCCC----CSCC----------CCC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-HhhCc----ccccc-cccCCCCCcee
Confidence            468899999999999999999999 77643    67774 4   6666654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.18  E-value=4.6e-05  Score=78.90  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=35.3

Q ss_pred             cceeecccCCcCCcccccccccceee-eccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMA-STSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      .++++.++++.|.......+..++.- .-+..   .. -.-+.++|+||||||||||++.|++.+.|.   +.|.+. +.
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~---~~-l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~---~sG~vt-~~   80 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVE---QD-LALPAIAVIGDQSSGKSSVLEALSGVALPR---GSGIVT-RC   80 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCC---SS-CCCCCEECCCCTTSCHHHHHHHHHSCC----------CC-CS
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCC---Cc-ccCCeEEEECCCCChHHHHHHHHhCCCCCC---CCCeEE-Ec
Confidence            35778889999976554444433210 00000   00 112359999999999999999999987541   156663 66


Q ss_pred             cccc
Q 019312           99 GLDI  102 (343)
Q Consensus        99 gl~I  102 (343)
                      |.++
T Consensus        81 g~~i   84 (608)
T 3szr_A           81 PLVL   84 (608)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            7775

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.18  E-value=0.00017  Score=70.13  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=26.5

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.++.+++|+|||||||||+++.|++.++
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            36788999999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.15  E-value=0.00021  Score=67.29  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCC------Ccee-cCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFP------SEII-NSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~------~eII-s~Ds~   94 (343)
                      .++.+|+|+||+|||||||++.|++.+++      ..++ +.|+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            45789999999999999999999998862      2233 77777

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00017  Score=62.76  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++|+|+||||||||+..|++.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            6899999999999999999999986

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.13  E-value=0.00019  Score=73.50  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=27.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      +.++.+++|+|+||||||||++.|++.+++
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            457899999999999999999999999873

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.13  E-value=0.00015  Score=70.42  Aligned_cols=36  Identities=19%  Similarity=0.155  Sum_probs=31.1

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++++++++          .+| +++|+||||||||||+.+|+..++
T Consensus        50 ~l~~v~l~~----------~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           50 TITQLELEL----------GGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             TEEEEEEEC----------CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             ceeeEEEec----------CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            456777775          778 999999999999999999988776

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.11  E-value=0.00029  Score=61.62  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +.++.+++|+||+|||||||+..++.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.11  E-value=0.00025  Score=62.60  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=25.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|++||||||+++.|++.++
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5688999999999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.10  E-value=0.00019  Score=66.08  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcC
Q 019312           62 VVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|+||+|||||||++.|++.++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999999886

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.10  E-value=0.001  Score=66.82  Aligned_cols=98  Identities=15%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ..+++|+|+||+|+|   |.+.|...++ .      ..   . . .+|. |.+.|..|+.|||                 
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p-~------~f---~-s-~~TR-pR~gE~dG~~Y~F-----------------  268 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEP-D------IY---Q-I-AKSE-PRDAGTDQRSSGI-----------------  268 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCT-T------TE---E-E-CCCB-C----------CB-----------------
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCC-C------ce---e-e-ecCC-CCCcccccccCCc-----------------
Confidence            567899999999999   8888887765 2      22   1 1 2355 8888999998876                 


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY  210 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R  210 (343)
                       .....|.++.++|+.+||-              +|++..        +.+.....+.+.+|.++++.++|.++
T Consensus       269 -Ts~~~V~~vl~~Gk~~iLd--------------Id~qg~--------~~l~~~~~~p~~IFI~PPS~e~L~~~  319 (468)
T 3shw_A          269 -IRLHTIKQIIDQDKHALLD--------------VTPNAV--------DRLNYAQWYPIVVFLNPDSKQGVKTM  319 (468)
T ss_dssp             -CCHHHHHHHHTTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEECSCHHHHHHH
T ss_pred             -ccHHHHHHHHHCCCeEEEE--------------eCHHHH--------HHHHhcCCCCEEEEEeCcCHHHHHHH
Confidence             2456788889999988773              233220        01111112346677788899999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.08  E-value=0.00029  Score=61.55  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|+.||||||+++.|++.++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.04  E-value=0.00029  Score=62.60  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ++++.+++|+||+|||||||+..++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            578999999999999999999999984

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.03  E-value=0.0008  Score=60.66  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .-.|+|+|..||||||++..|++ ++ .++|++|.+
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g-~~vidaD~i   42 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RG-ASLVDTDLI   42 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CC-CcEEECcHH
Confidence            45799999999999999999998 77 899999987

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.03  E-value=7.1e-05  Score=68.29  Aligned_cols=39  Identities=18%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccccc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDIT  103 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~  103 (343)
                      .+++|+||||||||||+.+|+..+.|.    .+.+ .+.|.++.
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~----~G~i-~~~g~~~~   66 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPD----LTLL-HFRNTTEA   66 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCC----TTTC---------
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccC----CCeE-EECCEEcc
Confidence            688999999999999999999998854    6777 47777763

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.01  E-value=0.00019  Score=68.30  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=25.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEE---ecccccC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVY---KGLDITT  104 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy---~gl~I~T  104 (343)
                      +.++++++|+||||||||||++.|++...+.    .+.+. +   +|..+++
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~----~G~I~-~~~~~G~~tt~  216 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR----TNEIS-EHLGRGKHTTR  216 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC------------------------CC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhccccccc----cccee-eecCCCccccc
Confidence            4578999999999999999999999877632    45553 3   5655544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.98  E-value=0.0014  Score=57.46  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..++|.||+|+|||+|++.+++.+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.98  E-value=0.00024  Score=62.10  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=23.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|+|+|++||||||++..|++.++
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999886

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.87  E-value=0.0034  Score=64.52  Aligned_cols=28  Identities=14%  Similarity=0.272  Sum_probs=25.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|+|++||||||+++.|++.++
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.86  E-value=0.00069  Score=74.16  Aligned_cols=58  Identities=12%  Similarity=-0.038  Sum_probs=35.6

Q ss_pred             ceeecc-----cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           21 HYSSFY-----SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+.+.+     +.+.|+.. ..++.+++++....   ......+.+++|+|||||||||+++.+ +.+
T Consensus       750 ~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~---~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGD-DFIPNDILIGCEEE---EQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CEEEEEECCCC------CC-CCCCEEEEESCCCS---CC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             eEEEEeccccEEEEEecCC-ceEeeeeeeccccc---cccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            467777     77766433 34788999886100   000123799999999999999999999 543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.85  E-value=0.00046  Score=63.63  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.++.+++|+||+|||||||+..++....
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999998654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.83  E-value=0.00056  Score=74.03  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           36 RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..++.+++++.          .++++++|+|||||||||+++.++..
T Consensus       660 ~~V~ndvsl~~----------~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          660 QYVPNNTDLSE----------DSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SSCCEEEEECT----------TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ceecccccccC----------CCCeEEEEECCCCCchHHHHHHHHHH
Confidence            34778888886          77899999999999999999998753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.81  E-value=0.00061  Score=64.24  Aligned_cols=28  Identities=32%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+|||||||||++..||..+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999998875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.81  E-value=0.00065  Score=64.49  Aligned_cols=28  Identities=29%  Similarity=0.479  Sum_probs=25.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++++++|+||+||||||++..||..+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            5678999999999999999999999885

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.80  E-value=0.0006  Score=73.89  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHH
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDL   79 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~l   79 (343)
                      ..+++.+++.       ..|+++++++          +.|.+++|+|+||||||||++.+
T Consensus       628 ~~L~v~~l~~-------~~Lk~Vsl~I----------~~Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          628 RWLEVVGARE-------HNLKNVSVKI----------PLGTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             CEEEEEEECS-------SSCCSEEEEE----------ESSSEEECCBCTTSSHHHHHTTT
T ss_pred             eEEEEecCcc-------cccccceEEE----------cCCCEEEEEcCCCCCHHHHHHHH
Confidence            4566666653       2589999998          89999999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.78  E-value=0.00062  Score=64.95  Aligned_cols=28  Identities=21%  Similarity=0.452  Sum_probs=26.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++++++|+||+|+||||++..||..+.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6688999999999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.78  E-value=0.00089  Score=60.60  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.-++|+||+|+|||+|++.+++.++
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            34588999999999999999999887

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.78  E-value=0.00029  Score=75.60  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=38.9

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH-HHhhc
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID-LATRF   83 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~-la~~~   83 (343)
                      ..+++.++++.       .|+++++++          ++|.+++|+|+||||||||++. |++.+
T Consensus       501 ~~L~v~~l~~~-------~L~~vsl~i----------~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          501 GWLELNGVTRN-------NLDNLDVRF----------PLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             CEEEEEEEEET-------TEEEEEEEE----------ESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ceEEEEeeeec-------ccccceEEE----------cCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            45777777652       589999998          8999999999999999999996 66543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.77  E-value=0.00091  Score=71.42  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=30.2

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++.+++++           .++++++|+|||||||||+++.++...
T Consensus       596 ~vlndisl~-----------~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          596 FIANPLNLS-----------PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCEEEEEC-----------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeeccccc-----------CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            366777776           457899999999999999999999863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.76  E-value=0.00098  Score=62.35  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=27.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ..+..+.|.||+|+|||+|++.++..++ ..++
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i   78 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFI   78 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEE
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC-CCEE
Confidence            4567899999999999999999999987 5443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.75  E-value=0.00077  Score=66.75  Aligned_cols=47  Identities=21%  Similarity=0.138  Sum_probs=33.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.+.++++.|..  ..++++++++                |+|+|+||||||||++.|++...
T Consensus        10 ~~l~~~~l~~~y~~--~~vl~~vsf~----------------I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           10 GYVGFANLPNQVYR--KSVKRGFEFT----------------LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             -----CCCCCCTTT--TTCC-CCCEE----------------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CcEEEEecceeECC--EEEecCCCEE----------------EEEECCCCCcHHHHHHHHhCCCC
Confidence            34788889988853  3467777776                38999999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.75  E-value=0.00084  Score=65.23  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++++|+||||||||||++.|++...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            578999999999999999999998765

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.74  E-value=0.0011  Score=70.40  Aligned_cols=49  Identities=27%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             cceeecccCCcCCc---ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           20 QHYSSFYSPFLHPK---RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        20 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+.+.++  +||.   ....++.+++++             +++++|+|||||||||+++.++...
T Consensus       549 ~~i~i~~~--rHP~le~~~~~vl~disl~-------------g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          549 DRLQIRAG--RHPVVERRTEFVPNDLEMA-------------HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SSEEEEEE--CCTTGGGTSCCCCEEEEES-------------SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEEe--ECceEccCCceEeeeccCC-------------CcEEEEECCCCCChHHHHHHHHhhh
Confidence            44555554  5664   223466666665             6899999999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.72  E-value=0.00074  Score=64.17  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             ccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           34 RRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++..++..+++.+....   ..-.....++|+||+|+|||||++.+++.++
T Consensus        29 g~~~~~~~l~~~i~~~~---~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           29 GQENVKKKLSLALEAAK---MRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             SCHHHHHHHHHHHHHHH---HHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34456677776652110   0001236899999999999999999999986

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.69  E-value=0.0007  Score=64.16  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=23.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++++|+|++|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4699999999999999999999875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.68  E-value=0.00059  Score=62.38  Aligned_cols=28  Identities=25%  Similarity=0.157  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|.|+.||||||+++.|++.+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5678999999999999999999999985

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.0008  Score=59.74  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+|.+++|+||+|||||||+..++...
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998887654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.66  E-value=0.00061  Score=60.01  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      -.+.-++|.|++|+||||++..|.+. + ..+|+.|.+.+.+.
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G-~~lvaDD~v~i~~~   54 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-G-HQLVCDDVIDLKQE   54 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-T-CEEEESSEEEEEES
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-C-CeEecCCEEEEEEe
Confidence            45788999999999999999999885 4 78899898876654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.63  E-value=0.00097  Score=72.30  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=29.8

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      -++.+++++.          .++++++|+|||||||||+++.++
T Consensus       650 ~v~ndisl~~----------~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          650 FIPNDVYFEK----------DKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CCCEEEEEET----------TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             eecccceeec----------CCCeEEEEECCCCCCHHHHHHHHH
Confidence            4677888885          678999999999999999999984

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.59  E-value=0.0015  Score=61.09  Aligned_cols=31  Identities=23%  Similarity=0.113  Sum_probs=26.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      +.+..+.|.||+|+|||+|++.+|+.++ ..+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~   64 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG-INP   64 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT-CCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCE
Confidence            4467888889999999999999999987 443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.55  E-value=0.0014  Score=54.81  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..++|.||+|+|||++++.+++.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.54  E-value=0.0013  Score=57.18  Aligned_cols=27  Identities=15%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++++|+|++|||||||+..|++.+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            357999999999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.53  E-value=0.00098  Score=64.16  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+++|.++.|+||+|||||||+..++...
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34789999999999999999999999886

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.53  E-value=0.0015  Score=56.97  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++++|+|++|||||||+..|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            47999999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.51  E-value=0.0015  Score=54.85  Aligned_cols=26  Identities=23%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...++|.||+|+|||++++.+++.+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.51  E-value=0.0013  Score=63.63  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+ +++|+||||||||||..+|+-.+
T Consensus        22 ~~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           22 QSG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             CSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            445 88899999999999998887554

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.49  E-value=0.0014  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+.+|+||||||||||+.+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999987655

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.49  E-value=0.0019  Score=59.50  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++..+.|.||+|+|||++++.+++.++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999999887

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.47  E-value=0.0021  Score=58.72  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE   87 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e   87 (343)
                      .+..+.|.||+|+|||+|++.++..++ ..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~-~~   78 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETN-AT   78 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTT-CE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC-CC
Confidence            456799999999999999999999987 44

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.46  E-value=0.0022  Score=57.60  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..+.|.||+|+|||++++.+++.++
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            356788999999999999999999887

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.41  E-value=0.0016  Score=63.11  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.++++..          .++ +++|+||||||||||+.+++..
T Consensus        17 ~~~~~~~~----------~~g-~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           17 LAPGTLNF----------PEG-VTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             CCSEEEEC----------CSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeeEEEE----------cCC-eEEEECCCCCChhHHHHHHHHh
Confidence            45677775          556 9999999999999999999863

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.37  E-value=0.00075  Score=65.60  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHhccH---HHHHHHHHhc
Q 019312          196 CFLWVDSSLQLLYDYLNKRVDDMLESGM---FEELAEFFDS  233 (343)
Q Consensus       196 ~~i~L~~~re~L~~RI~~Rv~~Ml~~Gl---leEv~~l~~~  233 (343)
                      .+++++++.++..+|+-+|-   ++.|+   .+|+.+.+..
T Consensus       291 ~~i~Vdad~ev~~~Rli~R~---~~~Gl~~s~eea~~r~~~  328 (359)
T 2ga8_A          291 LVYKIDIDYEATEERVAKRH---LQSGLVTTIAEGREKFRS  328 (359)
T ss_dssp             EEEEEECCHHHHHHHHHHHH---HHTTSCSSHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHhh---hccCCCCCHHHHHHHHHh
Confidence            46788999999999988886   45898   7888776653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.37  E-value=0.0017  Score=56.02  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++|+|++|||||||++.+++...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999998654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.36  E-value=0.0019  Score=65.33  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcC
Q 019312           62 VVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|+||+|+|||+|++.+++..+
T Consensus        67 vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999999886

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.34  E-value=0.002  Score=55.83  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=23.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++|.||+|+|||+|++.++..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999998774

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.30  E-value=0.002  Score=60.57  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++++|+|++|+||||++..||..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.29  E-value=0.0033  Score=56.71  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=27.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ++...++|.||.|+|||+++.+|++.+. +.+++
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l~-g~i~~   88 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ-GAVIS   88 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT-CEECC
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHhC-CCeee
Confidence            4456799999999999999999999987 65544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.29  E-value=0.0022  Score=58.22  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=26.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...++.+|+|.|+.||||||++..|++.+.
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            336789999999999999999999999886

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.29  E-value=0.0019  Score=55.75  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..++|+|++|||||||++.+++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.27  E-value=0.0022  Score=57.56  Aligned_cols=28  Identities=32%  Similarity=0.332  Sum_probs=25.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+|.|+.||||||++..|++.+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999886

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.25  E-value=0.0022  Score=61.36  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .+..++|.||+|+|||++|+.+++.++ .+++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~-~~~~   80 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD-VPFT   80 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence            456789999999999999999999987 5443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.25  E-value=0.0023  Score=64.96  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=25.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.+|+|+|.+||||||+++.|++.++
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999997

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.24  E-value=0.0026  Score=62.43  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=25.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.+++|+||||||||||+.+++..+.
T Consensus        24 ~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           24 GESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4478999999999999999999998876

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.23  E-value=0.0024  Score=57.40  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=24.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999985

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.20  E-value=0.0031  Score=68.23  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=27.2

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHH
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLS   76 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla   76 (343)
                      .|+++++++          +.|.+++|+||||||||||+
T Consensus       599 ~Lk~Vsl~I----------~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          599 NLKNIDVEI----------PLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TCCSEEEEE----------ESSSEEEEECSTTSSHHHHH
T ss_pred             cccccceEE----------cCCcEEEEEccCCCChhhhH
Confidence            588999998          88999999999999999997

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.20  E-value=0.0024  Score=64.97  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=25.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++..++|+||+|||||||++.+++.++
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            578999999999999999999999987

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.20  E-value=0.0022  Score=58.31  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|.+|+|.||.||||||++..|++.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999986

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.18  E-value=0.001  Score=63.05  Aligned_cols=40  Identities=23%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             cccccccceeeeccCCCCCCCCCCCCE--EEEEcCCcccHHHHHHHHHhhcC
Q 019312           35 RRSRWRKTVMASTSHTPAPAHSKKDKL--VVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..++..+...+          ..+++  ++|.||+|+||||+++.+++.+.
T Consensus        30 ~~~~~~~L~~~i----------~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           30 QNEVITTVRKFV----------DEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CHHHHHHHHHHH----------HTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------hcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            344555555554          33444  89999999999999999999875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.16  E-value=0.0013  Score=67.79  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             cccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           35 RRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      +..+++.++..+          ..+..++|+||+|||||||++.|++.+++
T Consensus        46 ~~~~l~~l~~~i----------~~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           46 QEHAVEVIKTAA----------NQKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CHHHHHHHHHHH----------HTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             chhhHhhccccc----------cCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            344556666665          66789999999999999999999999873

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.13  E-value=0.0032  Score=57.46  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ....+.|.||+|+|||++|+.+++..+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            456789999999999999999999876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.08  E-value=0.0034  Score=54.32  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..++|.||+|+|||++++.+++.+.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35899999999999999999998775

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.07  E-value=0.0025  Score=62.68  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=23.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHH
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      .+.++.+++|+||+|||||||+..++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            45789999999999999999999775

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.06  E-value=0.0026  Score=60.18  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++ +.+|+||||||||+|+.+|.-.++
T Consensus        23 ~~g-~~~i~G~NGsGKS~ll~ai~~llg   49 (322)
T 1e69_A           23 SDR-VTAIVGPNGSGKSNIIDAIKWVFG   49 (322)
T ss_dssp             CSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCC-cEEEECCCCCcHHHHHHHHHHHhC
Confidence            345 999999999999999999987653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.06  E-value=0.002  Score=58.40  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .-+.|.||+|+|||+|++.+++.++
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3477999999999999999999886

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.06  E-value=0.0038  Score=57.20  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++++.+++.++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999987

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.03  E-value=0.0033  Score=60.32  Aligned_cols=29  Identities=28%  Similarity=0.466  Sum_probs=25.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      +..+.|.||+|+|||++++.+++.++ ..+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~-~~~  100 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD-IPI  100 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT-CCE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC-CCE
Confidence            45788999999999999999999986 444

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.02  E-value=0.0034  Score=57.87  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...+.|+||+|+|||++++.+++.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            34799999999999999999999875

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.02  E-value=0.0025  Score=60.93  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=25.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|+|++|+|||||+..|+..+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999999998763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.01  E-value=0.0017  Score=56.36  Aligned_cols=43  Identities=16%  Similarity=0.110  Sum_probs=26.5

Q ss_pred             cCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           27 SPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      .+|.|+...+ .++.++++.           +..-|+|+|++|+|||||+..+..
T Consensus         5 ~~~~~~~~~~-~l~~~~~~~-----------~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            5 FDWIYSGFSS-VLQFLGLYK-----------KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             --------CH-HHHHHTCTT-----------CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHH-HHHHhhccC-----------CCcEEEEECCCCCCHHHHHHHHhc
Confidence            3455665543 666666652           334688999999999999998864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.99  E-value=0.0034  Score=62.09  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=29.7

Q ss_pred             cccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           39 WRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -+++++.+          +.+..++|+|+||||||||++.|+...
T Consensus       147 ~~~i~lel----------k~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLEL----------MLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEE----------CCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEE----------cCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            35677776          778899999999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.99  E-value=0.003  Score=63.86  Aligned_cols=30  Identities=33%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+|.+++|+||||||||||++.++....
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999998875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.98  E-value=0.003  Score=67.70  Aligned_cols=30  Identities=33%  Similarity=0.598  Sum_probs=28.1

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~   77 (343)
                      -|+++++.+          +++++++|.|.||||||||+.
T Consensus        25 NLkni~v~i----------P~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           25 NLKDISVKV----------PRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TCCSEEEEE----------ESSSEEEEESSTTSSHHHHHT
T ss_pred             CCCCeeEEe----------cCCCEEEEECCCCCCHHHHHH
Confidence            689999998          899999999999999999985

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.97  E-value=0.0041  Score=51.63  Aligned_cols=26  Identities=31%  Similarity=0.167  Sum_probs=22.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++|+.++....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            45688999999999999999998763

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.97  E-value=0.0052  Score=57.83  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=26.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      ++.-+.|.||+|+|||+|++.++..++ ..+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~   79 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN-STF   79 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT-CEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC-CCE
Confidence            456799999999999999999999987 544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.93  E-value=0.0042  Score=57.29  Aligned_cols=27  Identities=22%  Similarity=0.397  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..+.|.||+|+|||++++.+++.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999998874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.92  E-value=0.0047  Score=55.67  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|.+|+|.|+.||||||++..|++.+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3588999999999999999999999997

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.86  E-value=0.0044  Score=54.79  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+.+|+|||||||||++.+|.-.+.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35999999999999999999876665

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.85  E-value=0.0041  Score=52.65  Aligned_cols=26  Identities=42%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ++..++|+|++|+|||||+..|.+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.85  E-value=0.003  Score=60.25  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      .|.-++|+|++|+||||++..|.+. + ..+|+.|.+.+++
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g-~~lv~dD~~~i~~  181 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-G-HRLVADDNVEIRE  181 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-T-CEEEESSEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-C-CceecCCeEEEEE
Confidence            5788999999999999999999886 4 6788888886654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.84  E-value=0.0063  Score=57.57  Aligned_cols=28  Identities=32%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+++-+.|.||+|+|||+|++.+|..+.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~   70 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN   70 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC
Confidence            3457899999999999999999999883

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.84  E-value=0.0043  Score=51.86  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..++|+|++|+|||||+..+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.81  E-value=0.0047  Score=52.87  Aligned_cols=24  Identities=38%  Similarity=0.661  Sum_probs=21.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++|.||+|+|||++++.+++.+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999998763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.81  E-value=0.0038  Score=67.69  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=28.7

Q ss_pred             cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH
Q 019312           37 SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID   78 (343)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~   78 (343)
                      --|+++++.+          +++++++|.|+||||||+||..
T Consensus        32 hNLkni~v~i----------P~~~lvv~tG~SGSGKSSLafd   63 (972)
T 2r6f_A           32 HNLKNIDVEI----------PRGKLVVLTGLSGSGKSSLAFD   63 (972)
T ss_dssp             SSCCSEEEEE----------ETTSEEEEEESTTSSHHHHHTT
T ss_pred             ccCCceeeec----------cCCcEEEEECCCCCCHHHHHHH
Confidence            3688999998          8999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.80  E-value=0.0086  Score=50.50  Aligned_cols=26  Identities=31%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ....|+|+|++|+|||||+..+...-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            34578999999999999999987653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.80  E-value=0.0042  Score=58.49  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             EEEEcCCcccHHHHHHHHHhhc
Q 019312           62 VVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~   83 (343)
                      ++|+||+|+||||+++.+++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999954

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.80  E-value=0.0057  Score=58.73  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+++|+|++|||||||+..|.+.+.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            467999999999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.0066  Score=60.26  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ..++=+.+.||.|||||.||+++|..++ ..+++
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~  236 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIR  236 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC-CCeEE
Confidence            4566789999999999999999999998 55443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.78  E-value=0.0067  Score=58.11  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSE   87 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~e   87 (343)
                      .+..+.|.||+|+|||+|++.++..++ ..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~-~~  144 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG-AT  144 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT-CE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC-Ce
Confidence            467899999999999999999999886 44

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.77  E-value=0.0054  Score=51.79  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ...++|+|++|+|||||+..|++.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.76  E-value=0.0062  Score=57.07  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...+.|.||+|+|||++++.++..++
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999999887

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.75  E-value=0.0047  Score=58.01  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+..++|.||+|+|||||++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999877

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.74  E-value=0.0032  Score=68.09  Aligned_cols=31  Identities=39%  Similarity=0.693  Sum_probs=28.3

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHH
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSID   78 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~   78 (343)
                      -|+++++.+          +++++++|.|+||||||+||..
T Consensus        13 NLkni~~~i----------p~~~l~v~tG~SGSGKSsLafd   43 (916)
T 3pih_A           13 NLKNITVRI----------PKNRLVVITGVSGSGKSSLAMD   43 (916)
T ss_dssp             TCCSBCCEE----------ETTSEEEEEESTTSSSHHHHTT
T ss_pred             ccCcceecc----------CCCcEEEEECCCCCcHHHHHHH
Confidence            589999998          8999999999999999999853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.73  E-value=0.005  Score=58.64  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +.+.+|+||||||||||+.++.-
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998744

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.72  E-value=0.0041  Score=60.30  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=26.1

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+.++.++.|.||+|||||||+..++...
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45779999999999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.0074  Score=60.07  Aligned_cols=32  Identities=34%  Similarity=0.434  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .+++=+.+.||.|||||.||+++|..++ ..++
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~  244 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIG-ANFI  244 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEE
Confidence            4567889999999999999999999998 5543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.71  E-value=0.0049  Score=57.68  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..++|.||+|+|||+|++.++..+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35678999999999999999999977

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.70  E-value=0.0051  Score=61.40  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=25.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      +.-++++||+|+|||++++.||+.++ ..++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~-~~~~   79 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLAN-APFI   79 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcC-CCce
Confidence            45688999999999999999999998 5443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.0077  Score=59.92  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      +.++=+.+.||.|||||.||+++|..++ ..++
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~  244 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTN-ATFL  244 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhC-CCEE
Confidence            4567889999999999999999999998 5543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.69  E-value=0.0024  Score=52.95  Aligned_cols=26  Identities=12%  Similarity=0.065  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++|+.++....
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC
Confidence            35688999999999999999887654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.68  E-value=0.0044  Score=52.75  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -++|+|++|+|||||+..+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.66  E-value=0.0047  Score=61.45  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+++++||+||||||++..||..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.63  E-value=0.0075  Score=57.83  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      .+.-+.|.||+|+|||+|++.++..++ ..+
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~-~~~  112 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN-STF  112 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT-CEE
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC-CCE
Confidence            345688999999999999999999987 544

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.61  E-value=0.004  Score=58.53  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      |+|+||||+|||||++.|++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            389999999999999998875

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.61  E-value=0.0068  Score=52.81  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+++|.||.||||||++..++..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999997777654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.61  E-value=0.0072  Score=57.13  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.++|.||+|+|||+|++.+++.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHh
Confidence            3899999999999999999999885

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.57  E-value=0.0085  Score=57.85  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=25.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      +.-++|.||+|+|||+|++.++..++ ..+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~-~~~  176 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESN-ATF  176 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT-CEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc-CcE
Confidence            57899999999999999999999987 554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.56  E-value=0.0067  Score=52.07  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...|+|+|++|+|||||+..+...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0082  Score=59.22  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      .+++=+.+.||.|||||.||+++|..++ ..+++
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~  212 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTD-CKFIR  212 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEE
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhC-CCceE
Confidence            4456688999999999999999999998 65443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.54  E-value=0.0068  Score=57.32  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=24.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++++.+++.++
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999999986

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.50  E-value=0.0099  Score=59.74  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=24.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      +-+.|+||+|+|||+|++.+++..+ ..+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~-~~f   77 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEAN-VPF   77 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHT-CCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-CCe
Confidence            4488999999999999999999887 443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.48  E-value=0.0048  Score=52.50  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +..-|+|+|++|+|||||+..+....
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999987654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.44  E-value=0.0094  Score=60.03  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ....++|.||+|+|||++++.+++.++ ..++
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i  106 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDIL  106 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence            357899999999999999999999987 5543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.43  E-value=0.0067  Score=58.40  Aligned_cols=29  Identities=14%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++++.++.|.||+|||||||+..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999998654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.01  Score=50.35  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+...|+|+|++|||||||+..|....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.41  E-value=0.0077  Score=53.26  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=23.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +++|.++.|.|++|+|||+|+..++.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            56799999999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.36  E-value=0.0092  Score=53.38  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHH
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la   80 (343)
                      ..++.++|+|||||||||+...+.
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHH
Confidence            357899999999999998765543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.34  E-value=0.0098  Score=58.35  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +..+..++|+|++|+|||||.+.|.+.
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            466889999999999999999999983

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.34  E-value=0.0078  Score=56.64  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+..++|.||+|+|||++++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999877

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.33  E-value=0.0093  Score=56.19  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +..++|.||+|+|||+|+.+++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.33  E-value=0.009  Score=48.75  Aligned_cols=24  Identities=38%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-++|+|++|+|||||+..+.+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.01  Score=59.44  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .+++=+.+.||.|||||.||+++|..++ ..++
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi  272 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTD-ATFI  272 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEE
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccC-CCeE
Confidence            4567889999999999999999999998 5543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.30  E-value=0.0071  Score=56.03  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..++|.||+|+|||++++.++..++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999886

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.30  E-value=0.012  Score=48.89  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .+...|+|+|++|+|||||+..+...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.28  E-value=0.0093  Score=57.01  Aligned_cols=28  Identities=25%  Similarity=0.251  Sum_probs=25.6

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .++++.++.|.||+|||||+|+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999986

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.27  E-value=0.0087  Score=59.34  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+++|+|++||||||++..||..+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999886

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.27  E-value=0.0094  Score=48.88  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.24  E-value=0.011  Score=53.50  Aligned_cols=26  Identities=38%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++++.++...+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            45788999999999999999998875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.23  E-value=0.0093  Score=48.47  Aligned_cols=23  Identities=43%  Similarity=0.704  Sum_probs=20.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -|+|+|++|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58899999999999999998653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.22  E-value=0.0079  Score=50.81  Aligned_cols=26  Identities=19%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .+..-|+|+|++|+|||||+..+...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999999754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.21  E-value=0.0056  Score=60.94  Aligned_cols=28  Identities=25%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.+|+++|.+||||||+++.|++.+.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.20  E-value=0.0093  Score=50.78  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.18  E-value=0.013  Score=49.79  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-|+|+|++|+|||||+..|...-
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999997653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.18  E-value=0.012  Score=58.31  Aligned_cols=29  Identities=14%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|.+++|.|++|+|||||+..++....
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999998653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.18  E-value=0.015  Score=49.30  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ....|+|+|++|+|||||+..|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.17  E-value=0.013  Score=50.89  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ....++|+|++|+|||||+..|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.12  E-value=0.011  Score=48.10  Aligned_cols=23  Identities=39%  Similarity=0.686  Sum_probs=20.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.11  E-value=0.0099  Score=49.29  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-|+|+|++|+|||||+..+....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4578999999999999999998653

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.016  Score=57.68  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ..++=+.+.||.|+|||.||+++|..++ ..++
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi  245 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTS-ATFL  245 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEE
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhC-CCEE
Confidence            4567799999999999999999999988 5543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.09  E-value=0.0074  Score=56.79  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+++|+|++|+||||++..||..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999998875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.09  E-value=0.014  Score=57.70  Aligned_cols=28  Identities=32%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.-+.|.||+|+|||+|++.+|..+.
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~  192 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEAN  192 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3457899999999999999999999883

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.09  E-value=0.048  Score=55.26  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=35.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc-CCCceecCCceEEEecccccCCCCCcccccccCccc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF-FPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHL  119 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~-~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~l  119 (343)
                      .++..++|+|+||||||++++.|...+ ...   +.+.+++| .+|....  ......++||-+
T Consensus       165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~-liDpK~~--el~~~~~lPhl~  222 (512)
T 2ius_A          165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFI-MIDPKML--ELSVYEGIPHLL  222 (512)
T ss_dssp             GGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEE-EECCSSS--GGGGGTTCTTBS
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEE-EECCchh--hhhhhccCCccc
Confidence            457889999999999999999886522 101   25677655 4554321  122344667643

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.09  E-value=0.012  Score=55.59  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..++|.||+|+|||++++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.06  E-value=0.011  Score=55.23  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=21.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.|.||+|+|||++++.+++.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.05  E-value=0.012  Score=48.00  Aligned_cols=23  Identities=30%  Similarity=0.625  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.04  E-value=0.012  Score=51.32  Aligned_cols=27  Identities=37%  Similarity=0.327  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +...++|+|++|||||||+..|+..+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            346899999999999999999988754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.04  E-value=0.011  Score=58.88  Aligned_cols=27  Identities=30%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.+|+|+|++||||||++..||..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999998664

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.04  E-value=0.012  Score=48.26  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      --|+|+|++|+|||||+..+....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.03  E-value=0.011  Score=52.75  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=21.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ...|+|+|++|+|||||+..|.+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCC
Confidence            4578999999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.03  E-value=0.012  Score=48.85  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-|+|+|++|||||||+..+....
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            3568999999999999999887643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.01  E-value=0.012  Score=48.29  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.01  E-value=0.012  Score=48.13  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -|+|+|++|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999987643

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.01  E-value=0.013  Score=54.81  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||+|++.++..++
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45788999999999999999999887

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.00  E-value=0.013  Score=49.13  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999998864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.00  E-value=0.011  Score=55.82  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++++.++.|.||+|||||+|+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            45789999999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.99  E-value=0.012  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.98  E-value=0.014  Score=54.93  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=25.3

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+|.+++|.|++|+|||||+..++...
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999998654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.97  E-value=0.009  Score=51.78  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            357899999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.96  E-value=0.0094  Score=55.87  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ...++|+|++|+|||||+..|.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            458999999999999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=94.93  E-value=0.016  Score=55.31  Aligned_cols=32  Identities=13%  Similarity=0.205  Sum_probs=24.3

Q ss_pred             ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           38 RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .+++++++.             +.|+|+|++|||||||+..|.+.
T Consensus        26 ~l~~i~~~l-------------p~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           26 ALPTLWDSL-------------PAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CC----CCC-------------CEEEEECBTTSSHHHHHHHHHTS
T ss_pred             ccccccccC-------------CEEEEECCCCCcHHHHHHHHhCC
Confidence            566776665             48999999999999999999983

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.93  E-value=0.014  Score=48.06  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.90  E-value=0.014  Score=47.78  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|+|||||+..+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=94.90  E-value=0.01  Score=59.72  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++ +.+|+|+||||||+|+.+|.-.+.
T Consensus        59 ~~g-~n~i~G~NGaGKS~lleAl~~llg   85 (517)
T 4ad8_A           59 GGG-FCAFTGETGAGKSIIVDALGLLLG   85 (517)
T ss_dssp             CCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred             CCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence            344 999999999999999999977754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.90  E-value=0.013  Score=48.51  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46899999999999999998754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.89  E-value=0.017  Score=57.20  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.-+.+.||+|+|||++|+.+|+.++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            346788999999999999999999986

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.88  E-value=0.016  Score=57.55  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++|.||+|+|||||++.+++.++
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4689999999999999999999987

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.87  E-value=0.013  Score=48.86  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..|...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            357899999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.87  E-value=0.014  Score=48.38  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.86  E-value=0.013  Score=48.26  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|+|||||+..+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999998754

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.84  E-value=0.018  Score=50.82  Aligned_cols=27  Identities=30%  Similarity=0.244  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+++++++.||.||||||.+..++..+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999999988876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.83  E-value=0.015  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.82  E-value=0.014  Score=48.41  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.78  E-value=0.013  Score=57.94  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +..++|.||+|+|||+|++.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999876

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=94.77  E-value=0.016  Score=52.40  Aligned_cols=28  Identities=25%  Similarity=0.163  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++|.||+|+||||++..++..+.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~   37 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLE   37 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4578999999999999999998887663

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.76  E-value=0.02  Score=47.08  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...|+|+|++|+|||||+..+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4467899999999999999999653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.73  E-value=0.01  Score=55.44  Aligned_cols=24  Identities=38%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.|.||+|+|||++++.++..++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            488999999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.72  E-value=0.022  Score=57.31  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      ..+.-+.|.||+|+|||++++.++..++ ..+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~-~~f  266 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETG-AFF  266 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCS-SEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhC-CCE
Confidence            3456789999999999999999999886 443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.70  E-value=0.017  Score=50.51  Aligned_cols=27  Identities=30%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +...|+|+|.+|||||||+..++....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            346889999999999999999998753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.67  E-value=0.017  Score=48.34  Aligned_cols=24  Identities=42%  Similarity=0.661  Sum_probs=20.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      --|+|+|++|+|||||+..|....
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999998643

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=94.66  E-value=0.027  Score=50.11  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=18.7

Q ss_pred             CCCCEEEEEcCCcccHHH-HHHHHHh
Q 019312           57 KKDKLVVIMGATGTGKSG-LSIDLAT   81 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKSt-la~~la~   81 (343)
                      ..+++.+|.||.|||||| |++.+..
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n   43 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRR   43 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHH
Confidence            347899999999999995 4444443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.65  E-value=0.017  Score=48.39  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.64  E-value=0.014  Score=54.85  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .++++.++.|.||+|||||+|+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4577899999999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.64  E-value=0.017  Score=48.80  Aligned_cols=23  Identities=43%  Similarity=0.676  Sum_probs=20.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..|...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999999865

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.64  E-value=0.018  Score=48.51  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..|.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.64  E-value=0.014  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..|...
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.63  E-value=0.02  Score=56.94  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=22.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..-++|+||+|+|||++++.+++.+.
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            44678999999999999999999874

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.62  E-value=0.017  Score=47.87  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.60  E-value=0.018  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|+|||||+..+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999754

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.60  E-value=0.02  Score=54.48  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -.|.-++|.|++|+||||++..|.+. + ..+|+.|.+.+.+
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~~-G-~~lv~DD~v~i~~  184 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLINK-N-HLFVGDDAIEIYR  184 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTT-T-CEEEEEEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-C-CEEEeCCEEEEEE
Confidence            35778999999999999999998763 4 6788888886553

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.60  E-value=0.02  Score=48.57  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.59  E-value=0.017  Score=49.23  Aligned_cols=24  Identities=33%  Similarity=0.657  Sum_probs=20.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            347899999999999999888764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.59  E-value=0.016  Score=47.61  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            35899999999999999988654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.58  E-value=0.018  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-|+|+|++|+|||||+..|....
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999988743

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.58  E-value=0.053  Score=51.82  Aligned_cols=27  Identities=30%  Similarity=0.324  Sum_probs=23.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..+|+|+|+.|+|||||+..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999998876

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.56  E-value=0.02  Score=48.21  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=21.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      --|+|+|++|+|||||++.+.+.+.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4689999999999999988887665

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.02  Score=54.57  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=24.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++..+.|.||+|+|||++++.+++.+.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.55  E-value=0.019  Score=47.64  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .--|+|+|++|+|||||+..+....
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCc
Confidence            3468899999999999999998643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.55  E-value=0.019  Score=55.31  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=22.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..++|+||||||||++++.++..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999998765

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.55  E-value=0.017  Score=55.59  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +.+.+|+|+||||||+|.-+|.=
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            36999999999999999888864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.54  E-value=0.028  Score=52.67  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=22.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++|+.++...+
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCc
Confidence            45688999999999999999998653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.53  E-value=0.013  Score=58.08  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSD   92 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~D   92 (343)
                      ++.+|+|+|++|+||||++..||..+.    ..-+|++|
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            356999999999999999999998763    13455555

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.50  E-value=0.02  Score=48.88  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.47  E-value=0.016  Score=48.69  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|+|||||+..+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.46  E-value=0.038  Score=50.51  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=22.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+.+.++.||.||||||.+..++...
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~   43 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRF   43 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            458999999999999998888777654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.45  E-value=0.023  Score=53.50  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||.|+|||++++.+++.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999999886

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.44  E-value=0.021  Score=47.54  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998764

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.42  E-value=0.039  Score=49.78  Aligned_cols=27  Identities=30%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++.+.++.||.||||||.+..++...
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            458899999999999999999988765

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.39  E-value=0.021  Score=58.26  Aligned_cols=27  Identities=30%  Similarity=0.234  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+|+|+|++||||||+++.|++.++
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            467899999999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.39  E-value=0.02  Score=47.99  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-|+|+|++|+|||||+..+....
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3578999999999999999987643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.35  E-value=0.016  Score=49.15  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .....|+|+|++|+|||||+..+...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            34567899999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.35  E-value=0.022  Score=47.34  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .--|+|+|++|+|||||+..+....
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            3468999999999999999987643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.33  E-value=0.023  Score=50.39  Aligned_cols=26  Identities=19%  Similarity=0.454  Sum_probs=23.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++|+|=|+-||||||++..|++.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            46899999999999999999999885

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.31  E-value=0.023  Score=47.43  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=94.30  E-value=0.021  Score=49.71  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ....|+|+|++|+|||||+..|.+.-
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34678999999999999999987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.27  E-value=0.019  Score=49.10  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..|...
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.26  E-value=0.032  Score=48.00  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-|+|+|++|+|||||+..+....
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999988643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.26  E-value=0.022  Score=48.12  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.25  E-value=0.02  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.23  E-value=0.024  Score=48.45  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-|+|+|++|+|||||+..|....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4578999999999999999997653

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.23  E-value=0.029  Score=51.53  Aligned_cols=25  Identities=28%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..+.|.||+|+|||++++.+++.+.
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3589999999999999999999864

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=94.21  E-value=0.026  Score=51.68  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=28.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|+.||||||++..|...++ ..+++.+..
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g-~~~~~~~~~   35 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYS-AVKYQLAGP   35 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC-EEECCTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC-CeEEecChH
Confidence            4799999999999999999998777 666655544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.21  E-value=0.024  Score=47.87  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-|+|+|++|+|||||+..|....
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.21  E-value=0.027  Score=48.04  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=20.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999877654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.20  E-value=0.023  Score=54.85  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ++++.++.|.|++|||||||+..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.16  E-value=0.032  Score=49.96  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=23.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..+++++|..|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            556789999999999999999999665

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.16  E-value=0.021  Score=48.40  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...++|+|++|+|||||+..+...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.13  E-value=0.026  Score=52.47  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.++.+.||+|+|||++++.+++.++
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            46778889999999999999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.13  E-value=0.018  Score=48.11  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHH
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLA   80 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la   80 (343)
                      +...|+|+|++|+|||||+..+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            35678999999999999998876

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.12  E-value=0.025  Score=47.95  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..|...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            457899999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.11  E-value=0.025  Score=48.22  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      --|+|+|++|+|||||+..+....
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.10  E-value=0.025  Score=47.09  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.09  E-value=0.026  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..|+|+|++|||||||...|.+.
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.07  E-value=0.029  Score=48.03  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..-|+|+|++|+|||+|+..+...+.
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3456789999999999999988776554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.07  E-value=0.023  Score=48.34  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .--|+|+|++|+|||||+..+....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3478999999999999999998754

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=94.06  E-value=0.13  Score=48.89  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      ...+.|+|+||   ||++|...|...++       |.+    +..+..      ++                ++....|.
T Consensus       143 ~~~RPvVl~GP---~k~~l~~~L~~~~P-------~~F----~~~v~~------~r----------------~i~~~~fi  186 (308)
T 3kfv_A          143 SFKRPVVILGP---VADIAMQKLTAEMP-------DQF----EIAETV------SR----------------TDSPSKII  186 (308)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCT-------TTE----EECCCC------------------------------CC
T ss_pred             CCCCeEEEeCc---cHHHHHHHHHHhCc-------ccc----cccccc------cc----------------cccCCCee
Confidence            44577899999   69999999998876       333    222210      00                01122333


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                        ....|.++.++|+.+||-              +|++..        +.+.....+.+.+|.++++.++|.+| ..|
T Consensus       187 --s~~~V~~vl~~Gk~~ILD--------------Id~QGa--------~~lk~~~~~pi~IFI~PPS~eeL~~r-r~R  239 (308)
T 3kfv_A          187 --KLDTVRVIAEKDKHALLD--------------VTPSAI--------ERLNYVQYYPIVVFFIPESRPALKAL-RQW  239 (308)
T ss_dssp             --CHHHHHHHHHTTCEEEEC--------------CCHHHH--------HHHHHTTCCCEEEEEEESCHHHHHHH-HHH
T ss_pred             --cHHHHHHHHHCCCcEEEE--------------ECHHHH--------HHHHhcCCCCEEEEEeCCCHHHHHHH-Hhc
Confidence              567888999999988773              233221        01111112346678889999999997 445

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.05  E-value=0.026  Score=47.17  Aligned_cols=23  Identities=30%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~   81 (343)
                      ..-|+|+|++|+|||||+..+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35789999999999999999884

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.05  E-value=0.027  Score=55.83  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ++.+|+|+|++|+||||++..||..+
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999665

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.02  E-value=0.031  Score=55.11  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+|.+++|.|++|+|||+|+..++...
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999998765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.02  E-value=0.028  Score=47.76  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46889999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.01  E-value=0.036  Score=46.10  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.01  E-value=0.02  Score=54.90  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=23.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.++.++.|.||+|+|||+|+..++..
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            356778899999999999999999876

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.98  E-value=0.028  Score=47.26  Aligned_cols=25  Identities=12%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +..-|+|+|++|+|||||+..+...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.97  E-value=0.029  Score=47.83  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.96  E-value=0.029  Score=48.09  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +..-|+|+|++|+|||||+..+....
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34678999999999999999997643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.94  E-value=0.022  Score=47.98  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .-|+|+|++|+|||||+..|....
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            478999999999999999997653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=93.93  E-value=0.034  Score=49.01  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ...|+|+|++|+|||||+..|.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467899999999999999988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.91  E-value=0.029  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=93.90  E-value=0.028  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-|+|+|++|+|||||+..|....
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4568999999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.90  E-value=0.03  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.--|+|+|++|+|||||+..+...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3467899999999999999988754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.89  E-value=0.028  Score=48.25  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=93.89  E-value=0.031  Score=51.12  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=21.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+.|.||+|+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            38999999999999999999986

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.87  E-value=0.034  Score=59.32  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .+++=|.+.||.|+|||+|++++|..++ ..++
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg-~~~~  267 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETG-AFFF  267 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTT-CEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC-CeEE
Confidence            4567889999999999999999999987 5443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.86  E-value=0.035  Score=47.99  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +...|+|+|++|+|||||+..+....
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678999999999999999998643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.84  E-value=0.026  Score=54.53  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.++|+|+||||||||+..|.+..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            469999999999999999998653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.81  E-value=0.036  Score=53.25  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=25.4

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..++.+++|.|++|+|||||+..+|...
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4779999999999999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.78  E-value=0.033  Score=47.84  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ...-|+|+|++|+|||||+..+...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999998854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.78  E-value=0.033  Score=50.19  Aligned_cols=25  Identities=28%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...|+|+|++|+|||||+..|.+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999864

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.71  E-value=0.036  Score=50.84  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++|.||.|+|||++++.+++.+.
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            389999999999999999998863

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.68  E-value=0.037  Score=46.73  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...|+|+|++|+|||||+..+...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999998853

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.68  E-value=0.032  Score=48.51  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.66  E-value=0.039  Score=57.97  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.-++|+||+|+|||++++.||+.+.
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            45688999999999999999999873

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=93.66  E-value=0.036  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .--|+|+|++|+|||||+..+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            357899999999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.65  E-value=0.035  Score=47.66  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|.+|+|||||+..+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.65  E-value=0.041  Score=50.86  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=23.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+++|.||.|+|||+|++.+++..+
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence            37999999999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=93.62  E-value=0.031  Score=48.13  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=19.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++|+|||||+..+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.56  E-value=0.027  Score=48.57  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|++|+|||||+..+.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhc
Confidence            357899999999999999998643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.54  E-value=0.035  Score=56.16  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999655

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.53  E-value=0.039  Score=51.02  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+++|.||.|+|||+|+..+++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            5999999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.47  E-value=0.034  Score=54.71  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ...++|+|++|+|||||+..|.+..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            4589999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.44  E-value=0.039  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .-|+|+|++|+|||||+..+...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.42  E-value=0.036  Score=52.90  Aligned_cols=26  Identities=38%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ....++|+|++|+|||||+..|++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=93.38  E-value=0.039  Score=55.74  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=23.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||+||+.|+..+.
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHHh
Confidence            56889999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.15
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.11
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.11
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.1
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.08
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.03
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.02
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.92
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.91
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.9
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.89
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.87
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.85
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.84
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.83
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.82
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.78
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.78
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.76
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.75
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.7
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.69
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.64
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.57
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.54
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.53
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.51
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.46
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.44
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.3
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.3
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.16
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.1
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.05
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.04
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.0
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.96
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.94
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.93
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.87
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.83
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.82
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.81
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.77
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.77
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.76
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.67
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.64
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.63
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.62
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.51
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.46
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.33
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.29
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.28
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.2
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.16
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.01
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.95
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.93
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.9
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.87
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.85
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.81
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.8
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.79
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.78
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.68
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.66
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.61
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.59
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.58
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.53
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.52
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.44
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.43
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.42
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.41
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.35
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.31
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.27
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.23
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.18
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.11
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.11
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.11
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.06
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.03
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.01
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.92
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.83
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.8
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.8
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.78
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.77
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.76
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.73
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.72
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.72
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.71
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.63
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.54
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.48
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.42
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.28
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.25
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.24
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.23
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.22
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.11
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.09
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.97
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.91
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.8
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.75
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.67
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.66
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.64
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.55
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.54
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.52
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.44
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.38
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.33
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.27
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.26
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.26
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.25
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.25
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.23
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.98
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.97
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.95
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.91
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.87
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.85
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.82
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.82
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.78
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.7
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.65
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.61
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.57
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.55
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.5
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.5
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.48
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.37
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.35
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.35
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.35
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.31
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.28
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.27
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.23
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.16
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.86
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.82
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.77
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.7
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.68
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.65
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.46
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.36
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.36
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.27
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.27
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.18
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.13
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.09
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.03
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.81
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.7
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.57
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.45
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.45
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.34
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.28
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.47
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.31
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	89.86
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.84
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.6
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.26
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.22
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.13
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.7
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.69
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.46
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.39
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	88.38
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.63
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.61
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	86.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.38
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	86.01
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	84.76
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.2
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.78
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.43
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.77

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=9.7e-12  Score=110.01  Aligned_cols=125  Identities=16%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      |++++|+||||||||||...|....+ .     ..+  ....+.+|..|.+.|..|+.||+++.-.+.+ ....+.|.+.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p-~-----~~~--~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~-~i~~g~flE~   72 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP-L-----YDT--QVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE-MISRDAFLEH   72 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC-T-----TTE--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC-c-----cCc--eEEEEEeccCCCccccccccceeecHHHHHH-HhhhhhheeE
Confidence            78999999999999999999999876 2     222  3345668999999999999999998777666 5555555543


Q ss_pred             h----------hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHH
Q 019312          139 A----------DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLY  208 (343)
Q Consensus       139 a----------~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~  208 (343)
                      +          ...+..+.+.|+.+|+.. ..-.+..+...                     ....+.+|+++++.++|.
T Consensus        73 ~~~~g~~YGt~~~~v~~~~~~g~~~ildi-d~~g~~~lk~~---------------------~~~~~~ifi~pps~~~l~  130 (205)
T d1s96a_          73 AEVFGNYYGTSREAIEQVLATGVDVFLDI-DWQGAQQIRQK---------------------MPHARSIFILPPSKIELD  130 (205)
T ss_dssp             EEETTEEEEEEHHHHHHHHTTTCEEEEEC-CHHHHHHHHHH---------------------CTTCEEEEEECSSHHHHH
T ss_pred             EEECCceeccccchHHHHHhcCCceeecC-cHHHHHHHHhh---------------------hcccceeeeeccchHHHH
Confidence            3          467888888899877753 22222222211                     112345667889999999


Q ss_pred             HHHHHH
Q 019312          209 DYLNKR  214 (343)
Q Consensus       209 ~RI~~R  214 (343)
                      +|+.+|
T Consensus       131 ~RL~~R  136 (205)
T d1s96a_         131 RRLRGR  136 (205)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999888

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.18  E-value=6.5e-12  Score=115.05  Aligned_cols=79  Identities=18%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             CCCCCCCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecC
Q 019312           12 ACYHHQQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINS   91 (343)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~   91 (343)
                      +.|-...++++++.+|+|.|+...+.+|+++++++          ++|++++|+||||||||||++.|++.+.|.    .
T Consensus         7 ~~pl~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i----------~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~----~   72 (255)
T d2hyda1           7 AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSI----------EKGETVAFVGMSGGGKSTLINLIPRFYDVT----S   72 (255)
T ss_dssp             CCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHTTTTTSSCCS----E
T ss_pred             CCCCCCCCCEEEEEEEEEEeCCCCCcceeceEEEE----------cCCCEEEEECCCCCcHHHHHHHHHhcCCcc----c
Confidence            44455667899999999999988888999999998          999999999999999999999999999865    6


Q ss_pred             CceEEEecccccCC
Q 019312           92 DKMQVYKGLDITTN  105 (343)
Q Consensus        92 Ds~qvy~gl~I~T~  105 (343)
                      |++ .+.|.++...
T Consensus        73 G~I-~i~g~~i~~~   85 (255)
T d2hyda1          73 GQI-LIDGHNIKDF   85 (255)
T ss_dssp             EEE-EETTEEGGGS
T ss_pred             ccc-ccCCEEcccC
Confidence            888 4788888543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=2e-11  Score=104.64  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh--
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR--  136 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~--  136 (343)
                      |++|+|+||+|||||||++.|.+.++ .         ++.-...+|.+|+..|..|+.||+++.-.+.. ....+.|.  
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~-~---------~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~-~~~~~~f~e~   70 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP-N---------LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ-LIDQGELLEW   70 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST-T---------CEECCCEESSCCCTTCCBTTTBEECCHHHHHH-HHHTTCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC-C---------CeEEEEeeccCCCccccCCcceeeccchhhhh-hhcccccchh
Confidence            78999999999999999999998876 2         13345678999988999999999887554433 22222221  


Q ss_pred             ----------hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHH
Q 019312          137 ----------LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQL  206 (343)
Q Consensus       137 ----------~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~  206 (343)
                                ......+.++...|+.+++.+ +--.++.+...                     ....+.+|.++++.++
T Consensus        71 ~~~~~~~~~~g~~~~~~~~~~~~g~~~i~~~-~~~g~~~l~~~---------------------~~~~~~i~i~~~s~e~  128 (182)
T d1znwa1          71 AEIHGGLHRSGTLAQPVRAAAATGVPVLIEV-DLAGARAIKKT---------------------MPEAVTVFLAPPSWQD  128 (182)
T ss_dssp             EEEGGGTEEEEEEHHHHHHHHHHTCCEEEEC-CHHHHHHHHHH---------------------CTTSEEEEEECSCHHH
T ss_pred             hhcccCccccccccchhhhhhhcCCcccccc-ccchhhhhhhc---------------------CcceeEEeeecccHHH
Confidence                      122345666667777655543 32222222211                     1123456667788999


Q ss_pred             HHHHHHHHH
Q 019312          207 LYDYLNKRV  215 (343)
Q Consensus       207 L~~RI~~Rv  215 (343)
                      |.+|+.+|-
T Consensus       129 L~~RL~~Rg  137 (182)
T d1znwa1         129 LQARLIGRG  137 (182)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHhhhcC
Confidence            999998884

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=7.4e-12  Score=113.75  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      |++.+|+|.|+...+.+|+++++++          ++|+.++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i----------~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~----~G~I-~i~g~~   66 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSI----------KQGEVIGIVGRSGSGKSTLTKLIQRFYIPE----NGQV-LIDGHD   66 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHhcCCCC----CCEE-EECCEE
Confidence            7899999999988888999999998          999999999999999999999999999865    6888 488998


Q ss_pred             ccCC
Q 019312          102 ITTN  105 (343)
Q Consensus       102 I~T~  105 (343)
                      +...
T Consensus        67 i~~~   70 (241)
T d2pmka1          67 LALA   70 (241)
T ss_dssp             TTTS
T ss_pred             eccc
Confidence            8643

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.12  E-value=2.4e-11  Score=110.33  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=61.1

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+|.|+...+ +|+++++++          ++|++++|+||||||||||++.|++.+.|.    .|++ .+.|.+
T Consensus         2 le~knvsf~Y~~~~~-vL~~isl~i----------~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~----~G~I-~i~g~~   65 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQ-ILRDISFEA----------QPNSIIAFAGPSGGGKSTIFSLLERFYQPT----AGEI-TIDGQP   65 (242)
T ss_dssp             EEEEEEEECSSSSSC-SEEEEEEEE----------CTTEEEEEECCTTSSHHHHHHHHTTSSCCS----BSCE-EETTEE
T ss_pred             EEEEEEEEECCCCCc-eeeeeEEEE----------cCCCEEEEECCCCCCHHHHHHHHHHhhCCC----CCEE-EECCEE
Confidence            678999999987654 899999998          999999999999999999999999999865    7999 588999


Q ss_pred             ccCCC
Q 019312          102 ITTNK  106 (343)
Q Consensus       102 I~T~k  106 (343)
                      +....
T Consensus        66 i~~~~   70 (242)
T d1mv5a_          66 IDNIS   70 (242)
T ss_dssp             STTTS
T ss_pred             ecccc
Confidence            86544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=2.8e-11  Score=110.63  Aligned_cols=72  Identities=18%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             ccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           19 QQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      .+.+++.+|+|.|+.....+|+++++++          ++|++++|+||||||||||++.|++.+.|.    .|++ .+.
T Consensus        11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i----------~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~----~G~I-~i~   75 (253)
T d3b60a1          11 TGDLEFRNVTFTYPGREVPALRNINLKI----------PAGKTVALVGRSGSGKSTIASLITRFYDID----EGHI-LMD   75 (253)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEE----------CTTCEEEEEECTTSSHHHHHHHHTTTTCCS----EEEE-EET
T ss_pred             ceEEEEEEEEEEeCCCCCceeeceEEEE----------cCCCEEEEECCCCChHHHHHHHHhcccCCC----ccEE-EEC
Confidence            3579999999999988777999999998          899999999999999999999999999865    6888 488


Q ss_pred             cccccCC
Q 019312           99 GLDITTN  105 (343)
Q Consensus        99 gl~I~T~  105 (343)
                      |.++...
T Consensus        76 g~~i~~~   82 (253)
T d3b60a1          76 GHDLREY   82 (253)
T ss_dssp             TEETTTB
T ss_pred             Ccccchh
Confidence            9887543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=111.12  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=64.3

Q ss_pred             CccceeecccCCcCCccc-ccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEE
Q 019312           18 QQQHYSSFYSPFLHPKRR-RSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQV   96 (343)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qv   96 (343)
                      .+..|++.+|+|.||... ..+|+++++++          ++|++++|+||||||||||++.|++.+.|.    .|++ .
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i----------~~Ge~vaivG~sGsGKSTLl~li~gl~~p~----~G~I-~   72 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTL----------RPGEVTALVGPNGSGKSTVAALLQNLYQPT----GGQL-L   72 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-E
T ss_pred             ccceEEEEEEEEECCCCCCCEeEeceEEEE----------cCCCEEEEECCCCCcHHHHHHHHhcccCCC----cCEE-E
Confidence            457899999999998754 34899999998          999999999999999999999999999865    6888 5


Q ss_pred             EecccccCCC
Q 019312           97 YKGLDITTNK  106 (343)
Q Consensus        97 y~gl~I~T~k  106 (343)
                      +.|.++....
T Consensus        73 i~g~~i~~~~   82 (251)
T d1jj7a_          73 LDGKPLPQYE   82 (251)
T ss_dssp             ETTEEGGGBC
T ss_pred             ECCEecchhh
Confidence            8899986544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=7.4e-11  Score=101.84  Aligned_cols=124  Identities=17%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhh--
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRL--  137 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~--  137 (343)
                      +.|+|+||||||||||++.|++.++ .      .+  ......+|..|...|..|..||+++...... ....+.|.+  
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~-~------~~--~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~-~~~~g~f~e~~   71 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP-D------SF--GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS-MIKNNEFIEWA   71 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT-T------TE--EECCEEECSCCCTTCCBTTTEEECCHHHHHH-HHHTTCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC-c------ce--eEEEeeccCCCCCCCcCCccceeccHHHHHH-HHhcccceeee
Confidence            3588999999999999999999886 2      22  4466778998888999999999987665544 333333332  


Q ss_pred             --------hhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCC-ceEEEEEeCCHHHHH
Q 019312          138 --------QADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRY-NCCFLWVDSSLQLLY  208 (343)
Q Consensus       138 --------~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~-~~~~i~L~~~re~L~  208 (343)
                              .....+..+...|+.+|+. ++...++.+-.                     .... ...+|+++++.+.|.
T Consensus        72 ~~~g~~Yg~~~~~i~~~~~~g~~~i~~-~~~~~~~~lk~---------------------~~~~~~~~i~~~~~~~e~l~  129 (186)
T d1gkya_          72 QFSGNYYGSTVASVKQVSKSGKTCILD-IDMQGVKSVKA---------------------IPELNARFLFIAPPSVEDLK  129 (186)
T ss_dssp             EETTEEEEEEHHHHHHHHHHTSEEEEE-CCHHHHHHHHT---------------------CGGGCCEEEEEECSCHHHHH
T ss_pred             EEccceeecchhhHHHHhcCCCeEEec-chHHHHHHHHH---------------------hhcccceEEEecCCcHHHHH
Confidence                    2346677777788865554 43332333211                     0111 234667888999999


Q ss_pred             HHHHHHH
Q 019312          209 DYLNKRV  215 (343)
Q Consensus       209 ~RI~~Rv  215 (343)
                      +|+.+|-
T Consensus       130 ~RL~~Rg  136 (186)
T d1gkya_         130 KRLEGRG  136 (186)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhc
Confidence            9999984

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=9.3e-11  Score=101.74  Aligned_cols=123  Identities=18%  Similarity=0.106  Sum_probs=83.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh----
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR----  136 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~----  136 (343)
                      .|+|+||+|||||||++.|++.++ .      .+  ......+|..+...|..++.||+++...+.. ....+.|.    
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~-~------~~--~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~-~~~~g~~~e~~~   71 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS-S------IF--GFSVSHTTRNPRPGEEDGKDYYFVTREMMQR-DIAAGDFIEHAE   71 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT-T------TE--EECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHHTCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC-C------ce--eEEEEEeccCCCCCCccCceeEEeehhHHHH-HhhhhhheeeeE
Confidence            478999999999999999999987 2      11  3355667888888999999999887655543 33333332    


Q ss_pred             ------hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHH
Q 019312          137 ------LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDY  210 (343)
Q Consensus       137 ------~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~R  210 (343)
                            ......+.++...|+++++.. ....++.+-..                     ....+.++.++++.++|.+|
T Consensus        72 ~~~~~Yg~~~~~v~~~~~~g~~~~~~~-~~~~~~~l~~~---------------------~~~~~~I~i~~~~~e~l~~R  129 (190)
T d1lvga_          72 FSGNLYGTSKEAVRAVQAMNRICVLDV-DLQGVRSIKKT---------------------DLCPIYIFVQPPSLDVLEQR  129 (190)
T ss_dssp             ETTEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHTTS---------------------SCCCEEEEEECSCHHHHHHH
T ss_pred             EcCcceecccchhhhhhcCCCceeecc-hHhhhhhhhhc---------------------cccceEEEEecchHHHHHHH
Confidence                  223466788888888766544 33333333211                     01124456677889999999


Q ss_pred             HHHHH
Q 019312          211 LNKRV  215 (343)
Q Consensus       211 I~~Rv  215 (343)
                      |.+|-
T Consensus       130 L~~R~  134 (190)
T d1lvga_         130 LRLRN  134 (190)
T ss_dssp             HHHHT
T ss_pred             Hhhcc
Confidence            99883

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1e-10  Score=105.51  Aligned_cols=70  Identities=14%  Similarity=0.058  Sum_probs=59.7

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      |++.++++.|..  ..+++++++++          .+|++++|+||||||||||++.+++...|.    +|++ .+.|.+
T Consensus         1 Iev~nv~k~yg~--~~~l~~isl~i----------~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~----sG~I-~i~g~~   63 (232)
T d2awna2           1 VQLQNVTKAWGE--VVVSKDINLDI----------HEGEFVVFVGPSGCGKSTLLRMIAGLETIT----SGDL-FIGEKR   63 (232)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EESSSC
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEE----------cCCCEEEEECCCCChHHHHHHHHhcCCCCC----CCEE-EECCEE
Confidence            567888888853  44899999998          999999999999999999999999998865    7889 589999


Q ss_pred             ccCCCCC
Q 019312          102 ITTNKIP  108 (343)
Q Consensus       102 I~T~kp~  108 (343)
                      |...++.
T Consensus        64 i~~~~~~   70 (232)
T d2awna2          64 MNDTPPA   70 (232)
T ss_dssp             CTTSCGG
T ss_pred             CCCCchh
Confidence            9765543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2e-10  Score=99.02  Aligned_cols=87  Identities=15%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ++|+|+||||||||||++.|.+.++ .      .+  ..-...+|..|++.|..|+.||+++.-.+.+ ....+.|.+.+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~-~------~~--~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~-~~~~g~fie~~   73 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP-D------RF--AYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ-DISNNEYLEYG   73 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT-T------TE--ECCCCEECSCC---CCBTTTBEECCHHHHHH-HHHTTCEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC-c------Ce--eeccccccCCCCCccccCccceeeehhhhhh-heecCceEEEe
Confidence            6899999999999999999998876 2      22  3345668899999999999999988666554 44444454433


Q ss_pred             ----------hHHHHHHHhcCCeeEEE
Q 019312          140 ----------DNAISDIISRKKTPLLV  156 (343)
Q Consensus       140 ----------~~~i~~i~~~g~~pIlv  156 (343)
                                ...+.++.+.|+++|+.
T Consensus        74 ~~~g~~YGt~~~~i~~~~~~g~~~ild  100 (178)
T d1kgda_          74 SHEDAMYGTKLETIRKIHEQGLIAILD  100 (178)
T ss_dssp             EETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred             eecccceeeeeecccchhccCceEEec
Confidence                      36788888899998875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.92  E-value=1.8e-10  Score=103.74  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             eeecccCCcCCccccc--ccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRRRS--RWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|+.+...  +|+++++++          .+|++++|+||||||||||++.|++...|.    +|++ .|.|
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i----------~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~----sG~I-~~~g   66 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNI----------KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT----EGEV-YIDN   66 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEE----------CTTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEE----------cCCCEEEEECCCCCCcchhhHhccCCCCCC----ccee-EECC
Confidence            5678888888766543  699999998          999999999999999999999999998864    7888 5899


Q ss_pred             ccccCCCC
Q 019312          100 LDITTNKI  107 (343)
Q Consensus       100 l~I~T~kp  107 (343)
                      .++...++
T Consensus        67 ~~i~~~~~   74 (230)
T d1l2ta_          67 IKTNDLDD   74 (230)
T ss_dssp             EECTTCCH
T ss_pred             EEcCcCCh
Confidence            99976543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1e-09  Score=91.26  Aligned_cols=37  Identities=24%  Similarity=0.594  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+++++|+||+||||||+++.|++.++ .+.++.|.+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~-~~~~~~d~~   40 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFL   40 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeechhhh
Confidence            4578999999999999999999999998 777777665

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.90  E-value=2.7e-10  Score=103.28  Aligned_cols=70  Identities=14%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|+.+.-.+|+++++++          .+|++++|+||||||||||++.|++...|.    .|++ .+.|.
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i----------~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~----~G~I-~~~g~   67 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINI----------ENGERFGILGPSGAGKTTFMRIIAGLDVPS----TGEL-YFDDR   67 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEE----------CTTCEEEEECSCHHHHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEE----------CCCCEEEEECCCCCcHHHHHHHHHcCcCCC----CceE-EECCE
Confidence            47889999999877666899999998          999999999999999999999999998865    7888 58899


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        68 ~i~~~   72 (242)
T d1oxxk2          68 LVASN   72 (242)
T ss_dssp             EEEET
T ss_pred             EeecC
Confidence            88643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.89  E-value=3.5e-10  Score=101.73  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..   .+|+++++++          .+|++++|+||||||||||++.|++.+.|.    +|++ .+.|.+
T Consensus         2 i~v~nlsk~y~~---~aL~~vs~~i----------~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~----sG~I-~~~G~~   63 (229)
T d3d31a2           2 IEIESLSRKWKN---FSLDNLSLKV----------ESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRI-LLDGKD   63 (229)
T ss_dssp             EEEEEEEEECSS---CEEEEEEEEE----------CTTCEEEEECCCTHHHHHHHHHHHTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEeCC---EEEeeeEEEE----------CCCCEEEEECCCCCcHHHHHHHHhcCcCCC----CCEE-EEccEe
Confidence            567888888864   2799999998          999999999999999999999999998865    7899 589999


Q ss_pred             ccCCCC
Q 019312          102 ITTNKI  107 (343)
Q Consensus       102 I~T~kp  107 (343)
                      |...++
T Consensus        64 i~~~~~   69 (229)
T d3d31a2          64 VTDLSP   69 (229)
T ss_dssp             CTTSCH
T ss_pred             ccccch
Confidence            965443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.87  E-value=3.7e-10  Score=99.41  Aligned_cols=65  Identities=22%  Similarity=0.300  Sum_probs=57.3

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|.  .+ +|+++++++          ++|++++|+||||||||||++.|++.+.|.    .|++ .|.|.+
T Consensus         3 lev~~ls~~y~--~~-vl~~is~~i----------~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~----~G~I-~~~g~~   64 (200)
T d1sgwa_           3 LEIRDLSVGYD--KP-VLERITMTI----------EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEI-IYNGVP   64 (200)
T ss_dssp             EEEEEEEEESS--SE-EEEEEEEEE----------ETTCCEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEeC--Ce-EEeceEEEE----------cCCCEEEEECCCCChHHHHHHHHhcccccC----CCEE-EECCEe
Confidence            67889999994  33 899999998          999999999999999999999999999876    6888 588988


Q ss_pred             ccC
Q 019312          102 ITT  104 (343)
Q Consensus       102 I~T  104 (343)
                      +..
T Consensus        65 i~~   67 (200)
T d1sgwa_          65 ITK   67 (200)
T ss_dssp             GGG
T ss_pred             hhH
Confidence            853

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.85  E-value=2.2e-10  Score=103.75  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=60.4

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      --+++.+++..|.  ...+++++++++          ++|++++|+||||||||||++.|++.++|.    .|++ .+.|
T Consensus         5 ~~Lev~~l~k~yg--~~~al~~vs~~i----------~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~----~G~I-~~~G   67 (240)
T d1ji0a_           5 IVLEVQSLHVYYG--AIHAIKGIDLKV----------PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKI-IFNG   67 (240)
T ss_dssp             EEEEEEEEEEEET--TEEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             eEEEEeeEEEEEC--CEEEEeeeeEEE----------CCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ccEE-Eecc
Confidence            3467788888885  344899999998          999999999999999999999999999865    7888 5899


Q ss_pred             ccccCCCC
Q 019312          100 LDITTNKI  107 (343)
Q Consensus       100 l~I~T~kp  107 (343)
                      .++....+
T Consensus        68 ~~i~~~~~   75 (240)
T d1ji0a_          68 QDITNKPA   75 (240)
T ss_dssp             EECTTCCH
T ss_pred             cccccccH
Confidence            99976544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=7.3e-10  Score=100.23  Aligned_cols=70  Identities=16%  Similarity=0.124  Sum_probs=60.4

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+|+++++++          .+|++++|+||||||||||++.|++.+.|.    +|++ .+.|.
T Consensus         6 ~I~v~nlsk~yg~--~~al~~vsl~v----------~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~----sG~I-~i~g~   68 (239)
T d1v43a3           6 EVKLENLTKRFGN--FTAVNKLNLTI----------KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRI-YFGDR   68 (239)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             eEEEEEEEEEECC--EEEEcceeEEE----------CCCCEEEEECCCCChHHHHHHHHHcCCCCC----CCEE-EEcce
Confidence            3788899999863  34899999998          999999999999999999999999999864    7888 58899


Q ss_pred             cccCCCC
Q 019312          101 DITTNKI  107 (343)
Q Consensus       101 ~I~T~kp  107 (343)
                      ++....+
T Consensus        69 ~i~~~~~   75 (239)
T d1v43a3          69 DVTYLPP   75 (239)
T ss_dssp             ECTTSCG
T ss_pred             ecccCCc
Confidence            9976554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=5.9e-10  Score=100.92  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             eeecccCCcCCcccc--cccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           22 YSSFYSPFLHPKRRR--SRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +++.++++.|..+..  .+++++++++          .+|++++|+||||||||||++.|++...|.    +|++ .+.|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i----------~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~----sG~I-~~~g   66 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHV----------PAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSV-LVDG   66 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEE----------CSSCEEEEEESTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEE----------cCCCEEEEECCCCCCHHHHHHHHcCCcccc----CCce-EEcC
Confidence            467788877776543  4799999998          999999999999999999999999998864    7898 5899


Q ss_pred             ccccCCC
Q 019312          100 LDITTNK  106 (343)
Q Consensus       100 l~I~T~k  106 (343)
                      .+|....
T Consensus        67 ~~i~~~~   73 (240)
T d3dhwc1          67 QELTTLS   73 (240)
T ss_dssp             EEECTTC
T ss_pred             eEeeeCC
Confidence            9986543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.83  E-value=8.3e-10  Score=90.38  Aligned_cols=125  Identities=14%  Similarity=0.113  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQ  138 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~  138 (343)
                      .++|+|+||+||||||+|+.|.+......+++.|.+  .+.+...            .+  .+.... . ..........
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~--~~~~~~~------------~~--~~~~~~-~-~~~~~~~~~~   63 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY--RQSIMAH------------EE--RDEYKY-T-KKKEGIVTGM   63 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH--HHHHTTS------------CC--GGGCCC-C-HHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHH--HHHHhcc------------cc--hhhhhh-h-hhhhHHHHHH
Confidence            368899999999999999999776653566666655  1111000            00  000001 1 1111222333


Q ss_pred             hhHHHHHHHhcC--CeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          139 ADNAISDIISRK--KTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       139 a~~~i~~i~~~g--~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      ....+..+.+.+  ..++++.+++++-...-.         +      ..+.....++++++++++|.+++.+|+.+|-.
T Consensus        64 ~~~~~~~~~~~~~~~~~vi~d~~~~~~~~~~~---------~------~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (152)
T d1ly1a_          64 QFDTAKSILYGGDSVKGVIISDTNLNPERRLA---------W------ETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (152)
T ss_dssp             HHHHHHHHHTSCSSCCEEEECSCCCSHHHHHH---------H------HHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHhhccCCCcccccccCCHHHHHH---------H------HHhhhhhccchhhhhcCCCHHHHHHHHHccCC
Confidence            344454554433  235777777654322210         0      00011224678889999999999999988854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=3.1e-10  Score=95.56  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=78.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhhH
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQADN  141 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~~  141 (343)
                      |+|+|++||||||+++.||+.++ .++|+.|..  +            ++..|.     +..+... ......|++...+
T Consensus         4 IvliG~~G~GKSTig~~La~~l~-~~fiD~D~~--i------------e~~~g~-----~i~~~~~-~~g~~~~r~~e~~   62 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVA--I------------EQRTGR-----SIADIFA-TDGEQEFRRIEED   62 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHH--H------------HHHHSS-----CHHHHHH-HHCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-CCeEeeccc--h------------hhhhhh-----hhhhhhh-hhhHHHHHHHHhh
Confidence            55679999999999999999999 777776654  1            111111     0011111 3344667776667


Q ss_pred             HHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHHH-HHh
Q 019312          142 AISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVDD-MLE  220 (343)
Q Consensus       142 ~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~~-Ml~  220 (343)
                      .+..+....+..+.+||+..|-.....         +             ..+..++||.++.+.+.+|+.+|-.+ |+.
T Consensus        63 ~~~~~~~~~~~vi~~gg~~~~~~~~~~---------~-------------l~~~~~I~L~~~~~~~~~R~~~~~~Rpll~  120 (165)
T d2iyva1          63 VVRAALADHDGVLSLGGGAVTSPGVRA---------A-------------LAGHTVVYLEISAAEGVRRTGGNTVRPLLA  120 (165)
T ss_dssp             HHHHHHHHCCSEEECCTTGGGSHHHHH---------H-------------HTTSCEEEEECCHHHHHHHTTCCCCCSSTT
T ss_pred             hhhhccccccccccccccccccccccc---------c-------------ccccceeeeeccchhhhhcccccccchhcc
Confidence            777777778877888887665222211         0             01234689999999999998544221 222


Q ss_pred             -ccHHHHHHHHHh
Q 019312          221 -SGMFEELAEFFD  232 (343)
Q Consensus       221 -~GlleEv~~l~~  232 (343)
                       .-..++++.++.
T Consensus       121 ~~~~~e~~~~l~~  133 (165)
T d2iyva1         121 GPDRAEKYRALMA  133 (165)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHH
Confidence             334555666653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.78  E-value=1.1e-09  Score=99.98  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.++++.|..  ..+|+++++++          .+|++++|+||||||||||++.|++..+|.    +|++ .+.|.+
T Consensus         3 Lev~nl~k~yg~--~~al~~vs~~i----------~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~----~G~I-~~~G~~   65 (258)
T d1b0ua_           3 LHVIDLHKRYGG--HEVLKGVSLQA----------RAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAI-IVNGQN   65 (258)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEECC--EEEEcceeeEE----------cCCCEEEEECCCCCcHHHHHHHHHcCccCC----CCCE-EECCEE
Confidence            567788888843  34899999998          999999999999999999999999998854    7888 589999


Q ss_pred             ccCCCC
Q 019312          102 ITTNKI  107 (343)
Q Consensus       102 I~T~kp  107 (343)
                      |...++
T Consensus        66 i~~~~~   71 (258)
T d1b0ua_          66 INLVRD   71 (258)
T ss_dssp             CCEEEC
T ss_pred             eccCCc
Confidence            876544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.78  E-value=4.8e-10  Score=94.40  Aligned_cols=108  Identities=20%  Similarity=0.240  Sum_probs=67.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQAD  140 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a~  140 (343)
                      -|+|+|++||||||+++.||+.++ .++++.|.+ +             ++..+.+     ...... ......|++...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~-~~~~d~d~~-i-------------e~~~g~~-----i~~~~~-~~g~~~~r~~e~   60 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFL-I-------------EQKFNQK-----VSEIFE-QKRENFFREQEQ   60 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH-H-------------HHHHTSC-----HHHHHH-HHCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC-CCEEecCch-h-------------hhHHhhh-----hhhHHH-hhhhccchhhhh
Confidence            378889999999999999999998 887777654 1             1111111     000111 223345666556


Q ss_pred             HHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHH
Q 019312          141 NAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKR  214 (343)
Q Consensus       141 ~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  214 (343)
                      ..+..+...+...+.+||+..+.+                     .+    .....++||+++.++|.+||..|
T Consensus        61 ~v~~~l~~~~~~v~~~~g~~~~~~---------------------~l----~~~~~vI~L~~s~~~l~~Rl~~~  109 (161)
T d1viaa_          61 KMADFFSSCEKACIATGGGFVNVS---------------------NL----EKAGFCIYLKADFEYLKKRLDKD  109 (161)
T ss_dssp             HHHHHHTTCCSEEEECCTTGGGST---------------------TG----GGGCEEEEEECCHHHHTTCCCGG
T ss_pred             hhchhhhhccccccccccchhhHH---------------------HH----HhCCeEEEeccchHHHHHHHccc
Confidence            677777766665555555432100                     00    11235799999999999998665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.76  E-value=1.4e-09  Score=98.47  Aligned_cols=68  Identities=13%  Similarity=0.109  Sum_probs=58.5

Q ss_pred             ceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           21 HYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .+++.++++.|..  ..+++++++++          ++|++++|+||||||||||++.|++...|.    +|++ .+.|.
T Consensus         3 ~i~v~nl~k~yg~--~~al~~vsl~i----------~~Ge~~~liG~sGaGKSTll~~i~gl~~p~----sG~I-~~~g~   65 (240)
T d1g2912           3 GVRLVDVWKVFGE--VTAVREMSLEV----------KDGEFMILLGPSGCGKTTTLRMIAGLEEPS----RGQI-YIGDK   65 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEE----------ETTCEEEEECSTTSSHHHHHHHHHTSSCCS----EEEE-EETTE
T ss_pred             cEEEEeEEEEECC--EEEEcceeeEE----------cCCCEEEEECCCCChHHHHHHHHhcCCCCC----CCEE-EECCE
Confidence            4778899998863  34899999998          899999999999999999999999999864    7888 58898


Q ss_pred             cccCC
Q 019312          101 DITTN  105 (343)
Q Consensus       101 ~I~T~  105 (343)
                      ++...
T Consensus        66 ~i~~~   70 (240)
T d1g2912          66 LVADP   70 (240)
T ss_dssp             EEEEG
T ss_pred             Eeccc
Confidence            88643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.76  E-value=8.1e-10  Score=100.66  Aligned_cols=70  Identities=16%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      ++..+++..|..  ..+|+++++++          .+|++++|+||||||||||++.|++.++|.    .|++ .+.|.+
T Consensus         5 L~v~nlsk~yg~--~~aL~~vs~~v----------~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~----~G~I-~~~g~~   67 (254)
T d1g6ha_           5 LRTENIVKYFGE--FKALDGVSISV----------NKGDVTLIIGPNGSGKSTLINVITGFLKAD----EGRV-YFENKD   67 (254)
T ss_dssp             EEEEEEEEEETT--EEEEEEECCEE----------ETTCEEEEECSTTSSHHHHHHHHTTSSCCS----EEEE-EETTEE
T ss_pred             EEEEEEEEEECC--eEEEcceEEEE----------CCCCEEEEECCCCCcHHHHHHHHHCCCcCC----CcEE-EECCEe
Confidence            566778777753  34899999998          999999999999999999999999999865    7888 589999


Q ss_pred             ccCCCCC
Q 019312          102 ITTNKIP  108 (343)
Q Consensus       102 I~T~kp~  108 (343)
                      +....|.
T Consensus        68 i~~~~~~   74 (254)
T d1g6ha_          68 ITNKEPA   74 (254)
T ss_dssp             CTTCCHH
T ss_pred             ccchhHH
Confidence            9765553

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=2.2e-09  Score=96.85  Aligned_cols=68  Identities=13%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             cceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           20 QHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ++++..+++..|.  ...+|+++++++          .+|++++|+||||||||||++.|++.+.|.    .|++ .+.|
T Consensus         1 gaI~v~nl~k~yg--~~~vl~~vs~~v----------~~Gei~glvG~nGaGKSTLl~~l~G~~~p~----~G~i-~i~G   63 (238)
T d1vpla_           1 GAVVVKDLRKRIG--KKEILKGISFEI----------EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIV-TVFG   63 (238)
T ss_dssp             CCEEEEEEEEEET--TEEEEEEEEEEE----------CTTCEEEEECCTTSSHHHHHHHHTTSSCCS----EEEE-EETT
T ss_pred             CCEEEEeEEEEEC--CEEEEccceeEE----------cCCCEEEEECCCCCCHHHHHHHHhcCCCCC----CCEE-EECc
Confidence            3577888888885  345899999998          999999999999999999999999999864    7888 5889


Q ss_pred             ccccC
Q 019312          100 LDITT  104 (343)
Q Consensus       100 l~I~T  104 (343)
                      .++..
T Consensus        64 ~~i~~   68 (238)
T d1vpla_          64 KNVVE   68 (238)
T ss_dssp             EETTT
T ss_pred             Eeccc
Confidence            98864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.72  E-value=2e-09  Score=90.82  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=68.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhhhhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      +.|+|+|++||||||+++.||+.++ .++|+.|.+. -             +..+.+     ..+..+ ......|.+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg-~~~id~D~~i-e-------------~~~g~~-----i~ei~~-~~g~~~~~~~~   61 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG-YEFVDTDIFM-Q-------------HTSGMT-----VADVVA-AEGWPGFRRRE   61 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT-CEEEEHHHHH-H-------------HHHCSC-----HHHHHH-HHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC-CCEEehhhhh-h-------------hhhhhh-----hhhhhc-ccchHHHHHHH
Confidence            4567899999999999999999999 8888877651 1             111110     000001 12335566666


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      .+.+.+....+. .+.+||+..+.....        +.+             +-...++||+++.+.+.+|+..|.+
T Consensus        62 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~--------~~l-------------~~~~~~v~L~~~~e~l~~Rl~~~~~  116 (170)
T d1e6ca_          62 SEALQAVATPNR-VVATGGGMVLLEQNR--------QFM-------------RAHGTVVYLFAPAEELALRLQASLQ  116 (170)
T ss_dssp             HHHHHHHCCSSE-EEECCTTGGGSHHHH--------HHH-------------HHHSEEEEEECCHHHHHHHHHHHHC
T ss_pred             HHHHHhhccccc-eecccccchhhhHHH--------Hhh-------------hccceeEEEecCchhHHHHHhhccc
Confidence            677777655444 345554433211100        001             1123578999999999999987754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.70  E-value=1.9e-08  Score=83.42  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      .|++|+|+||+||||||+++.|++.++ ..++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg-~~~~   33 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG-VPKV   33 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS-SCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC-CCEE
Confidence            478999999999999999999999987 5443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.69  E-value=3e-08  Score=82.19  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDK   93 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds   93 (343)
                      +++..|+|+||+||||||++..|++.++...+++.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~   39 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK   39 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHH
Confidence            4677899999999999999999999987334444433

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=4.1e-08  Score=83.56  Aligned_cols=105  Identities=13%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      +++.+|+++|++||||||+++.++...+ ..+||.|.+.        +                              + 
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~-~~~i~~D~~~--------~------------------------------~-   51 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAG-YVHVNRDTLG--------S------------------------------W-   51 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGT-CEEEEHHHHC--------S------------------------------H-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcC-CEEEchHHHH--------H------------------------------H-
Confidence            5678999999999999999999998887 7777777552        0                              0 


Q ss_pred             hhhhHHHHHHHhcCCeeEEEcCchhhHHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHHHHHH
Q 019312          137 LQADNAISDIISRKKTPLLVGGSNSFIYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLNKRVD  216 (343)
Q Consensus       137 ~~a~~~i~~i~~~g~~pIlvGGT~lY~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~Rv~  216 (343)
                      ....+.+.....+|. .||+.+|+.....-..         +      ..+.....+.+.+++++++.+++.+|...|..
T Consensus        52 ~~~~~~~~~~l~~g~-~vIiD~t~~~~~~R~~---------~------~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          52 QRCVSSCQAALRQGK-RVVIDNTNPDVPSRAR---------Y------IQCAKDAGVPCRCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             HHHHHHHHHHHHTTC-CEEEESCCCSHHHHHH---------H------HHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CceeeCcCCCHHHHHH---------H------HHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcc
Confidence            111233344455666 4666666543211110         0      01111234678889999999999999999954


Q ss_pred             H
Q 019312          217 D  217 (343)
Q Consensus       217 ~  217 (343)
                      .
T Consensus       116 ~  116 (172)
T d1yj5a2         116 T  116 (172)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.60  E-value=2.2e-08  Score=82.12  Aligned_cols=25  Identities=40%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|+|+||+||||||+|+.|++.++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999999987

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.57  E-value=1.8e-07  Score=76.93  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=24.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++|+|.||+||||||+++.|++.++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999998

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.4e-08  Score=89.47  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             eeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEeccc
Q 019312           22 YSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLD  101 (343)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~  101 (343)
                      +++.+|+..+      +++++++.+          ++|++++|+||||||||||++.|++..+ .    .|++ .+.|.+
T Consensus         4 l~~~dv~~~~------~l~~isl~I----------~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~----~G~I-~~~g~~   61 (231)
T d1l7vc_           4 MQLQDVAEST------RLGPLSGEV----------RAGEILHLVGPNGAGKSTLLARMAGMTS-G----KGSI-QFAGQP   61 (231)
T ss_dssp             EEEEEECCTT------TSCSEEEEE----------ETTCEEECBCCTTSSHHHHHHHHHTSCC-C----SSEE-EESSSB
T ss_pred             EEEECcccCc------eecCEEEEE----------cCCCEEEEECCCCCcHHHHHHHHhCCCC-C----ceEE-EECCEE
Confidence            4567777654      488999998          9999999999999999999999999754 4    6888 488988


Q ss_pred             ccCCCC
Q 019312          102 ITTNKI  107 (343)
Q Consensus       102 I~T~kp  107 (343)
                      +...++
T Consensus        62 i~~~~~   67 (231)
T d1l7vc_          62 LEAWSA   67 (231)
T ss_dssp             GGGSCH
T ss_pred             CCcCCH
Confidence            865443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.53  E-value=7.2e-08  Score=79.39  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=29.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..|+|+||+||||||+++.|++.++ .++|+.|.+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~-~~~i~~~~~   38 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG-LKYINVGDL   38 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC-CcEEechHH
Confidence            4577999999999999999999998 888877665

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=1.5e-08  Score=93.45  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=45.5

Q ss_pred             CCccceeecccCCcCCcccccccccceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           17 QQQQHYSSFYSPFLHPKRRRSRWRKTVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ..+..+.+.+++|.+   .| +|+++++++          .+|++++|+||||||||||++.|++.+.|.    .|++
T Consensus        34 ~~~~~i~~~~~~~~g---~p-vL~~isl~i----------~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~----~G~I   93 (281)
T d1r0wa_          34 SDENNVSFSHLCLVG---NP-VLKNINLNI----------EKGEMLAITGSTGSGKTSLLMLILGELEAS----EGII   93 (281)
T ss_dssp             ------CHHHHHHTT---CE-EEEEEEEEE----------CTTCEEEEEESTTSSHHHHHHHHHTSSCCS----EEEE
T ss_pred             CCCCcEEEEEcCCCC---Ce-EEeCeEEEE----------cCCCEEEEECCCCChHHHHHHHHhCCCcCC----CcEE
Confidence            334566666666643   23 999999998          999999999999999999999999999864    4555

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.3e-07  Score=80.75  Aligned_cols=37  Identities=14%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      ++.++|+|+||+||||||+|..|++.++ ...||.|.+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g-~~~is~gdl   42 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAGDL   42 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEehhHH
Confidence            4567999999999999999999999998 888998877

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.44  E-value=1.2e-07  Score=80.72  Aligned_cols=37  Identities=19%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++.+|+|+||.||||||++..||+.++ ...||.|.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g-~~~i~~g~~   40 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDL   40 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC-CceEchhhH
Confidence            4678999999999999999999999998 888888776

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=2.3e-07  Score=83.50  Aligned_cols=45  Identities=29%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIP  108 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~  108 (343)
                      +.+++|+||||||||||++.|++.+.|.    .|++ .+.|.++...++.
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~----~G~I-~~~G~~i~~~~~~   68 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIVKPD----RGEV-RLNGADITPLPPE   68 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSSCCS----EEEE-EETTEECTTSCTT
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCCCCC----ceEE-EECCEECCcCCHH
Confidence            4699999999999999999999999865    7999 5999999765543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=7.4e-07  Score=75.60  Aligned_cols=38  Identities=13%  Similarity=0.371  Sum_probs=33.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      +.+|+|+||.||||||+|+.||+.++ ...||.|.+  ++.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g-~~~i~~g~l--lR~   38 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGEL--LRD   38 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH--HHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC-CceEcHHHH--HHH
Confidence            36899999999999999999999998 889998887  554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.30  E-value=3.2e-07  Score=77.96  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +..|+|+||.||||||++..|++.++ ...||.|.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~-~~~is~~~~   37 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDL   37 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC-CcEEehhHH
Confidence            45688999999999999999999999 888887765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=3e-07  Score=74.14  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.|+|+||+||||||+++.||+.++ ..+++.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~-~~~id~~~~   36 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQE   36 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC-CCeEeechh
Confidence            4688899999999999999999998 776665544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.14  E-value=1.8e-06  Score=73.98  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +.-.|+|+||.||||||++..||+.++ ...||.|.+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g-~~~is~gdl   40 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE-LKHLSSGDL   40 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC-CEEEEHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC-CeEEcHHHH
Confidence            455778889999999999999999999 888988877

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.10  E-value=8.2e-07  Score=72.96  Aligned_cols=35  Identities=31%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+.|+|+||+|||||||++.||+.++ ..+++.+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~-~~~i~~~~~   41 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGR   41 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC-CCeEeeehH
Confidence            47899999999999999999999998 777766654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.7e-06  Score=72.57  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||++..|++.++ ...|+.|.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~-~~~i~~~~l   34 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG-IPQISTGDM   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CceechhhH
Confidence            477899999999999999999998 888888776

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.04  E-value=1.2e-06  Score=74.70  Aligned_cols=37  Identities=19%  Similarity=0.464  Sum_probs=34.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .++++|+|+||.||||||++..|++.++ ..+|+.|.+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g-~~~is~g~l   42 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDL   42 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC-CEEEEHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC-CeeEeccHH
Confidence            5678999999999999999999999998 888988887

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.8e-06  Score=72.82  Aligned_cols=33  Identities=27%  Similarity=0.542  Sum_probs=29.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||+++.||+.++ ...|+.|.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g-~~~i~~~d~   36 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDM   36 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CceEecccc
Confidence            467889999999999999999998 888888776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.96  E-value=1e-06  Score=76.07  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=35.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGL  100 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl  100 (343)
                      .-+|+|.||.||||||+|+.||+.++ .+.||+|.+  ||.+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg-~~~istGdl--~R~~   41 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG-FTYLDTGAM--YRAA   41 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC-CEEEEHHHH--HHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC-CcEECHHHH--HHHH
Confidence            35788999999999999999999999 999999998  7753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=1.8e-06  Score=72.60  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||+++.|++.++ ...|+.|.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g-~~~i~~~~l   34 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGEL   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-CceEchHHH
Confidence            478999999999999999999998 888887776

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.1e-06  Score=75.14  Aligned_cols=37  Identities=24%  Similarity=0.470  Sum_probs=34.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEec
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKG   99 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~g   99 (343)
                      ++|+|.||.||||||+++.|++.++ ...||+|.+  ||.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g-l~~iStGdL--lR~   40 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ-WHLLDSGAI--YRV   40 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH--HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC-CcEECHHHH--HHH
Confidence            4999999999999999999999999 999999999  764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.87  E-value=2.4e-06  Score=72.31  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|-.|+|+||.||||||+++.||+.++ ...|+.|.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g-~~~i~~gdl   37 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDM   37 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence            456777899999999999999999998 888888777

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.7e-06  Score=72.44  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      +|.+|.|+|++||||||+|+.|++.++ ..++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~-~~~~   48 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGI   48 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH-HTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCC
Confidence            678999999999999999999999987 4433

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.82  E-value=4.9e-06  Score=68.02  Aligned_cols=28  Identities=14%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+|.+|.|+|++||||||+|+.|++.++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5688999999999999999999999986

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.81  E-value=3e-06  Score=70.14  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|+|.|++||||||++..|++.++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999986

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=4.2e-06  Score=69.16  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=22.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhhcCC
Q 019312           62 VVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      |+|+||||||||||++.+++.+++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999999873

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.8e-05  Score=68.37  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=28.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +|+|+|..||||||++..|. .++ ..+|++|.+
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G-~~vidaD~i   36 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLG-INVIDADII   36 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTT-CEEEEHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCC-CcEEEchHH
Confidence            89999999999999999886 557 889999988

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.76  E-value=2.8e-05  Score=67.59  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCccccccccCCCcccChhhhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFVPDDVEFTPDDFR  136 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~~~~~~~s~~~f~  136 (343)
                      .+|.+|.|+|.+||||||||+.|++.+.....  ...+ ++.|-.+             .+.+    ..+- .|+.....
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~--~~~~-~ldgD~i-------------R~~l----~~~l-~ys~~~r~   80 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR--VHAY-RLDGDNI-------------RFGL----NKDL-GFSEADRN   80 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEE-EECHHHH-------------TTTT----TTTC-CSSHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcC--ceEE-EEcchHH-------------HHhh----cCCC-CCChhHHH
Confidence            67889999999999999999999976630000  0111 1222111             1111    1111 34444443


Q ss_pred             hhh---hHHHHHHHhcCCeeEEEcCchhh-HHHHHhhhcCcccccccccCCCcccccccCCceEEEEEeCCHHHHHHHHH
Q 019312          137 LQA---DNAISDIISRKKTPLLVGGSNSF-IYSLLVQEYDRGLSVFDDRFDSDSVSSSLRYNCCFLWVDSSLQLLYDYLN  212 (343)
Q Consensus       137 ~~a---~~~i~~i~~~g~~pIlvGGT~lY-~~aLl~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~  212 (343)
                      +.+   ......+...|...|+..-+.+. .+......++...           .......++..++|+++.+++.+|-.
T Consensus        81 ~~~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~-----------~~~~~~~~~~eVyv~~~le~~~~Rd~  149 (208)
T d1m7ga_          81 ENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVAT-----------PGEETGLPFVEVYVDVPVEVAEQRDP  149 (208)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCC-----------TTCSCCCCEEEEEEECCHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhc-----------cchhcCCceEEEEEcCCHHHHHHhhc
Confidence            333   23344556677766655544331 1111111010000           00011235678899999999999976


Q ss_pred             HHHHHHHhcc
Q 019312          213 KRVDDMLESG  222 (343)
Q Consensus       213 ~Rv~~Ml~~G  222 (343)
                      +|...-..+|
T Consensus       150 k~~y~~~~~~  159 (208)
T d1m7ga_         150 KGLYKKAREG  159 (208)
T ss_dssp             TCHHHHHHHT
T ss_pred             ccchhhhhcC
Confidence            6655544444

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=5.7e-06  Score=68.85  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||+++.||+.++ ...|+.|.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~-~~~i~~~~l   34 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG-IPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-CceechhHH
Confidence            378999999999999999999998 888888776

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=1.3e-05  Score=69.11  Aligned_cols=33  Identities=18%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .+|+|+|+.||||||++..|. .++ ..+||+|.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G-~~vidaD~i   35 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLG-VPLVDADVV   35 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTT-CCEEEHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC-CeEEEchHH
Confidence            478999999999999999886 467 899999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.64  E-value=7.4e-06  Score=68.76  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      .|+|+||.||||||++..||+.++ ...|+.|.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g-~~~is~gdl   34 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG-TPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-CceeeHHHH
Confidence            478999999999999999999998 888888776

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=4.7e-05  Score=65.63  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCcccccccCcccccccc-CCCcccChhhhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRHNVPHHLLGEFV-PDDVEFTPDDFR  136 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~~i~h~li~~~~-~~~~~~s~~~f~  136 (343)
                      ..+.|+|+||   ||+|+...|.+.++       +.+  ......+|..|...|..|+.||++...+ +.. ....+.|.
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p-------~~f--~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~-~i~~~~fi   74 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFP-------DKF--GSCVPHTTRPKREYEIDGRDYHFVSSREKMEK-DIQAHKFI   74 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCT-------TTE--ECCCCEECSCCCTTCCBTTTBEECSCHHHHHH-HHHTTCEE
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCc-------cce--eecccccccCCCCCCCCCcccchhhhHHHHHH-HHhhccce
Confidence            3578888998   59999999999886       222  3456778999999999999999985332 222 22222222


Q ss_pred             ----------hhhhHHHHHHHhcCCeeEEEc
Q 019312          137 ----------LQADNAISDIISRKKTPLLVG  157 (343)
Q Consensus       137 ----------~~a~~~i~~i~~~g~~pIlvG  157 (343)
                                -.....|.++.+.|+.+|+..
T Consensus        75 E~~~~~g~~YGt~~~~i~~~~~~gk~~lldi  105 (199)
T d1kjwa2          75 EAGQYNSHLYGTSVQSVREVAEQGKHCILDV  105 (199)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             eeeeecCCccceeeeEEEehhcCCCcccccc
Confidence                      223567888888999887754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=69.09  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      |-+|+|.|++||||||+++.|+..++
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999999886

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=7.2e-06  Score=68.40  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+-+|+|.||+||||||||+.|+..++
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345788999999999999999999876

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.59  E-value=1.2e-05  Score=70.45  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC-CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF-PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~-~~eIIs~Ds~   94 (343)
                      ..++.|++.||+|||||+||+.||+.++ +..+||+|.+
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~   68 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   68 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHH
Confidence            4567899999999999999999999986 1344555443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.7e-05  Score=64.50  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++|+|++|||||||+..|++.+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.51  E-value=2.3e-05  Score=64.17  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++|+|.||+||||||++..|++.++
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            37999999999999999999999886

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4.8e-05  Score=65.92  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++|.+|+|-|+-||||||+++.|++.+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.3e-05  Score=62.14  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.|+|+||+|||||||++.+++.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5689999999999999999999874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=4e-05  Score=74.18  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      .++-|.++||||||||-||+.||+.++ .+++.+|
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~-VPFv~~d   81 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLAN-APFIKVE   81 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhC-CCEEEee
Confidence            356899999999999999999999998 6665544

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=3.9e-05  Score=64.54  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=29.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKM   94 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~   94 (343)
                      +-+|+|+|+.||||||+|..|.+ ++ ..++|+|.+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~-~g-~~~~~~D~~   36 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS-WG-YPVLDLDAL   36 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH-TT-CCEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CC-CeEEEccHH
Confidence            46889999999999999999854 66 788888887

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=5.7e-05  Score=63.52  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+|+++|.+||||||+|+.|++.++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.22  E-value=8.3e-05  Score=61.15  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++|+|++|||||||+..|.+.+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999988775

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.20  E-value=3.2e-05  Score=70.85  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~Ds~   94 (343)
                      .+..+|+|.|+|||||||+++.|...+.    ...+|+.|+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            4567999999999999999999988764    1358999998

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=8.5e-05  Score=68.10  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=24.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.-+.++||||||||.||++||+.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            456677899999999999999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=0.00012  Score=61.33  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=25.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++-+|+|-|+.||||||+++.|++.++
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5567999999999999999999999986

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00012  Score=67.56  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC------CCceecCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF------PSEIINSDKM   94 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~------~~eIIs~Ds~   94 (343)
                      +.+-+|+|.|++||||||+++.|...+.      ...+|+.|.+
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4567999999999999999999998763      2457888888

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.01  E-value=0.00017  Score=62.79  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=24.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++++|||||||||.+..||..+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999988764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00029  Score=61.17  Aligned_cols=30  Identities=17%  Similarity=0.197  Sum_probs=26.0

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSE   87 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~e   87 (343)
                      ...+.++|.||+|+||||+++++|+.++ .+
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~-~~   79 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELG-YD   79 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTT-CE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH-hh
Confidence            3456899999999999999999999987 44

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00023  Score=62.22  Aligned_cols=28  Identities=29%  Similarity=0.479  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|+++||||+||||.+..||..+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999987653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.90  E-value=0.00016  Score=62.86  Aligned_cols=34  Identities=15%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcCCCceec-CCce
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFFPSEIIN-SDKM   94 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~~~eIIs-~Ds~   94 (343)
                      ++|+|+|+.||||||+|..|+..++ ..+++ +|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g-~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS-AVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC-EEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC-CeEEcccHHH
Confidence            6899999999999999999999888 78887 5555

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00033  Score=61.12  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++++||||+||||.+..||..+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4467999999999999999999997664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00027  Score=64.42  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc------C-CCceecCCceEEEe
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF------F-PSEIINSDKMQVYK   98 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~------~-~~eIIs~Ds~qvy~   98 (343)
                      ..+-+|+|.|++|||||||+..|...+      . ...+||-|.+  |.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf--Y~   71 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF--YL   71 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG--BC
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC--CC
Confidence            345688999999999999998876553      1 1456788988  64

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.00031  Score=60.68  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+.+.||+|+|||++|+.||+.++
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccC
Confidence            34578999999999999999999998

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.81  E-value=0.00027  Score=66.44  Aligned_cols=31  Identities=26%  Similarity=0.429  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ++..+.++||||+|||.||+.||+.++ .++|
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~-~~~i   97 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLD-IPIA   97 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcc-ccee
Confidence            345678889999999999999999886 4443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.80  E-value=0.00032  Score=60.99  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+++++||||+||||.+..||..+.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.79  E-value=0.00034  Score=60.98  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=20.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.+.+++++||||+||||.+..||..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987663

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0003  Score=57.82  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+|.++.|.||+|||||+|+..++....
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999987643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00051  Score=59.34  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+-+.+.||+|+||||+|+.+|+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999999987

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00025  Score=60.88  Aligned_cols=27  Identities=26%  Similarity=0.161  Sum_probs=25.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++|+|-|+-||||||+++.|++.+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            468999999999999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00058  Score=60.97  Aligned_cols=31  Identities=32%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      ..++-+.+.||+|||||++++.+|+.++ .++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~-~~~   73 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK-VPF   73 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT-CCE
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcC-CCE
Confidence            3456788999999999999999999988 554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00057  Score=58.72  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+.|.||+|+||||+++.+|+.+.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            35688999999999999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.59  E-value=0.00057  Score=58.43  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|+|+||.|||||||...|.+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            789999999999999999987664

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.58  E-value=0.00058  Score=60.44  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ..-+.+.||+|||||++++.||..++ ..++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~-~~~~~   70 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN-FPFIK   70 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT-CSEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc-ccccc
Confidence            34578999999999999999999988 65543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00049  Score=63.13  Aligned_cols=29  Identities=24%  Similarity=0.414  Sum_probs=25.0

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      ...++++||||+|||.||+.||+.++ .++
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~-~~~   80 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG-IEL   80 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT-CEE
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc-CCe
Confidence            34788999999999999999999987 443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.55  E-value=0.00068  Score=58.37  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=24.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..++|.||+|+|||++++.+++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999999886

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.53  E-value=0.00081  Score=63.02  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ++++.+++.||.|+|||++++.||+.++ +.+|+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~-~~~i~  184 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG-GKALN  184 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC-CEEEC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC-CCEEE
Confidence            5678999999999999999999999999 77665

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.52  E-value=0.00076  Score=57.16  Aligned_cols=40  Identities=33%  Similarity=0.520  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -.+.-++|+|++|+||||++..|.+. + ..+|+.|.+-+.+
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g-~~lv~DD~~~i~~   51 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-G-HRLIADDRVDVYQ   51 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-T-CEEEEEEEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-C-CeEEecCeEEEEE
Confidence            45788999999999999999998875 5 7888888886544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.0009  Score=59.27  Aligned_cols=30  Identities=30%  Similarity=0.391  Sum_probs=25.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCCCcee
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFPSEII   89 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~~eII   89 (343)
                      ++-+.+.||.|||||++++.+|+.++ ..++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~-~~~~   71 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR-VPFI   71 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC-CCEE
Confidence            45689999999999999999999987 5543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.43  E-value=0.00073  Score=62.36  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcCC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFFP   85 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~~   85 (343)
                      +..++|+|||||||||++..|....++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccc
Confidence            345899999999999999999998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00081  Score=57.11  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|++|+|-|+-||||||++..|++.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.41  E-value=0.0003  Score=59.81  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      .+.-+.|.|++|+||||++..|... + ..+|+.|.+.+++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G-~~lvaDD~v~~~~   52 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-N-HLFVGDDAIEIYR   52 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-T-CEEEEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-C-CceecCCeEEEEE
Confidence            5778999999999999999998875 5 7889988886654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.00096  Score=59.50  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSD   92 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~D   92 (343)
                      .++-+.+.||+|||||+|++.+|..++ .+++..+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~-~~~~~~~   73 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIK   73 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC-CcEEEEE
Confidence            456688999999999999999999998 6654443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00086  Score=57.31  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..++|.||+|+||||+++.+++.+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            347899999999999999999975

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0011  Score=56.93  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|++|+|-|+-||||||++..|++.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            689999999999999999999999986

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0024  Score=57.43  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=23.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...-++|+||.|+|||+++..||+.+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            346788999999999999999998764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.18  E-value=0.0022  Score=53.86  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEe
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYK   98 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~   98 (343)
                      -.+.-+.|.|++|+||||++..|.+. + ..+|+.|.+.+.+
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g-~~li~DD~~~~~~   52 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-G-HRLVADDNVEIRE   52 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-T-CEEEESSEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-C-CeEEeCCeEEEEE
Confidence            45788999999999999999988877 5 7889888886554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.00097  Score=56.48  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .++++.++.|.||+|||||+|+..++..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=56.44  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=24.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++|+|=|+-||||||+++.|++.++
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            57999999999999999999999987

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.11  E-value=0.0011  Score=56.93  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++++.++.|.||+|||||+|+..++...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999988654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0022  Score=56.72  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=25.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      .++-+.+.||+|||||++++.+|..++ ..+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~-~~~   66 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETG-AFF   66 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT-CEE
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhC-CeE
Confidence            345688999999999999999999987 543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.03  E-value=0.0021  Score=53.45  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.|+|+|++|||||||+..|.+.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC
Confidence            46999999999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.00027  Score=57.55  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+|+|||||||||++.+|.-.+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4888999999999999999987664

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0017  Score=55.36  Aligned_cols=28  Identities=25%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .++++.++.|.||+|||||+|+..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.99  E-value=0.0018  Score=55.52  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++++|.||.|+|||+|++.+++..+
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            46899999999999999999998876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0017  Score=55.49  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+++.||+|+||||+|+.+++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            477999999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0035  Score=51.99  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=26.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+|++.|+=||||||+++.+++.++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            5678999999999999999999999997

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.80  E-value=0.0013  Score=56.82  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.|.||+|+|||++++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            455679999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0023  Score=54.52  Aligned_cols=24  Identities=29%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.|.||+|+||||+++.+++.+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            377999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0017  Score=55.82  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ..++|.||.|+||||+++.+++.+.
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3578999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0023  Score=56.12  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +++..+++|+||+|||||+..|....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            58899999999999999999997654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.0019  Score=57.32  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.+|+||||||||+++.+|+-.++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5889999999999999999876654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.005  Score=52.77  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=23.7

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...-++|+||+|+|||+++..||+.+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            345789999999999999999999774

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.73  E-value=0.016  Score=45.57  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhc
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      --|+|+|.+|||||||+..+...-
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999987653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.72  E-value=0.0022  Score=54.89  Aligned_cols=29  Identities=34%  Similarity=0.406  Sum_probs=26.0

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++++.++.|.|++|||||+|+..++...
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999998875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.72  E-value=0.0023  Score=53.76  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=23.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +++|.++.|.|++|+|||+|+..++.
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999999987764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.0025  Score=53.27  Aligned_cols=24  Identities=38%  Similarity=0.551  Sum_probs=22.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +|+|-|+-||||||++..|++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0063  Score=55.93  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+..+|+|+||+|||||||...|++.+.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999987664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.70  E-value=0.0021  Score=54.20  Aligned_cols=29  Identities=14%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++++.++.|.|++|+|||+|+..+|-..-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999987653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.68  E-value=0.0026  Score=50.17  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++|||||||+..+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.63  E-value=0.0029  Score=59.77  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.-+|+|+|||||||||++..+...++
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            345899999999999999999988876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0014  Score=53.26  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ..-|+|+|.+++|||||+.+|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999888654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.54  E-value=0.0042  Score=50.90  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +...--|+|+|.+|+|||||+.+|.+.
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            345567899999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.48  E-value=0.0039  Score=54.65  Aligned_cols=28  Identities=18%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..+|.+++|.|+||+|||+|+..++...
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            3678999999999999999999998653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0036  Score=49.08  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -|+|+|++++|||||+..|.+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0039  Score=57.11  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +.+.+|+||||||||+++-+|.=
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999988853

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.0036  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .|+|+|+++||||||+..|.+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.31  E-value=0.0035  Score=50.47  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ++..-|+|+|++|||||||+..|.+.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456889999999999999998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.28  E-value=0.0029  Score=55.69  Aligned_cols=27  Identities=33%  Similarity=0.479  Sum_probs=22.0

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +++..+++|+||+|||||+..|.....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            578899999999999999999976543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.006  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +..++++|.|||++||||+++.++-.
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHHHH
Confidence            34579999999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.24  E-value=0.0035  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++++|||||...|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.23  E-value=0.0033  Score=57.16  Aligned_cols=28  Identities=36%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCce
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEI   88 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eI   88 (343)
                      -+.|+||.|+|||+|++.+++.+++...
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~~~~   57 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPEIEA   57 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCCEEE
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCCchh
Confidence            5789999999999999999999975443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0051  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.|+|+|+++||||||+..|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.11  E-value=0.0056  Score=47.93  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ...++.+|.+|||||||+++..+....
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHc
Confidence            456788899999999999886655443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.09  E-value=0.0055  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      .|+|+|.+|+|||||+..|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999865

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.013  Score=46.76  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +|.+-+|+||..|||||-+...+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            47789999999999999888877654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.97  E-value=0.0053  Score=56.05  Aligned_cols=24  Identities=38%  Similarity=0.679  Sum_probs=21.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++.++||||+|||.+|+.||+.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            678889999999999999999873

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0062  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      +|+|+|.+++|||||+.+|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0061  Score=48.54  Aligned_cols=23  Identities=48%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|++++|||||+..|.+.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.91  E-value=0.0055  Score=49.25  Aligned_cols=22  Identities=14%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|+.|||||||+..|...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0073  Score=52.53  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=23.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .++.+++|.|++|+|||+|+..||..+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            348899999999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.75  E-value=0.0041  Score=51.11  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|++++|||||...|.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999988654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.0087  Score=50.01  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +-|+|+|+.+||||||...|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.66  E-value=0.012  Score=50.60  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcCCCceec
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFFPSEIIN   90 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~~~eIIs   90 (343)
                      ++...++|.||.++|||.++..|++.+. +.+||
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~-G~vis   83 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ-GAVIS   83 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT-CEECC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC-CEEEe
Confidence            6678999999999999999999999997 65544

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.64  E-value=0.007  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      |+|+|.+++|||||+..|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0087  Score=53.30  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=26.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+.++-|.||+|||||+|+..++....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            456789999999999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.54  E-value=0.0089  Score=48.45  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.3

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+|+|||||+..+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.52  E-value=0.025  Score=51.67  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=23.6

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+..+|+|+||.|+|||||.-.|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.47  E-value=0.0095  Score=47.95  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|+.|||||||+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4778999999999999988653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.44  E-value=0.016  Score=51.68  Aligned_cols=30  Identities=13%  Similarity=0.348  Sum_probs=26.1

Q ss_pred             CCCCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           54 AHSKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        54 ~~~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..++.+.++-|.||+|||||+|+..++...
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            356789999999999999999998887654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.38  E-value=0.011  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ++++|.|||++||||+++.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            58999999999999999987654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.33  E-value=0.0095  Score=47.96  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.--|+|+|..|||||||+..|...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            3346889999999999999988764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.27  E-value=0.013  Score=52.27  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             CCCCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           55 HSKKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        55 ~~~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .++.+.++-|.||+|||||+|+..++....
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            457789999999999999999999887654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.011  Score=47.74  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=18.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|+.|+|||||+..+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.012  Score=50.67  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.|.||+|+|||++|+.+++.+.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            45688999999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.25  E-value=0.011  Score=47.47  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|.+|+|||||+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988775

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.014  Score=49.49  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=23.5

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +..+.+.||.|+||||+++.+|+.+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            45689999999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.23  E-value=0.02  Score=53.75  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..-++|+|++|+|||+++..||+.+
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHH
Confidence            3456788999999999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.011  Score=48.51  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|++|+|||||+..+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            378999999999999998875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.98  E-value=0.013  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcC
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.|.||+|||||.|+.+++..+.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhc
Confidence            478999999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.014  Score=47.45  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=18.4

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      |+|+|+.|||||+|+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999987643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.014  Score=46.66  Aligned_cols=20  Identities=20%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|..|+|||+|+..+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.96  E-value=0.006  Score=48.57  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+++|||||+.+|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.014  Score=47.11  Aligned_cols=20  Identities=40%  Similarity=0.714  Sum_probs=17.9

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|.+|+|||||+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.015  Score=46.82  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.014  Score=48.37  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=22.3

Q ss_pred             CEEEEEcC-CcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGA-TGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~Gp-TGsGKStla~~la~~~~   84 (343)
                      +.+.|+|. ||+||||++..||..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            57899999 59999999999999884

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.015  Score=47.32  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -++|+|+.|+|||||+..+...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.82  E-value=0.013  Score=51.56  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      ...|+|+|.||+|||||+..|.+.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            457889999999999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.014  Score=46.87  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHh
Q 019312           60 KLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~   81 (343)
                      .-|+|+|..|+|||+|+..+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.015  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.015  Score=47.32  Aligned_cols=22  Identities=32%  Similarity=0.367  Sum_probs=18.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+|+|||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999888754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.74  E-value=0.02  Score=46.20  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      .+.--|+|+|+.|||||||+..+..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3345689999999999999988754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.016  Score=46.69  Aligned_cols=22  Identities=45%  Similarity=0.738  Sum_probs=19.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.017  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.016  Score=46.53  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=18.8

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      |+++|.+|+|||||+..+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.017  Score=46.68  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=18.7

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      |+|+|..|+|||+|+..+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999988654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.017  Score=46.66  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=19.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+|||||+|+..+...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999987653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.018  Score=46.47  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=19.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|+.|+|||+|+..+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.50  E-value=0.019  Score=46.17  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|.+|+|||||+..+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.50  E-value=0.02  Score=50.71  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=22.5

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ...+++|.|+-|+||||||+.+....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.019  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999998753

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.48  E-value=0.0098  Score=45.55  Aligned_cols=22  Identities=27%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             CCCCCEEEEEcCCcccHHHHHH
Q 019312           56 SKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~   77 (343)
                      .++++.++|.+|||||||..+.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHH
Confidence            4678999999999999996654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.021  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.019  Score=45.85  Aligned_cols=20  Identities=25%  Similarity=0.474  Sum_probs=18.3

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|..|+|||+|+..+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.021  Score=46.27  Aligned_cols=20  Identities=40%  Similarity=0.640  Sum_probs=18.3

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|.+|||||||+..+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.018  Score=52.59  Aligned_cols=31  Identities=32%  Similarity=0.539  Sum_probs=24.6

Q ss_pred             ceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312           42 TVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~   77 (343)
                      ++|+|+...+     .++.+-++.|.||+|||||+.
T Consensus         2 ~~mhcsan~~-----~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1           2 ASMHCSANVG-----EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECEEEEEC-----TTSCEEEEECSTTSSHHHHHC
T ss_pred             cceecccccC-----CCCCEEEEEccCCCCccccee
Confidence            4677765543     567899999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.31  E-value=0.012  Score=47.97  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHh
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      .+.--|+|+|++|||||||+..+..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3345688999999999999988743

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.02  Score=46.31  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=18.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.021  Score=46.70  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=19.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --|+|+|.+|+|||+|+..+...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999988754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.021  Score=46.41  Aligned_cols=21  Identities=38%  Similarity=0.707  Sum_probs=18.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998775

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.23  E-value=0.021  Score=52.30  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      -++.+.||+|+|||.|++.||..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            3556689999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.16  E-value=0.023  Score=46.43  Aligned_cols=20  Identities=35%  Similarity=0.679  Sum_probs=18.3

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|.+|||||||+..+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.024  Score=45.74  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=18.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|+.|+|||+|+..+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.014  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=17.4

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|++|+|||+|+..+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378899999999999887654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.024  Score=46.00  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=19.6

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhc
Q 019312           61 LVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -|+|+|..|+|||+|+..+....
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            37899999999999999887543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.86  E-value=0.024  Score=46.37  Aligned_cols=19  Identities=26%  Similarity=0.517  Sum_probs=17.6

Q ss_pred             EEEEEcCCcccHHHHHHHH
Q 019312           61 LVVIMGATGTGKSGLSIDL   79 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~l   79 (343)
                      -|+|+|.+|||||+|+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.028  Score=45.47  Aligned_cols=21  Identities=38%  Similarity=0.670  Sum_probs=18.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+++|.+|||||+|+..+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367899999999999998875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.025  Score=46.81  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|+.|||||||+..+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            3789999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.77  E-value=0.028  Score=45.18  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -++|+|..|+|||+|+..+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.70  E-value=0.027  Score=46.15  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+|+|||+|+..+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999887653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.029  Score=44.99  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.65  E-value=0.03  Score=45.23  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=18.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.02  Score=49.15  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      -++++|.|.=|||||||++.+.+...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            36899999999999999999988643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.031  Score=45.89  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999988765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.031  Score=46.00  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|+..+...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.36  E-value=0.031  Score=45.75  Aligned_cols=22  Identities=32%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|.+.+|||||..+|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            5899999999999999999854

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.30  E-value=0.03  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|.+|||||||++.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999998854

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.035  Score=45.02  Aligned_cols=21  Identities=33%  Similarity=0.689  Sum_probs=18.9

Q ss_pred             EEEEEcCCcccHHHHHHHHHh
Q 019312           61 LVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~   81 (343)
                      -|+|+|..|+|||+|+..+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.02  Score=46.39  Aligned_cols=20  Identities=20%  Similarity=0.601  Sum_probs=8.4

Q ss_pred             EEEEcCCcccHHHHHHHHHh
Q 019312           62 VVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~   81 (343)
                      |+|+|..|||||||+..+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.18  E-value=0.034  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.2

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -|+|+|..|+|||+|...+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.13  E-value=0.027  Score=51.48  Aligned_cols=31  Identities=32%  Similarity=0.512  Sum_probs=24.1

Q ss_pred             ceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312           42 TVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~   77 (343)
                      +.|+|+...+     ..+.+.++.|.||+|||||+.
T Consensus         2 lpmh~san~~-----~~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1           2 FPMHASANVG-----KEGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEECEEEEC-----TTCCEEEEEECTTSCHHHHTC
T ss_pred             cccccccccC-----CCCCEEEEEccCCCCcccccc
Confidence            3567755543     567899999999999999864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.09  E-value=0.046  Score=46.69  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +.++|+|+|...+|||||+..|.+.
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3467999999999999999998765

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.03  E-value=0.039  Score=45.35  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=16.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhh
Q 019312           62 VVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        62 i~I~GpTGsGKStla~~la~~   82 (343)
                      ++|++|||||||.++..++..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHH
Confidence            567899999999877766653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.044  Score=44.86  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=19.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      --++|+|..|+|||+|+..+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46889999999999999977653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.70  E-value=0.04  Score=50.39  Aligned_cols=31  Identities=32%  Similarity=0.541  Sum_probs=24.4

Q ss_pred             ceeeeccCCCCCCCCCCCCEEEEEcCCcccHHHHHH
Q 019312           42 TVMASTSHTPAPAHSKKDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~i~I~GpTGsGKStla~   77 (343)
                      +.|+|+.-.+     ..+.+.++.|.||+|||||+.
T Consensus         2 l~mH~san~~-----~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1           2 LCMHASANVG-----KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEESEEEEEC-----TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCcccccccC-----CCCCEEEEEccCCCCccccee
Confidence            4577755443     567889999999999999983

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.04  Score=50.89  Aligned_cols=22  Identities=50%  Similarity=0.626  Sum_probs=18.2

Q ss_pred             CEEEEEcCCcccHHHHHHHHHh
Q 019312           60 KLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~   81 (343)
                      +-++|+|+||||||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            5689999999999999866543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.45  E-value=0.099  Score=41.89  Aligned_cols=27  Identities=30%  Similarity=0.244  Sum_probs=23.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      ..|.+-+|+||.-|||||-+...+..+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            568899999999999999888887654

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.45  E-value=0.031  Score=46.98  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=46.5

Q ss_pred             EEEEEcCCcccHHHHHHHHHhhcCCCceecCCceEEEecccccCCCCCccccc-ccCccccccccCCCcccChhhhhhhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATRFFPSEIINSDKMQVYKGLDITTNKIPSHKRH-NVPHHLLGEFVPDDVEFTPDDFRLQA  139 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~~~~~eIIs~Ds~qvy~gl~I~T~kp~~~e~~-~i~h~li~~~~~~~~~~s~~~f~~~a  139 (343)
                      ++.|+|++.||||.+|..|+...+        .+ +|    |.|+++..+|+. .|.+|--  .-+.. =.+...+... 
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~--------~~-~Y----iAT~~~~D~em~~RI~~Hr~--rR~~~-w~tiE~~~~l-   63 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP--------QV-LY----IATSQILDDEMAARIQHHKD--GRPAH-WRTAECWRHL-   63 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS--------SE-EE----EECCCC------CHHHHHHH--TSCTT-EEEECCSSCG-
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC--------Cc-EE----EEccCCCCHHHHHHHHHHHh--cCcCC-CEEecccccH-
Confidence            478999999999999999875432        23 34    557777666653 4544421  11111 0111111111 


Q ss_pred             hHHHHHHHhcCCeeEEEcCchhhHHHHHh
Q 019312          140 DNAISDIISRKKTPLLVGGSNSFIYSLLV  168 (343)
Q Consensus       140 ~~~i~~i~~~g~~pIlvGGT~lY~~aLl~  168 (343)
                      ...+.... ...-+|++.+-.+++..+++
T Consensus        64 ~~~l~~~~-~~~~~vLlDclt~~l~N~l~   91 (180)
T d1c9ka_          64 DTLITADL-APDDAILLECITTMVTNLLF   91 (180)
T ss_dssp             GGTSCTTS-CTTCEEEEECHHHHHHHHHH
T ss_pred             HHHHHhhc-CcccchhhhhhhHHHHHHHH
Confidence            11122211 34457888888888877775

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.43  E-value=0.045  Score=44.14  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEEEcCCcccHHHHHHHHHhh
Q 019312           61 LVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~la~~   82 (343)
                      -++|+|..|+|||+|+..+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.34  E-value=0.037  Score=44.66  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~   81 (343)
                      +.--|+|+|+.|||||||+..+..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            344588999999999999998764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.28  E-value=0.037  Score=46.04  Aligned_cols=20  Identities=25%  Similarity=0.265  Sum_probs=16.2

Q ss_pred             CCCEEEEEcCCcccHHHHHH
Q 019312           58 KDKLVVIMGATGTGKSGLSI   77 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~   77 (343)
                      .++-++|.+|||||||+.+.
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            35567899999999998763

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.063  Score=48.28  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+|..++|+|+.|+|||+|+..+++..
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999855

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.057  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +--|+|+|.||+|||||...|.+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            356999999999999999999764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.056  Score=48.16  Aligned_cols=25  Identities=40%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      -.+|+|+||.++|||+|+..|++..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3589999999999999999988754

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.86  E-value=0.04  Score=46.98  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=19.4

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhh
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~   82 (343)
                      .|+-++|++|||||||..+...+..
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHH
Confidence            4677889999999999876655543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.84  E-value=0.13  Score=47.07  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=22.8

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      -.|+|=|+-||||||+++.|++.++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            4678889999999999999999886

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.11  Score=44.90  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC----CCceecCC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF----PSEIINSD   92 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~----~~eIIs~D   92 (343)
                      +.++++++.|-=|+||||++..||..+.    ..-+|+.|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3467999999999999999888888773    12345655

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.26  E-value=0.06  Score=46.78  Aligned_cols=19  Identities=26%  Similarity=0.443  Sum_probs=16.9

Q ss_pred             CCCCCEEEEEcCCcccHHH
Q 019312           56 SKKDKLVVIMGATGTGKSG   74 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKSt   74 (343)
                      +.+++.++|.+|||||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            3678999999999999995

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.22  E-value=0.1  Score=47.99  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHh
Q 019312           59 DKLVVIMGATGTGKSGLSIDLAT   81 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~   81 (343)
                      .++.+|.||.|+||||++..+..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            67999999999999998765543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.17  E-value=0.11  Score=45.09  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...|.|.|++|+||+.+|+.|.....
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            45688999999999999999987654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.13  E-value=0.081  Score=48.36  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=27.6

Q ss_pred             eEEEEEeCCHHHHHHHHHHHHHHH--HhccHHHHHHHHHh
Q 019312          195 CCFLWVDSSLQLLYDYLNKRVDDM--LESGMFEELAEFFD  232 (343)
Q Consensus       195 ~~~i~L~~~re~L~~RI~~Rv~~M--l~~GlleEv~~l~~  232 (343)
                      ..+|+|+.+.++..+||.+|-...  ++...++-+++.+.
T Consensus       156 dliIyLd~~pe~~l~RI~~RgR~~E~idl~YL~~L~~~Y~  195 (329)
T d1e2ka_         156 TNIVLGALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYG  195 (329)
T ss_dssp             CEEEEEECCHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHH
Confidence            467899999999999999995432  33456666666554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.70  E-value=0.11  Score=43.63  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=23.8

Q ss_pred             CCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           58 KDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        58 ~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.-+.+.||+|+|||++|+.+++...
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            467889999999999999999998663

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.69  E-value=0.16  Score=44.84  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ++...+.|.||.++|||+++..|...++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            5667899999999999999999999986

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.64  E-value=0.24  Score=39.28  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      |.+-+|+||..|||||-+...+..+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            5678899999999999655555443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.46  E-value=0.12  Score=44.81  Aligned_cols=18  Identities=17%  Similarity=0.501  Sum_probs=14.5

Q ss_pred             EEEEEcCCcccHHHHHHH
Q 019312           61 LVVIMGATGTGKSGLSID   78 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~   78 (343)
                      .+.|.|+.||||||++..
T Consensus        16 ~~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEEECCCTTSCHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHH
Confidence            467889999999987544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.39  E-value=0.13  Score=42.84  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=22.0

Q ss_pred             CCEEEEE-cCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIM-GATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~-GpTGsGKStla~~la~~~~   84 (343)
                      +++|+|. +--|+||||++..||..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            4788888 6689999999999998774

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.38  E-value=0.17  Score=42.18  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ....+|..|||+|||-++..++..++
T Consensus        85 ~~~~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          85 DKRGCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             TSEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CCCcEEEeCCCCCceehHHhHHHHhc
Confidence            34566889999999999988888775

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.97  E-value=0.095  Score=47.87  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      -.|+|=|+-||||||+++.|++.+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588889999999999999999886

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.82  E-value=0.14  Score=40.13  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.|-.|.+.|-+||||||||.+|...+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5678899999999999999999977765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.16  Score=43.75  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=23.7

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      ...++|++.|-=|+||||++..||..+.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567889999999999999888888764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.61  E-value=0.14  Score=44.77  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=14.4

Q ss_pred             EEEEEcCCcccHHHHHHH
Q 019312           61 LVVIMGATGTGKSGLSID   78 (343)
Q Consensus        61 ~i~I~GpTGsGKStla~~   78 (343)
                      .+.|.|+.||||||.+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            366889999999987654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.85  E-value=0.31  Score=43.25  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             CCCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           56 SKKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        56 ~~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      +.+|+.++|+|+.|+|||+|+..++...
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3679999999999999999999998764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.38  E-value=0.18  Score=43.31  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.6

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.|+|.|-=|+||||++..||..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            5788999999999999999998875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.01  E-value=0.16  Score=45.22  Aligned_cols=28  Identities=14%  Similarity=0.031  Sum_probs=22.8

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+-+-|+|+|..|||||||+-.|....+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            3446799999999999999999965543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=84.76  E-value=0.22  Score=43.94  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      +.|+|+|..|+|||||+-+|....+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999965443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.20  E-value=0.24  Score=43.22  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +-|+|+|...||||||+.+|.+.
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCC
Confidence            35789999999999999999874

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.78  E-value=0.35  Score=39.95  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=20.7

Q ss_pred             CEEEEE-cCCcccHHHHHHHHHhhcC
Q 019312           60 KLVVIM-GATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        60 ~~i~I~-GpTGsGKStla~~la~~~~   84 (343)
                      ++|+|+ |-=|+||||++..||..+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la   27 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALA   27 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHH
Confidence            566766 7789999999999988774

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.62  E-value=0.4  Score=41.58  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCcccHHHHHHHHHhhcC
Q 019312           59 DKLVVIMGATGTGKSGLSIDLATRFF   84 (343)
Q Consensus        59 ~~~i~I~GpTGsGKStla~~la~~~~   84 (343)
                      .+.|+|.|-=|+||||++..||..+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA   27 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35778899999999999888887663

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.43  E-value=0.39  Score=42.07  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             CEEEEEcCCcccHHHHHHHHHhh
Q 019312           60 KLVVIMGATGTGKSGLSIDLATR   82 (343)
Q Consensus        60 ~~i~I~GpTGsGKStla~~la~~   82 (343)
                      +-|+|+|...||||||+.+|.+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCC
Confidence            35789999999999999999874

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.77  E-value=0.43  Score=47.42  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CCCCEEEEEcCCcccHHHHHHHHHhhc
Q 019312           57 KKDKLVVIMGATGTGKSGLSIDLATRF   83 (343)
Q Consensus        57 ~~~~~i~I~GpTGsGKStla~~la~~~   83 (343)
                      .+...|+|.|.||||||+-++.+.+.+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999886654